This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 79 focal events and 14 molecular subtypes across 1090 patients, 667 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1p36.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_1q22 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_1q32.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_1q44 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_2p24.3 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_3p25.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_3q26.33 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_4p16.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_4q12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_5p15.33 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_7p11.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_7q11.21 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_7q21.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_7q31.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_7q32.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_8q24.21 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_9q34.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_10p15.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_11p13 cnv correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_11q24.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_12p13.32 cnv correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_12q14.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_12q15 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_13q34 cnv correlated to 'MIR_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_14q32.33 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_17p13.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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amp_17q25.1 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_19p13.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19p13.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19q12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19q13.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_xp11.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p36.32 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p36.23 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p32.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p22.1 cnv correlated to 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1q42.11 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1q44 cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_2q22.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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del_2q37.1 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_3p21.31 cnv correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_3q13.31 cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_3q29 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_4q34.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5p15.33 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_5q34 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_6p25.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_6q22.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6q26 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8p23.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8q24.3 cnv correlated to 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_9p21.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10p15.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10p13 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10p11.23 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q23.31 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q26.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11p15.5 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_11p15.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11p11.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_12p13.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_12q12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_12q15 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_13q14.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_13q22.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_14q13.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_14q24.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_14q31.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_15q14 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_16p12.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_16q23.1 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_17p13.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_17q11.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_18q23 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'METHLYATION_CNMF'.
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del_19q13.41 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_19q13.43 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_22q13.32 cnv correlated to 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_xp22.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_xq21.1 cnv correlated to 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 79 focal events and 14 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 667 significant findings detected.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
MIR CNMF |
MIR CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 7p11 2 | 635 (58%) | 455 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0001 (0.000318) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00032 (0.000917) |
1e-05 (3.8e-05) |
4e-05 (0.000137) |
1e-05 (3.8e-05) |
amp 7q11 21 | 581 (53%) | 509 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
3e-05 (0.000107) |
4e-05 (0.000137) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00112 (0.00287) |
0.00095 (0.00247) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00447 (0.00985) |
1e-05 (3.8e-05) |
0.00023 (0.000671) |
1e-05 (3.8e-05) |
amp 7q31 2 | 646 (59%) | 444 |
0.00114 (0.00291) |
1e-05 (3.8e-05) |
0.0137 (0.0263) |
0.00906 (0.0182) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00858 (0.0172) |
0.025 (0.045) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0102 (0.0203) |
1e-05 (3.8e-05) |
0.00859 (0.0172) |
1e-05 (3.8e-05) |
del 10p15 3 | 553 (51%) | 537 |
2e-05 (7.25e-05) |
1e-05 (3.8e-05) |
0.00822 (0.0166) |
0.00355 (0.00798) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00039 (0.00111) |
0.00061 (0.00167) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
9e-05 (0.000292) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
del 10p13 | 553 (51%) | 537 |
2e-05 (7.25e-05) |
1e-05 (3.8e-05) |
0.00248 (0.00584) |
0.00133 (0.00334) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
5e-05 (0.000169) |
7e-05 (0.000229) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
4e-05 (0.000137) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
del 10p11 23 | 558 (51%) | 532 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00012 (0.000374) |
3e-05 (0.000107) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00062 (0.00168) |
0.00024 (0.000695) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
4e-05 (0.000137) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
del 10q23 31 | 628 (58%) | 462 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0121 (0.0235) |
0.00299 (0.0069) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
4e-05 (0.000137) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
del 10q26 3 | 665 (61%) | 425 |
1e-05 (3.8e-05) |
2e-05 (7.25e-05) |
0.0425 (0.0718) |
0.00155 (0.0038) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
2e-05 (7.25e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
amp 7q21 2 | 636 (58%) | 454 |
4e-05 (0.000137) |
1e-05 (3.8e-05) |
0.05 (0.0828) |
0.0001 (0.000318) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00488 (0.0106) |
0.0122 (0.0239) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00406 (0.00898) |
1e-05 (3.8e-05) |
0.00082 (0.00217) |
1e-05 (3.8e-05) |
amp 19q12 | 247 (23%) | 843 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.284 (0.354) |
0.00465 (0.0101) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0235 (0.0426) |
0.00083 (0.0022) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00018 (0.000534) |
1e-05 (3.8e-05) |
3e-05 (0.000107) |
1e-05 (3.8e-05) |
amp 19q13 2 | 231 (21%) | 859 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.221 (0.287) |
0.0068 (0.014) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00464 (0.0101) |
0.00118 (0.00299) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00016 (0.000483) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
del 19q13 41 | 366 (34%) | 724 |
0.00453 (0.00996) |
5e-05 (0.000169) |
0.0761 (0.118) |
0.0443 (0.0744) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0433 (0.073) |
0.00132 (0.00332) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
amp 7q32 3 | 659 (60%) | 431 |
0.00022 (0.000644) |
6e-05 (0.000199) |
0.0715 (0.112) |
0.00471 (0.0103) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00531 (0.0114) |
0.0159 (0.0301) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0546 (0.089) |
1e-05 (3.8e-05) |
0.022 (0.0402) |
1e-05 (3.8e-05) |
amp 19p13 3 | 375 (34%) | 715 |
1e-05 (3.8e-05) |
4e-05 (0.000137) |
0.0254 (0.0455) |
0.00245 (0.00578) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0939 (0.141) |
0.0265 (0.0472) |
0.00179 (0.00435) |
1e-05 (3.8e-05) |
0.00011 (0.000347) |
0.156 (0.217) |
0.0449 (0.0753) |
0.00078 (0.00207) |
amp 19p13 2 | 371 (34%) | 719 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.148 (0.207) |
0.00135 (0.00337) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0177 (0.0332) |
0.00655 (0.0135) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00024 (0.000695) |
0.141 (0.199) |
0.0407 (0.0695) |
0.00056 (0.00154) |
del 9p21 3 | 593 (54%) | 497 |
2e-05 (7.25e-05) |
2e-05 (7.25e-05) |
0.568 (0.63) |
0.0174 (0.0328) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.266 (0.334) |
1e-05 (3.8e-05) |
0.0012 (0.00304) |
1e-05 (3.8e-05) |
del 19q13 43 | 354 (32%) | 736 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00094 (0.00246) |
0.0567 (0.0914) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.13 (0.185) |
0.00792 (0.016) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
amp 3q26 33 | 132 (12%) | 958 |
0.00781 (0.0158) |
0.21 (0.274) |
0.45 (0.521) |
0.0572 (0.092) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00985 (0.0196) |
0.00691 (0.0142) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00348 (0.00789) |
0.0186 (0.0348) |
0.0215 (0.0397) |
0.00202 (0.00484) |
del 1p22 1 | 234 (21%) | 856 |
0.977 (0.985) |
0.553 (0.616) |
0.813 (0.854) |
0.0049 (0.0106) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0222 (0.0404) |
6e-05 (0.000199) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
del 22q13 32 | 289 (27%) | 801 |
0.719 (0.768) |
0.972 (0.982) |
0.0396 (0.0679) |
0.414 (0.486) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00011 (0.000347) |
0.00217 (0.00516) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0216 (0.0399) |
1e-05 (3.8e-05) |
0.00051 (0.00141) |
0.00011 (0.000347) |
amp 1p36 21 | 104 (10%) | 986 |
0.588 (0.647) |
0.428 (0.5) |
0.404 (0.477) |
0.117 (0.168) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0222 (0.0405) |
0.0208 (0.0386) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.013 (0.0252) |
1e-05 (3.8e-05) |
0.0338 (0.0588) |
0.00076 (0.00203) |
del 1p36 32 | 318 (29%) | 772 |
0.836 (0.873) |
0.703 (0.752) |
0.701 (0.751) |
0.254 (0.322) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0103 (0.0204) |
0.00051 (0.00141) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
del 1p32 3 | 257 (24%) | 833 |
0.243 (0.312) |
0.367 (0.441) |
0.83 (0.868) |
0.158 (0.218) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00229 (0.00544) |
3e-05 (0.000107) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
del 2q37 1 | 121 (11%) | 969 |
0.1 (0.149) |
0.00587 (0.0123) |
0.315 (0.387) |
0.823 (0.862) |
0.00491 (0.0106) |
1e-05 (3.8e-05) |
0.0119 (0.0233) |
0.0058 (0.0122) |
0.0239 (0.0431) |
1e-05 (3.8e-05) |
0.00118 (0.00299) |
0.022 (0.0402) |
0.00107 (0.00275) |
0.143 (0.201) |
del 4q34 3 | 231 (21%) | 859 |
0.00523 (0.0112) |
0.00029 (0.000835) |
0.0754 (0.118) |
0.0963 (0.145) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.202 (0.268) |
0.818 (0.859) |
0.00191 (0.0046) |
0.00022 (0.000644) |
0.0304 (0.0535) |
0.0378 (0.0652) |
0.00103 (0.00266) |
0.00545 (0.0116) |
del 11p15 1 | 176 (16%) | 914 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.808 (0.85) |
0.0772 (0.119) |
0.00262 (0.00613) |
1e-05 (3.8e-05) |
0.0427 (0.0722) |
0.545 (0.612) |
0.00111 (0.00285) |
1e-05 (3.8e-05) |
2e-05 (7.25e-05) |
0.0001 (0.000318) |
0.874 (0.901) |
0.0335 (0.0583) |
del 11p11 2 | 159 (15%) | 931 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.502 (0.569) |
0.0191 (0.0356) |
0.00012 (0.000374) |
1e-05 (3.8e-05) |
0.0977 (0.146) |
0.467 (0.538) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00046 (0.00128) |
1e-05 (3.8e-05) |
0.385 (0.457) |
0.00043 (0.00121) |
del 14q24 2 | 292 (27%) | 798 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0579 (0.0928) |
0.156 (0.216) |
0.00576 (0.0122) |
0.159 (0.218) |
0.0252 (0.0452) |
0.204 (0.268) |
9e-05 (0.000292) |
0.00016 (0.000483) |
0.0004 (0.00113) |
0.00511 (0.011) |
0.0042 (0.00927) |
0.00143 (0.00352) |
del 14q31 3 | 275 (25%) | 815 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.343 (0.416) |
0.164 (0.225) |
0.00553 (0.0117) |
0.0997 (0.149) |
0.0334 (0.0581) |
0.353 (0.426) |
0.00031 (0.000891) |
0.00033 (0.000941) |
0.00097 (0.00252) |
0.00794 (0.016) |
0.00716 (0.0147) |
0.00344 (0.00781) |
del 17q11 2 | 93 (9%) | 997 |
2e-05 (7.25e-05) |
4e-05 (0.000137) |
0.00262 (0.00613) |
0.0109 (0.0216) |
1e-05 (3.8e-05) |
0.00021 (0.000618) |
0.0627 (0.0995) |
0.0013 (0.00328) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.172 (0.233) |
0.136 (0.192) |
0.778 (0.822) |
0.00613 (0.0127) |
amp 4q12 | 138 (13%) | 952 |
0.00065 (0.00176) |
0.00323 (0.00738) |
0.535 (0.603) |
0.472 (0.543) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.339 (0.412) |
0.0556 (0.09) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00302 (0.00696) |
0.00016 (0.000483) |
0.943 (0.96) |
0.00393 (0.00873) |
amp 8q24 21 | 169 (16%) | 921 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0161 (0.0304) |
0.236 (0.304) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.669 (0.722) |
0.434 (0.506) |
0.00061 (0.00167) |
1e-05 (3.8e-05) |
0.076 (0.118) |
0.00089 (0.00234) |
0.111 (0.162) |
6e-05 (0.000199) |
amp 10p15 1 | 88 (8%) | 1002 |
0.00015 (0.000458) |
2e-05 (7.25e-05) |
0.00545 (0.0116) |
0.0578 (0.0928) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.425 (0.498) |
0.146 (0.204) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00045 (0.00126) |
0.219 (0.285) |
0.38 (0.452) |
0.00088 (0.00232) |
del 1p36 23 | 348 (32%) | 742 |
0.0702 (0.11) |
0.183 (0.247) |
0.569 (0.63) |
0.554 (0.617) |
0.00017 (0.000507) |
1e-05 (3.8e-05) |
0.104 (0.153) |
0.011 (0.0216) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
del 6q22 31 | 236 (22%) | 854 |
0.633 (0.69) |
0.99 (0.996) |
0.294 (0.364) |
0.285 (0.354) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00353 (0.00795) |
0.00188 (0.00454) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00067 (0.00181) |
0.12 (0.172) |
0.00596 (0.0125) |
2e-05 (7.25e-05) |
del 6q26 | 261 (24%) | 829 |
0.743 (0.789) |
0.756 (0.801) |
0.477 (0.547) |
0.548 (0.614) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.00014 (0.000434) |
6e-05 (0.000199) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
4e-05 (0.000137) |
0.16 (0.219) |
0.00378 (0.00843) |
1e-05 (3.8e-05) |
del 14q13 1 | 246 (23%) | 844 |
2e-05 (7.25e-05) |
0.00015 (0.000458) |
0.614 (0.671) |
0.663 (0.718) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0853 (0.131) |
0.313 (0.385) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0628 (0.0995) |
0.00016 (0.000483) |
0.00285 (0.00664) |
2e-05 (7.25e-05) |
amp 1q22 | 144 (13%) | 946 |
0.0132 (0.0255) |
0.0257 (0.046) |
0.0416 (0.0708) |
0.379 (0.452) |
1e-05 (3.8e-05) |
0.00019 (0.000562) |
0.0367 (0.0635) |
0.203 (0.268) |
1e-05 (3.8e-05) |
7e-05 (0.000229) |
0.569 (0.63) |
0.0903 (0.137) |
0.155 (0.215) |
0.313 (0.385) |
amp 12q14 1 | 171 (16%) | 919 |
0.0672 (0.106) |
0.147 (0.206) |
0.1 (0.149) |
0.0881 (0.134) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.121 (0.173) |
0.925 (0.944) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0028 (0.00653) |
1e-05 (3.8e-05) |
0.0419 (0.0711) |
1e-05 (3.8e-05) |
del 5q34 | 133 (12%) | 957 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
6e-05 (0.000199) |
0.00579 (0.0122) |
0.00012 (0.000374) |
1e-05 (3.8e-05) |
0.264 (0.333) |
0.0882 (0.134) |
0.0542 (0.0887) |
1e-05 (3.8e-05) |
0.00012 (0.000374) |
0.056 (0.0906) |
0.571 (0.632) |
0.392 (0.464) |
del 8q24 3 | 78 (7%) | 1012 |
0.178 (0.24) |
0.868 (0.898) |
0.00339 (0.00773) |
0.464 (0.536) |
0.0001 (0.000318) |
1e-05 (3.8e-05) |
0.109 (0.16) |
0.108 (0.158) |
0.0238 (0.0431) |
0.00361 (0.0081) |
0.00496 (0.0107) |
0.00137 (0.00341) |
0.193 (0.257) |
0.0225 (0.0409) |
del 11p15 5 | 234 (21%) | 856 |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.162 (0.222) |
0.00161 (0.00394) |
0.00077 (0.00205) |
1e-05 (3.8e-05) |
0.0962 (0.145) |
0.905 (0.928) |
0.227 (0.294) |
1e-05 (3.8e-05) |
5e-05 (0.000169) |
0.0123 (0.0239) |
1 (1.00) |
0.901 (0.924) |
del 13q14 2 | 383 (35%) | 707 |
1e-05 (3.8e-05) |
4e-05 (0.000137) |
0.354 (0.427) |
0.145 (0.203) |
1e-05 (3.8e-05) |
0.00017 (0.000507) |
0.2 (0.265) |
0.582 (0.641) |
5e-05 (0.000169) |
1e-05 (3.8e-05) |
0.0175 (0.0329) |
0.00589 (0.0123) |
0.474 (0.544) |
0.413 (0.486) |
del 13q22 1 | 367 (34%) | 723 |
1e-05 (3.8e-05) |
0.00015 (0.000458) |
0.51 (0.577) |
0.338 (0.412) |
1e-05 (3.8e-05) |
0.00177 (0.00432) |
0.13 (0.186) |
0.916 (0.937) |
0.00013 (0.000404) |
2e-05 (7.25e-05) |
0.0159 (0.0301) |
0.00178 (0.00434) |
0.359 (0.431) |
0.207 (0.271) |
del 15q14 | 214 (20%) | 876 |
2e-05 (7.25e-05) |
1e-05 (3.8e-05) |
0.00071 (0.00191) |
0.00015 (0.000458) |
7e-05 (0.000229) |
0.00192 (0.00461) |
0.196 (0.261) |
0.0583 (0.0934) |
4e-05 (0.000137) |
0.00046 (0.00128) |
0.473 (0.544) |
0.758 (0.802) |
0.133 (0.189) |
0.0594 (0.0948) |
del 16q23 1 | 129 (12%) | 961 |
0.0148 (0.0282) |
0.488 (0.557) |
0.874 (0.901) |
0.536 (0.603) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0688 (0.108) |
0.00052 (0.00144) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.248 (0.316) |
0.0144 (0.0276) |
0.197 (0.262) |
0.0324 (0.0567) |
del 17p13 1 | 116 (11%) | 974 |
0.00024 (0.000695) |
0.00138 (0.00342) |
0.628 (0.685) |
0.898 (0.922) |
1e-05 (3.8e-05) |
0.00045 (0.00126) |
0.193 (0.258) |
0.0629 (0.0995) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.186 (0.25) |
0.00363 (0.00813) |
0.613 (0.671) |
0.0441 (0.0742) |
amp 1q32 1 | 205 (19%) | 885 |
0.82 (0.859) |
0.0617 (0.0984) |
0.333 (0.407) |
0.149 (0.207) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.0973 (0.146) |
0.229 (0.296) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.342 (0.415) |
1e-05 (3.8e-05) |
0.00074 (0.00198) |
1e-05 (3.8e-05) |
amp 5p15 33 | 76 (7%) | 1014 |
0.0344 (0.0596) |
0.0854 (0.131) |
0.104 (0.152) |
0.233 (0.301) |
3e-05 (0.000107) |
0.0093 (0.0186) |
0.427 (0.5) |
0.198 (0.263) |
6e-05 (0.000199) |
0.00033 (0.000941) |
0.143 (0.201) |
0.0032 (0.00733) |
0.169 (0.23) |
0.0374 (0.0645) |
amp 9q34 3 | 140 (13%) | 950 |
0.00652 (0.0135) |
0.00608 (0.0127) |
0.234 (0.301) |
0.0563 (0.0909) |
0.00186 (0.0045) |
0.0397 (0.0679) |
0.0305 (0.0535) |
0.985 (0.992) |
0.0108 (0.0213) |
0.0177 (0.0331) |
0.201 (0.266) |
0.0858 (0.131) |
0.282 (0.353) |
0.285 (0.354) |
amp 11q24 1 | 112 (10%) | 978 |
0.00403 (0.00893) |
0.00771 (0.0157) |
0.0912 (0.138) |
0.0679 (0.107) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.209 (0.273) |
0.0866 (0.132) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.761 (0.805) |
0.114 (0.165) |
0.855 (0.888) |
0.0437 (0.0736) |
amp 12p13 32 | 152 (14%) | 938 |
0.664 (0.718) |
0.384 (0.457) |
0.343 (0.416) |
0.431 (0.503) |
0.865 (0.895) |
1e-05 (3.8e-05) |
0.00245 (0.00578) |
0.012 (0.0235) |
0.00351 (0.00792) |
1e-05 (3.8e-05) |
0.00319 (0.00732) |
0.00341 (0.00776) |
0.0516 (0.0849) |
0.0762 (0.118) |
del 5p15 33 | 107 (10%) | 983 |
1e-05 (3.8e-05) |
3e-05 (0.000107) |
0.00142 (0.00351) |
0.0541 (0.0886) |
0.00648 (0.0134) |
1e-05 (3.8e-05) |
0.143 (0.201) |
0.637 (0.694) |
0.104 (0.153) |
0.00296 (0.00685) |
0.00207 (0.00494) |
0.207 (0.271) |
0.947 (0.962) |
0.442 (0.513) |
del 16p12 2 | 114 (10%) | 976 |
0.247 (0.315) |
0.234 (0.301) |
0.397 (0.47) |
0.872 (0.901) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.24 (0.308) |
0.0159 (0.0301) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.656 (0.711) |
0.0217 (0.04) |
0.962 (0.973) |
0.00549 (0.0117) |
del xp22 2 | 228 (21%) | 862 |
0.00611 (0.0127) |
0.00145 (0.00356) |
0.111 (0.162) |
0.169 (0.23) |
0.0619 (0.0985) |
0.00371 (0.00829) |
0.00293 (0.00681) |
0.0212 (0.0393) |
0.051 (0.0842) |
0.0171 (0.0324) |
0.0308 (0.0541) |
0.37 (0.444) |
0.0556 (0.09) |
0.0756 (0.118) |
del xq21 1 | 184 (17%) | 906 |
0.0622 (0.0988) |
0.00089 (0.00234) |
0.038 (0.0653) |
0.102 (0.15) |
0.492 (0.56) |
0.0106 (0.021) |
0.00062 (0.00168) |
0.0316 (0.0554) |
0.00121 (0.00306) |
0.258 (0.327) |
0.00103 (0.00266) |
0.358 (0.431) |
0.119 (0.171) |
0.159 (0.218) |
amp 1q44 | 129 (12%) | 961 |
0.145 (0.203) |
0.625 (0.682) |
0.604 (0.663) |
0.309 (0.381) |
1e-05 (3.8e-05) |
7e-05 (0.000229) |
0.0262 (0.0468) |
0.138 (0.195) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.434 (0.506) |
0.0219 (0.0402) |
0.0553 (0.0898) |
0.0802 (0.124) |
amp xp11 21 | 104 (10%) | 986 |
0.24 (0.308) |
0.782 (0.825) |
0.578 (0.637) |
0.972 (0.982) |
5e-05 (0.000169) |
1e-05 (3.8e-05) |
0.215 (0.281) |
0.0518 (0.0851) |
0.00306 (0.00704) |
1e-05 (3.8e-05) |
8e-05 (0.000261) |
0.268 (0.337) |
0.189 (0.253) |
0.0035 (0.00792) |
del 3p21 31 | 108 (10%) | 982 |
0.189 (0.253) |
0.168 (0.23) |
0.476 (0.546) |
0.293 (0.363) |
0.102 (0.151) |
0.00095 (0.00247) |
0.00093 (0.00244) |
0.0379 (0.0652) |
0.0876 (0.133) |
0.0251 (0.0451) |
0.00134 (0.00335) |
0.00249 (0.00585) |
0.721 (0.769) |
0.0667 (0.105) |
del 8p23 2 | 88 (8%) | 1002 |
0.375 (0.449) |
0.245 (0.314) |
0.18 (0.242) |
0.274 (0.344) |
4e-05 (0.000137) |
1e-05 (3.8e-05) |
0.157 (0.217) |
0.214 (0.279) |
0.00017 (0.000507) |
0.00026 (0.000751) |
0.113 (0.164) |
0.00765 (0.0156) |
1 (1.00) |
0.00138 (0.00342) |
del 12q12 | 147 (13%) | 943 |
0.0134 (0.0259) |
0.00057 (0.00156) |
0.27 (0.338) |
0.0842 (0.129) |
0.00515 (0.0111) |
1e-05 (3.8e-05) |
0.989 (0.995) |
0.945 (0.961) |
0.863 (0.894) |
0.0001 (0.000318) |
0.00707 (0.0145) |
0.467 (0.538) |
0.85 (0.885) |
0.961 (0.973) |
del 12q15 | 142 (13%) | 948 |
0.00017 (0.000507) |
0.00212 (0.00505) |
0.487 (0.556) |
0.423 (0.496) |
0.0414 (0.0706) |
1e-05 (3.8e-05) |
0.752 (0.797) |
0.917 (0.937) |
0.678 (0.73) |
1e-05 (3.8e-05) |
0.00107 (0.00275) |
0.313 (0.385) |
0.928 (0.946) |
0.941 (0.959) |
amp 2p24 3 | 72 (7%) | 1018 |
0.1 (0.149) |
0.0177 (0.0331) |
0.431 (0.503) |
0.979 (0.987) |
0.0299 (0.0527) |
0.102 (0.151) |
0.0661 (0.104) |
0.499 (0.568) |
0.00551 (0.0117) |
0.00774 (0.0157) |
0.545 (0.612) |
0.0289 (0.0513) |
0.615 (0.672) |
0.122 (0.175) |
amp 3p25 3 | 85 (8%) | 1005 |
0.00047 (0.00131) |
0.0146 (0.0278) |
0.597 (0.657) |
0.0512 (0.0844) |
0.0546 (0.089) |
0.0114 (0.0224) |
0.0417 (0.0709) |
0.136 (0.192) |
0.0995 (0.148) |
0.0229 (0.0415) |
0.441 (0.512) |
0.668 (0.721) |
1 (1.00) |
0.347 (0.419) |
amp 17p13 2 | 74 (7%) | 1016 |
0.00073 (0.00196) |
0.0138 (0.0265) |
0.0488 (0.0812) |
0.112 (0.163) |
0.0775 (0.12) |
0.0972 (0.146) |
0.00609 (0.0127) |
0.206 (0.271) |
0.535 (0.603) |
0.854 (0.888) |
0.248 (0.316) |
0.674 (0.725) |
0.033 (0.0576) |
0.186 (0.249) |
del 1q42 11 | 80 (7%) | 1010 |
0.219 (0.285) |
0.825 (0.863) |
0.514 (0.581) |
0.284 (0.354) |
0.00958 (0.0191) |
0.00018 (0.000534) |
0.223 (0.29) |
0.0717 (0.112) |
0.166 (0.227) |
0.0292 (0.0515) |
0.0125 (0.0242) |
0.113 (0.164) |
0.639 (0.695) |
0.0281 (0.0499) |
del 6p25 3 | 138 (13%) | 952 |
0.101 (0.15) |
0.0901 (0.137) |
0.376 (0.45) |
0.889 (0.914) |
0.0213 (0.0394) |
0.00781 (0.0158) |
0.164 (0.225) |
0.0136 (0.0263) |
0.00192 (0.00461) |
0.00143 (0.00352) |
0.413 (0.486) |
0.252 (0.32) |
0.145 (0.203) |
0.0863 (0.132) |
del 12p13 1 | 110 (10%) | 980 |
0.0493 (0.0817) |
0.0138 (0.0264) |
0.254 (0.322) |
0.232 (0.299) |
0.0971 (0.146) |
0.00721 (0.0147) |
0.812 (0.853) |
0.408 (0.481) |
0.113 (0.164) |
0.00182 (0.00441) |
0.0571 (0.0919) |
0.0457 (0.0765) |
0.955 (0.969) |
0.251 (0.319) |
amp 4p16 3 | 70 (6%) | 1020 |
0.309 (0.381) |
0.724 (0.773) |
0.859 (0.89) |
0.084 (0.129) |
0.00066 (0.00178) |
0.0038 (0.00846) |
0.458 (0.53) |
0.0594 (0.0948) |
0.0001 (0.000318) |
0.0002 (0.00059) |
0.119 (0.171) |
0.337 (0.411) |
0.609 (0.668) |
0.259 (0.327) |
amp 12q15 | 111 (10%) | 979 |
0.73 (0.777) |
0.316 (0.387) |
0.707 (0.756) |
0.279 (0.349) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.142 (0.2) |
0.695 (0.746) |
1e-05 (3.8e-05) |
1e-05 (3.8e-05) |
0.379 (0.452) |
0.0552 (0.0898) |
0.205 (0.269) |
0.0543 (0.0887) |
amp 17q25 1 | 128 (12%) | 962 |
0.014 (0.0269) |
0.256 (0.324) |
0.283 (0.354) |
0.727 (0.774) |
0.0001 (0.000318) |
0.229 (0.296) |
0.185 (0.249) |
0.645 (0.7) |
0.0117 (0.023) |
0.0346 (0.0599) |
0.15 (0.209) |
0.564 (0.626) |
0.188 (0.252) |
0.562 (0.625) |
del 1q44 | 71 (7%) | 1019 |
0.338 (0.412) |
0.26 (0.328) |
0.839 (0.875) |
1 (1.00) |
0.172 (0.233) |
0.00015 (0.000458) |
0.2 (0.265) |
0.0269 (0.0479) |
0.113 (0.164) |
0.00454 (0.00996) |
0.048 (0.0799) |
0.55 (0.615) |
0.435 (0.506) |
0.163 (0.223) |
del 2q22 1 | 68 (6%) | 1022 |
0.00542 (0.0116) |
0.029 (0.0513) |
0.386 (0.458) |
0.552 (0.616) |
0.0386 (0.0663) |
0.0458 (0.0765) |
0.0872 (0.133) |
0.542 (0.609) |
0.119 (0.171) |
0.0745 (0.116) |
0.107 (0.157) |
0.801 (0.844) |
0.842 (0.877) |
0.289 (0.358) |
del 3q13 31 | 95 (9%) | 995 |
0.573 (0.634) |
0.346 (0.419) |
0.609 (0.668) |
0.514 (0.581) |
0.85 (0.885) |
0.00295 (0.00684) |
0.134 (0.191) |
0.0198 (0.0367) |
0.387 (0.458) |
0.0462 (0.0771) |
0.157 (0.218) |
0.00055 (0.00152) |
0.574 (0.634) |
0.115 (0.166) |
amp 13q34 | 54 (5%) | 1036 |
0.261 (0.328) |
0.204 (0.268) |
0.0292 (0.0515) |
0.481 (0.55) |
0.5 (0.568) |
0.00118 (0.00299) |
0.0636 (0.101) |
0.46 (0.532) |
0.135 (0.191) |
0.027 (0.0481) |
0.296 (0.366) |
0.69 (0.741) |
0.961 (0.973) |
0.051 (0.0842) |
amp 14q32 33 | 44 (4%) | 1046 |
0.187 (0.251) |
0.657 (0.712) |
0.0905 (0.137) |
0.921 (0.94) |
0.00034 (0.000967) |
0.501 (0.569) |
0.335 (0.409) |
0.316 (0.388) |
0.0218 (0.0401) |
0.00925 (0.0185) |
1 (1.00) |
0.523 (0.59) |
0.743 (0.789) |
0.562 (0.625) |
del 3q29 | 107 (10%) | 983 |
0.169 (0.23) |
0.173 (0.234) |
0.551 (0.616) |
0.856 (0.888) |
1 (1.00) |
0.00239 (0.00566) |
0.329 (0.403) |
0.67 (0.722) |
0.053 (0.0869) |
0.00503 (0.0108) |
0.236 (0.304) |
0.0424 (0.0718) |
0.888 (0.914) |
0.406 (0.479) |
del 18q23 | 151 (14%) | 939 |
0.0489 (0.0813) |
0.0193 (0.0359) |
0.739 (0.786) |
0.504 (0.571) |
0.481 (0.55) |
0.00465 (0.0101) |
0.116 (0.168) |
0.418 (0.491) |
0.912 (0.934) |
0.65 (0.705) |
0.31 (0.383) |
0.883 (0.91) |
0.684 (0.736) |
0.379 (0.452) |
amp 11p13 | 60 (6%) | 1030 |
0.785 (0.828) |
0.348 (0.421) |
0.549 (0.614) |
0.248 (0.316) |
0.479 (0.549) |
0.00017 (0.000507) |
0.172 (0.233) |
0.158 (0.218) |
0.459 (0.531) |
0.1 (0.149) |
0.0772 (0.119) |
0.117 (0.168) |
0.363 (0.436) |
0.0225 (0.0409) |
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S1. Gene #1: 'amp_1p36.21' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 1(1P36.21) MUTATED | 91 | 7 | 6 |
AMP PEAK 1(1P36.21) WILD-TYPE | 442 | 535 | 9 |
Figure S1. Get High-res Image Gene #1: 'amp_1p36.21' versus Molecular Subtype #5: 'CN_CNMF'
![](D1V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S2. Gene #1: 'amp_1p36.21' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 1(1P36.21) MUTATED | 22 | 5 | 0 | 0 |
AMP PEAK 1(1P36.21) WILD-TYPE | 162 | 232 | 64 | 165 |
Figure S2. Get High-res Image Gene #1: 'amp_1p36.21' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D1V6.png)
P value = 0.0222 (Fisher's exact test), Q value = 0.041
Table S3. Gene #1: 'amp_1p36.21' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 1(1P36.21) MUTATED | 12 | 6 | 20 |
AMP PEAK 1(1P36.21) WILD-TYPE | 212 | 198 | 198 |
Figure S3. Get High-res Image Gene #1: 'amp_1p36.21' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D1V7.png)
P value = 0.0208 (Fisher's exact test), Q value = 0.039
Table S4. Gene #1: 'amp_1p36.21' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
AMP PEAK 1(1P36.21) MUTATED | 14 | 21 | 3 |
AMP PEAK 1(1P36.21) WILD-TYPE | 220 | 233 | 155 |
Figure S4. Get High-res Image Gene #1: 'amp_1p36.21' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D1V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S5. Gene #1: 'amp_1p36.21' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 1(1P36.21) MUTATED | 37 | 3 | 0 |
AMP PEAK 1(1P36.21) WILD-TYPE | 196 | 232 | 192 |
Figure S5. Get High-res Image Gene #1: 'amp_1p36.21' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D1V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S6. Gene #1: 'amp_1p36.21' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 1(1P36.21) MUTATED | 35 | 5 | 0 |
AMP PEAK 1(1P36.21) WILD-TYPE | 168 | 185 | 267 |
Figure S6. Get High-res Image Gene #1: 'amp_1p36.21' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D1V10.png)
P value = 0.013 (Fisher's exact test), Q value = 0.025
Table S7. Gene #1: 'amp_1p36.21' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 1(1P36.21) MUTATED | 7 | 4 | 1 | 0 |
AMP PEAK 1(1P36.21) WILD-TYPE | 130 | 103 | 182 | 82 |
Figure S7. Get High-res Image Gene #1: 'amp_1p36.21' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D1V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S8. Gene #1: 'amp_1p36.21' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 1(1P36.21) MUTATED | 3 | 0 | 9 |
AMP PEAK 1(1P36.21) WILD-TYPE | 219 | 184 | 94 |
Figure S8. Get High-res Image Gene #1: 'amp_1p36.21' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D1V12.png)
P value = 0.0338 (Fisher's exact test), Q value = 0.059
Table S9. Gene #1: 'amp_1p36.21' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 1(1P36.21) MUTATED | 9 | 1 | 2 |
AMP PEAK 1(1P36.21) WILD-TYPE | 176 | 160 | 157 |
Figure S9. Get High-res Image Gene #1: 'amp_1p36.21' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D1V13.png)
P value = 0.00076 (Fisher's exact test), Q value = 0.002
Table S10. Gene #1: 'amp_1p36.21' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 1(1P36.21) MUTATED | 1 | 2 | 1 | 8 |
AMP PEAK 1(1P36.21) WILD-TYPE | 90 | 135 | 187 | 81 |
Figure S10. Get High-res Image Gene #1: 'amp_1p36.21' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D1V14.png)
P value = 0.0132 (Fisher's exact test), Q value = 0.025
Table S11. Gene #2: 'amp_1q22' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 2(1Q22) MUTATED | 26 | 28 | 19 | 19 |
AMP PEAK 2(1Q22) WILD-TYPE | 121 | 68 | 133 | 94 |
Figure S11. Get High-res Image Gene #2: 'amp_1q22' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D2V1.png)
P value = 0.0257 (Fisher's exact test), Q value = 0.046
Table S12. Gene #2: 'amp_1q22' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 2(1Q22) MUTATED | 27 | 25 | 9 | 31 |
AMP PEAK 2(1Q22) WILD-TYPE | 121 | 77 | 91 | 127 |
Figure S12. Get High-res Image Gene #2: 'amp_1q22' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D2V2.png)
P value = 0.0416 (Fisher's exact test), Q value = 0.071
Table S13. Gene #2: 'amp_1q22' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
AMP PEAK 2(1Q22) MUTATED | 18 | 40 | 13 | 26 |
AMP PEAK 2(1Q22) WILD-TYPE | 138 | 143 | 74 | 94 |
Figure S13. Get High-res Image Gene #2: 'amp_1q22' versus Molecular Subtype #3: 'MIR_CNMF'
![](D2V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S14. Gene #2: 'amp_1q22' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 2(1Q22) MUTATED | 92 | 45 | 7 |
AMP PEAK 2(1Q22) WILD-TYPE | 441 | 497 | 8 |
Figure S14. Get High-res Image Gene #2: 'amp_1q22' versus Molecular Subtype #5: 'CN_CNMF'
![](D2V5.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.00056
Table S15. Gene #2: 'amp_1q22' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 2(1Q22) MUTATED | 31 | 19 | 1 | 8 |
AMP PEAK 2(1Q22) WILD-TYPE | 153 | 218 | 63 | 157 |
Figure S15. Get High-res Image Gene #2: 'amp_1q22' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D2V6.png)
P value = 0.0367 (Fisher's exact test), Q value = 0.063
Table S16. Gene #2: 'amp_1q22' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 2(1Q22) MUTATED | 18 | 18 | 33 |
AMP PEAK 2(1Q22) WILD-TYPE | 206 | 186 | 185 |
Figure S16. Get High-res Image Gene #2: 'amp_1q22' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D2V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S17. Gene #2: 'amp_1q22' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 2(1Q22) MUTATED | 44 | 15 | 11 |
AMP PEAK 2(1Q22) WILD-TYPE | 189 | 220 | 181 |
Figure S17. Get High-res Image Gene #2: 'amp_1q22' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D2V9.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00023
Table S18. Gene #2: 'amp_1q22' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 2(1Q22) MUTATED | 37 | 19 | 14 |
AMP PEAK 2(1Q22) WILD-TYPE | 166 | 171 | 253 |
Figure S18. Get High-res Image Gene #2: 'amp_1q22' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D2V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S19. Gene #3: 'amp_1q32.1' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 3(1Q32.1) MUTATED | 163 | 35 | 7 |
AMP PEAK 3(1Q32.1) WILD-TYPE | 370 | 507 | 8 |
Figure S19. Get High-res Image Gene #3: 'amp_1q32.1' versus Molecular Subtype #5: 'CN_CNMF'
![](D3V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S20. Gene #3: 'amp_1q32.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 3(1Q32.1) MUTATED | 53 | 12 | 6 | 6 |
AMP PEAK 3(1Q32.1) WILD-TYPE | 131 | 225 | 58 | 159 |
Figure S20. Get High-res Image Gene #3: 'amp_1q32.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D3V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S21. Gene #3: 'amp_1q32.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 3(1Q32.1) MUTATED | 62 | 6 | 16 |
AMP PEAK 3(1Q32.1) WILD-TYPE | 171 | 229 | 176 |
Figure S21. Get High-res Image Gene #3: 'amp_1q32.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D3V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S22. Gene #3: 'amp_1q32.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 3(1Q32.1) MUTATED | 58 | 8 | 18 |
AMP PEAK 3(1Q32.1) WILD-TYPE | 145 | 182 | 249 |
Figure S22. Get High-res Image Gene #3: 'amp_1q32.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D3V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S23. Gene #3: 'amp_1q32.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 3(1Q32.1) MUTATED | 8 | 14 | 23 |
AMP PEAK 3(1Q32.1) WILD-TYPE | 214 | 170 | 80 |
Figure S23. Get High-res Image Gene #3: 'amp_1q32.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D3V12.png)
P value = 0.00074 (Fisher's exact test), Q value = 0.002
Table S24. Gene #3: 'amp_1q32.1' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 3(1Q32.1) MUTATED | 24 | 4 | 17 |
AMP PEAK 3(1Q32.1) WILD-TYPE | 161 | 157 | 142 |
Figure S24. Get High-res Image Gene #3: 'amp_1q32.1' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D3V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S25. Gene #3: 'amp_1q32.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 3(1Q32.1) MUTATED | 5 | 3 | 14 | 23 |
AMP PEAK 3(1Q32.1) WILD-TYPE | 86 | 134 | 174 | 66 |
Figure S25. Get High-res Image Gene #3: 'amp_1q32.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D3V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S26. Gene #4: 'amp_1q44' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 4(1Q44) MUTATED | 96 | 28 | 5 |
AMP PEAK 4(1Q44) WILD-TYPE | 437 | 514 | 10 |
Figure S26. Get High-res Image Gene #4: 'amp_1q44' versus Molecular Subtype #5: 'CN_CNMF'
![](D4V5.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00023
Table S27. Gene #4: 'amp_1q44' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 4(1Q44) MUTATED | 27 | 12 | 1 | 5 |
AMP PEAK 4(1Q44) WILD-TYPE | 157 | 225 | 63 | 160 |
Figure S27. Get High-res Image Gene #4: 'amp_1q44' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D4V6.png)
P value = 0.0262 (Fisher's exact test), Q value = 0.047
Table S28. Gene #4: 'amp_1q44' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 4(1Q44) MUTATED | 12 | 15 | 27 |
AMP PEAK 4(1Q44) WILD-TYPE | 212 | 189 | 191 |
Figure S28. Get High-res Image Gene #4: 'amp_1q44' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D4V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S29. Gene #4: 'amp_1q44' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 4(1Q44) MUTATED | 39 | 7 | 10 |
AMP PEAK 4(1Q44) WILD-TYPE | 194 | 228 | 182 |
Figure S29. Get High-res Image Gene #4: 'amp_1q44' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D4V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S30. Gene #4: 'amp_1q44' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 4(1Q44) MUTATED | 35 | 9 | 12 |
AMP PEAK 4(1Q44) WILD-TYPE | 168 | 181 | 255 |
Figure S30. Get High-res Image Gene #4: 'amp_1q44' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D4V10.png)
P value = 0.0219 (Fisher's exact test), Q value = 0.04
Table S31. Gene #4: 'amp_1q44' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 4(1Q44) MUTATED | 8 | 10 | 12 |
AMP PEAK 4(1Q44) WILD-TYPE | 214 | 174 | 91 |
Figure S31. Get High-res Image Gene #4: 'amp_1q44' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D4V12.png)
P value = 0.0177 (Fisher's exact test), Q value = 0.033
Table S32. Gene #5: 'amp_2p24.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 5(2P24.3) MUTATED | 11 | 17 | 4 | 13 |
AMP PEAK 5(2P24.3) WILD-TYPE | 137 | 85 | 96 | 145 |
Figure S32. Get High-res Image Gene #5: 'amp_2p24.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D5V2.png)
P value = 0.0299 (Fisher's exact test), Q value = 0.053
Table S33. Gene #5: 'amp_2p24.3' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 5(2P24.3) MUTATED | 44 | 26 | 2 |
AMP PEAK 5(2P24.3) WILD-TYPE | 489 | 516 | 13 |
Figure S33. Get High-res Image Gene #5: 'amp_2p24.3' versus Molecular Subtype #5: 'CN_CNMF'
![](D5V5.png)
P value = 0.00551 (Fisher's exact test), Q value = 0.012
Table S34. Gene #5: 'amp_2p24.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 5(2P24.3) MUTATED | 23 | 8 | 7 |
AMP PEAK 5(2P24.3) WILD-TYPE | 210 | 227 | 185 |
Figure S34. Get High-res Image Gene #5: 'amp_2p24.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D5V9.png)
P value = 0.00774 (Fisher's exact test), Q value = 0.016
Table S35. Gene #5: 'amp_2p24.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 5(2P24.3) MUTATED | 20 | 10 | 8 |
AMP PEAK 5(2P24.3) WILD-TYPE | 183 | 180 | 259 |
Figure S35. Get High-res Image Gene #5: 'amp_2p24.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D5V10.png)
P value = 0.0289 (Fisher's exact test), Q value = 0.051
Table S36. Gene #5: 'amp_2p24.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 5(2P24.3) MUTATED | 8 | 5 | 10 |
AMP PEAK 5(2P24.3) WILD-TYPE | 214 | 179 | 93 |
Figure S36. Get High-res Image Gene #5: 'amp_2p24.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D5V12.png)
P value = 0.00047 (Fisher's exact test), Q value = 0.0013
Table S37. Gene #6: 'amp_3p25.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 6(3P25.3) MUTATED | 15 | 21 | 7 | 13 |
AMP PEAK 6(3P25.3) WILD-TYPE | 132 | 75 | 145 | 100 |
Figure S37. Get High-res Image Gene #6: 'amp_3p25.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D6V1.png)
P value = 0.0146 (Fisher's exact test), Q value = 0.028
Table S38. Gene #6: 'amp_3p25.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 6(3P25.3) MUTATED | 10 | 19 | 7 | 20 |
AMP PEAK 6(3P25.3) WILD-TYPE | 138 | 83 | 93 | 138 |
Figure S38. Get High-res Image Gene #6: 'amp_3p25.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D6V2.png)
P value = 0.0114 (Fisher's exact test), Q value = 0.022
Table S39. Gene #6: 'amp_3p25.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 6(3P25.3) MUTATED | 12 | 20 | 1 | 3 |
AMP PEAK 6(3P25.3) WILD-TYPE | 172 | 217 | 63 | 162 |
Figure S39. Get High-res Image Gene #6: 'amp_3p25.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D6V6.png)
P value = 0.0417 (Fisher's exact test), Q value = 0.071
Table S40. Gene #6: 'amp_3p25.3' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 6(3P25.3) MUTATED | 13 | 5 | 17 |
AMP PEAK 6(3P25.3) WILD-TYPE | 211 | 199 | 201 |
Figure S40. Get High-res Image Gene #6: 'amp_3p25.3' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D6V7.png)
P value = 0.0229 (Fisher's exact test), Q value = 0.041
Table S41. Gene #6: 'amp_3p25.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 6(3P25.3) MUTATED | 20 | 15 | 10 |
AMP PEAK 6(3P25.3) WILD-TYPE | 183 | 175 | 257 |
Figure S41. Get High-res Image Gene #6: 'amp_3p25.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D6V10.png)
P value = 0.00781 (Fisher's exact test), Q value = 0.016
Table S42. Gene #7: 'amp_3q26.33' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 7(3Q26.33) MUTATED | 27 | 28 | 19 | 27 |
AMP PEAK 7(3Q26.33) WILD-TYPE | 120 | 68 | 133 | 86 |
Figure S42. Get High-res Image Gene #7: 'amp_3q26.33' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D7V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S43. Gene #7: 'amp_3q26.33' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 7(3Q26.33) MUTATED | 108 | 22 | 2 |
AMP PEAK 7(3Q26.33) WILD-TYPE | 425 | 520 | 13 |
Figure S43. Get High-res Image Gene #7: 'amp_3q26.33' versus Molecular Subtype #5: 'CN_CNMF'
![](D7V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S44. Gene #7: 'amp_3q26.33' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 7(3Q26.33) MUTATED | 31 | 9 | 2 | 3 |
AMP PEAK 7(3Q26.33) WILD-TYPE | 153 | 228 | 62 | 162 |
Figure S44. Get High-res Image Gene #7: 'amp_3q26.33' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D7V6.png)
P value = 0.00985 (Fisher's exact test), Q value = 0.02
Table S45. Gene #7: 'amp_3q26.33' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 7(3Q26.33) MUTATED | 18 | 8 | 26 |
AMP PEAK 7(3Q26.33) WILD-TYPE | 206 | 196 | 192 |
Figure S45. Get High-res Image Gene #7: 'amp_3q26.33' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D7V7.png)
P value = 0.00691 (Fisher's exact test), Q value = 0.014
Table S46. Gene #7: 'amp_3q26.33' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
AMP PEAK 7(3Q26.33) MUTATED | 24 | 24 | 4 |
AMP PEAK 7(3Q26.33) WILD-TYPE | 210 | 230 | 154 |
Figure S46. Get High-res Image Gene #7: 'amp_3q26.33' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D7V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S47. Gene #7: 'amp_3q26.33' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 7(3Q26.33) MUTATED | 45 | 7 | 4 |
AMP PEAK 7(3Q26.33) WILD-TYPE | 188 | 228 | 188 |
Figure S47. Get High-res Image Gene #7: 'amp_3q26.33' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D7V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S48. Gene #7: 'amp_3q26.33' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 7(3Q26.33) MUTATED | 41 | 9 | 6 |
AMP PEAK 7(3Q26.33) WILD-TYPE | 162 | 181 | 261 |
Figure S48. Get High-res Image Gene #7: 'amp_3q26.33' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D7V10.png)
P value = 0.00348 (Fisher's exact test), Q value = 0.0079
Table S49. Gene #7: 'amp_3q26.33' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 7(3Q26.33) MUTATED | 10 | 7 | 1 | 3 |
AMP PEAK 7(3Q26.33) WILD-TYPE | 127 | 100 | 182 | 79 |
Figure S49. Get High-res Image Gene #7: 'amp_3q26.33' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D7V11.png)
P value = 0.0186 (Fisher's exact test), Q value = 0.035
Table S50. Gene #7: 'amp_3q26.33' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 7(3Q26.33) MUTATED | 9 | 3 | 9 |
AMP PEAK 7(3Q26.33) WILD-TYPE | 213 | 181 | 94 |
Figure S50. Get High-res Image Gene #7: 'amp_3q26.33' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D7V12.png)
P value = 0.0215 (Fisher's exact test), Q value = 0.04
Table S51. Gene #7: 'amp_3q26.33' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 7(3Q26.33) MUTATED | 14 | 4 | 3 |
AMP PEAK 7(3Q26.33) WILD-TYPE | 171 | 157 | 156 |
Figure S51. Get High-res Image Gene #7: 'amp_3q26.33' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D7V13.png)
P value = 0.00202 (Fisher's exact test), Q value = 0.0048
Table S52. Gene #7: 'amp_3q26.33' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 7(3Q26.33) MUTATED | 6 | 1 | 5 | 9 |
AMP PEAK 7(3Q26.33) WILD-TYPE | 85 | 136 | 183 | 80 |
Figure S52. Get High-res Image Gene #7: 'amp_3q26.33' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D7V14.png)
P value = 0.00066 (Fisher's exact test), Q value = 0.0018
Table S53. Gene #8: 'amp_4p16.3' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 8(4P16.3) MUTATED | 48 | 20 | 2 |
AMP PEAK 8(4P16.3) WILD-TYPE | 485 | 522 | 13 |
Figure S53. Get High-res Image Gene #8: 'amp_4p16.3' versus Molecular Subtype #5: 'CN_CNMF'
![](D8V5.png)
P value = 0.0038 (Fisher's exact test), Q value = 0.0085
Table S54. Gene #8: 'amp_4p16.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 8(4P16.3) MUTATED | 15 | 13 | 2 | 1 |
AMP PEAK 8(4P16.3) WILD-TYPE | 169 | 224 | 62 | 164 |
Figure S54. Get High-res Image Gene #8: 'amp_4p16.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D8V6.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00032
Table S55. Gene #8: 'amp_4p16.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 8(4P16.3) MUTATED | 25 | 10 | 3 |
AMP PEAK 8(4P16.3) WILD-TYPE | 208 | 225 | 189 |
Figure S55. Get High-res Image Gene #8: 'amp_4p16.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D8V9.png)
P value = 2e-04 (Fisher's exact test), Q value = 0.00059
Table S56. Gene #8: 'amp_4p16.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 8(4P16.3) MUTATED | 22 | 11 | 5 |
AMP PEAK 8(4P16.3) WILD-TYPE | 181 | 179 | 262 |
Figure S56. Get High-res Image Gene #8: 'amp_4p16.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D8V10.png)
P value = 0.00065 (Fisher's exact test), Q value = 0.0018
Table S57. Gene #9: 'amp_4q12' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 9(4Q12) MUTATED | 22 | 32 | 20 | 25 |
AMP PEAK 9(4Q12) WILD-TYPE | 125 | 64 | 132 | 88 |
Figure S57. Get High-res Image Gene #9: 'amp_4q12' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D9V1.png)
P value = 0.00323 (Fisher's exact test), Q value = 0.0074
Table S58. Gene #9: 'amp_4q12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 9(4Q12) MUTATED | 18 | 31 | 16 | 34 |
AMP PEAK 9(4Q12) WILD-TYPE | 130 | 71 | 84 | 124 |
Figure S58. Get High-res Image Gene #9: 'amp_4q12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D9V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S59. Gene #9: 'amp_4q12' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 9(4Q12) MUTATED | 100 | 35 | 3 |
AMP PEAK 9(4Q12) WILD-TYPE | 433 | 507 | 12 |
Figure S59. Get High-res Image Gene #9: 'amp_4q12' versus Molecular Subtype #5: 'CN_CNMF'
![](D9V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S60. Gene #9: 'amp_4q12' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 9(4Q12) MUTATED | 31 | 21 | 2 | 1 |
AMP PEAK 9(4Q12) WILD-TYPE | 153 | 216 | 62 | 164 |
Figure S60. Get High-res Image Gene #9: 'amp_4q12' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D9V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S61. Gene #9: 'amp_4q12' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 9(4Q12) MUTATED | 44 | 10 | 5 |
AMP PEAK 9(4Q12) WILD-TYPE | 189 | 225 | 187 |
Figure S61. Get High-res Image Gene #9: 'amp_4q12' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D9V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S62. Gene #9: 'amp_4q12' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 9(4Q12) MUTATED | 37 | 16 | 6 |
AMP PEAK 9(4Q12) WILD-TYPE | 166 | 174 | 261 |
Figure S62. Get High-res Image Gene #9: 'amp_4q12' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D9V10.png)
P value = 0.00302 (Fisher's exact test), Q value = 0.007
Table S63. Gene #9: 'amp_4q12' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 9(4Q12) MUTATED | 6 | 15 | 7 | 2 |
AMP PEAK 9(4Q12) WILD-TYPE | 131 | 92 | 176 | 80 |
Figure S63. Get High-res Image Gene #9: 'amp_4q12' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D9V11.png)
P value = 0.00016 (Fisher's exact test), Q value = 0.00048
Table S64. Gene #9: 'amp_4q12' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 9(4Q12) MUTATED | 7 | 7 | 16 |
AMP PEAK 9(4Q12) WILD-TYPE | 215 | 177 | 87 |
Figure S64. Get High-res Image Gene #9: 'amp_4q12' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D9V12.png)
P value = 0.00393 (Fisher's exact test), Q value = 0.0087
Table S65. Gene #9: 'amp_4q12' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 9(4Q12) MUTATED | 3 | 8 | 6 | 13 |
AMP PEAK 9(4Q12) WILD-TYPE | 88 | 129 | 182 | 76 |
Figure S65. Get High-res Image Gene #9: 'amp_4q12' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D9V14.png)
P value = 0.0344 (Fisher's exact test), Q value = 0.06
Table S66. Gene #10: 'amp_5p15.33' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 10(5P15.33) MUTATED | 24 | 9 | 9 | 11 |
AMP PEAK 10(5P15.33) WILD-TYPE | 123 | 87 | 143 | 102 |
Figure S66. Get High-res Image Gene #10: 'amp_5p15.33' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D10V1.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S67. Gene #10: 'amp_5p15.33' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 10(5P15.33) MUTATED | 55 | 19 | 2 |
AMP PEAK 10(5P15.33) WILD-TYPE | 478 | 523 | 13 |
Figure S67. Get High-res Image Gene #10: 'amp_5p15.33' versus Molecular Subtype #5: 'CN_CNMF'
![](D10V5.png)
P value = 0.0093 (Fisher's exact test), Q value = 0.019
Table S68. Gene #10: 'amp_5p15.33' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 10(5P15.33) MUTATED | 12 | 7 | 4 | 1 |
AMP PEAK 10(5P15.33) WILD-TYPE | 172 | 230 | 60 | 164 |
Figure S68. Get High-res Image Gene #10: 'amp_5p15.33' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D10V6.png)
P value = 6e-05 (Fisher's exact test), Q value = 2e-04
Table S69. Gene #10: 'amp_5p15.33' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 10(5P15.33) MUTATED | 21 | 3 | 3 |
AMP PEAK 10(5P15.33) WILD-TYPE | 212 | 232 | 189 |
Figure S69. Get High-res Image Gene #10: 'amp_5p15.33' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D10V9.png)
P value = 0.00033 (Fisher's exact test), Q value = 0.00094
Table S70. Gene #10: 'amp_5p15.33' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 10(5P15.33) MUTATED | 18 | 5 | 4 |
AMP PEAK 10(5P15.33) WILD-TYPE | 185 | 185 | 263 |
Figure S70. Get High-res Image Gene #10: 'amp_5p15.33' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D10V10.png)
P value = 0.0032 (Fisher's exact test), Q value = 0.0073
Table S71. Gene #10: 'amp_5p15.33' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 10(5P15.33) MUTATED | 3 | 4 | 9 |
AMP PEAK 10(5P15.33) WILD-TYPE | 219 | 180 | 94 |
Figure S71. Get High-res Image Gene #10: 'amp_5p15.33' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D10V12.png)
P value = 0.0374 (Fisher's exact test), Q value = 0.065
Table S72. Gene #10: 'amp_5p15.33' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 10(5P15.33) MUTATED | 1 | 5 | 3 | 7 |
AMP PEAK 10(5P15.33) WILD-TYPE | 90 | 132 | 185 | 82 |
Figure S72. Get High-res Image Gene #10: 'amp_5p15.33' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D10V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S73. Gene #11: 'amp_7p11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 11(7P11.2) MUTATED | 139 | 68 | 147 | 89 |
AMP PEAK 11(7P11.2) WILD-TYPE | 8 | 28 | 5 | 24 |
Figure S73. Get High-res Image Gene #11: 'amp_7p11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D11V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S74. Gene #11: 'amp_7p11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 11(7P11.2) MUTATED | 136 | 60 | 99 | 148 |
AMP PEAK 11(7P11.2) WILD-TYPE | 12 | 42 | 1 | 10 |
Figure S74. Get High-res Image Gene #11: 'amp_7p11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D11V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S75. Gene #11: 'amp_7p11.2' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
AMP PEAK 11(7P11.2) MUTATED | 151 | 146 | 73 | 110 |
AMP PEAK 11(7P11.2) WILD-TYPE | 5 | 37 | 14 | 10 |
Figure S75. Get High-res Image Gene #11: 'amp_7p11.2' versus Molecular Subtype #3: 'MIR_CNMF'
![](D11V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S76. Gene #11: 'amp_7p11.2' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 11(7P11.2) MUTATED | 234 | 120 | 126 |
AMP PEAK 11(7P11.2) WILD-TYPE | 59 | 4 | 3 |
Figure S76. Get High-res Image Gene #11: 'amp_7p11.2' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D11V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S77. Gene #11: 'amp_7p11.2' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 11(7P11.2) MUTATED | 519 | 106 | 10 |
AMP PEAK 11(7P11.2) WILD-TYPE | 14 | 436 | 5 |
Figure S77. Get High-res Image Gene #11: 'amp_7p11.2' versus Molecular Subtype #5: 'CN_CNMF'
![](D11V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S78. Gene #11: 'amp_7p11.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 11(7P11.2) MUTATED | 167 | 43 | 26 | 14 |
AMP PEAK 11(7P11.2) WILD-TYPE | 17 | 194 | 38 | 151 |
Figure S78. Get High-res Image Gene #11: 'amp_7p11.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D11V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S79. Gene #11: 'amp_7p11.2' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 11(7P11.2) MUTATED | 104 | 70 | 124 |
AMP PEAK 11(7P11.2) WILD-TYPE | 120 | 134 | 94 |
Figure S79. Get High-res Image Gene #11: 'amp_7p11.2' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D11V7.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00032
Table S80. Gene #11: 'amp_7p11.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
AMP PEAK 11(7P11.2) MUTATED | 120 | 128 | 50 |
AMP PEAK 11(7P11.2) WILD-TYPE | 114 | 126 | 108 |
Figure S80. Get High-res Image Gene #11: 'amp_7p11.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D11V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S81. Gene #11: 'amp_7p11.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 11(7P11.2) MUTATED | 185 | 37 | 37 |
AMP PEAK 11(7P11.2) WILD-TYPE | 48 | 198 | 155 |
Figure S81. Get High-res Image Gene #11: 'amp_7p11.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D11V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S82. Gene #11: 'amp_7p11.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 11(7P11.2) MUTATED | 183 | 30 | 46 |
AMP PEAK 11(7P11.2) WILD-TYPE | 20 | 160 | 221 |
Figure S82. Get High-res Image Gene #11: 'amp_7p11.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D11V10.png)
P value = 0.00032 (Fisher's exact test), Q value = 0.00092
Table S83. Gene #11: 'amp_7p11.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 11(7P11.2) MUTATED | 44 | 37 | 32 | 13 |
AMP PEAK 11(7P11.2) WILD-TYPE | 93 | 70 | 151 | 69 |
Figure S83. Get High-res Image Gene #11: 'amp_7p11.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D11V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S84. Gene #11: 'amp_7p11.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 11(7P11.2) MUTATED | 37 | 28 | 61 |
AMP PEAK 11(7P11.2) WILD-TYPE | 185 | 156 | 42 |
Figure S84. Get High-res Image Gene #11: 'amp_7p11.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D11V12.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00014
Table S85. Gene #11: 'amp_7p11.2' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 11(7P11.2) MUTATED | 66 | 26 | 33 |
AMP PEAK 11(7P11.2) WILD-TYPE | 119 | 135 | 126 |
Figure S85. Get High-res Image Gene #11: 'amp_7p11.2' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D11V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S86. Gene #11: 'amp_7p11.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 11(7P11.2) MUTATED | 13 | 22 | 32 | 58 |
AMP PEAK 11(7P11.2) WILD-TYPE | 78 | 115 | 156 | 31 |
Figure S86. Get High-res Image Gene #11: 'amp_7p11.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D11V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S87. Gene #12: 'amp_7q11.21' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 12(7Q11.21) MUTATED | 133 | 64 | 124 | 82 |
AMP PEAK 12(7Q11.21) WILD-TYPE | 14 | 32 | 28 | 31 |
Figure S87. Get High-res Image Gene #12: 'amp_7q11.21' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D12V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S88. Gene #12: 'amp_7q11.21' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 12(7Q11.21) MUTATED | 129 | 55 | 82 | 137 |
AMP PEAK 12(7Q11.21) WILD-TYPE | 19 | 47 | 18 | 21 |
Figure S88. Get High-res Image Gene #12: 'amp_7q11.21' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D12V2.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S89. Gene #12: 'amp_7q11.21' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
AMP PEAK 12(7Q11.21) MUTATED | 141 | 133 | 63 | 103 |
AMP PEAK 12(7Q11.21) WILD-TYPE | 15 | 50 | 24 | 17 |
Figure S89. Get High-res Image Gene #12: 'amp_7q11.21' versus Molecular Subtype #3: 'MIR_CNMF'
![](D12V3.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00014
Table S90. Gene #12: 'amp_7q11.21' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 12(7Q11.21) MUTATED | 216 | 114 | 110 |
AMP PEAK 12(7Q11.21) WILD-TYPE | 77 | 10 | 19 |
Figure S90. Get High-res Image Gene #12: 'amp_7q11.21' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D12V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S91. Gene #12: 'amp_7q11.21' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 12(7Q11.21) MUTATED | 475 | 96 | 10 |
AMP PEAK 12(7Q11.21) WILD-TYPE | 58 | 446 | 5 |
Figure S91. Get High-res Image Gene #12: 'amp_7q11.21' versus Molecular Subtype #5: 'CN_CNMF'
![](D12V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S92. Gene #12: 'amp_7q11.21' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 12(7Q11.21) MUTATED | 155 | 39 | 23 | 14 |
AMP PEAK 12(7Q11.21) WILD-TYPE | 29 | 198 | 41 | 151 |
Figure S92. Get High-res Image Gene #12: 'amp_7q11.21' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D12V6.png)
P value = 0.00112 (Fisher's exact test), Q value = 0.0029
Table S93. Gene #12: 'amp_7q11.21' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 12(7Q11.21) MUTATED | 96 | 67 | 110 |
AMP PEAK 12(7Q11.21) WILD-TYPE | 128 | 137 | 108 |
Figure S93. Get High-res Image Gene #12: 'amp_7q11.21' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D12V7.png)
P value = 0.00095 (Fisher's exact test), Q value = 0.0025
Table S94. Gene #12: 'amp_7q11.21' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
AMP PEAK 12(7Q11.21) MUTATED | 111 | 115 | 47 |
AMP PEAK 12(7Q11.21) WILD-TYPE | 123 | 139 | 111 |
Figure S94. Get High-res Image Gene #12: 'amp_7q11.21' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D12V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S95. Gene #12: 'amp_7q11.21' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 12(7Q11.21) MUTATED | 164 | 34 | 37 |
AMP PEAK 12(7Q11.21) WILD-TYPE | 69 | 201 | 155 |
Figure S95. Get High-res Image Gene #12: 'amp_7q11.21' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D12V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S96. Gene #12: 'amp_7q11.21' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 12(7Q11.21) MUTATED | 163 | 26 | 46 |
AMP PEAK 12(7Q11.21) WILD-TYPE | 40 | 164 | 221 |
Figure S96. Get High-res Image Gene #12: 'amp_7q11.21' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D12V10.png)
P value = 0.00447 (Fisher's exact test), Q value = 0.0098
Table S97. Gene #12: 'amp_7q11.21' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 12(7Q11.21) MUTATED | 40 | 32 | 31 | 12 |
AMP PEAK 12(7Q11.21) WILD-TYPE | 97 | 75 | 152 | 70 |
Figure S97. Get High-res Image Gene #12: 'amp_7q11.21' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D12V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S98. Gene #12: 'amp_7q11.21' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 12(7Q11.21) MUTATED | 34 | 27 | 54 |
AMP PEAK 12(7Q11.21) WILD-TYPE | 188 | 157 | 49 |
Figure S98. Get High-res Image Gene #12: 'amp_7q11.21' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D12V12.png)
P value = 0.00023 (Fisher's exact test), Q value = 0.00067
Table S99. Gene #12: 'amp_7q11.21' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 12(7Q11.21) MUTATED | 59 | 22 | 33 |
AMP PEAK 12(7Q11.21) WILD-TYPE | 126 | 139 | 126 |
Figure S99. Get High-res Image Gene #12: 'amp_7q11.21' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D12V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S100. Gene #12: 'amp_7q11.21' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 12(7Q11.21) MUTATED | 11 | 20 | 32 | 51 |
AMP PEAK 12(7Q11.21) WILD-TYPE | 80 | 117 | 156 | 38 |
Figure S100. Get High-res Image Gene #12: 'amp_7q11.21' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D12V14.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00014
Table S101. Gene #13: 'amp_7q21.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 13(7Q21.2) MUTATED | 131 | 64 | 134 | 89 |
AMP PEAK 13(7Q21.2) WILD-TYPE | 16 | 32 | 18 | 24 |
Figure S101. Get High-res Image Gene #13: 'amp_7q21.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D13V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S102. Gene #13: 'amp_7q21.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 13(7Q21.2) MUTATED | 126 | 62 | 89 | 141 |
AMP PEAK 13(7Q21.2) WILD-TYPE | 22 | 40 | 11 | 17 |
Figure S102. Get High-res Image Gene #13: 'amp_7q21.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D13V2.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00032
Table S103. Gene #13: 'amp_7q21.2' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 13(7Q21.2) MUTATED | 224 | 111 | 117 |
AMP PEAK 13(7Q21.2) WILD-TYPE | 69 | 13 | 12 |
Figure S103. Get High-res Image Gene #13: 'amp_7q21.2' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D13V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S104. Gene #13: 'amp_7q21.2' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 13(7Q21.2) MUTATED | 486 | 139 | 11 |
AMP PEAK 13(7Q21.2) WILD-TYPE | 47 | 403 | 4 |
Figure S104. Get High-res Image Gene #13: 'amp_7q21.2' versus Molecular Subtype #5: 'CN_CNMF'
![](D13V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S105. Gene #13: 'amp_7q21.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 13(7Q21.2) MUTATED | 158 | 69 | 25 | 24 |
AMP PEAK 13(7Q21.2) WILD-TYPE | 26 | 168 | 39 | 141 |
Figure S105. Get High-res Image Gene #13: 'amp_7q21.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D13V6.png)
P value = 0.00488 (Fisher's exact test), Q value = 0.011
Table S106. Gene #13: 'amp_7q21.2' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 13(7Q21.2) MUTATED | 107 | 81 | 121 |
AMP PEAK 13(7Q21.2) WILD-TYPE | 117 | 123 | 97 |
Figure S106. Get High-res Image Gene #13: 'amp_7q21.2' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D13V7.png)
P value = 0.0122 (Fisher's exact test), Q value = 0.024
Table S107. Gene #13: 'amp_7q21.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
AMP PEAK 13(7Q21.2) MUTATED | 124 | 125 | 60 |
AMP PEAK 13(7Q21.2) WILD-TYPE | 110 | 129 | 98 |
Figure S107. Get High-res Image Gene #13: 'amp_7q21.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D13V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S108. Gene #13: 'amp_7q21.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 13(7Q21.2) MUTATED | 175 | 57 | 50 |
AMP PEAK 13(7Q21.2) WILD-TYPE | 58 | 178 | 142 |
Figure S108. Get High-res Image Gene #13: 'amp_7q21.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D13V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S109. Gene #13: 'amp_7q21.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 13(7Q21.2) MUTATED | 171 | 48 | 63 |
AMP PEAK 13(7Q21.2) WILD-TYPE | 32 | 142 | 204 |
Figure S109. Get High-res Image Gene #13: 'amp_7q21.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D13V10.png)
P value = 0.00406 (Fisher's exact test), Q value = 0.009
Table S110. Gene #13: 'amp_7q21.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 13(7Q21.2) MUTATED | 51 | 41 | 46 | 16 |
AMP PEAK 13(7Q21.2) WILD-TYPE | 86 | 66 | 137 | 66 |
Figure S110. Get High-res Image Gene #13: 'amp_7q21.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D13V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S111. Gene #13: 'amp_7q21.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 13(7Q21.2) MUTATED | 52 | 43 | 59 |
AMP PEAK 13(7Q21.2) WILD-TYPE | 170 | 141 | 44 |
Figure S111. Get High-res Image Gene #13: 'amp_7q21.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D13V12.png)
P value = 0.00082 (Fisher's exact test), Q value = 0.0022
Table S112. Gene #13: 'amp_7q21.2' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 13(7Q21.2) MUTATED | 72 | 33 | 48 |
AMP PEAK 13(7Q21.2) WILD-TYPE | 113 | 128 | 111 |
Figure S112. Get High-res Image Gene #13: 'amp_7q21.2' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D13V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S113. Gene #13: 'amp_7q21.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 13(7Q21.2) MUTATED | 20 | 28 | 50 | 55 |
AMP PEAK 13(7Q21.2) WILD-TYPE | 71 | 109 | 138 | 34 |
Figure S113. Get High-res Image Gene #13: 'amp_7q21.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D13V14.png)
P value = 0.00114 (Fisher's exact test), Q value = 0.0029
Table S114. Gene #14: 'amp_7q31.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 14(7Q31.2) MUTATED | 131 | 66 | 126 | 89 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 16 | 30 | 26 | 24 |
Figure S114. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D14V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S115. Gene #14: 'amp_7q31.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 14(7Q31.2) MUTATED | 130 | 63 | 83 | 136 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 18 | 39 | 17 | 22 |
Figure S115. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D14V2.png)
P value = 0.0137 (Fisher's exact test), Q value = 0.026
Table S116. Gene #14: 'amp_7q31.2' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
AMP PEAK 14(7Q31.2) MUTATED | 137 | 136 | 71 | 101 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 19 | 47 | 16 | 19 |
Figure S116. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #3: 'MIR_CNMF'
![](D14V3.png)
P value = 0.00906 (Fisher's exact test), Q value = 0.018
Table S117. Gene #14: 'amp_7q31.2' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 14(7Q31.2) MUTATED | 225 | 109 | 111 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 68 | 15 | 18 |
Figure S117. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D14V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S118. Gene #14: 'amp_7q31.2' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 14(7Q31.2) MUTATED | 478 | 157 | 11 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 55 | 385 | 4 |
Figure S118. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #5: 'CN_CNMF'
![](D14V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S119. Gene #14: 'amp_7q31.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 14(7Q31.2) MUTATED | 157 | 82 | 26 | 28 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 27 | 155 | 38 | 137 |
Figure S119. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D14V6.png)
P value = 0.00858 (Fisher's exact test), Q value = 0.017
Table S120. Gene #14: 'amp_7q31.2' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 14(7Q31.2) MUTATED | 114 | 84 | 122 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 110 | 120 | 96 |
Figure S120. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D14V7.png)
P value = 0.025 (Fisher's exact test), Q value = 0.045
Table S121. Gene #14: 'amp_7q31.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
AMP PEAK 14(7Q31.2) MUTATED | 127 | 129 | 64 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 107 | 125 | 94 |
Figure S121. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D14V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S122. Gene #14: 'amp_7q31.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 14(7Q31.2) MUTATED | 172 | 68 | 56 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 61 | 167 | 136 |
Figure S122. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D14V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S123. Gene #14: 'amp_7q31.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 14(7Q31.2) MUTATED | 168 | 57 | 71 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 35 | 133 | 196 |
Figure S123. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D14V10.png)
P value = 0.0102 (Fisher's exact test), Q value = 0.02
Table S124. Gene #14: 'amp_7q31.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 14(7Q31.2) MUTATED | 56 | 44 | 52 | 20 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 81 | 63 | 131 | 62 |
Figure S124. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D14V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S125. Gene #14: 'amp_7q31.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 14(7Q31.2) MUTATED | 65 | 48 | 59 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 157 | 136 | 44 |
Figure S125. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D14V12.png)
P value = 0.00859 (Fisher's exact test), Q value = 0.017
Table S126. Gene #14: 'amp_7q31.2' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 14(7Q31.2) MUTATED | 76 | 41 | 54 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 109 | 120 | 105 |
Figure S126. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D14V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S127. Gene #14: 'amp_7q31.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 14(7Q31.2) MUTATED | 24 | 35 | 57 | 55 |
AMP PEAK 14(7Q31.2) WILD-TYPE | 67 | 102 | 131 | 34 |
Figure S127. Get High-res Image Gene #14: 'amp_7q31.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D14V14.png)
P value = 0.00022 (Fisher's exact test), Q value = 0.00064
Table S128. Gene #15: 'amp_7q32.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 15(7Q32.3) MUTATED | 131 | 64 | 129 | 92 |
AMP PEAK 15(7Q32.3) WILD-TYPE | 16 | 32 | 23 | 21 |
Figure S128. Get High-res Image Gene #15: 'amp_7q32.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D15V1.png)
P value = 6e-05 (Fisher's exact test), Q value = 2e-04
Table S129. Gene #15: 'amp_7q32.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 15(7Q32.3) MUTATED | 127 | 66 | 86 | 137 |
AMP PEAK 15(7Q32.3) WILD-TYPE | 21 | 36 | 14 | 21 |
Figure S129. Get High-res Image Gene #15: 'amp_7q32.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D15V2.png)
P value = 0.00471 (Fisher's exact test), Q value = 0.01
Table S130. Gene #15: 'amp_7q32.3' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 15(7Q32.3) MUTATED | 227 | 110 | 113 |
AMP PEAK 15(7Q32.3) WILD-TYPE | 66 | 14 | 16 |
Figure S130. Get High-res Image Gene #15: 'amp_7q32.3' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D15V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S131. Gene #15: 'amp_7q32.3' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 15(7Q32.3) MUTATED | 479 | 169 | 11 |
AMP PEAK 15(7Q32.3) WILD-TYPE | 54 | 373 | 4 |
Figure S131. Get High-res Image Gene #15: 'amp_7q32.3' versus Molecular Subtype #5: 'CN_CNMF'
![](D15V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S132. Gene #15: 'amp_7q32.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 15(7Q32.3) MUTATED | 157 | 87 | 27 | 29 |
AMP PEAK 15(7Q32.3) WILD-TYPE | 27 | 150 | 37 | 136 |
Figure S132. Get High-res Image Gene #15: 'amp_7q32.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D15V6.png)
P value = 0.00531 (Fisher's exact test), Q value = 0.011
Table S133. Gene #15: 'amp_7q32.3' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 15(7Q32.3) MUTATED | 118 | 87 | 127 |
AMP PEAK 15(7Q32.3) WILD-TYPE | 106 | 117 | 91 |
Figure S133. Get High-res Image Gene #15: 'amp_7q32.3' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D15V7.png)
P value = 0.0159 (Fisher's exact test), Q value = 0.03
Table S134. Gene #15: 'amp_7q32.3' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
AMP PEAK 15(7Q32.3) MUTATED | 132 | 134 | 66 |
AMP PEAK 15(7Q32.3) WILD-TYPE | 102 | 120 | 92 |
Figure S134. Get High-res Image Gene #15: 'amp_7q32.3' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D15V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S135. Gene #15: 'amp_7q32.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 15(7Q32.3) MUTATED | 172 | 72 | 60 |
AMP PEAK 15(7Q32.3) WILD-TYPE | 61 | 163 | 132 |
Figure S135. Get High-res Image Gene #15: 'amp_7q32.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D15V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S136. Gene #15: 'amp_7q32.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 15(7Q32.3) MUTATED | 168 | 60 | 76 |
AMP PEAK 15(7Q32.3) WILD-TYPE | 35 | 130 | 191 |
Figure S136. Get High-res Image Gene #15: 'amp_7q32.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D15V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S137. Gene #15: 'amp_7q32.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 15(7Q32.3) MUTATED | 68 | 52 | 60 |
AMP PEAK 15(7Q32.3) WILD-TYPE | 154 | 132 | 43 |
Figure S137. Get High-res Image Gene #15: 'amp_7q32.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D15V12.png)
P value = 0.022 (Fisher's exact test), Q value = 0.04
Table S138. Gene #15: 'amp_7q32.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 15(7Q32.3) MUTATED | 78 | 45 | 56 |
AMP PEAK 15(7Q32.3) WILD-TYPE | 107 | 116 | 103 |
Figure S138. Get High-res Image Gene #15: 'amp_7q32.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D15V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S139. Gene #15: 'amp_7q32.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 15(7Q32.3) MUTATED | 28 | 37 | 59 | 55 |
AMP PEAK 15(7Q32.3) WILD-TYPE | 63 | 100 | 129 | 34 |
Figure S139. Get High-res Image Gene #15: 'amp_7q32.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D15V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S140. Gene #16: 'amp_8q24.21' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 16(8Q24.21) MUTATED | 8 | 25 | 7 | 21 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 139 | 71 | 145 | 92 |
Figure S140. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D16V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S141. Gene #16: 'amp_8q24.21' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 16(8Q24.21) MUTATED | 10 | 29 | 6 | 16 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 138 | 73 | 94 | 142 |
Figure S141. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D16V2.png)
P value = 0.0161 (Fisher's exact test), Q value = 0.03
Table S142. Gene #16: 'amp_8q24.21' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
AMP PEAK 16(8Q24.21) MUTATED | 11 | 32 | 11 | 10 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 145 | 151 | 76 | 110 |
Figure S142. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #3: 'MIR_CNMF'
![](D16V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S143. Gene #16: 'amp_8q24.21' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 16(8Q24.21) MUTATED | 50 | 114 | 5 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 483 | 428 | 10 |
Figure S143. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #5: 'CN_CNMF'
![](D16V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S144. Gene #16: 'amp_8q24.21' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 16(8Q24.21) MUTATED | 13 | 86 | 5 | 10 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 171 | 151 | 59 | 155 |
Figure S144. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D16V6.png)
P value = 0.00061 (Fisher's exact test), Q value = 0.0017
Table S145. Gene #16: 'amp_8q24.21' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 16(8Q24.21) MUTATED | 29 | 61 | 31 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 204 | 174 | 161 |
Figure S145. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D16V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S146. Gene #16: 'amp_8q24.21' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 16(8Q24.21) MUTATED | 21 | 63 | 37 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 182 | 127 | 230 |
Figure S146. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D16V10.png)
P value = 0.00089 (Fisher's exact test), Q value = 0.0023
Table S147. Gene #16: 'amp_8q24.21' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 16(8Q24.21) MUTATED | 58 | 30 | 10 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 164 | 154 | 93 |
Figure S147. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D16V12.png)
P value = 6e-05 (Fisher's exact test), Q value = 2e-04
Table S148. Gene #16: 'amp_8q24.21' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 16(8Q24.21) MUTATED | 33 | 21 | 36 | 8 |
AMP PEAK 16(8Q24.21) WILD-TYPE | 58 | 116 | 152 | 81 |
Figure S148. Get High-res Image Gene #16: 'amp_8q24.21' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D16V14.png)
P value = 0.00652 (Fisher's exact test), Q value = 0.013
Table S149. Gene #17: 'amp_9q34.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 17(9Q34.3) MUTATED | 24 | 28 | 18 | 17 |
AMP PEAK 17(9Q34.3) WILD-TYPE | 123 | 68 | 134 | 96 |
Figure S149. Get High-res Image Gene #17: 'amp_9q34.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D17V1.png)
P value = 0.00608 (Fisher's exact test), Q value = 0.013
Table S150. Gene #17: 'amp_9q34.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 17(9Q34.3) MUTATED | 23 | 28 | 9 | 27 |
AMP PEAK 17(9Q34.3) WILD-TYPE | 125 | 74 | 91 | 131 |
Figure S150. Get High-res Image Gene #17: 'amp_9q34.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D17V2.png)
P value = 0.00186 (Fisher's exact test), Q value = 0.0045
Table S151. Gene #17: 'amp_9q34.3' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 17(9Q34.3) MUTATED | 84 | 52 | 4 |
AMP PEAK 17(9Q34.3) WILD-TYPE | 449 | 490 | 11 |
Figure S151. Get High-res Image Gene #17: 'amp_9q34.3' versus Molecular Subtype #5: 'CN_CNMF'
![](D17V5.png)
P value = 0.0397 (Fisher's exact test), Q value = 0.068
Table S152. Gene #17: 'amp_9q34.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 17(9Q34.3) MUTATED | 21 | 30 | 3 | 9 |
AMP PEAK 17(9Q34.3) WILD-TYPE | 163 | 207 | 61 | 156 |
Figure S152. Get High-res Image Gene #17: 'amp_9q34.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D17V6.png)
P value = 0.0305 (Fisher's exact test), Q value = 0.053
Table S153. Gene #17: 'amp_9q34.3' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 17(9Q34.3) MUTATED | 15 | 19 | 31 |
AMP PEAK 17(9Q34.3) WILD-TYPE | 209 | 185 | 187 |
Figure S153. Get High-res Image Gene #17: 'amp_9q34.3' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D17V7.png)
P value = 0.0108 (Fisher's exact test), Q value = 0.021
Table S154. Gene #17: 'amp_9q34.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 17(9Q34.3) MUTATED | 37 | 21 | 14 |
AMP PEAK 17(9Q34.3) WILD-TYPE | 196 | 214 | 178 |
Figure S154. Get High-res Image Gene #17: 'amp_9q34.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D17V9.png)
P value = 0.0177 (Fisher's exact test), Q value = 0.033
Table S155. Gene #17: 'amp_9q34.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 17(9Q34.3) MUTATED | 31 | 22 | 19 |
AMP PEAK 17(9Q34.3) WILD-TYPE | 172 | 168 | 248 |
Figure S155. Get High-res Image Gene #17: 'amp_9q34.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D17V10.png)
P value = 0.00015 (Fisher's exact test), Q value = 0.00046
Table S156. Gene #18: 'amp_10p15.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 18(10P15.1) MUTATED | 1 | 8 | 1 | 8 |
AMP PEAK 18(10P15.1) WILD-TYPE | 146 | 88 | 151 | 105 |
Figure S156. Get High-res Image Gene #18: 'amp_10p15.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D18V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
Table S157. Gene #18: 'amp_10p15.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 18(10P15.1) MUTATED | 2 | 13 | 1 | 2 |
AMP PEAK 18(10P15.1) WILD-TYPE | 146 | 89 | 99 | 156 |
Figure S157. Get High-res Image Gene #18: 'amp_10p15.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D18V2.png)
P value = 0.00545 (Fisher's exact test), Q value = 0.012
Table S158. Gene #18: 'amp_10p15.1' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
AMP PEAK 18(10P15.1) MUTATED | 1 | 12 | 3 | 1 |
AMP PEAK 18(10P15.1) WILD-TYPE | 155 | 171 | 84 | 119 |
Figure S158. Get High-res Image Gene #18: 'amp_10p15.1' versus Molecular Subtype #3: 'MIR_CNMF'
![](D18V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S159. Gene #18: 'amp_10p15.1' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 18(10P15.1) MUTATED | 6 | 82 | 0 |
AMP PEAK 18(10P15.1) WILD-TYPE | 527 | 460 | 15 |
Figure S159. Get High-res Image Gene #18: 'amp_10p15.1' versus Molecular Subtype #5: 'CN_CNMF'
![](D18V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S160. Gene #18: 'amp_10p15.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 18(10P15.1) MUTATED | 2 | 65 | 4 | 0 |
AMP PEAK 18(10P15.1) WILD-TYPE | 182 | 172 | 60 | 165 |
Figure S160. Get High-res Image Gene #18: 'amp_10p15.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D18V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S161. Gene #18: 'amp_10p15.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 18(10P15.1) MUTATED | 9 | 45 | 18 |
AMP PEAK 18(10P15.1) WILD-TYPE | 224 | 190 | 174 |
Figure S161. Get High-res Image Gene #18: 'amp_10p15.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D18V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S162. Gene #18: 'amp_10p15.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 18(10P15.1) MUTATED | 3 | 50 | 19 |
AMP PEAK 18(10P15.1) WILD-TYPE | 200 | 140 | 248 |
Figure S162. Get High-res Image Gene #18: 'amp_10p15.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D18V10.png)
P value = 0.00045 (Fisher's exact test), Q value = 0.0013
Table S163. Gene #18: 'amp_10p15.1' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 18(10P15.1) MUTATED | 18 | 26 | 21 | 3 |
AMP PEAK 18(10P15.1) WILD-TYPE | 119 | 81 | 162 | 79 |
Figure S163. Get High-res Image Gene #18: 'amp_10p15.1' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D18V11.png)
P value = 0.00088 (Fisher's exact test), Q value = 0.0023
Table S164. Gene #18: 'amp_10p15.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 18(10P15.1) MUTATED | 25 | 15 | 21 | 7 |
AMP PEAK 18(10P15.1) WILD-TYPE | 66 | 122 | 167 | 82 |
Figure S164. Get High-res Image Gene #18: 'amp_10p15.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D18V14.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00051
Table S165. Gene #19: 'amp_11p13' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 19(11P13) MUTATED | 5 | 9 | 0 | 20 |
AMP PEAK 19(11P13) WILD-TYPE | 179 | 228 | 64 | 145 |
Figure S165. Get High-res Image Gene #19: 'amp_11p13' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D19V6.png)
P value = 0.0225 (Fisher's exact test), Q value = 0.041
Table S166. Gene #19: 'amp_11p13' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 19(11P13) MUTATED | 5 | 9 | 15 | 0 |
AMP PEAK 19(11P13) WILD-TYPE | 86 | 128 | 173 | 89 |
Figure S166. Get High-res Image Gene #19: 'amp_11p13' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D19V14.png)
P value = 0.00403 (Fisher's exact test), Q value = 0.0089
Table S167. Gene #20: 'amp_11q24.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 20(11Q24.1) MUTATED | 4 | 7 | 2 | 11 |
AMP PEAK 20(11Q24.1) WILD-TYPE | 143 | 89 | 150 | 102 |
Figure S167. Get High-res Image Gene #20: 'amp_11q24.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D20V1.png)
P value = 0.00771 (Fisher's exact test), Q value = 0.016
Table S168. Gene #20: 'amp_11q24.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 20(11Q24.1) MUTATED | 4 | 11 | 1 | 8 |
AMP PEAK 20(11Q24.1) WILD-TYPE | 144 | 91 | 99 | 150 |
Figure S168. Get High-res Image Gene #20: 'amp_11q24.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D20V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S169. Gene #20: 'amp_11q24.1' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 20(11Q24.1) MUTATED | 20 | 90 | 2 |
AMP PEAK 20(11Q24.1) WILD-TYPE | 513 | 452 | 13 |
Figure S169. Get High-res Image Gene #20: 'amp_11q24.1' versus Molecular Subtype #5: 'CN_CNMF'
![](D20V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S170. Gene #20: 'amp_11q24.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 20(11Q24.1) MUTATED | 10 | 52 | 2 | 29 |
AMP PEAK 20(11Q24.1) WILD-TYPE | 174 | 185 | 62 | 136 |
Figure S170. Get High-res Image Gene #20: 'amp_11q24.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D20V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S171. Gene #20: 'amp_11q24.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 20(11Q24.1) MUTATED | 14 | 50 | 29 |
AMP PEAK 20(11Q24.1) WILD-TYPE | 219 | 185 | 163 |
Figure S171. Get High-res Image Gene #20: 'amp_11q24.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D20V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S172. Gene #20: 'amp_11q24.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 20(11Q24.1) MUTATED | 8 | 39 | 46 |
AMP PEAK 20(11Q24.1) WILD-TYPE | 195 | 151 | 221 |
Figure S172. Get High-res Image Gene #20: 'amp_11q24.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D20V10.png)
P value = 0.0437 (Fisher's exact test), Q value = 0.074
Table S173. Gene #20: 'amp_11q24.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 20(11Q24.1) MUTATED | 20 | 24 | 36 | 7 |
AMP PEAK 20(11Q24.1) WILD-TYPE | 71 | 113 | 152 | 82 |
Figure S173. Get High-res Image Gene #20: 'amp_11q24.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D20V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S174. Gene #21: 'amp_12p13.32' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 21(12P13.32) MUTATED | 23 | 59 | 1 | 4 |
AMP PEAK 21(12P13.32) WILD-TYPE | 161 | 178 | 63 | 161 |
Figure S174. Get High-res Image Gene #21: 'amp_12p13.32' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D21V6.png)
P value = 0.00245 (Fisher's exact test), Q value = 0.0058
Table S175. Gene #21: 'amp_12p13.32' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 21(12P13.32) MUTATED | 20 | 22 | 43 |
AMP PEAK 21(12P13.32) WILD-TYPE | 204 | 182 | 175 |
Figure S175. Get High-res Image Gene #21: 'amp_12p13.32' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D21V7.png)
P value = 0.012 (Fisher's exact test), Q value = 0.023
Table S176. Gene #21: 'amp_12p13.32' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
AMP PEAK 21(12P13.32) MUTATED | 31 | 43 | 11 |
AMP PEAK 21(12P13.32) WILD-TYPE | 203 | 211 | 147 |
Figure S176. Get High-res Image Gene #21: 'amp_12p13.32' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D21V8.png)
P value = 0.00351 (Fisher's exact test), Q value = 0.0079
Table S177. Gene #21: 'amp_12p13.32' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 21(12P13.32) MUTATED | 35 | 42 | 14 |
AMP PEAK 21(12P13.32) WILD-TYPE | 198 | 193 | 178 |
Figure S177. Get High-res Image Gene #21: 'amp_12p13.32' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D21V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S178. Gene #21: 'amp_12p13.32' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 21(12P13.32) MUTATED | 29 | 43 | 19 |
AMP PEAK 21(12P13.32) WILD-TYPE | 174 | 147 | 248 |
Figure S178. Get High-res Image Gene #21: 'amp_12p13.32' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D21V10.png)
P value = 0.00319 (Fisher's exact test), Q value = 0.0073
Table S179. Gene #21: 'amp_12p13.32' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 21(12P13.32) MUTATED | 17 | 26 | 16 | 9 |
AMP PEAK 21(12P13.32) WILD-TYPE | 120 | 81 | 167 | 73 |
Figure S179. Get High-res Image Gene #21: 'amp_12p13.32' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D21V11.png)
P value = 0.00341 (Fisher's exact test), Q value = 0.0078
Table S180. Gene #21: 'amp_12p13.32' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 21(12P13.32) MUTATED | 35 | 13 | 20 |
AMP PEAK 21(12P13.32) WILD-TYPE | 187 | 171 | 83 |
Figure S180. Get High-res Image Gene #21: 'amp_12p13.32' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D21V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S181. Gene #22: 'amp_12q14.1' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 22(12Q14.1) MUTATED | 137 | 32 | 2 |
AMP PEAK 22(12Q14.1) WILD-TYPE | 396 | 510 | 13 |
Figure S181. Get High-res Image Gene #22: 'amp_12q14.1' versus Molecular Subtype #5: 'CN_CNMF'
![](D22V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S182. Gene #22: 'amp_12q14.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 22(12Q14.1) MUTATED | 42 | 16 | 3 | 5 |
AMP PEAK 22(12Q14.1) WILD-TYPE | 142 | 221 | 61 | 160 |
Figure S182. Get High-res Image Gene #22: 'amp_12q14.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D22V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S183. Gene #22: 'amp_12q14.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 22(12Q14.1) MUTATED | 64 | 11 | 4 |
AMP PEAK 22(12Q14.1) WILD-TYPE | 169 | 224 | 188 |
Figure S183. Get High-res Image Gene #22: 'amp_12q14.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D22V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S184. Gene #22: 'amp_12q14.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 22(12Q14.1) MUTATED | 58 | 13 | 8 |
AMP PEAK 22(12Q14.1) WILD-TYPE | 145 | 177 | 259 |
Figure S184. Get High-res Image Gene #22: 'amp_12q14.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D22V10.png)
P value = 0.0028 (Fisher's exact test), Q value = 0.0065
Table S185. Gene #22: 'amp_12q14.1' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 22(12Q14.1) MUTATED | 13 | 15 | 6 | 3 |
AMP PEAK 22(12Q14.1) WILD-TYPE | 124 | 92 | 177 | 79 |
Figure S185. Get High-res Image Gene #22: 'amp_12q14.1' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D22V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S186. Gene #22: 'amp_12q14.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 22(12Q14.1) MUTATED | 10 | 5 | 22 |
AMP PEAK 22(12Q14.1) WILD-TYPE | 212 | 179 | 81 |
Figure S186. Get High-res Image Gene #22: 'amp_12q14.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D22V12.png)
P value = 0.0419 (Fisher's exact test), Q value = 0.071
Table S187. Gene #22: 'amp_12q14.1' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 22(12Q14.1) MUTATED | 21 | 8 | 8 |
AMP PEAK 22(12Q14.1) WILD-TYPE | 164 | 153 | 151 |
Figure S187. Get High-res Image Gene #22: 'amp_12q14.1' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D22V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S188. Gene #22: 'amp_12q14.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 22(12Q14.1) MUTATED | 6 | 5 | 7 | 19 |
AMP PEAK 22(12Q14.1) WILD-TYPE | 85 | 132 | 181 | 70 |
Figure S188. Get High-res Image Gene #22: 'amp_12q14.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D22V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S189. Gene #23: 'amp_12q15' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 23(12Q15) MUTATED | 98 | 13 | 0 |
AMP PEAK 23(12Q15) WILD-TYPE | 435 | 529 | 15 |
Figure S189. Get High-res Image Gene #23: 'amp_12q15' versus Molecular Subtype #5: 'CN_CNMF'
![](D23V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S190. Gene #23: 'amp_12q15' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 23(12Q15) MUTATED | 28 | 4 | 2 | 4 |
AMP PEAK 23(12Q15) WILD-TYPE | 156 | 233 | 62 | 161 |
Figure S190. Get High-res Image Gene #23: 'amp_12q15' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D23V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S191. Gene #23: 'amp_12q15' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 23(12Q15) MUTATED | 34 | 4 | 4 |
AMP PEAK 23(12Q15) WILD-TYPE | 199 | 231 | 188 |
Figure S191. Get High-res Image Gene #23: 'amp_12q15' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D23V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S192. Gene #23: 'amp_12q15' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 23(12Q15) MUTATED | 34 | 1 | 7 |
AMP PEAK 23(12Q15) WILD-TYPE | 169 | 189 | 260 |
Figure S192. Get High-res Image Gene #23: 'amp_12q15' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D23V10.png)
P value = 0.0292 (Fisher's exact test), Q value = 0.052
Table S193. Gene #24: 'amp_13q34' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
AMP PEAK 24(13Q34) MUTATED | 3 | 17 | 5 | 6 |
AMP PEAK 24(13Q34) WILD-TYPE | 153 | 166 | 82 | 114 |
Figure S193. Get High-res Image Gene #24: 'amp_13q34' versus Molecular Subtype #3: 'MIR_CNMF'
![](D24V3.png)
P value = 0.00118 (Fisher's exact test), Q value = 0.003
Table S194. Gene #24: 'amp_13q34' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 24(13Q34) MUTATED | 6 | 19 | 1 | 1 |
AMP PEAK 24(13Q34) WILD-TYPE | 178 | 218 | 63 | 164 |
Figure S194. Get High-res Image Gene #24: 'amp_13q34' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D24V6.png)
P value = 0.027 (Fisher's exact test), Q value = 0.048
Table S195. Gene #24: 'amp_13q34' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 24(13Q34) MUTATED | 13 | 13 | 6 |
AMP PEAK 24(13Q34) WILD-TYPE | 190 | 177 | 261 |
Figure S195. Get High-res Image Gene #24: 'amp_13q34' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D24V10.png)
P value = 0.00034 (Fisher's exact test), Q value = 0.00097
Table S196. Gene #25: 'amp_14q32.33' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 25(14Q32.33) MUTATED | 32 | 10 | 2 |
AMP PEAK 25(14Q32.33) WILD-TYPE | 501 | 532 | 13 |
Figure S196. Get High-res Image Gene #25: 'amp_14q32.33' versus Molecular Subtype #5: 'CN_CNMF'
![](D25V5.png)
P value = 0.0218 (Fisher's exact test), Q value = 0.04
Table S197. Gene #25: 'amp_14q32.33' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 25(14Q32.33) MUTATED | 12 | 4 | 2 |
AMP PEAK 25(14Q32.33) WILD-TYPE | 221 | 231 | 190 |
Figure S197. Get High-res Image Gene #25: 'amp_14q32.33' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D25V9.png)
P value = 0.00925 (Fisher's exact test), Q value = 0.018
Table S198. Gene #25: 'amp_14q32.33' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 25(14Q32.33) MUTATED | 11 | 5 | 2 |
AMP PEAK 25(14Q32.33) WILD-TYPE | 192 | 185 | 265 |
Figure S198. Get High-res Image Gene #25: 'amp_14q32.33' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D25V10.png)
P value = 0.00073 (Fisher's exact test), Q value = 0.002
Table S199. Gene #26: 'amp_17p13.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 26(17P13.2) MUTATED | 9 | 12 | 6 | 20 |
AMP PEAK 26(17P13.2) WILD-TYPE | 138 | 84 | 146 | 93 |
Figure S199. Get High-res Image Gene #26: 'amp_17p13.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D26V1.png)
P value = 0.0138 (Fisher's exact test), Q value = 0.027
Table S200. Gene #26: 'amp_17p13.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 26(17P13.2) MUTATED | 10 | 18 | 5 | 14 |
AMP PEAK 26(17P13.2) WILD-TYPE | 138 | 84 | 95 | 144 |
Figure S200. Get High-res Image Gene #26: 'amp_17p13.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D26V2.png)
P value = 0.0488 (Fisher's exact test), Q value = 0.081
Table S201. Gene #26: 'amp_17p13.2' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
AMP PEAK 26(17P13.2) MUTATED | 6 | 21 | 8 | 13 |
AMP PEAK 26(17P13.2) WILD-TYPE | 150 | 162 | 79 | 107 |
Figure S201. Get High-res Image Gene #26: 'amp_17p13.2' versus Molecular Subtype #3: 'MIR_CNMF'
![](D26V3.png)
P value = 0.00609 (Fisher's exact test), Q value = 0.013
Table S202. Gene #26: 'amp_17p13.2' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 26(17P13.2) MUTATED | 17 | 4 | 18 |
AMP PEAK 26(17P13.2) WILD-TYPE | 207 | 200 | 200 |
Figure S202. Get High-res Image Gene #26: 'amp_17p13.2' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D26V7.png)
P value = 0.033 (Fisher's exact test), Q value = 0.058
Table S203. Gene #26: 'amp_17p13.2' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 26(17P13.2) MUTATED | 4 | 13 | 6 |
AMP PEAK 26(17P13.2) WILD-TYPE | 181 | 148 | 153 |
Figure S203. Get High-res Image Gene #26: 'amp_17p13.2' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D26V13.png)
P value = 0.014 (Fisher's exact test), Q value = 0.027
Table S204. Gene #27: 'amp_17q25.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 27(17Q25.1) MUTATED | 19 | 22 | 13 | 19 |
AMP PEAK 27(17Q25.1) WILD-TYPE | 128 | 74 | 139 | 94 |
Figure S204. Get High-res Image Gene #27: 'amp_17q25.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D27V1.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00032
Table S205. Gene #27: 'amp_17q25.1' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 27(17Q25.1) MUTATED | 82 | 42 | 4 |
AMP PEAK 27(17Q25.1) WILD-TYPE | 451 | 500 | 11 |
Figure S205. Get High-res Image Gene #27: 'amp_17q25.1' versus Molecular Subtype #5: 'CN_CNMF'
![](D27V5.png)
P value = 0.0117 (Fisher's exact test), Q value = 0.023
Table S206. Gene #27: 'amp_17q25.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 27(17Q25.1) MUTATED | 32 | 22 | 10 |
AMP PEAK 27(17Q25.1) WILD-TYPE | 201 | 213 | 182 |
Figure S206. Get High-res Image Gene #27: 'amp_17q25.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D27V9.png)
P value = 0.0346 (Fisher's exact test), Q value = 0.06
Table S207. Gene #27: 'amp_17q25.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 27(17Q25.1) MUTATED | 27 | 20 | 17 |
AMP PEAK 27(17Q25.1) WILD-TYPE | 176 | 170 | 250 |
Figure S207. Get High-res Image Gene #27: 'amp_17q25.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D27V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S208. Gene #28: 'amp_19p13.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 28(19P13.3) MUTATED | 58 | 34 | 96 | 29 |
AMP PEAK 28(19P13.3) WILD-TYPE | 89 | 62 | 56 | 84 |
Figure S208. Get High-res Image Gene #28: 'amp_19p13.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D28V1.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00014
Table S209. Gene #28: 'amp_19p13.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 28(19P13.3) MUTATED | 67 | 31 | 62 | 57 |
AMP PEAK 28(19P13.3) WILD-TYPE | 81 | 71 | 38 | 101 |
Figure S209. Get High-res Image Gene #28: 'amp_19p13.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D28V2.png)
P value = 0.0254 (Fisher's exact test), Q value = 0.046
Table S210. Gene #28: 'amp_19p13.3' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
AMP PEAK 28(19P13.3) MUTATED | 67 | 88 | 25 | 52 |
AMP PEAK 28(19P13.3) WILD-TYPE | 89 | 95 | 62 | 68 |
Figure S210. Get High-res Image Gene #28: 'amp_19p13.3' versus Molecular Subtype #3: 'MIR_CNMF'
![](D28V3.png)
P value = 0.00245 (Fisher's exact test), Q value = 0.0058
Table S211. Gene #28: 'amp_19p13.3' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 28(19P13.3) MUTATED | 108 | 53 | 71 |
AMP PEAK 28(19P13.3) WILD-TYPE | 185 | 71 | 58 |
Figure S211. Get High-res Image Gene #28: 'amp_19p13.3' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D28V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S212. Gene #28: 'amp_19p13.3' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 28(19P13.3) MUTATED | 252 | 117 | 6 |
AMP PEAK 28(19P13.3) WILD-TYPE | 281 | 425 | 9 |
Figure S212. Get High-res Image Gene #28: 'amp_19p13.3' versus Molecular Subtype #5: 'CN_CNMF'
![](D28V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S213. Gene #28: 'amp_19p13.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 28(19P13.3) MUTATED | 76 | 21 | 6 | 80 |
AMP PEAK 28(19P13.3) WILD-TYPE | 108 | 216 | 58 | 85 |
Figure S213. Get High-res Image Gene #28: 'amp_19p13.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D28V6.png)
P value = 0.0265 (Fisher's exact test), Q value = 0.047
Table S214. Gene #28: 'amp_19p13.3' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
AMP PEAK 28(19P13.3) MUTATED | 69 | 91 | 37 |
AMP PEAK 28(19P13.3) WILD-TYPE | 165 | 163 | 121 |
Figure S214. Get High-res Image Gene #28: 'amp_19p13.3' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D28V8.png)
P value = 0.00179 (Fisher's exact test), Q value = 0.0044
Table S215. Gene #28: 'amp_19p13.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 28(19P13.3) MUTATED | 82 | 48 | 55 |
AMP PEAK 28(19P13.3) WILD-TYPE | 151 | 187 | 137 |
Figure S215. Get High-res Image Gene #28: 'amp_19p13.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D28V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S216. Gene #28: 'amp_19p13.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 28(19P13.3) MUTATED | 77 | 19 | 89 |
AMP PEAK 28(19P13.3) WILD-TYPE | 126 | 171 | 178 |
Figure S216. Get High-res Image Gene #28: 'amp_19p13.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D28V10.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.00035
Table S217. Gene #28: 'amp_19p13.3' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 28(19P13.3) MUTATED | 24 | 23 | 45 | 37 |
AMP PEAK 28(19P13.3) WILD-TYPE | 113 | 84 | 138 | 45 |
Figure S217. Get High-res Image Gene #28: 'amp_19p13.3' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D28V11.png)
P value = 0.0449 (Fisher's exact test), Q value = 0.075
Table S218. Gene #28: 'amp_19p13.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 28(19P13.3) MUTATED | 37 | 51 | 41 |
AMP PEAK 28(19P13.3) WILD-TYPE | 148 | 110 | 118 |
Figure S218. Get High-res Image Gene #28: 'amp_19p13.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D28V13.png)
P value = 0.00078 (Fisher's exact test), Q value = 0.0021
Table S219. Gene #28: 'amp_19p13.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 28(19P13.3) MUTATED | 10 | 46 | 47 | 26 |
AMP PEAK 28(19P13.3) WILD-TYPE | 81 | 91 | 141 | 63 |
Figure S219. Get High-res Image Gene #28: 'amp_19p13.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D28V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S220. Gene #29: 'amp_19p13.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 29(19P13.2) MUTATED | 57 | 38 | 101 | 25 |
AMP PEAK 29(19P13.2) WILD-TYPE | 90 | 58 | 51 | 88 |
Figure S220. Get High-res Image Gene #29: 'amp_19p13.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D29V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S221. Gene #29: 'amp_19p13.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 29(19P13.2) MUTATED | 66 | 32 | 66 | 57 |
AMP PEAK 29(19P13.2) WILD-TYPE | 82 | 70 | 34 | 101 |
Figure S221. Get High-res Image Gene #29: 'amp_19p13.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D29V2.png)
P value = 0.00135 (Fisher's exact test), Q value = 0.0034
Table S222. Gene #29: 'amp_19p13.2' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 29(19P13.2) MUTATED | 109 | 54 | 73 |
AMP PEAK 29(19P13.2) WILD-TYPE | 184 | 70 | 56 |
Figure S222. Get High-res Image Gene #29: 'amp_19p13.2' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D29V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S223. Gene #29: 'amp_19p13.2' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 29(19P13.2) MUTATED | 261 | 104 | 6 |
AMP PEAK 29(19P13.2) WILD-TYPE | 272 | 438 | 9 |
Figure S223. Get High-res Image Gene #29: 'amp_19p13.2' versus Molecular Subtype #5: 'CN_CNMF'
![](D29V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S224. Gene #29: 'amp_19p13.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 29(19P13.2) MUTATED | 79 | 13 | 6 | 77 |
AMP PEAK 29(19P13.2) WILD-TYPE | 105 | 224 | 58 | 88 |
Figure S224. Get High-res Image Gene #29: 'amp_19p13.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D29V6.png)
P value = 0.0177 (Fisher's exact test), Q value = 0.033
Table S225. Gene #29: 'amp_19p13.2' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 29(19P13.2) MUTATED | 67 | 48 | 79 |
AMP PEAK 29(19P13.2) WILD-TYPE | 157 | 156 | 139 |
Figure S225. Get High-res Image Gene #29: 'amp_19p13.2' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D29V7.png)
P value = 0.00655 (Fisher's exact test), Q value = 0.014
Table S226. Gene #29: 'amp_19p13.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
AMP PEAK 29(19P13.2) MUTATED | 71 | 90 | 33 |
AMP PEAK 29(19P13.2) WILD-TYPE | 163 | 164 | 125 |
Figure S226. Get High-res Image Gene #29: 'amp_19p13.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D29V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S227. Gene #29: 'amp_19p13.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 29(19P13.2) MUTATED | 88 | 43 | 48 |
AMP PEAK 29(19P13.2) WILD-TYPE | 145 | 192 | 144 |
Figure S227. Get High-res Image Gene #29: 'amp_19p13.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D29V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S228. Gene #29: 'amp_19p13.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 29(19P13.2) MUTATED | 83 | 15 | 81 |
AMP PEAK 29(19P13.2) WILD-TYPE | 120 | 175 | 186 |
Figure S228. Get High-res Image Gene #29: 'amp_19p13.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D29V10.png)
P value = 0.00024 (Fisher's exact test), Q value = 0.00069
Table S229. Gene #29: 'amp_19p13.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 29(19P13.2) MUTATED | 26 | 21 | 39 | 36 |
AMP PEAK 29(19P13.2) WILD-TYPE | 111 | 86 | 144 | 46 |
Figure S229. Get High-res Image Gene #29: 'amp_19p13.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D29V11.png)
P value = 0.0407 (Fisher's exact test), Q value = 0.07
Table S230. Gene #29: 'amp_19p13.2' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 29(19P13.2) MUTATED | 36 | 50 | 36 |
AMP PEAK 29(19P13.2) WILD-TYPE | 149 | 111 | 123 |
Figure S230. Get High-res Image Gene #29: 'amp_19p13.2' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D29V13.png)
P value = 0.00056 (Fisher's exact test), Q value = 0.0015
Table S231. Gene #29: 'amp_19p13.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 29(19P13.2) MUTATED | 9 | 41 | 43 | 29 |
AMP PEAK 29(19P13.2) WILD-TYPE | 82 | 96 | 145 | 60 |
Figure S231. Get High-res Image Gene #29: 'amp_19p13.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D29V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S232. Gene #30: 'amp_19q12' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 30(19Q12) MUTATED | 55 | 31 | 85 | 17 |
AMP PEAK 30(19Q12) WILD-TYPE | 92 | 65 | 67 | 96 |
Figure S232. Get High-res Image Gene #30: 'amp_19q12' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D30V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S233. Gene #30: 'amp_19q12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 30(19Q12) MUTATED | 62 | 21 | 54 | 51 |
AMP PEAK 30(19Q12) WILD-TYPE | 86 | 81 | 46 | 107 |
Figure S233. Get High-res Image Gene #30: 'amp_19q12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D30V2.png)
P value = 0.00465 (Fisher's exact test), Q value = 0.01
Table S234. Gene #30: 'amp_19q12' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 30(19Q12) MUTATED | 91 | 49 | 61 |
AMP PEAK 30(19Q12) WILD-TYPE | 202 | 75 | 68 |
Figure S234. Get High-res Image Gene #30: 'amp_19q12' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D30V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S235. Gene #30: 'amp_19q12' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 30(19Q12) MUTATED | 221 | 20 | 6 |
AMP PEAK 30(19Q12) WILD-TYPE | 312 | 522 | 9 |
Figure S235. Get High-res Image Gene #30: 'amp_19q12' versus Molecular Subtype #5: 'CN_CNMF'
![](D30V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S236. Gene #30: 'amp_19q12' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 30(19Q12) MUTATED | 62 | 8 | 6 | 0 |
AMP PEAK 30(19Q12) WILD-TYPE | 122 | 229 | 58 | 165 |
Figure S236. Get High-res Image Gene #30: 'amp_19q12' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D30V6.png)
P value = 0.0235 (Fisher's exact test), Q value = 0.043
Table S237. Gene #30: 'amp_19q12' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 30(19Q12) MUTATED | 39 | 22 | 44 |
AMP PEAK 30(19Q12) WILD-TYPE | 185 | 182 | 174 |
Figure S237. Get High-res Image Gene #30: 'amp_19q12' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D30V7.png)
P value = 0.00083 (Fisher's exact test), Q value = 0.0022
Table S238. Gene #30: 'amp_19q12' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
AMP PEAK 30(19Q12) MUTATED | 40 | 53 | 12 |
AMP PEAK 30(19Q12) WILD-TYPE | 194 | 201 | 146 |
Figure S238. Get High-res Image Gene #30: 'amp_19q12' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D30V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S239. Gene #30: 'amp_19q12' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 30(19Q12) MUTATED | 73 | 3 | 5 |
AMP PEAK 30(19Q12) WILD-TYPE | 160 | 232 | 187 |
Figure S239. Get High-res Image Gene #30: 'amp_19q12' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D30V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S240. Gene #30: 'amp_19q12' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 30(19Q12) MUTATED | 69 | 7 | 5 |
AMP PEAK 30(19Q12) WILD-TYPE | 134 | 183 | 262 |
Figure S240. Get High-res Image Gene #30: 'amp_19q12' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D30V10.png)
P value = 0.00018 (Fisher's exact test), Q value = 0.00053
Table S241. Gene #30: 'amp_19q12' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 30(19Q12) MUTATED | 10 | 15 | 6 | 0 |
AMP PEAK 30(19Q12) WILD-TYPE | 127 | 92 | 177 | 82 |
Figure S241. Get High-res Image Gene #30: 'amp_19q12' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D30V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S242. Gene #30: 'amp_19q12' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 30(19Q12) MUTATED | 6 | 2 | 23 |
AMP PEAK 30(19Q12) WILD-TYPE | 216 | 182 | 80 |
Figure S242. Get High-res Image Gene #30: 'amp_19q12' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D30V12.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S243. Gene #30: 'amp_19q12' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 30(19Q12) MUTATED | 23 | 3 | 5 |
AMP PEAK 30(19Q12) WILD-TYPE | 162 | 158 | 154 |
Figure S243. Get High-res Image Gene #30: 'amp_19q12' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D30V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S244. Gene #30: 'amp_19q12' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 30(19Q12) MUTATED | 3 | 3 | 2 | 23 |
AMP PEAK 30(19Q12) WILD-TYPE | 88 | 134 | 186 | 66 |
Figure S244. Get High-res Image Gene #30: 'amp_19q12' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D30V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S245. Gene #31: 'amp_19q13.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 31(19Q13.2) MUTATED | 52 | 27 | 78 | 14 |
AMP PEAK 31(19Q13.2) WILD-TYPE | 95 | 69 | 74 | 99 |
Figure S245. Get High-res Image Gene #31: 'amp_19q13.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D31V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S246. Gene #31: 'amp_19q13.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 31(19Q13.2) MUTATED | 62 | 18 | 49 | 42 |
AMP PEAK 31(19Q13.2) WILD-TYPE | 86 | 84 | 51 | 116 |
Figure S246. Get High-res Image Gene #31: 'amp_19q13.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D31V2.png)
P value = 0.0068 (Fisher's exact test), Q value = 0.014
Table S247. Gene #31: 'amp_19q13.2' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 31(19Q13.2) MUTATED | 83 | 47 | 56 |
AMP PEAK 31(19Q13.2) WILD-TYPE | 210 | 77 | 73 |
Figure S247. Get High-res Image Gene #31: 'amp_19q13.2' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D31V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S248. Gene #31: 'amp_19q13.2' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 31(19Q13.2) MUTATED | 207 | 17 | 7 |
AMP PEAK 31(19Q13.2) WILD-TYPE | 326 | 525 | 8 |
Figure S248. Get High-res Image Gene #31: 'amp_19q13.2' versus Molecular Subtype #5: 'CN_CNMF'
![](D31V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S249. Gene #31: 'amp_19q13.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 31(19Q13.2) MUTATED | 63 | 5 | 7 | 0 |
AMP PEAK 31(19Q13.2) WILD-TYPE | 121 | 232 | 57 | 165 |
Figure S249. Get High-res Image Gene #31: 'amp_19q13.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D31V6.png)
P value = 0.00464 (Fisher's exact test), Q value = 0.01
Table S250. Gene #31: 'amp_19q13.2' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
AMP PEAK 31(19Q13.2) MUTATED | 34 | 16 | 40 |
AMP PEAK 31(19Q13.2) WILD-TYPE | 190 | 188 | 178 |
Figure S250. Get High-res Image Gene #31: 'amp_19q13.2' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D31V7.png)
P value = 0.00118 (Fisher's exact test), Q value = 0.003
Table S251. Gene #31: 'amp_19q13.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
AMP PEAK 31(19Q13.2) MUTATED | 32 | 48 | 10 |
AMP PEAK 31(19Q13.2) WILD-TYPE | 202 | 206 | 148 |
Figure S251. Get High-res Image Gene #31: 'amp_19q13.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D31V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S252. Gene #31: 'amp_19q13.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 31(19Q13.2) MUTATED | 67 | 3 | 5 |
AMP PEAK 31(19Q13.2) WILD-TYPE | 166 | 232 | 187 |
Figure S252. Get High-res Image Gene #31: 'amp_19q13.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D31V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S253. Gene #31: 'amp_19q13.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 31(19Q13.2) MUTATED | 63 | 7 | 5 |
AMP PEAK 31(19Q13.2) WILD-TYPE | 140 | 183 | 262 |
Figure S253. Get High-res Image Gene #31: 'amp_19q13.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D31V10.png)
P value = 0.00016 (Fisher's exact test), Q value = 0.00048
Table S254. Gene #31: 'amp_19q13.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 31(19Q13.2) MUTATED | 13 | 13 | 5 | 0 |
AMP PEAK 31(19Q13.2) WILD-TYPE | 124 | 94 | 178 | 82 |
Figure S254. Get High-res Image Gene #31: 'amp_19q13.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D31V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S255. Gene #31: 'amp_19q13.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
AMP PEAK 31(19Q13.2) MUTATED | 7 | 1 | 23 |
AMP PEAK 31(19Q13.2) WILD-TYPE | 215 | 183 | 80 |
Figure S255. Get High-res Image Gene #31: 'amp_19q13.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D31V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S256. Gene #31: 'amp_19q13.2' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
AMP PEAK 31(19Q13.2) MUTATED | 25 | 2 | 4 |
AMP PEAK 31(19Q13.2) WILD-TYPE | 160 | 159 | 155 |
Figure S256. Get High-res Image Gene #31: 'amp_19q13.2' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D31V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S257. Gene #31: 'amp_19q13.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 31(19Q13.2) MUTATED | 5 | 1 | 1 | 24 |
AMP PEAK 31(19Q13.2) WILD-TYPE | 86 | 136 | 187 | 65 |
Figure S257. Get High-res Image Gene #31: 'amp_19q13.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D31V14.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00017
Table S258. Gene #32: 'amp_xp11.21' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
AMP PEAK 32(XP11.21) MUTATED | 29 | 74 | 1 |
AMP PEAK 32(XP11.21) WILD-TYPE | 504 | 468 | 14 |
Figure S258. Get High-res Image Gene #32: 'amp_xp11.21' versus Molecular Subtype #5: 'CN_CNMF'
![](D32V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S259. Gene #32: 'amp_xp11.21' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
AMP PEAK 32(XP11.21) MUTATED | 7 | 63 | 5 | 1 |
AMP PEAK 32(XP11.21) WILD-TYPE | 177 | 174 | 59 | 164 |
Figure S259. Get High-res Image Gene #32: 'amp_xp11.21' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D32V6.png)
P value = 0.00306 (Fisher's exact test), Q value = 0.007
Table S260. Gene #32: 'amp_xp11.21' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
AMP PEAK 32(XP11.21) MUTATED | 18 | 41 | 18 |
AMP PEAK 32(XP11.21) WILD-TYPE | 215 | 194 | 174 |
Figure S260. Get High-res Image Gene #32: 'amp_xp11.21' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D32V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S261. Gene #32: 'amp_xp11.21' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
AMP PEAK 32(XP11.21) MUTATED | 9 | 49 | 19 |
AMP PEAK 32(XP11.21) WILD-TYPE | 194 | 141 | 248 |
Figure S261. Get High-res Image Gene #32: 'amp_xp11.21' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D32V10.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00026
Table S262. Gene #32: 'amp_xp11.21' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
AMP PEAK 32(XP11.21) MUTATED | 26 | 21 | 21 | 1 |
AMP PEAK 32(XP11.21) WILD-TYPE | 111 | 86 | 162 | 81 |
Figure S262. Get High-res Image Gene #32: 'amp_xp11.21' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D32V11.png)
P value = 0.0035 (Fisher's exact test), Q value = 0.0079
Table S263. Gene #32: 'amp_xp11.21' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
AMP PEAK 32(XP11.21) MUTATED | 24 | 14 | 22 | 9 |
AMP PEAK 32(XP11.21) WILD-TYPE | 67 | 123 | 166 | 80 |
Figure S263. Get High-res Image Gene #32: 'amp_xp11.21' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D32V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S264. Gene #33: 'del_1p36.32' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 1(1P36.32) MUTATED | 114 | 204 | 0 |
DEL PEAK 1(1P36.32) WILD-TYPE | 419 | 338 | 15 |
Figure S264. Get High-res Image Gene #33: 'del_1p36.32' versus Molecular Subtype #5: 'CN_CNMF'
![](D33V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S265. Gene #33: 'del_1p36.32' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 1(1P36.32) MUTATED | 39 | 11 | 17 | 164 |
DEL PEAK 1(1P36.32) WILD-TYPE | 145 | 226 | 47 | 1 |
Figure S265. Get High-res Image Gene #33: 'del_1p36.32' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D33V6.png)
P value = 0.0103 (Fisher's exact test), Q value = 0.02
Table S266. Gene #33: 'del_1p36.32' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 1(1P36.32) MUTATED | 65 | 86 | 68 |
DEL PEAK 1(1P36.32) WILD-TYPE | 159 | 118 | 150 |
Figure S266. Get High-res Image Gene #33: 'del_1p36.32' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D33V7.png)
P value = 0.00051 (Fisher's exact test), Q value = 0.0014
Table S267. Gene #33: 'del_1p36.32' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 1(1P36.32) MUTATED | 69 | 76 | 74 |
DEL PEAK 1(1P36.32) WILD-TYPE | 165 | 178 | 84 |
Figure S267. Get High-res Image Gene #33: 'del_1p36.32' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D33V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S268. Gene #33: 'del_1p36.32' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 1(1P36.32) MUTATED | 38 | 84 | 106 |
DEL PEAK 1(1P36.32) WILD-TYPE | 195 | 151 | 86 |
Figure S268. Get High-res Image Gene #33: 'del_1p36.32' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D33V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S269. Gene #33: 'del_1p36.32' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 1(1P36.32) MUTATED | 34 | 16 | 178 |
DEL PEAK 1(1P36.32) WILD-TYPE | 169 | 174 | 89 |
Figure S269. Get High-res Image Gene #33: 'del_1p36.32' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D33V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S270. Gene #33: 'del_1p36.32' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 1(1P36.32) MUTATED | 33 | 13 | 92 | 68 |
DEL PEAK 1(1P36.32) WILD-TYPE | 104 | 94 | 91 | 14 |
Figure S270. Get High-res Image Gene #33: 'del_1p36.32' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D33V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S271. Gene #33: 'del_1p36.32' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 1(1P36.32) MUTATED | 84 | 101 | 21 |
DEL PEAK 1(1P36.32) WILD-TYPE | 138 | 83 | 82 |
Figure S271. Get High-res Image Gene #33: 'del_1p36.32' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D33V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S272. Gene #33: 'del_1p36.32' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 1(1P36.32) MUTATED | 44 | 83 | 79 |
DEL PEAK 1(1P36.32) WILD-TYPE | 141 | 78 | 80 |
Figure S272. Get High-res Image Gene #33: 'del_1p36.32' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D33V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S273. Gene #33: 'del_1p36.32' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 1(1P36.32) MUTATED | 7 | 83 | 95 | 21 |
DEL PEAK 1(1P36.32) WILD-TYPE | 84 | 54 | 93 | 68 |
Figure S273. Get High-res Image Gene #33: 'del_1p36.32' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D33V14.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00051
Table S274. Gene #34: 'del_1p36.23' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 2(1P36.23) MUTATED | 151 | 197 | 0 |
DEL PEAK 2(1P36.23) WILD-TYPE | 382 | 345 | 15 |
Figure S274. Get High-res Image Gene #34: 'del_1p36.23' versus Molecular Subtype #5: 'CN_CNMF'
![](D34V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S275. Gene #34: 'del_1p36.23' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 2(1P36.23) MUTATED | 52 | 12 | 18 | 164 |
DEL PEAK 2(1P36.23) WILD-TYPE | 132 | 225 | 46 | 1 |
Figure S275. Get High-res Image Gene #34: 'del_1p36.23' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D34V6.png)
P value = 0.011 (Fisher's exact test), Q value = 0.022
Table S276. Gene #34: 'del_1p36.23' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 2(1P36.23) MUTATED | 80 | 86 | 75 |
DEL PEAK 2(1P36.23) WILD-TYPE | 154 | 168 | 83 |
Figure S276. Get High-res Image Gene #34: 'del_1p36.23' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D34V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S277. Gene #34: 'del_1p36.23' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 2(1P36.23) MUTATED | 55 | 85 | 108 |
DEL PEAK 2(1P36.23) WILD-TYPE | 178 | 150 | 84 |
Figure S277. Get High-res Image Gene #34: 'del_1p36.23' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D34V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S278. Gene #34: 'del_1p36.23' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 2(1P36.23) MUTATED | 50 | 17 | 181 |
DEL PEAK 2(1P36.23) WILD-TYPE | 153 | 173 | 86 |
Figure S278. Get High-res Image Gene #34: 'del_1p36.23' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D34V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S279. Gene #34: 'del_1p36.23' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 2(1P36.23) MUTATED | 35 | 15 | 94 | 68 |
DEL PEAK 2(1P36.23) WILD-TYPE | 102 | 92 | 89 | 14 |
Figure S279. Get High-res Image Gene #34: 'del_1p36.23' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D34V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S280. Gene #34: 'del_1p36.23' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 2(1P36.23) MUTATED | 85 | 103 | 24 |
DEL PEAK 2(1P36.23) WILD-TYPE | 137 | 81 | 79 |
Figure S280. Get High-res Image Gene #34: 'del_1p36.23' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D34V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S281. Gene #34: 'del_1p36.23' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 2(1P36.23) MUTATED | 47 | 84 | 81 |
DEL PEAK 2(1P36.23) WILD-TYPE | 138 | 77 | 78 |
Figure S281. Get High-res Image Gene #34: 'del_1p36.23' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D34V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S282. Gene #34: 'del_1p36.23' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 2(1P36.23) MUTATED | 7 | 84 | 97 | 24 |
DEL PEAK 2(1P36.23) WILD-TYPE | 84 | 53 | 91 | 65 |
Figure S282. Get High-res Image Gene #34: 'del_1p36.23' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D34V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S283. Gene #35: 'del_1p32.3' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 3(1P32.3) MUTATED | 66 | 190 | 1 |
DEL PEAK 3(1P32.3) WILD-TYPE | 467 | 352 | 14 |
Figure S283. Get High-res Image Gene #35: 'del_1p32.3' versus Molecular Subtype #5: 'CN_CNMF'
![](D35V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S284. Gene #35: 'del_1p32.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 3(1P32.3) MUTATED | 23 | 5 | 16 | 164 |
DEL PEAK 3(1P32.3) WILD-TYPE | 161 | 232 | 48 | 1 |
Figure S284. Get High-res Image Gene #35: 'del_1p32.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D35V6.png)
P value = 0.00229 (Fisher's exact test), Q value = 0.0054
Table S285. Gene #35: 'del_1p32.3' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 3(1P32.3) MUTATED | 58 | 78 | 52 |
DEL PEAK 3(1P32.3) WILD-TYPE | 166 | 126 | 166 |
Figure S285. Get High-res Image Gene #35: 'del_1p32.3' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D35V7.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S286. Gene #35: 'del_1p32.3' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 3(1P32.3) MUTATED | 59 | 60 | 69 |
DEL PEAK 3(1P32.3) WILD-TYPE | 175 | 194 | 89 |
Figure S286. Get High-res Image Gene #35: 'del_1p32.3' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D35V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S287. Gene #35: 'del_1p32.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 3(1P32.3) MUTATED | 36 | 82 | 101 |
DEL PEAK 3(1P32.3) WILD-TYPE | 197 | 153 | 91 |
Figure S287. Get High-res Image Gene #35: 'del_1p32.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D35V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S288. Gene #35: 'del_1p32.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 3(1P32.3) MUTATED | 33 | 13 | 173 |
DEL PEAK 3(1P32.3) WILD-TYPE | 170 | 177 | 94 |
Figure S288. Get High-res Image Gene #35: 'del_1p32.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D35V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S289. Gene #35: 'del_1p32.3' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 3(1P32.3) MUTATED | 33 | 10 | 86 | 67 |
DEL PEAK 3(1P32.3) WILD-TYPE | 104 | 97 | 97 | 15 |
Figure S289. Get High-res Image Gene #35: 'del_1p32.3' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D35V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S290. Gene #35: 'del_1p32.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 3(1P32.3) MUTATED | 82 | 96 | 18 |
DEL PEAK 3(1P32.3) WILD-TYPE | 140 | 88 | 85 |
Figure S290. Get High-res Image Gene #35: 'del_1p32.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D35V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S291. Gene #35: 'del_1p32.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 3(1P32.3) MUTATED | 39 | 82 | 75 |
DEL PEAK 3(1P32.3) WILD-TYPE | 146 | 79 | 84 |
Figure S291. Get High-res Image Gene #35: 'del_1p32.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D35V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S292. Gene #35: 'del_1p32.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 3(1P32.3) MUTATED | 7 | 82 | 90 | 17 |
DEL PEAK 3(1P32.3) WILD-TYPE | 84 | 55 | 98 | 72 |
Figure S292. Get High-res Image Gene #35: 'del_1p32.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D35V14.png)
P value = 0.0049 (Fisher's exact test), Q value = 0.011
Table S293. Gene #36: 'del_1p22.1' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 4(1P22.1) MUTATED | 25 | 3 | 17 |
DEL PEAK 4(1P22.1) WILD-TYPE | 268 | 121 | 112 |
Figure S293. Get High-res Image Gene #36: 'del_1p22.1' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D36V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S294. Gene #36: 'del_1p22.1' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 4(1P22.1) MUTATED | 46 | 188 | 0 |
DEL PEAK 4(1P22.1) WILD-TYPE | 487 | 354 | 15 |
Figure S294. Get High-res Image Gene #36: 'del_1p22.1' versus Molecular Subtype #5: 'CN_CNMF'
![](D36V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S295. Gene #36: 'del_1p22.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 4(1P22.1) MUTATED | 12 | 6 | 14 | 164 |
DEL PEAK 4(1P22.1) WILD-TYPE | 172 | 231 | 50 | 1 |
Figure S295. Get High-res Image Gene #36: 'del_1p22.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D36V6.png)
P value = 0.0222 (Fisher's exact test), Q value = 0.04
Table S296. Gene #36: 'del_1p22.1' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 4(1P22.1) MUTATED | 59 | 71 | 50 |
DEL PEAK 4(1P22.1) WILD-TYPE | 165 | 133 | 168 |
Figure S296. Get High-res Image Gene #36: 'del_1p22.1' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D36V7.png)
P value = 6e-05 (Fisher's exact test), Q value = 2e-04
Table S297. Gene #36: 'del_1p22.1' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 4(1P22.1) MUTATED | 56 | 58 | 66 |
DEL PEAK 4(1P22.1) WILD-TYPE | 178 | 196 | 92 |
Figure S297. Get High-res Image Gene #36: 'del_1p22.1' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D36V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S298. Gene #36: 'del_1p22.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 4(1P22.1) MUTATED | 15 | 81 | 100 |
DEL PEAK 4(1P22.1) WILD-TYPE | 218 | 154 | 92 |
Figure S298. Get High-res Image Gene #36: 'del_1p22.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D36V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S299. Gene #36: 'del_1p22.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 4(1P22.1) MUTATED | 11 | 11 | 174 |
DEL PEAK 4(1P22.1) WILD-TYPE | 192 | 179 | 93 |
Figure S299. Get High-res Image Gene #36: 'del_1p22.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D36V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S300. Gene #36: 'del_1p22.1' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 4(1P22.1) MUTATED | 25 | 9 | 85 | 67 |
DEL PEAK 4(1P22.1) WILD-TYPE | 112 | 98 | 98 | 15 |
Figure S300. Get High-res Image Gene #36: 'del_1p22.1' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D36V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S301. Gene #36: 'del_1p22.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 4(1P22.1) MUTATED | 81 | 98 | 7 |
DEL PEAK 4(1P22.1) WILD-TYPE | 141 | 86 | 96 |
Figure S301. Get High-res Image Gene #36: 'del_1p22.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D36V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S302. Gene #36: 'del_1p22.1' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 4(1P22.1) MUTATED | 30 | 83 | 73 |
DEL PEAK 4(1P22.1) WILD-TYPE | 155 | 78 | 86 |
Figure S302. Get High-res Image Gene #36: 'del_1p22.1' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D36V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S303. Gene #36: 'del_1p22.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 4(1P22.1) MUTATED | 7 | 82 | 90 | 7 |
DEL PEAK 4(1P22.1) WILD-TYPE | 84 | 55 | 98 | 82 |
Figure S303. Get High-res Image Gene #36: 'del_1p22.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D36V14.png)
P value = 0.00958 (Fisher's exact test), Q value = 0.019
Table S304. Gene #37: 'del_1q42.11' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 5(1Q42.11) MUTATED | 52 | 27 | 1 |
DEL PEAK 5(1Q42.11) WILD-TYPE | 481 | 515 | 14 |
Figure S304. Get High-res Image Gene #37: 'del_1q42.11' versus Molecular Subtype #5: 'CN_CNMF'
![](D37V5.png)
P value = 0.00018 (Fisher's exact test), Q value = 0.00053
Table S305. Gene #37: 'del_1q42.11' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 5(1Q42.11) MUTATED | 18 | 18 | 8 | 1 |
DEL PEAK 5(1Q42.11) WILD-TYPE | 166 | 219 | 56 | 164 |
Figure S305. Get High-res Image Gene #37: 'del_1q42.11' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D37V6.png)
P value = 0.0292 (Fisher's exact test), Q value = 0.052
Table S306. Gene #37: 'del_1q42.11' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 5(1Q42.11) MUTATED | 15 | 17 | 9 |
DEL PEAK 5(1Q42.11) WILD-TYPE | 188 | 173 | 258 |
Figure S306. Get High-res Image Gene #37: 'del_1q42.11' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D37V10.png)
P value = 0.0125 (Fisher's exact test), Q value = 0.024
Table S307. Gene #37: 'del_1q42.11' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 5(1Q42.11) MUTATED | 6 | 13 | 9 | 1 |
DEL PEAK 5(1Q42.11) WILD-TYPE | 131 | 94 | 174 | 81 |
Figure S307. Get High-res Image Gene #37: 'del_1q42.11' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D37V11.png)
P value = 0.0281 (Fisher's exact test), Q value = 0.05
Table S308. Gene #37: 'del_1q42.11' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 5(1Q42.11) MUTATED | 7 | 7 | 5 | 10 |
DEL PEAK 5(1Q42.11) WILD-TYPE | 84 | 130 | 183 | 79 |
Figure S308. Get High-res Image Gene #37: 'del_1q42.11' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D37V14.png)
P value = 0.00015 (Fisher's exact test), Q value = 0.00046
Table S309. Gene #38: 'del_1q44' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 6(1Q44) MUTATED | 11 | 28 | 7 | 2 |
DEL PEAK 6(1Q44) WILD-TYPE | 173 | 209 | 57 | 163 |
Figure S309. Get High-res Image Gene #38: 'del_1q44' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D38V6.png)
P value = 0.0269 (Fisher's exact test), Q value = 0.048
Table S310. Gene #38: 'del_1q44' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 6(1Q44) MUTATED | 27 | 13 | 10 |
DEL PEAK 6(1Q44) WILD-TYPE | 207 | 241 | 148 |
Figure S310. Get High-res Image Gene #38: 'del_1q44' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D38V8.png)
P value = 0.00454 (Fisher's exact test), Q value = 0.01
Table S311. Gene #38: 'del_1q44' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 6(1Q44) MUTATED | 12 | 23 | 11 |
DEL PEAK 6(1Q44) WILD-TYPE | 191 | 167 | 256 |
Figure S311. Get High-res Image Gene #38: 'del_1q44' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D38V10.png)
P value = 0.048 (Fisher's exact test), Q value = 0.08
Table S312. Gene #38: 'del_1q44' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 6(1Q44) MUTATED | 9 | 14 | 9 | 3 |
DEL PEAK 6(1Q44) WILD-TYPE | 128 | 93 | 174 | 79 |
Figure S312. Get High-res Image Gene #38: 'del_1q44' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D38V11.png)
P value = 0.00542 (Fisher's exact test), Q value = 0.012
Table S313. Gene #39: 'del_2q22.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 7(2Q22.1) MUTATED | 9 | 17 | 8 | 7 |
DEL PEAK 7(2Q22.1) WILD-TYPE | 138 | 79 | 144 | 106 |
Figure S313. Get High-res Image Gene #39: 'del_2q22.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D39V1.png)
P value = 0.029 (Fisher's exact test), Q value = 0.051
Table S314. Gene #39: 'del_2q22.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 7(2Q22.1) MUTATED | 9 | 16 | 5 | 11 |
DEL PEAK 7(2Q22.1) WILD-TYPE | 139 | 86 | 95 | 147 |
Figure S314. Get High-res Image Gene #39: 'del_2q22.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D39V2.png)
P value = 0.0386 (Fisher's exact test), Q value = 0.066
Table S315. Gene #39: 'del_2q22.1' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 7(2Q22.1) MUTATED | 41 | 25 | 2 |
DEL PEAK 7(2Q22.1) WILD-TYPE | 492 | 517 | 13 |
Figure S315. Get High-res Image Gene #39: 'del_2q22.1' versus Molecular Subtype #5: 'CN_CNMF'
![](D39V5.png)
P value = 0.0458 (Fisher's exact test), Q value = 0.076
Table S316. Gene #39: 'del_2q22.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 7(2Q22.1) MUTATED | 15 | 15 | 3 | 3 |
DEL PEAK 7(2Q22.1) WILD-TYPE | 169 | 222 | 61 | 162 |
Figure S316. Get High-res Image Gene #39: 'del_2q22.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D39V6.png)
P value = 0.00587 (Fisher's exact test), Q value = 0.012
Table S317. Gene #40: 'del_2q37.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 8(2Q37.1) MUTATED | 10 | 20 | 7 | 12 |
DEL PEAK 8(2Q37.1) WILD-TYPE | 138 | 82 | 93 | 146 |
Figure S317. Get High-res Image Gene #40: 'del_2q37.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D40V2.png)
P value = 0.00491 (Fisher's exact test), Q value = 0.011
Table S318. Gene #40: 'del_2q37.1' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 8(2Q37.1) MUTATED | 45 | 72 | 4 |
DEL PEAK 8(2Q37.1) WILD-TYPE | 488 | 470 | 11 |
Figure S318. Get High-res Image Gene #40: 'del_2q37.1' versus Molecular Subtype #5: 'CN_CNMF'
![](D40V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S319. Gene #40: 'del_2q37.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 8(2Q37.1) MUTATED | 17 | 56 | 4 | 4 |
DEL PEAK 8(2Q37.1) WILD-TYPE | 167 | 181 | 60 | 161 |
Figure S319. Get High-res Image Gene #40: 'del_2q37.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D40V6.png)
P value = 0.0119 (Fisher's exact test), Q value = 0.023
Table S320. Gene #40: 'del_2q37.1' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 8(2Q37.1) MUTATED | 25 | 14 | 35 |
DEL PEAK 8(2Q37.1) WILD-TYPE | 199 | 190 | 183 |
Figure S320. Get High-res Image Gene #40: 'del_2q37.1' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D40V7.png)
P value = 0.0058 (Fisher's exact test), Q value = 0.012
Table S321. Gene #40: 'del_2q37.1' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 8(2Q37.1) MUTATED | 35 | 31 | 8 |
DEL PEAK 8(2Q37.1) WILD-TYPE | 199 | 223 | 150 |
Figure S321. Get High-res Image Gene #40: 'del_2q37.1' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D40V8.png)
P value = 0.0239 (Fisher's exact test), Q value = 0.043
Table S322. Gene #40: 'del_2q37.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 8(2Q37.1) MUTATED | 26 | 37 | 14 |
DEL PEAK 8(2Q37.1) WILD-TYPE | 207 | 198 | 178 |
Figure S322. Get High-res Image Gene #40: 'del_2q37.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D40V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S323. Gene #40: 'del_2q37.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 8(2Q37.1) MUTATED | 15 | 46 | 16 |
DEL PEAK 8(2Q37.1) WILD-TYPE | 188 | 144 | 251 |
Figure S323. Get High-res Image Gene #40: 'del_2q37.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D40V10.png)
P value = 0.00118 (Fisher's exact test), Q value = 0.003
Table S324. Gene #40: 'del_2q37.1' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 8(2Q37.1) MUTATED | 25 | 21 | 13 | 6 |
DEL PEAK 8(2Q37.1) WILD-TYPE | 112 | 86 | 170 | 76 |
Figure S324. Get High-res Image Gene #40: 'del_2q37.1' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D40V11.png)
P value = 0.022 (Fisher's exact test), Q value = 0.04
Table S325. Gene #40: 'del_2q37.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 8(2Q37.1) MUTATED | 33 | 14 | 18 |
DEL PEAK 8(2Q37.1) WILD-TYPE | 189 | 170 | 85 |
Figure S325. Get High-res Image Gene #40: 'del_2q37.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D40V12.png)
P value = 0.00107 (Fisher's exact test), Q value = 0.0028
Table S326. Gene #40: 'del_2q37.1' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 8(2Q37.1) MUTATED | 37 | 14 | 13 |
DEL PEAK 8(2Q37.1) WILD-TYPE | 148 | 147 | 146 |
Figure S326. Get High-res Image Gene #40: 'del_2q37.1' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D40V13.png)
P value = 0.00095 (Fisher's exact test), Q value = 0.0025
Table S327. Gene #41: 'del_3p21.31' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 9(3P21.31) MUTATED | 15 | 36 | 6 | 6 |
DEL PEAK 9(3P21.31) WILD-TYPE | 169 | 201 | 58 | 159 |
Figure S327. Get High-res Image Gene #41: 'del_3p21.31' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D41V6.png)
P value = 0.00093 (Fisher's exact test), Q value = 0.0024
Table S328. Gene #41: 'del_3p21.31' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 9(3P21.31) MUTATED | 18 | 12 | 36 |
DEL PEAK 9(3P21.31) WILD-TYPE | 206 | 192 | 182 |
Figure S328. Get High-res Image Gene #41: 'del_3p21.31' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D41V7.png)
P value = 0.0379 (Fisher's exact test), Q value = 0.065
Table S329. Gene #41: 'del_3p21.31' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 9(3P21.31) MUTATED | 33 | 23 | 10 |
DEL PEAK 9(3P21.31) WILD-TYPE | 201 | 231 | 148 |
Figure S329. Get High-res Image Gene #41: 'del_3p21.31' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D41V8.png)
P value = 0.0251 (Fisher's exact test), Q value = 0.045
Table S330. Gene #41: 'del_3p21.31' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 9(3P21.31) MUTATED | 23 | 26 | 17 |
DEL PEAK 9(3P21.31) WILD-TYPE | 180 | 164 | 250 |
Figure S330. Get High-res Image Gene #41: 'del_3p21.31' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D41V10.png)
P value = 0.00134 (Fisher's exact test), Q value = 0.0034
Table S331. Gene #41: 'del_3p21.31' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 9(3P21.31) MUTATED | 13 | 21 | 9 | 8 |
DEL PEAK 9(3P21.31) WILD-TYPE | 124 | 86 | 174 | 74 |
Figure S331. Get High-res Image Gene #41: 'del_3p21.31' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D41V11.png)
P value = 0.00249 (Fisher's exact test), Q value = 0.0058
Table S332. Gene #41: 'del_3p21.31' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 9(3P21.31) MUTATED | 24 | 9 | 18 |
DEL PEAK 9(3P21.31) WILD-TYPE | 198 | 175 | 85 |
Figure S332. Get High-res Image Gene #41: 'del_3p21.31' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D41V12.png)
P value = 0.00295 (Fisher's exact test), Q value = 0.0068
Table S333. Gene #42: 'del_3q13.31' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 10(3Q13.31) MUTATED | 12 | 28 | 6 | 4 |
DEL PEAK 10(3Q13.31) WILD-TYPE | 172 | 209 | 58 | 161 |
Figure S333. Get High-res Image Gene #42: 'del_3q13.31' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D42V6.png)
P value = 0.0198 (Fisher's exact test), Q value = 0.037
Table S334. Gene #42: 'del_3q13.31' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 10(3Q13.31) MUTATED | 31 | 16 | 11 |
DEL PEAK 10(3Q13.31) WILD-TYPE | 203 | 238 | 147 |
Figure S334. Get High-res Image Gene #42: 'del_3q13.31' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D42V8.png)
P value = 0.0462 (Fisher's exact test), Q value = 0.077
Table S335. Gene #42: 'del_3q13.31' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 10(3Q13.31) MUTATED | 15 | 21 | 13 |
DEL PEAK 10(3Q13.31) WILD-TYPE | 188 | 169 | 254 |
Figure S335. Get High-res Image Gene #42: 'del_3q13.31' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D42V10.png)
P value = 0.00055 (Fisher's exact test), Q value = 0.0015
Table S336. Gene #42: 'del_3q13.31' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 10(3Q13.31) MUTATED | 16 | 6 | 17 |
DEL PEAK 10(3Q13.31) WILD-TYPE | 206 | 178 | 86 |
Figure S336. Get High-res Image Gene #42: 'del_3q13.31' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D42V12.png)
P value = 0.00239 (Fisher's exact test), Q value = 0.0057
Table S337. Gene #43: 'del_3q29' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 11(3Q29) MUTATED | 17 | 32 | 6 | 5 |
DEL PEAK 11(3Q29) WILD-TYPE | 167 | 205 | 58 | 160 |
Figure S337. Get High-res Image Gene #43: 'del_3q29' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D43V6.png)
P value = 0.00503 (Fisher's exact test), Q value = 0.011
Table S338. Gene #43: 'del_3q29' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 11(3Q29) MUTATED | 25 | 26 | 15 |
DEL PEAK 11(3Q29) WILD-TYPE | 178 | 164 | 252 |
Figure S338. Get High-res Image Gene #43: 'del_3q29' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D43V10.png)
P value = 0.0424 (Fisher's exact test), Q value = 0.072
Table S339. Gene #43: 'del_3q29' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 11(3Q29) MUTATED | 18 | 12 | 16 |
DEL PEAK 11(3Q29) WILD-TYPE | 204 | 172 | 87 |
Figure S339. Get High-res Image Gene #43: 'del_3q29' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D43V12.png)
P value = 0.00523 (Fisher's exact test), Q value = 0.011
Table S340. Gene #44: 'del_4q34.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 12(4Q34.3) MUTATED | 16 | 25 | 18 | 22 |
DEL PEAK 12(4Q34.3) WILD-TYPE | 131 | 71 | 134 | 91 |
Figure S340. Get High-res Image Gene #44: 'del_4q34.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D44V1.png)
P value = 0.00029 (Fisher's exact test), Q value = 0.00084
Table S341. Gene #44: 'del_4q34.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 12(4Q34.3) MUTATED | 17 | 31 | 10 | 23 |
DEL PEAK 12(4Q34.3) WILD-TYPE | 131 | 71 | 90 | 135 |
Figure S341. Get High-res Image Gene #44: 'del_4q34.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D44V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S342. Gene #44: 'del_4q34.3' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 12(4Q34.3) MUTATED | 77 | 151 | 3 |
DEL PEAK 12(4Q34.3) WILD-TYPE | 456 | 391 | 12 |
Figure S342. Get High-res Image Gene #44: 'del_4q34.3' versus Molecular Subtype #5: 'CN_CNMF'
![](D44V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S343. Gene #44: 'del_4q34.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 12(4Q34.3) MUTATED | 25 | 80 | 6 | 51 |
DEL PEAK 12(4Q34.3) WILD-TYPE | 159 | 157 | 58 | 114 |
Figure S343. Get High-res Image Gene #44: 'del_4q34.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D44V6.png)
P value = 0.00191 (Fisher's exact test), Q value = 0.0046
Table S344. Gene #44: 'del_4q34.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 12(4Q34.3) MUTATED | 41 | 73 | 54 |
DEL PEAK 12(4Q34.3) WILD-TYPE | 192 | 162 | 138 |
Figure S344. Get High-res Image Gene #44: 'del_4q34.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D44V9.png)
P value = 0.00022 (Fisher's exact test), Q value = 0.00064
Table S345. Gene #44: 'del_4q34.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 12(4Q34.3) MUTATED | 31 | 56 | 81 |
DEL PEAK 12(4Q34.3) WILD-TYPE | 172 | 134 | 186 |
Figure S345. Get High-res Image Gene #44: 'del_4q34.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D44V10.png)
P value = 0.0304 (Fisher's exact test), Q value = 0.053
Table S346. Gene #44: 'del_4q34.3' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 12(4Q34.3) MUTATED | 25 | 31 | 52 | 29 |
DEL PEAK 12(4Q34.3) WILD-TYPE | 112 | 76 | 131 | 53 |
Figure S346. Get High-res Image Gene #44: 'del_4q34.3' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D44V11.png)
P value = 0.0378 (Fisher's exact test), Q value = 0.065
Table S347. Gene #44: 'del_4q34.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 12(4Q34.3) MUTATED | 62 | 57 | 18 |
DEL PEAK 12(4Q34.3) WILD-TYPE | 160 | 127 | 85 |
Figure S347. Get High-res Image Gene #44: 'del_4q34.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D44V12.png)
P value = 0.00103 (Fisher's exact test), Q value = 0.0027
Table S348. Gene #44: 'del_4q34.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 12(4Q34.3) MUTATED | 33 | 55 | 49 |
DEL PEAK 12(4Q34.3) WILD-TYPE | 152 | 106 | 110 |
Figure S348. Get High-res Image Gene #44: 'del_4q34.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D44V13.png)
P value = 0.00545 (Fisher's exact test), Q value = 0.012
Table S349. Gene #44: 'del_4q34.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 12(4Q34.3) MUTATED | 24 | 46 | 55 | 12 |
DEL PEAK 12(4Q34.3) WILD-TYPE | 67 | 91 | 133 | 77 |
Figure S349. Get High-res Image Gene #44: 'del_4q34.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D44V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S350. Gene #45: 'del_5p15.33' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 13(5P15.33) MUTATED | 5 | 22 | 10 | 14 |
DEL PEAK 13(5P15.33) WILD-TYPE | 142 | 74 | 142 | 99 |
Figure S350. Get High-res Image Gene #45: 'del_5p15.33' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D45V1.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S351. Gene #45: 'del_5p15.33' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 13(5P15.33) MUTATED | 7 | 24 | 8 | 12 |
DEL PEAK 13(5P15.33) WILD-TYPE | 141 | 78 | 92 | 146 |
Figure S351. Get High-res Image Gene #45: 'del_5p15.33' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D45V2.png)
P value = 0.00142 (Fisher's exact test), Q value = 0.0035
Table S352. Gene #45: 'del_5p15.33' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 13(5P15.33) MUTATED | 6 | 28 | 10 | 7 |
DEL PEAK 13(5P15.33) WILD-TYPE | 150 | 155 | 77 | 113 |
Figure S352. Get High-res Image Gene #45: 'del_5p15.33' versus Molecular Subtype #3: 'MIR_CNMF'
![](D45V3.png)
P value = 0.00648 (Fisher's exact test), Q value = 0.013
Table S353. Gene #45: 'del_5p15.33' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 13(5P15.33) MUTATED | 40 | 63 | 4 |
DEL PEAK 13(5P15.33) WILD-TYPE | 493 | 479 | 11 |
Figure S353. Get High-res Image Gene #45: 'del_5p15.33' versus Molecular Subtype #5: 'CN_CNMF'
![](D45V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S354. Gene #45: 'del_5p15.33' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 13(5P15.33) MUTATED | 16 | 41 | 3 | 3 |
DEL PEAK 13(5P15.33) WILD-TYPE | 168 | 196 | 61 | 162 |
Figure S354. Get High-res Image Gene #45: 'del_5p15.33' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D45V6.png)
P value = 0.00296 (Fisher's exact test), Q value = 0.0068
Table S355. Gene #45: 'del_5p15.33' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 13(5P15.33) MUTATED | 20 | 31 | 17 |
DEL PEAK 13(5P15.33) WILD-TYPE | 183 | 159 | 250 |
Figure S355. Get High-res Image Gene #45: 'del_5p15.33' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D45V10.png)
P value = 0.00207 (Fisher's exact test), Q value = 0.0049
Table S356. Gene #45: 'del_5p15.33' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 13(5P15.33) MUTATED | 11 | 20 | 17 | 2 |
DEL PEAK 13(5P15.33) WILD-TYPE | 126 | 87 | 166 | 80 |
Figure S356. Get High-res Image Gene #45: 'del_5p15.33' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D45V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S357. Gene #46: 'del_5q34' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 14(5Q34) MUTATED | 8 | 26 | 12 | 17 |
DEL PEAK 14(5Q34) WILD-TYPE | 139 | 70 | 140 | 96 |
Figure S357. Get High-res Image Gene #46: 'del_5q34' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D46V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S358. Gene #46: 'del_5q34' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 14(5Q34) MUTATED | 10 | 31 | 11 | 11 |
DEL PEAK 14(5Q34) WILD-TYPE | 138 | 71 | 89 | 147 |
Figure S358. Get High-res Image Gene #46: 'del_5q34' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D46V2.png)
P value = 6e-05 (Fisher's exact test), Q value = 2e-04
Table S359. Gene #46: 'del_5q34' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 14(5Q34) MUTATED | 6 | 36 | 9 | 11 |
DEL PEAK 14(5Q34) WILD-TYPE | 150 | 147 | 78 | 109 |
Figure S359. Get High-res Image Gene #46: 'del_5q34' versus Molecular Subtype #3: 'MIR_CNMF'
![](D46V3.png)
P value = 0.00579 (Fisher's exact test), Q value = 0.012
Table S360. Gene #46: 'del_5q34' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 14(5Q34) MUTATED | 42 | 5 | 15 |
DEL PEAK 14(5Q34) WILD-TYPE | 251 | 119 | 114 |
Figure S360. Get High-res Image Gene #46: 'del_5q34' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D46V4.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00037
Table S361. Gene #46: 'del_5q34' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 14(5Q34) MUTATED | 45 | 83 | 5 |
DEL PEAK 14(5Q34) WILD-TYPE | 488 | 459 | 10 |
Figure S361. Get High-res Image Gene #46: 'del_5q34' versus Molecular Subtype #5: 'CN_CNMF'
![](D46V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S362. Gene #46: 'del_5q34' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 14(5Q34) MUTATED | 19 | 55 | 4 | 2 |
DEL PEAK 14(5Q34) WILD-TYPE | 165 | 182 | 60 | 163 |
Figure S362. Get High-res Image Gene #46: 'del_5q34' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D46V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S363. Gene #46: 'del_5q34' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 14(5Q34) MUTATED | 24 | 46 | 18 |
DEL PEAK 14(5Q34) WILD-TYPE | 179 | 144 | 249 |
Figure S363. Get High-res Image Gene #46: 'del_5q34' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D46V10.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00037
Table S364. Gene #46: 'del_5q34' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 14(5Q34) MUTATED | 15 | 27 | 18 | 3 |
DEL PEAK 14(5Q34) WILD-TYPE | 122 | 80 | 165 | 79 |
Figure S364. Get High-res Image Gene #46: 'del_5q34' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D46V11.png)
P value = 0.0213 (Fisher's exact test), Q value = 0.039
Table S365. Gene #47: 'del_6p25.3' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 15(6P25.3) MUTATED | 82 | 54 | 2 |
DEL PEAK 15(6P25.3) WILD-TYPE | 451 | 488 | 13 |
Figure S365. Get High-res Image Gene #47: 'del_6p25.3' versus Molecular Subtype #5: 'CN_CNMF'
![](D47V5.png)
P value = 0.00781 (Fisher's exact test), Q value = 0.016
Table S366. Gene #47: 'del_6p25.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 15(6P25.3) MUTATED | 23 | 28 | 12 | 8 |
DEL PEAK 15(6P25.3) WILD-TYPE | 161 | 209 | 52 | 157 |
Figure S366. Get High-res Image Gene #47: 'del_6p25.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D47V6.png)
P value = 0.0136 (Fisher's exact test), Q value = 0.026
Table S367. Gene #47: 'del_6p25.3' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 15(6P25.3) MUTATED | 42 | 23 | 19 |
DEL PEAK 15(6P25.3) WILD-TYPE | 192 | 231 | 139 |
Figure S367. Get High-res Image Gene #47: 'del_6p25.3' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D47V8.png)
P value = 0.00192 (Fisher's exact test), Q value = 0.0046
Table S368. Gene #47: 'del_6p25.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 15(6P25.3) MUTATED | 42 | 23 | 14 |
DEL PEAK 15(6P25.3) WILD-TYPE | 191 | 212 | 178 |
Figure S368. Get High-res Image Gene #47: 'del_6p25.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D47V9.png)
P value = 0.00143 (Fisher's exact test), Q value = 0.0035
Table S369. Gene #47: 'del_6p25.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 15(6P25.3) MUTATED | 37 | 23 | 19 |
DEL PEAK 15(6P25.3) WILD-TYPE | 166 | 167 | 248 |
Figure S369. Get High-res Image Gene #47: 'del_6p25.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D47V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S370. Gene #48: 'del_6q22.31' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 16(6Q22.31) MUTATED | 155 | 79 | 2 |
DEL PEAK 16(6Q22.31) WILD-TYPE | 378 | 463 | 13 |
Figure S370. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #5: 'CN_CNMF'
![](D48V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S371. Gene #48: 'del_6q22.31' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 16(6Q22.31) MUTATED | 44 | 49 | 15 | 8 |
DEL PEAK 16(6Q22.31) WILD-TYPE | 140 | 188 | 49 | 157 |
Figure S371. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D48V6.png)
P value = 0.00353 (Fisher's exact test), Q value = 0.008
Table S372. Gene #48: 'del_6q22.31' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 16(6Q22.31) MUTATED | 51 | 24 | 49 |
DEL PEAK 16(6Q22.31) WILD-TYPE | 173 | 180 | 169 |
Figure S372. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D48V7.png)
P value = 0.00188 (Fisher's exact test), Q value = 0.0045
Table S373. Gene #48: 'del_6q22.31' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 16(6Q22.31) MUTATED | 58 | 49 | 17 |
DEL PEAK 16(6Q22.31) WILD-TYPE | 176 | 205 | 141 |
Figure S373. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D48V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S374. Gene #48: 'del_6q22.31' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 16(6Q22.31) MUTATED | 72 | 39 | 20 |
DEL PEAK 16(6Q22.31) WILD-TYPE | 161 | 196 | 172 |
Figure S374. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D48V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S375. Gene #48: 'del_6q22.31' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 16(6Q22.31) MUTATED | 66 | 39 | 26 |
DEL PEAK 16(6Q22.31) WILD-TYPE | 137 | 151 | 241 |
Figure S375. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D48V10.png)
P value = 0.00067 (Fisher's exact test), Q value = 0.0018
Table S376. Gene #48: 'del_6q22.31' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 16(6Q22.31) MUTATED | 34 | 18 | 19 | 6 |
DEL PEAK 16(6Q22.31) WILD-TYPE | 103 | 89 | 164 | 76 |
Figure S376. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D48V11.png)
P value = 0.00596 (Fisher's exact test), Q value = 0.012
Table S377. Gene #48: 'del_6q22.31' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 16(6Q22.31) MUTATED | 40 | 18 | 17 |
DEL PEAK 16(6Q22.31) WILD-TYPE | 145 | 143 | 142 |
Figure S377. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D48V13.png)
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
Table S378. Gene #48: 'del_6q22.31' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 16(6Q22.31) MUTATED | 24 | 11 | 18 | 22 |
DEL PEAK 16(6Q22.31) WILD-TYPE | 67 | 126 | 170 | 67 |
Figure S378. Get High-res Image Gene #48: 'del_6q22.31' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D48V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S379. Gene #49: 'del_6q26' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 17(6Q26) MUTATED | 176 | 83 | 2 |
DEL PEAK 17(6Q26) WILD-TYPE | 357 | 459 | 13 |
Figure S379. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #5: 'CN_CNMF'
![](D49V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S380. Gene #49: 'del_6q26' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 17(6Q26) MUTATED | 52 | 51 | 14 | 8 |
DEL PEAK 17(6Q26) WILD-TYPE | 132 | 186 | 50 | 157 |
Figure S380. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D49V6.png)
P value = 0.00014 (Fisher's exact test), Q value = 0.00043
Table S381. Gene #49: 'del_6q26' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 17(6Q26) MUTATED | 62 | 25 | 56 |
DEL PEAK 17(6Q26) WILD-TYPE | 162 | 179 | 162 |
Figure S381. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D49V7.png)
P value = 6e-05 (Fisher's exact test), Q value = 2e-04
Table S382. Gene #49: 'del_6q26' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 17(6Q26) MUTATED | 66 | 61 | 16 |
DEL PEAK 17(6Q26) WILD-TYPE | 168 | 193 | 142 |
Figure S382. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D49V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S383. Gene #49: 'del_6q26' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 17(6Q26) MUTATED | 75 | 43 | 20 |
DEL PEAK 17(6Q26) WILD-TYPE | 158 | 192 | 172 |
Figure S383. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D49V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S384. Gene #49: 'del_6q26' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 17(6Q26) MUTATED | 69 | 43 | 26 |
DEL PEAK 17(6Q26) WILD-TYPE | 134 | 147 | 241 |
Figure S384. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D49V10.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00014
Table S385. Gene #49: 'del_6q26' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 17(6Q26) MUTATED | 39 | 17 | 20 | 5 |
DEL PEAK 17(6Q26) WILD-TYPE | 98 | 90 | 163 | 77 |
Figure S385. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D49V11.png)
P value = 0.00378 (Fisher's exact test), Q value = 0.0084
Table S386. Gene #49: 'del_6q26' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 17(6Q26) MUTATED | 42 | 18 | 18 |
DEL PEAK 17(6Q26) WILD-TYPE | 143 | 143 | 141 |
Figure S386. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D49V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S387. Gene #49: 'del_6q26' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 17(6Q26) MUTATED | 27 | 11 | 19 | 21 |
DEL PEAK 17(6Q26) WILD-TYPE | 64 | 126 | 169 | 68 |
Figure S387. Get High-res Image Gene #49: 'del_6q26' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D49V14.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00014
Table S388. Gene #50: 'del_8p23.2' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 18(8P23.2) MUTATED | 64 | 24 | 0 |
DEL PEAK 18(8P23.2) WILD-TYPE | 469 | 518 | 15 |
Figure S388. Get High-res Image Gene #50: 'del_8p23.2' versus Molecular Subtype #5: 'CN_CNMF'
![](D50V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S389. Gene #50: 'del_8p23.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 18(8P23.2) MUTATED | 23 | 11 | 1 | 0 |
DEL PEAK 18(8P23.2) WILD-TYPE | 161 | 226 | 63 | 165 |
Figure S389. Get High-res Image Gene #50: 'del_8p23.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D50V6.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00051
Table S390. Gene #50: 'del_8p23.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 18(8P23.2) MUTATED | 25 | 5 | 6 |
DEL PEAK 18(8P23.2) WILD-TYPE | 208 | 230 | 186 |
Figure S390. Get High-res Image Gene #50: 'del_8p23.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D50V9.png)
P value = 0.00026 (Fisher's exact test), Q value = 0.00075
Table S391. Gene #50: 'del_8p23.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 18(8P23.2) MUTATED | 22 | 8 | 6 |
DEL PEAK 18(8P23.2) WILD-TYPE | 181 | 182 | 261 |
Figure S391. Get High-res Image Gene #50: 'del_8p23.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D50V10.png)
P value = 0.00765 (Fisher's exact test), Q value = 0.016
Table S392. Gene #50: 'del_8p23.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 18(8P23.2) MUTATED | 9 | 3 | 10 |
DEL PEAK 18(8P23.2) WILD-TYPE | 213 | 181 | 93 |
Figure S392. Get High-res Image Gene #50: 'del_8p23.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D50V12.png)
P value = 0.00138 (Fisher's exact test), Q value = 0.0034
Table S393. Gene #50: 'del_8p23.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 18(8P23.2) MUTATED | 1 | 7 | 3 | 10 |
DEL PEAK 18(8P23.2) WILD-TYPE | 90 | 130 | 185 | 79 |
Figure S393. Get High-res Image Gene #50: 'del_8p23.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D50V14.png)
P value = 0.00339 (Fisher's exact test), Q value = 0.0077
Table S394. Gene #51: 'del_8q24.3' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 19(8Q24.3) MUTATED | 25 | 14 | 8 | 4 |
DEL PEAK 19(8Q24.3) WILD-TYPE | 131 | 169 | 79 | 116 |
Figure S394. Get High-res Image Gene #51: 'del_8q24.3' versus Molecular Subtype #3: 'MIR_CNMF'
![](D51V3.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00032
Table S395. Gene #51: 'del_8q24.3' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 19(8Q24.3) MUTATED | 57 | 21 | 0 |
DEL PEAK 19(8Q24.3) WILD-TYPE | 476 | 521 | 15 |
Figure S395. Get High-res Image Gene #51: 'del_8q24.3' versus Molecular Subtype #5: 'CN_CNMF'
![](D51V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S396. Gene #51: 'del_8q24.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 19(8Q24.3) MUTATED | 20 | 17 | 1 | 0 |
DEL PEAK 19(8Q24.3) WILD-TYPE | 164 | 220 | 63 | 165 |
Figure S396. Get High-res Image Gene #51: 'del_8q24.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D51V6.png)
P value = 0.0238 (Fisher's exact test), Q value = 0.043
Table S397. Gene #51: 'del_8q24.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 19(8Q24.3) MUTATED | 22 | 10 | 7 |
DEL PEAK 19(8Q24.3) WILD-TYPE | 211 | 225 | 185 |
Figure S397. Get High-res Image Gene #51: 'del_8q24.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D51V9.png)
P value = 0.00361 (Fisher's exact test), Q value = 0.0081
Table S398. Gene #51: 'del_8q24.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 19(8Q24.3) MUTATED | 20 | 12 | 7 |
DEL PEAK 19(8Q24.3) WILD-TYPE | 183 | 178 | 260 |
Figure S398. Get High-res Image Gene #51: 'del_8q24.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D51V10.png)
P value = 0.00496 (Fisher's exact test), Q value = 0.011
Table S399. Gene #51: 'del_8q24.3' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 19(8Q24.3) MUTATED | 12 | 9 | 6 | 0 |
DEL PEAK 19(8Q24.3) WILD-TYPE | 125 | 98 | 177 | 82 |
Figure S399. Get High-res Image Gene #51: 'del_8q24.3' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D51V11.png)
P value = 0.00137 (Fisher's exact test), Q value = 0.0034
Table S400. Gene #51: 'del_8q24.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 19(8Q24.3) MUTATED | 10 | 4 | 13 |
DEL PEAK 19(8Q24.3) WILD-TYPE | 212 | 180 | 90 |
Figure S400. Get High-res Image Gene #51: 'del_8q24.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D51V12.png)
P value = 0.0225 (Fisher's exact test), Q value = 0.041
Table S401. Gene #51: 'del_8q24.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 19(8Q24.3) MUTATED | 7 | 6 | 4 | 9 |
DEL PEAK 19(8Q24.3) WILD-TYPE | 84 | 131 | 184 | 80 |
Figure S401. Get High-res Image Gene #51: 'del_8q24.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D51V14.png)
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
Table S402. Gene #52: 'del_9p21.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 20(9P21.3) MUTATED | 100 | 59 | 132 | 75 |
DEL PEAK 20(9P21.3) WILD-TYPE | 47 | 37 | 20 | 38 |
Figure S402. Get High-res Image Gene #52: 'del_9p21.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D52V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
Table S403. Gene #52: 'del_9p21.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 20(9P21.3) MUTATED | 101 | 60 | 91 | 114 |
DEL PEAK 20(9P21.3) WILD-TYPE | 47 | 42 | 9 | 44 |
Figure S403. Get High-res Image Gene #52: 'del_9p21.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D52V2.png)
P value = 0.0174 (Fisher's exact test), Q value = 0.033
Table S404. Gene #52: 'del_9p21.3' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 20(9P21.3) MUTATED | 196 | 96 | 101 |
DEL PEAK 20(9P21.3) WILD-TYPE | 97 | 28 | 28 |
Figure S404. Get High-res Image Gene #52: 'del_9p21.3' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D52V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S405. Gene #52: 'del_9p21.3' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 20(9P21.3) MUTATED | 406 | 181 | 6 |
DEL PEAK 20(9P21.3) WILD-TYPE | 127 | 361 | 9 |
Figure S405. Get High-res Image Gene #52: 'del_9p21.3' versus Molecular Subtype #5: 'CN_CNMF'
![](D52V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S406. Gene #52: 'del_9p21.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 20(9P21.3) MUTATED | 142 | 93 | 20 | 28 |
DEL PEAK 20(9P21.3) WILD-TYPE | 42 | 144 | 44 | 137 |
Figure S406. Get High-res Image Gene #52: 'del_9p21.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D52V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S407. Gene #52: 'del_9p21.3' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 20(9P21.3) MUTATED | 113 | 73 | 135 |
DEL PEAK 20(9P21.3) WILD-TYPE | 111 | 131 | 83 |
Figure S407. Get High-res Image Gene #52: 'del_9p21.3' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D52V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S408. Gene #52: 'del_9p21.3' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 20(9P21.3) MUTATED | 142 | 127 | 52 |
DEL PEAK 20(9P21.3) WILD-TYPE | 92 | 127 | 106 |
Figure S408. Get High-res Image Gene #52: 'del_9p21.3' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D52V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S409. Gene #52: 'del_9p21.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 20(9P21.3) MUTATED | 160 | 62 | 56 |
DEL PEAK 20(9P21.3) WILD-TYPE | 73 | 173 | 136 |
Figure S409. Get High-res Image Gene #52: 'del_9p21.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D52V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S410. Gene #52: 'del_9p21.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 20(9P21.3) MUTATED | 144 | 65 | 69 |
DEL PEAK 20(9P21.3) WILD-TYPE | 59 | 125 | 198 |
Figure S410. Get High-res Image Gene #52: 'del_9p21.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D52V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S411. Gene #52: 'del_9p21.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 20(9P21.3) MUTATED | 59 | 56 | 59 |
DEL PEAK 20(9P21.3) WILD-TYPE | 163 | 128 | 44 |
Figure S411. Get High-res Image Gene #52: 'del_9p21.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D52V12.png)
P value = 0.0012 (Fisher's exact test), Q value = 0.003
Table S412. Gene #52: 'del_9p21.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 20(9P21.3) MUTATED | 81 | 41 | 51 |
DEL PEAK 20(9P21.3) WILD-TYPE | 104 | 120 | 108 |
Figure S412. Get High-res Image Gene #52: 'del_9p21.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D52V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S413. Gene #52: 'del_9p21.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 20(9P21.3) MUTATED | 31 | 28 | 54 | 60 |
DEL PEAK 20(9P21.3) WILD-TYPE | 60 | 109 | 134 | 29 |
Figure S413. Get High-res Image Gene #52: 'del_9p21.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D52V14.png)
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
Table S414. Gene #53: 'del_10p15.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 21(10P15.3) MUTATED | 129 | 63 | 134 | 82 |
DEL PEAK 21(10P15.3) WILD-TYPE | 18 | 33 | 18 | 31 |
Figure S414. Get High-res Image Gene #53: 'del_10p15.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D53V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S415. Gene #53: 'del_10p15.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 21(10P15.3) MUTATED | 125 | 59 | 89 | 135 |
DEL PEAK 21(10P15.3) WILD-TYPE | 23 | 43 | 11 | 23 |
Figure S415. Get High-res Image Gene #53: 'del_10p15.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D53V2.png)
P value = 0.00822 (Fisher's exact test), Q value = 0.017
Table S416. Gene #53: 'del_10p15.3' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 21(10P15.3) MUTATED | 139 | 137 | 70 | 97 |
DEL PEAK 21(10P15.3) WILD-TYPE | 17 | 46 | 17 | 23 |
Figure S416. Get High-res Image Gene #53: 'del_10p15.3' versus Molecular Subtype #3: 'MIR_CNMF'
![](D53V3.png)
P value = 0.00355 (Fisher's exact test), Q value = 0.008
Table S417. Gene #53: 'del_10p15.3' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 21(10P15.3) MUTATED | 223 | 105 | 115 |
DEL PEAK 21(10P15.3) WILD-TYPE | 70 | 19 | 14 |
Figure S417. Get High-res Image Gene #53: 'del_10p15.3' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D53V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S418. Gene #53: 'del_10p15.3' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 21(10P15.3) MUTATED | 488 | 52 | 13 |
DEL PEAK 21(10P15.3) WILD-TYPE | 45 | 490 | 2 |
Figure S418. Get High-res Image Gene #53: 'del_10p15.3' versus Molecular Subtype #5: 'CN_CNMF'
![](D53V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S419. Gene #53: 'del_10p15.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 21(10P15.3) MUTATED | 168 | 8 | 21 | 7 |
DEL PEAK 21(10P15.3) WILD-TYPE | 16 | 229 | 43 | 158 |
Figure S419. Get High-res Image Gene #53: 'del_10p15.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D53V6.png)
P value = 0.00039 (Fisher's exact test), Q value = 0.0011
Table S420. Gene #53: 'del_10p15.3' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 21(10P15.3) MUTATED | 90 | 56 | 100 |
DEL PEAK 21(10P15.3) WILD-TYPE | 134 | 148 | 118 |
Figure S420. Get High-res Image Gene #53: 'del_10p15.3' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D53V7.png)
P value = 0.00061 (Fisher's exact test), Q value = 0.0017
Table S421. Gene #53: 'del_10p15.3' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 21(10P15.3) MUTATED | 98 | 108 | 40 |
DEL PEAK 21(10P15.3) WILD-TYPE | 136 | 146 | 118 |
Figure S421. Get High-res Image Gene #53: 'del_10p15.3' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D53V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S422. Gene #53: 'del_10p15.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 21(10P15.3) MUTATED | 184 | 4 | 22 |
DEL PEAK 21(10P15.3) WILD-TYPE | 49 | 231 | 170 |
Figure S422. Get High-res Image Gene #53: 'del_10p15.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D53V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S423. Gene #53: 'del_10p15.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 21(10P15.3) MUTATED | 178 | 9 | 23 |
DEL PEAK 21(10P15.3) WILD-TYPE | 25 | 181 | 244 |
Figure S423. Get High-res Image Gene #53: 'del_10p15.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D53V10.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00029
Table S424. Gene #53: 'del_10p15.3' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 21(10P15.3) MUTATED | 33 | 26 | 19 | 5 |
DEL PEAK 21(10P15.3) WILD-TYPE | 104 | 81 | 164 | 77 |
Figure S424. Get High-res Image Gene #53: 'del_10p15.3' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D53V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S425. Gene #53: 'del_10p15.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 21(10P15.3) MUTATED | 11 | 13 | 59 |
DEL PEAK 21(10P15.3) WILD-TYPE | 211 | 171 | 44 |
Figure S425. Get High-res Image Gene #53: 'del_10p15.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D53V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S426. Gene #53: 'del_10p15.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 21(10P15.3) MUTATED | 61 | 4 | 18 |
DEL PEAK 21(10P15.3) WILD-TYPE | 124 | 157 | 141 |
Figure S426. Get High-res Image Gene #53: 'del_10p15.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D53V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S427. Gene #53: 'del_10p15.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 21(10P15.3) MUTATED | 4 | 6 | 10 | 63 |
DEL PEAK 21(10P15.3) WILD-TYPE | 87 | 131 | 178 | 26 |
Figure S427. Get High-res Image Gene #53: 'del_10p15.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D53V14.png)
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
Table S428. Gene #54: 'del_10p13' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 22(10P13) MUTATED | 131 | 65 | 135 | 79 |
DEL PEAK 22(10P13) WILD-TYPE | 16 | 31 | 17 | 34 |
Figure S428. Get High-res Image Gene #54: 'del_10p13' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D54V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S429. Gene #54: 'del_10p13' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 22(10P13) MUTATED | 129 | 58 | 89 | 134 |
DEL PEAK 22(10P13) WILD-TYPE | 19 | 44 | 11 | 24 |
Figure S429. Get High-res Image Gene #54: 'del_10p13' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D54V2.png)
P value = 0.00248 (Fisher's exact test), Q value = 0.0058
Table S430. Gene #54: 'del_10p13' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 22(10P13) MUTATED | 141 | 138 | 68 | 99 |
DEL PEAK 22(10P13) WILD-TYPE | 15 | 45 | 19 | 21 |
Figure S430. Get High-res Image Gene #54: 'del_10p13' versus Molecular Subtype #3: 'MIR_CNMF'
![](D54V3.png)
P value = 0.00133 (Fisher's exact test), Q value = 0.0033
Table S431. Gene #54: 'del_10p13' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 22(10P13) MUTATED | 223 | 108 | 115 |
DEL PEAK 22(10P13) WILD-TYPE | 70 | 16 | 14 |
Figure S431. Get High-res Image Gene #54: 'del_10p13' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D54V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S432. Gene #54: 'del_10p13' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 22(10P13) MUTATED | 489 | 51 | 13 |
DEL PEAK 22(10P13) WILD-TYPE | 44 | 491 | 2 |
Figure S432. Get High-res Image Gene #54: 'del_10p13' versus Molecular Subtype #5: 'CN_CNMF'
![](D54V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S433. Gene #54: 'del_10p13' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 22(10P13) MUTATED | 168 | 6 | 21 | 7 |
DEL PEAK 22(10P13) WILD-TYPE | 16 | 231 | 43 | 158 |
Figure S433. Get High-res Image Gene #54: 'del_10p13' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D54V6.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00017
Table S434. Gene #54: 'del_10p13' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 22(10P13) MUTATED | 92 | 52 | 99 |
DEL PEAK 22(10P13) WILD-TYPE | 132 | 152 | 119 |
Figure S434. Get High-res Image Gene #54: 'del_10p13' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D54V7.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00023
Table S435. Gene #54: 'del_10p13' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 22(10P13) MUTATED | 99 | 108 | 36 |
DEL PEAK 22(10P13) WILD-TYPE | 135 | 146 | 122 |
Figure S435. Get High-res Image Gene #54: 'del_10p13' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D54V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S436. Gene #54: 'del_10p13' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 22(10P13) MUTATED | 184 | 4 | 21 |
DEL PEAK 22(10P13) WILD-TYPE | 49 | 231 | 171 |
Figure S436. Get High-res Image Gene #54: 'del_10p13' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D54V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S437. Gene #54: 'del_10p13' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 22(10P13) MUTATED | 178 | 9 | 22 |
DEL PEAK 22(10P13) WILD-TYPE | 25 | 181 | 245 |
Figure S437. Get High-res Image Gene #54: 'del_10p13' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D54V10.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00014
Table S438. Gene #54: 'del_10p13' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 22(10P13) MUTATED | 33 | 26 | 18 | 5 |
DEL PEAK 22(10P13) WILD-TYPE | 104 | 81 | 165 | 77 |
Figure S438. Get High-res Image Gene #54: 'del_10p13' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D54V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S439. Gene #54: 'del_10p13' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 22(10P13) MUTATED | 11 | 11 | 60 |
DEL PEAK 22(10P13) WILD-TYPE | 211 | 173 | 43 |
Figure S439. Get High-res Image Gene #54: 'del_10p13' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D54V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S440. Gene #54: 'del_10p13' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 22(10P13) MUTATED | 62 | 3 | 17 |
DEL PEAK 22(10P13) WILD-TYPE | 123 | 158 | 142 |
Figure S440. Get High-res Image Gene #54: 'del_10p13' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D54V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S441. Gene #54: 'del_10p13' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 22(10P13) MUTATED | 4 | 5 | 9 | 64 |
DEL PEAK 22(10P13) WILD-TYPE | 87 | 132 | 179 | 25 |
Figure S441. Get High-res Image Gene #54: 'del_10p13' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D54V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S442. Gene #55: 'del_10p11.23' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 23(10P11.23) MUTATED | 130 | 61 | 142 | 83 |
DEL PEAK 23(10P11.23) WILD-TYPE | 17 | 35 | 10 | 30 |
Figure S442. Get High-res Image Gene #55: 'del_10p11.23' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D55V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S443. Gene #55: 'del_10p11.23' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 23(10P11.23) MUTATED | 127 | 60 | 93 | 136 |
DEL PEAK 23(10P11.23) WILD-TYPE | 21 | 42 | 7 | 22 |
Figure S443. Get High-res Image Gene #55: 'del_10p11.23' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D55V2.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00037
Table S444. Gene #55: 'del_10p11.23' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 23(10P11.23) MUTATED | 145 | 139 | 67 | 99 |
DEL PEAK 23(10P11.23) WILD-TYPE | 11 | 44 | 20 | 21 |
Figure S444. Get High-res Image Gene #55: 'del_10p11.23' versus Molecular Subtype #3: 'MIR_CNMF'
![](D55V3.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00011
Table S445. Gene #55: 'del_10p11.23' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 23(10P11.23) MUTATED | 223 | 106 | 121 |
DEL PEAK 23(10P11.23) WILD-TYPE | 70 | 18 | 8 |
Figure S445. Get High-res Image Gene #55: 'del_10p11.23' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D55V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S446. Gene #55: 'del_10p11.23' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 23(10P11.23) MUTATED | 496 | 49 | 13 |
DEL PEAK 23(10P11.23) WILD-TYPE | 37 | 493 | 2 |
Figure S446. Get High-res Image Gene #55: 'del_10p11.23' versus Molecular Subtype #5: 'CN_CNMF'
![](D55V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S447. Gene #55: 'del_10p11.23' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 23(10P11.23) MUTATED | 169 | 6 | 21 | 7 |
DEL PEAK 23(10P11.23) WILD-TYPE | 15 | 231 | 43 | 158 |
Figure S447. Get High-res Image Gene #55: 'del_10p11.23' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D55V6.png)
P value = 0.00062 (Fisher's exact test), Q value = 0.0017
Table S448. Gene #55: 'del_10p11.23' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 23(10P11.23) MUTATED | 91 | 57 | 99 |
DEL PEAK 23(10P11.23) WILD-TYPE | 133 | 147 | 119 |
Figure S448. Get High-res Image Gene #55: 'del_10p11.23' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D55V7.png)
P value = 0.00024 (Fisher's exact test), Q value = 0.00069
Table S449. Gene #55: 'del_10p11.23' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 23(10P11.23) MUTATED | 99 | 109 | 39 |
DEL PEAK 23(10P11.23) WILD-TYPE | 135 | 145 | 119 |
Figure S449. Get High-res Image Gene #55: 'del_10p11.23' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D55V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S450. Gene #55: 'del_10p11.23' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 23(10P11.23) MUTATED | 185 | 3 | 23 |
DEL PEAK 23(10P11.23) WILD-TYPE | 48 | 232 | 169 |
Figure S450. Get High-res Image Gene #55: 'del_10p11.23' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D55V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S451. Gene #55: 'del_10p11.23' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 23(10P11.23) MUTATED | 179 | 8 | 24 |
DEL PEAK 23(10P11.23) WILD-TYPE | 24 | 182 | 243 |
Figure S451. Get High-res Image Gene #55: 'del_10p11.23' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D55V10.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00014
Table S452. Gene #55: 'del_10p11.23' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 23(10P11.23) MUTATED | 33 | 26 | 19 | 4 |
DEL PEAK 23(10P11.23) WILD-TYPE | 104 | 81 | 164 | 78 |
Figure S452. Get High-res Image Gene #55: 'del_10p11.23' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D55V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S453. Gene #55: 'del_10p11.23' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 23(10P11.23) MUTATED | 11 | 13 | 58 |
DEL PEAK 23(10P11.23) WILD-TYPE | 211 | 171 | 45 |
Figure S453. Get High-res Image Gene #55: 'del_10p11.23' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D55V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S454. Gene #55: 'del_10p11.23' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 23(10P11.23) MUTATED | 60 | 3 | 19 |
DEL PEAK 23(10P11.23) WILD-TYPE | 125 | 158 | 140 |
Figure S454. Get High-res Image Gene #55: 'del_10p11.23' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D55V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S455. Gene #55: 'del_10p11.23' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 23(10P11.23) MUTATED | 4 | 5 | 11 | 62 |
DEL PEAK 23(10P11.23) WILD-TYPE | 87 | 132 | 177 | 27 |
Figure S455. Get High-res Image Gene #55: 'del_10p11.23' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D55V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S456. Gene #56: 'del_10q23.31' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 24(10Q23.31) MUTATED | 136 | 75 | 147 | 91 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 11 | 21 | 5 | 22 |
Figure S456. Get High-res Image Gene #56: 'del_10q23.31' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D56V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S457. Gene #56: 'del_10q23.31' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 24(10Q23.31) MUTATED | 132 | 75 | 98 | 144 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 16 | 27 | 2 | 14 |
Figure S457. Get High-res Image Gene #56: 'del_10q23.31' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D56V2.png)
P value = 0.0121 (Fisher's exact test), Q value = 0.024
Table S458. Gene #56: 'del_10q23.31' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 24(10Q23.31) MUTATED | 148 | 158 | 72 | 107 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 8 | 25 | 15 | 13 |
Figure S458. Get High-res Image Gene #56: 'del_10q23.31' versus Molecular Subtype #3: 'MIR_CNMF'
![](D56V3.png)
P value = 0.00299 (Fisher's exact test), Q value = 0.0069
Table S459. Gene #56: 'del_10q23.31' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 24(10Q23.31) MUTATED | 248 | 115 | 122 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 45 | 9 | 7 |
Figure S459. Get High-res Image Gene #56: 'del_10q23.31' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D56V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S460. Gene #56: 'del_10q23.31' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 24(10Q23.31) MUTATED | 513 | 100 | 15 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 20 | 442 | 0 |
Figure S460. Get High-res Image Gene #56: 'del_10q23.31' versus Molecular Subtype #5: 'CN_CNMF'
![](D56V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S461. Gene #56: 'del_10q23.31' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 24(10Q23.31) MUTATED | 175 | 37 | 21 | 8 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 9 | 200 | 43 | 157 |
Figure S461. Get High-res Image Gene #56: 'del_10q23.31' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D56V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S462. Gene #56: 'del_10q23.31' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 24(10Q23.31) MUTATED | 109 | 58 | 121 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 115 | 146 | 97 |
Figure S462. Get High-res Image Gene #56: 'del_10q23.31' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D56V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S463. Gene #56: 'del_10q23.31' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 24(10Q23.31) MUTATED | 123 | 123 | 42 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 111 | 131 | 116 |
Figure S463. Get High-res Image Gene #56: 'del_10q23.31' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D56V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S464. Gene #56: 'del_10q23.31' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 24(10Q23.31) MUTATED | 197 | 24 | 27 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 36 | 211 | 165 |
Figure S464. Get High-res Image Gene #56: 'del_10q23.31' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D56V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S465. Gene #56: 'del_10q23.31' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 24(10Q23.31) MUTATED | 186 | 32 | 30 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 17 | 158 | 237 |
Figure S465. Get High-res Image Gene #56: 'del_10q23.31' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D56V10.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00014
Table S466. Gene #56: 'del_10q23.31' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 24(10Q23.31) MUTATED | 40 | 37 | 29 | 8 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 97 | 70 | 154 | 74 |
Figure S466. Get High-res Image Gene #56: 'del_10q23.31' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D56V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S467. Gene #56: 'del_10q23.31' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 24(10Q23.31) MUTATED | 24 | 18 | 72 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 198 | 166 | 31 |
Figure S467. Get High-res Image Gene #56: 'del_10q23.31' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D56V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S468. Gene #56: 'del_10q23.31' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 24(10Q23.31) MUTATED | 75 | 14 | 25 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 110 | 147 | 134 |
Figure S468. Get High-res Image Gene #56: 'del_10q23.31' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D56V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S469. Gene #56: 'del_10q23.31' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 24(10Q23.31) MUTATED | 12 | 11 | 21 | 70 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 79 | 126 | 167 | 19 |
Figure S469. Get High-res Image Gene #56: 'del_10q23.31' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D56V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S470. Gene #57: 'del_10q26.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 25(10Q26.3) MUTATED | 136 | 75 | 148 | 91 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 11 | 21 | 4 | 22 |
Figure S470. Get High-res Image Gene #57: 'del_10q26.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D57V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
Table S471. Gene #57: 'del_10q26.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 25(10Q26.3) MUTATED | 132 | 77 | 97 | 144 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 16 | 25 | 3 | 14 |
Figure S471. Get High-res Image Gene #57: 'del_10q26.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D57V2.png)
P value = 0.0425 (Fisher's exact test), Q value = 0.072
Table S472. Gene #57: 'del_10q26.3' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 25(10Q26.3) MUTATED | 146 | 162 | 71 | 107 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 10 | 21 | 16 | 13 |
Figure S472. Get High-res Image Gene #57: 'del_10q26.3' versus Molecular Subtype #3: 'MIR_CNMF'
![](D57V3.png)
P value = 0.00155 (Fisher's exact test), Q value = 0.0038
Table S473. Gene #57: 'del_10q26.3' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 25(10Q26.3) MUTATED | 252 | 109 | 125 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 41 | 15 | 4 |
Figure S473. Get High-res Image Gene #57: 'del_10q26.3' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D57V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S474. Gene #57: 'del_10q26.3' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 25(10Q26.3) MUTATED | 513 | 137 | 15 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 20 | 405 | 0 |
Figure S474. Get High-res Image Gene #57: 'del_10q26.3' versus Molecular Subtype #5: 'CN_CNMF'
![](D57V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S475. Gene #57: 'del_10q26.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 25(10Q26.3) MUTATED | 175 | 71 | 23 | 9 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 9 | 166 | 41 | 156 |
Figure S475. Get High-res Image Gene #57: 'del_10q26.3' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D57V6.png)
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
Table S476. Gene #57: 'del_10q26.3' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 25(10Q26.3) MUTATED | 117 | 71 | 129 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 107 | 133 | 89 |
Figure S476. Get High-res Image Gene #57: 'del_10q26.3' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D57V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S477. Gene #57: 'del_10q26.3' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 25(10Q26.3) MUTATED | 133 | 133 | 51 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 101 | 121 | 107 |
Figure S477. Get High-res Image Gene #57: 'del_10q26.3' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D57V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S478. Gene #57: 'del_10q26.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 25(10Q26.3) MUTATED | 201 | 46 | 37 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 32 | 189 | 155 |
Figure S478. Get High-res Image Gene #57: 'del_10q26.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D57V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S479. Gene #57: 'del_10q26.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 25(10Q26.3) MUTATED | 185 | 59 | 40 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 18 | 131 | 227 |
Figure S479. Get High-res Image Gene #57: 'del_10q26.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D57V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S480. Gene #57: 'del_10q26.3' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 25(10Q26.3) MUTATED | 55 | 46 | 38 | 11 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 82 | 61 | 145 | 71 |
Figure S480. Get High-res Image Gene #57: 'del_10q26.3' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D57V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S481. Gene #57: 'del_10q26.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 25(10Q26.3) MUTATED | 49 | 28 | 73 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 173 | 156 | 30 |
Figure S481. Get High-res Image Gene #57: 'del_10q26.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D57V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S482. Gene #57: 'del_10q26.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 25(10Q26.3) MUTATED | 93 | 22 | 35 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 92 | 139 | 124 |
Figure S482. Get High-res Image Gene #57: 'del_10q26.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D57V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S483. Gene #57: 'del_10q26.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 25(10Q26.3) MUTATED | 28 | 18 | 32 | 72 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 63 | 119 | 156 | 17 |
Figure S483. Get High-res Image Gene #57: 'del_10q26.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D57V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S484. Gene #58: 'del_11p15.5' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 26(11P15.5) MUTATED | 32 | 42 | 13 | 31 |
DEL PEAK 26(11P15.5) WILD-TYPE | 115 | 54 | 139 | 82 |
Figure S484. Get High-res Image Gene #58: 'del_11p15.5' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D58V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S485. Gene #58: 'del_11p15.5' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 26(11P15.5) MUTATED | 30 | 48 | 9 | 31 |
DEL PEAK 26(11P15.5) WILD-TYPE | 118 | 54 | 91 | 127 |
Figure S485. Get High-res Image Gene #58: 'del_11p15.5' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D58V2.png)
P value = 0.00161 (Fisher's exact test), Q value = 0.0039
Table S486. Gene #58: 'del_11p15.5' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 26(11P15.5) MUTATED | 84 | 23 | 18 |
DEL PEAK 26(11P15.5) WILD-TYPE | 209 | 101 | 111 |
Figure S486. Get High-res Image Gene #58: 'del_11p15.5' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D58V4.png)
P value = 0.00077 (Fisher's exact test), Q value = 0.0021
Table S487. Gene #58: 'del_11p15.5' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 26(11P15.5) MUTATED | 96 | 130 | 8 |
DEL PEAK 26(11P15.5) WILD-TYPE | 437 | 412 | 7 |
Figure S487. Get High-res Image Gene #58: 'del_11p15.5' versus Molecular Subtype #5: 'CN_CNMF'
![](D58V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S488. Gene #58: 'del_11p15.5' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 26(11P15.5) MUTATED | 23 | 93 | 7 | 1 |
DEL PEAK 26(11P15.5) WILD-TYPE | 161 | 144 | 57 | 164 |
Figure S488. Get High-res Image Gene #58: 'del_11p15.5' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D58V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S489. Gene #58: 'del_11p15.5' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 26(11P15.5) MUTATED | 34 | 72 | 32 |
DEL PEAK 26(11P15.5) WILD-TYPE | 169 | 118 | 235 |
Figure S489. Get High-res Image Gene #58: 'del_11p15.5' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D58V10.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00017
Table S490. Gene #58: 'del_11p15.5' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 26(11P15.5) MUTATED | 24 | 39 | 34 | 8 |
DEL PEAK 26(11P15.5) WILD-TYPE | 113 | 68 | 149 | 74 |
Figure S490. Get High-res Image Gene #58: 'del_11p15.5' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D58V11.png)
P value = 0.0123 (Fisher's exact test), Q value = 0.024
Table S491. Gene #58: 'del_11p15.5' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 26(11P15.5) MUTATED | 43 | 30 | 32 |
DEL PEAK 26(11P15.5) WILD-TYPE | 179 | 154 | 71 |
Figure S491. Get High-res Image Gene #58: 'del_11p15.5' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D58V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S492. Gene #59: 'del_11p15.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 27(11P15.1) MUTATED | 28 | 35 | 8 | 23 |
DEL PEAK 27(11P15.1) WILD-TYPE | 119 | 61 | 144 | 90 |
Figure S492. Get High-res Image Gene #59: 'del_11p15.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D59V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S493. Gene #59: 'del_11p15.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 27(11P15.1) MUTATED | 27 | 37 | 4 | 26 |
DEL PEAK 27(11P15.1) WILD-TYPE | 121 | 65 | 96 | 132 |
Figure S493. Get High-res Image Gene #59: 'del_11p15.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D59V2.png)
P value = 0.00262 (Fisher's exact test), Q value = 0.0061
Table S494. Gene #59: 'del_11p15.1' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 27(11P15.1) MUTATED | 82 | 86 | 8 |
DEL PEAK 27(11P15.1) WILD-TYPE | 451 | 456 | 7 |
Figure S494. Get High-res Image Gene #59: 'del_11p15.1' versus Molecular Subtype #5: 'CN_CNMF'
![](D59V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S495. Gene #59: 'del_11p15.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 27(11P15.1) MUTATED | 21 | 58 | 8 | 1 |
DEL PEAK 27(11P15.1) WILD-TYPE | 163 | 179 | 56 | 164 |
Figure S495. Get High-res Image Gene #59: 'del_11p15.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D59V6.png)
P value = 0.0427 (Fisher's exact test), Q value = 0.072
Table S496. Gene #59: 'del_11p15.1' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 27(11P15.1) MUTATED | 24 | 26 | 41 |
DEL PEAK 27(11P15.1) WILD-TYPE | 200 | 178 | 177 |
Figure S496. Get High-res Image Gene #59: 'del_11p15.1' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D59V7.png)
P value = 0.00111 (Fisher's exact test), Q value = 0.0028
Table S497. Gene #59: 'del_11p15.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 27(11P15.1) MUTATED | 51 | 31 | 18 |
DEL PEAK 27(11P15.1) WILD-TYPE | 182 | 204 | 174 |
Figure S497. Get High-res Image Gene #59: 'del_11p15.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D59V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S498. Gene #59: 'del_11p15.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 27(11P15.1) MUTATED | 34 | 49 | 17 |
DEL PEAK 27(11P15.1) WILD-TYPE | 169 | 141 | 250 |
Figure S498. Get High-res Image Gene #59: 'del_11p15.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D59V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
Table S499. Gene #59: 'del_11p15.1' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 27(11P15.1) MUTATED | 16 | 32 | 19 | 5 |
DEL PEAK 27(11P15.1) WILD-TYPE | 121 | 75 | 164 | 77 |
Figure S499. Get High-res Image Gene #59: 'del_11p15.1' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D59V11.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00032
Table S500. Gene #59: 'del_11p15.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 27(11P15.1) MUTATED | 27 | 16 | 29 |
DEL PEAK 27(11P15.1) WILD-TYPE | 195 | 168 | 74 |
Figure S500. Get High-res Image Gene #59: 'del_11p15.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D59V12.png)
P value = 0.0335 (Fisher's exact test), Q value = 0.058
Table S501. Gene #59: 'del_11p15.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 27(11P15.1) MUTATED | 13 | 18 | 19 | 21 |
DEL PEAK 27(11P15.1) WILD-TYPE | 78 | 119 | 169 | 68 |
Figure S501. Get High-res Image Gene #59: 'del_11p15.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D59V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S502. Gene #60: 'del_11p11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 28(11P11.2) MUTATED | 27 | 35 | 10 | 23 |
DEL PEAK 28(11P11.2) WILD-TYPE | 120 | 61 | 142 | 90 |
Figure S502. Get High-res Image Gene #60: 'del_11p11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D60V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S503. Gene #60: 'del_11p11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 28(11P11.2) MUTATED | 27 | 36 | 5 | 27 |
DEL PEAK 28(11P11.2) WILD-TYPE | 121 | 66 | 95 | 131 |
Figure S503. Get High-res Image Gene #60: 'del_11p11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D60V2.png)
P value = 0.0191 (Fisher's exact test), Q value = 0.036
Table S504. Gene #60: 'del_11p11.2' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 28(11P11.2) MUTATED | 65 | 22 | 14 |
DEL PEAK 28(11P11.2) WILD-TYPE | 228 | 102 | 115 |
Figure S504. Get High-res Image Gene #60: 'del_11p11.2' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D60V4.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00037
Table S505. Gene #60: 'del_11p11.2' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 28(11P11.2) MUTATED | 87 | 64 | 8 |
DEL PEAK 28(11P11.2) WILD-TYPE | 446 | 478 | 7 |
Figure S505. Get High-res Image Gene #60: 'del_11p11.2' versus Molecular Subtype #5: 'CN_CNMF'
![](D60V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S506. Gene #60: 'del_11p11.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 28(11P11.2) MUTATED | 24 | 39 | 7 | 0 |
DEL PEAK 28(11P11.2) WILD-TYPE | 160 | 198 | 57 | 165 |
Figure S506. Get High-res Image Gene #60: 'del_11p11.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D60V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S507. Gene #60: 'del_11p11.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 28(11P11.2) MUTATED | 48 | 20 | 12 |
DEL PEAK 28(11P11.2) WILD-TYPE | 185 | 215 | 180 |
Figure S507. Get High-res Image Gene #60: 'del_11p11.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D60V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S508. Gene #60: 'del_11p11.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 28(11P11.2) MUTATED | 34 | 35 | 11 |
DEL PEAK 28(11P11.2) WILD-TYPE | 169 | 155 | 256 |
Figure S508. Get High-res Image Gene #60: 'del_11p11.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D60V10.png)
P value = 0.00046 (Fisher's exact test), Q value = 0.0013
Table S509. Gene #60: 'del_11p11.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 28(11P11.2) MUTATED | 11 | 24 | 15 | 4 |
DEL PEAK 28(11P11.2) WILD-TYPE | 126 | 83 | 168 | 78 |
Figure S509. Get High-res Image Gene #60: 'del_11p11.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D60V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S510. Gene #60: 'del_11p11.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 28(11P11.2) MUTATED | 18 | 10 | 26 |
DEL PEAK 28(11P11.2) WILD-TYPE | 204 | 174 | 77 |
Figure S510. Get High-res Image Gene #60: 'del_11p11.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D60V12.png)
P value = 0.00043 (Fisher's exact test), Q value = 0.0012
Table S511. Gene #60: 'del_11p11.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 28(11P11.2) MUTATED | 8 | 13 | 11 | 21 |
DEL PEAK 28(11P11.2) WILD-TYPE | 83 | 124 | 177 | 68 |
Figure S511. Get High-res Image Gene #60: 'del_11p11.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D60V14.png)
P value = 0.0493 (Fisher's exact test), Q value = 0.082
Table S512. Gene #61: 'del_12p13.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 29(12P13.1) MUTATED | 18 | 17 | 11 | 18 |
DEL PEAK 29(12P13.1) WILD-TYPE | 129 | 79 | 141 | 95 |
Figure S512. Get High-res Image Gene #61: 'del_12p13.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D61V1.png)
P value = 0.0138 (Fisher's exact test), Q value = 0.026
Table S513. Gene #61: 'del_12p13.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 29(12P13.1) MUTATED | 17 | 20 | 5 | 22 |
DEL PEAK 29(12P13.1) WILD-TYPE | 131 | 82 | 95 | 136 |
Figure S513. Get High-res Image Gene #61: 'del_12p13.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D61V2.png)
P value = 0.00721 (Fisher's exact test), Q value = 0.015
Table S514. Gene #61: 'del_12p13.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 29(12P13.1) MUTATED | 16 | 29 | 4 | 5 |
DEL PEAK 29(12P13.1) WILD-TYPE | 168 | 208 | 60 | 160 |
Figure S514. Get High-res Image Gene #61: 'del_12p13.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D61V6.png)
P value = 0.00182 (Fisher's exact test), Q value = 0.0044
Table S515. Gene #61: 'del_12p13.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 29(12P13.1) MUTATED | 18 | 25 | 11 |
DEL PEAK 29(12P13.1) WILD-TYPE | 185 | 165 | 256 |
Figure S515. Get High-res Image Gene #61: 'del_12p13.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D61V10.png)
P value = 0.0457 (Fisher's exact test), Q value = 0.076
Table S516. Gene #61: 'del_12p13.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 29(12P13.1) MUTATED | 13 | 11 | 14 |
DEL PEAK 29(12P13.1) WILD-TYPE | 209 | 173 | 89 |
Figure S516. Get High-res Image Gene #61: 'del_12p13.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D61V12.png)
P value = 0.0134 (Fisher's exact test), Q value = 0.026
Table S517. Gene #62: 'del_12q12' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 30(12Q12) MUTATED | 18 | 17 | 11 | 22 |
DEL PEAK 30(12Q12) WILD-TYPE | 129 | 79 | 141 | 91 |
Figure S517. Get High-res Image Gene #62: 'del_12q12' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D62V1.png)
P value = 0.00057 (Fisher's exact test), Q value = 0.0016
Table S518. Gene #62: 'del_12q12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 30(12Q12) MUTATED | 19 | 26 | 6 | 17 |
DEL PEAK 30(12Q12) WILD-TYPE | 129 | 76 | 94 | 141 |
Figure S518. Get High-res Image Gene #62: 'del_12q12' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D62V2.png)
P value = 0.00515 (Fisher's exact test), Q value = 0.011
Table S519. Gene #62: 'del_12q12' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 30(12Q12) MUTATED | 57 | 85 | 5 |
DEL PEAK 30(12Q12) WILD-TYPE | 476 | 457 | 10 |
Figure S519. Get High-res Image Gene #62: 'del_12q12' versus Molecular Subtype #5: 'CN_CNMF'
![](D62V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S520. Gene #62: 'del_12q12' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 30(12Q12) MUTATED | 17 | 59 | 5 | 7 |
DEL PEAK 30(12Q12) WILD-TYPE | 167 | 178 | 59 | 158 |
Figure S520. Get High-res Image Gene #62: 'del_12q12' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D62V6.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00032
Table S521. Gene #62: 'del_12q12' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 30(12Q12) MUTATED | 17 | 42 | 25 |
DEL PEAK 30(12Q12) WILD-TYPE | 186 | 148 | 242 |
Figure S521. Get High-res Image Gene #62: 'del_12q12' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D62V10.png)
P value = 0.00707 (Fisher's exact test), Q value = 0.015
Table S522. Gene #62: 'del_12q12' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 30(12Q12) MUTATED | 13 | 26 | 23 | 8 |
DEL PEAK 30(12Q12) WILD-TYPE | 124 | 81 | 160 | 74 |
Figure S522. Get High-res Image Gene #62: 'del_12q12' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D62V11.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00051
Table S523. Gene #63: 'del_12q15' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 31(12Q15) MUTATED | 21 | 21 | 7 | 20 |
DEL PEAK 31(12Q15) WILD-TYPE | 126 | 75 | 145 | 93 |
Figure S523. Get High-res Image Gene #63: 'del_12q15' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D63V1.png)
P value = 0.00212 (Fisher's exact test), Q value = 0.0051
Table S524. Gene #63: 'del_12q15' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 31(12Q15) MUTATED | 20 | 22 | 4 | 23 |
DEL PEAK 31(12Q15) WILD-TYPE | 128 | 80 | 96 | 135 |
Figure S524. Get High-res Image Gene #63: 'del_12q15' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D63V2.png)
P value = 0.0414 (Fisher's exact test), Q value = 0.071
Table S525. Gene #63: 'del_12q15' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 31(12Q15) MUTATED | 62 | 75 | 5 |
DEL PEAK 31(12Q15) WILD-TYPE | 471 | 467 | 10 |
Figure S525. Get High-res Image Gene #63: 'del_12q15' versus Molecular Subtype #5: 'CN_CNMF'
![](D63V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S526. Gene #63: 'del_12q15' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 31(12Q15) MUTATED | 16 | 57 | 4 | 5 |
DEL PEAK 31(12Q15) WILD-TYPE | 168 | 180 | 60 | 160 |
Figure S526. Get High-res Image Gene #63: 'del_12q15' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D63V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S527. Gene #63: 'del_12q15' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 31(12Q15) MUTATED | 18 | 42 | 20 |
DEL PEAK 31(12Q15) WILD-TYPE | 185 | 148 | 247 |
Figure S527. Get High-res Image Gene #63: 'del_12q15' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D63V10.png)
P value = 0.00107 (Fisher's exact test), Q value = 0.0028
Table S528. Gene #63: 'del_12q15' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 31(12Q15) MUTATED | 11 | 26 | 20 | 6 |
DEL PEAK 31(12Q15) WILD-TYPE | 126 | 81 | 163 | 76 |
Figure S528. Get High-res Image Gene #63: 'del_12q15' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D63V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S529. Gene #64: 'del_13q14.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 32(13Q14.2) MUTATED | 81 | 45 | 36 | 53 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 66 | 51 | 116 | 60 |
Figure S529. Get High-res Image Gene #64: 'del_13q14.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D64V1.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00014
Table S530. Gene #64: 'del_13q14.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 32(13Q14.2) MUTATED | 68 | 50 | 21 | 76 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 80 | 52 | 79 | 82 |
Figure S530. Get High-res Image Gene #64: 'del_13q14.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D64V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S531. Gene #64: 'del_13q14.2' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 32(13Q14.2) MUTATED | 214 | 156 | 13 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 319 | 386 | 2 |
Figure S531. Get High-res Image Gene #64: 'del_13q14.2' versus Molecular Subtype #5: 'CN_CNMF'
![](D64V5.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00051
Table S532. Gene #64: 'del_13q14.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 32(13Q14.2) MUTATED | 62 | 84 | 16 | 28 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 122 | 153 | 48 | 137 |
Figure S532. Get High-res Image Gene #64: 'del_13q14.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D64V6.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00017
Table S533. Gene #64: 'del_13q14.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 32(13Q14.2) MUTATED | 94 | 67 | 40 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 139 | 168 | 152 |
Figure S533. Get High-res Image Gene #64: 'del_13q14.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D64V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S534. Gene #64: 'del_13q14.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 32(13Q14.2) MUTATED | 73 | 74 | 54 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 130 | 116 | 213 |
Figure S534. Get High-res Image Gene #64: 'del_13q14.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D64V10.png)
P value = 0.0175 (Fisher's exact test), Q value = 0.033
Table S535. Gene #64: 'del_13q14.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 32(13Q14.2) MUTATED | 38 | 42 | 40 | 21 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 99 | 65 | 143 | 61 |
Figure S535. Get High-res Image Gene #64: 'del_13q14.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D64V11.png)
P value = 0.00589 (Fisher's exact test), Q value = 0.012
Table S536. Gene #64: 'del_13q14.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 32(13Q14.2) MUTATED | 66 | 37 | 38 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 156 | 147 | 65 |
Figure S536. Get High-res Image Gene #64: 'del_13q14.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D64V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S537. Gene #65: 'del_13q22.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 33(13Q22.1) MUTATED | 81 | 40 | 34 | 50 |
DEL PEAK 33(13Q22.1) WILD-TYPE | 66 | 56 | 118 | 63 |
Figure S537. Get High-res Image Gene #65: 'del_13q22.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D65V1.png)
P value = 0.00015 (Fisher's exact test), Q value = 0.00046
Table S538. Gene #65: 'del_13q22.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 33(13Q22.1) MUTATED | 68 | 45 | 21 | 71 |
DEL PEAK 33(13Q22.1) WILD-TYPE | 80 | 57 | 79 | 87 |
Figure S538. Get High-res Image Gene #65: 'del_13q22.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D65V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S539. Gene #65: 'del_13q22.1' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 33(13Q22.1) MUTATED | 206 | 149 | 12 |
DEL PEAK 33(13Q22.1) WILD-TYPE | 327 | 393 | 3 |
Figure S539. Get High-res Image Gene #65: 'del_13q22.1' versus Molecular Subtype #5: 'CN_CNMF'
![](D65V5.png)
P value = 0.00177 (Fisher's exact test), Q value = 0.0043
Table S540. Gene #65: 'del_13q22.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 33(13Q22.1) MUTATED | 62 | 76 | 15 | 29 |
DEL PEAK 33(13Q22.1) WILD-TYPE | 122 | 161 | 49 | 136 |
Figure S540. Get High-res Image Gene #65: 'del_13q22.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D65V6.png)
P value = 0.00013 (Fisher's exact test), Q value = 4e-04
Table S541. Gene #65: 'del_13q22.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 33(13Q22.1) MUTATED | 89 | 65 | 37 |
DEL PEAK 33(13Q22.1) WILD-TYPE | 144 | 170 | 155 |
Figure S541. Get High-res Image Gene #65: 'del_13q22.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D65V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
Table S542. Gene #65: 'del_13q22.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 33(13Q22.1) MUTATED | 71 | 69 | 51 |
DEL PEAK 33(13Q22.1) WILD-TYPE | 132 | 121 | 216 |
Figure S542. Get High-res Image Gene #65: 'del_13q22.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D65V10.png)
P value = 0.0159 (Fisher's exact test), Q value = 0.03
Table S543. Gene #65: 'del_13q22.1' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 33(13Q22.1) MUTATED | 39 | 40 | 37 | 20 |
DEL PEAK 33(13Q22.1) WILD-TYPE | 98 | 67 | 146 | 62 |
Figure S543. Get High-res Image Gene #65: 'del_13q22.1' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D65V11.png)
P value = 0.00178 (Fisher's exact test), Q value = 0.0043
Table S544. Gene #65: 'del_13q22.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 33(13Q22.1) MUTATED | 64 | 34 | 38 |
DEL PEAK 33(13Q22.1) WILD-TYPE | 158 | 150 | 65 |
Figure S544. Get High-res Image Gene #65: 'del_13q22.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D65V12.png)
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
Table S545. Gene #66: 'del_14q13.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 34(14Q13.1) MUTATED | 54 | 39 | 25 | 43 |
DEL PEAK 34(14Q13.1) WILD-TYPE | 93 | 57 | 127 | 70 |
Figure S545. Get High-res Image Gene #66: 'del_14q13.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D66V1.png)
P value = 0.00015 (Fisher's exact test), Q value = 0.00046
Table S546. Gene #66: 'del_14q13.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 34(14Q13.1) MUTATED | 49 | 42 | 15 | 55 |
DEL PEAK 34(14Q13.1) WILD-TYPE | 99 | 60 | 85 | 103 |
Figure S546. Get High-res Image Gene #66: 'del_14q13.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D66V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S547. Gene #66: 'del_14q13.1' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 34(14Q13.1) MUTATED | 172 | 66 | 8 |
DEL PEAK 34(14Q13.1) WILD-TYPE | 361 | 476 | 7 |
Figure S547. Get High-res Image Gene #66: 'del_14q13.1' versus Molecular Subtype #5: 'CN_CNMF'
![](D66V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S548. Gene #66: 'del_14q13.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 34(14Q13.1) MUTATED | 63 | 21 | 14 | 17 |
DEL PEAK 34(14Q13.1) WILD-TYPE | 121 | 216 | 50 | 148 |
Figure S548. Get High-res Image Gene #66: 'del_14q13.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D66V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S549. Gene #66: 'del_14q13.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 34(14Q13.1) MUTATED | 85 | 18 | 24 |
DEL PEAK 34(14Q13.1) WILD-TYPE | 148 | 217 | 168 |
Figure S549. Get High-res Image Gene #66: 'del_14q13.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D66V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S550. Gene #66: 'del_14q13.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 34(14Q13.1) MUTATED | 78 | 21 | 28 |
DEL PEAK 34(14Q13.1) WILD-TYPE | 125 | 169 | 239 |
Figure S550. Get High-res Image Gene #66: 'del_14q13.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D66V10.png)
P value = 0.00016 (Fisher's exact test), Q value = 0.00048
Table S551. Gene #66: 'del_14q13.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 34(14Q13.1) MUTATED | 22 | 18 | 27 |
DEL PEAK 34(14Q13.1) WILD-TYPE | 200 | 166 | 76 |
Figure S551. Get High-res Image Gene #66: 'del_14q13.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D66V12.png)
P value = 0.00285 (Fisher's exact test), Q value = 0.0066
Table S552. Gene #66: 'del_14q13.1' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 34(14Q13.1) MUTATED | 37 | 13 | 17 |
DEL PEAK 34(14Q13.1) WILD-TYPE | 148 | 148 | 142 |
Figure S552. Get High-res Image Gene #66: 'del_14q13.1' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D66V13.png)
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
Table S553. Gene #66: 'del_14q13.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 34(14Q13.1) MUTATED | 8 | 13 | 18 | 28 |
DEL PEAK 34(14Q13.1) WILD-TYPE | 83 | 124 | 170 | 61 |
Figure S553. Get High-res Image Gene #66: 'del_14q13.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D66V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S554. Gene #67: 'del_14q24.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 35(14Q24.2) MUTATED | 51 | 43 | 22 | 45 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 96 | 53 | 130 | 68 |
Figure S554. Get High-res Image Gene #67: 'del_14q24.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D67V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S555. Gene #67: 'del_14q24.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 35(14Q24.2) MUTATED | 48 | 46 | 14 | 53 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 100 | 56 | 86 | 105 |
Figure S555. Get High-res Image Gene #67: 'del_14q24.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D67V2.png)
P value = 0.00576 (Fisher's exact test), Q value = 0.012
Table S556. Gene #67: 'del_14q24.2' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 35(14Q24.2) MUTATED | 157 | 127 | 8 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 376 | 415 | 7 |
Figure S556. Get High-res Image Gene #67: 'del_14q24.2' versus Molecular Subtype #5: 'CN_CNMF'
![](D67V5.png)
P value = 0.0252 (Fisher's exact test), Q value = 0.045
Table S557. Gene #67: 'del_14q24.2' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 35(14Q24.2) MUTATED | 60 | 39 | 66 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 164 | 165 | 152 |
Figure S557. Get High-res Image Gene #67: 'del_14q24.2' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D67V7.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00029
Table S558. Gene #67: 'del_14q24.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 35(14Q24.2) MUTATED | 85 | 51 | 37 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 148 | 184 | 155 |
Figure S558. Get High-res Image Gene #67: 'del_14q24.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D67V9.png)
P value = 0.00016 (Fisher's exact test), Q value = 0.00048
Table S559. Gene #67: 'del_14q24.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 35(14Q24.2) MUTATED | 73 | 50 | 50 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 130 | 140 | 217 |
Figure S559. Get High-res Image Gene #67: 'del_14q24.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D67V10.png)
P value = 4e-04 (Fisher's exact test), Q value = 0.0011
Table S560. Gene #67: 'del_14q24.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 35(14Q24.2) MUTATED | 50 | 20 | 32 | 16 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 87 | 87 | 151 | 66 |
Figure S560. Get High-res Image Gene #67: 'del_14q24.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D67V11.png)
P value = 0.00511 (Fisher's exact test), Q value = 0.011
Table S561. Gene #67: 'del_14q24.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 35(14Q24.2) MUTATED | 52 | 31 | 35 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 170 | 153 | 68 |
Figure S561. Get High-res Image Gene #67: 'del_14q24.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D67V12.png)
P value = 0.0042 (Fisher's exact test), Q value = 0.0093
Table S562. Gene #67: 'del_14q24.2' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 35(14Q24.2) MUTATED | 56 | 38 | 24 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 129 | 123 | 135 |
Figure S562. Get High-res Image Gene #67: 'del_14q24.2' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D67V13.png)
P value = 0.00143 (Fisher's exact test), Q value = 0.0035
Table S563. Gene #67: 'del_14q24.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 35(14Q24.2) MUTATED | 25 | 32 | 29 | 32 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 66 | 105 | 159 | 57 |
Figure S563. Get High-res Image Gene #67: 'del_14q24.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D67V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S564. Gene #68: 'del_14q31.3' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 36(14Q31.3) MUTATED | 51 | 39 | 16 | 41 |
DEL PEAK 36(14Q31.3) WILD-TYPE | 96 | 57 | 136 | 72 |
Figure S564. Get High-res Image Gene #68: 'del_14q31.3' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D68V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S565. Gene #68: 'del_14q31.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 36(14Q31.3) MUTATED | 47 | 41 | 10 | 49 |
DEL PEAK 36(14Q31.3) WILD-TYPE | 101 | 61 | 90 | 109 |
Figure S565. Get High-res Image Gene #68: 'del_14q31.3' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D68V2.png)
P value = 0.00553 (Fisher's exact test), Q value = 0.012
Table S566. Gene #68: 'del_14q31.3' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 36(14Q31.3) MUTATED | 147 | 120 | 8 |
DEL PEAK 36(14Q31.3) WILD-TYPE | 386 | 422 | 7 |
Figure S566. Get High-res Image Gene #68: 'del_14q31.3' versus Molecular Subtype #5: 'CN_CNMF'
![](D68V5.png)
P value = 0.0334 (Fisher's exact test), Q value = 0.058
Table S567. Gene #68: 'del_14q31.3' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 36(14Q31.3) MUTATED | 57 | 38 | 64 |
DEL PEAK 36(14Q31.3) WILD-TYPE | 167 | 166 | 154 |
Figure S567. Get High-res Image Gene #68: 'del_14q31.3' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D68V7.png)
P value = 0.00031 (Fisher's exact test), Q value = 0.00089
Table S568. Gene #68: 'del_14q31.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 36(14Q31.3) MUTATED | 80 | 48 | 37 |
DEL PEAK 36(14Q31.3) WILD-TYPE | 153 | 187 | 155 |
Figure S568. Get High-res Image Gene #68: 'del_14q31.3' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D68V9.png)
P value = 0.00033 (Fisher's exact test), Q value = 0.00094
Table S569. Gene #68: 'del_14q31.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 36(14Q31.3) MUTATED | 69 | 48 | 48 |
DEL PEAK 36(14Q31.3) WILD-TYPE | 134 | 142 | 219 |
Figure S569. Get High-res Image Gene #68: 'del_14q31.3' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D68V10.png)
P value = 0.00097 (Fisher's exact test), Q value = 0.0025
Table S570. Gene #68: 'del_14q31.3' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 36(14Q31.3) MUTATED | 48 | 19 | 32 | 15 |
DEL PEAK 36(14Q31.3) WILD-TYPE | 89 | 88 | 151 | 67 |
Figure S570. Get High-res Image Gene #68: 'del_14q31.3' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D68V11.png)
P value = 0.00794 (Fisher's exact test), Q value = 0.016
Table S571. Gene #68: 'del_14q31.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 36(14Q31.3) MUTATED | 49 | 31 | 34 |
DEL PEAK 36(14Q31.3) WILD-TYPE | 173 | 153 | 69 |
Figure S571. Get High-res Image Gene #68: 'del_14q31.3' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D68V12.png)
P value = 0.00716 (Fisher's exact test), Q value = 0.015
Table S572. Gene #68: 'del_14q31.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 36(14Q31.3) MUTATED | 54 | 36 | 24 |
DEL PEAK 36(14Q31.3) WILD-TYPE | 131 | 125 | 135 |
Figure S572. Get High-res Image Gene #68: 'del_14q31.3' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D68V13.png)
P value = 0.00344 (Fisher's exact test), Q value = 0.0078
Table S573. Gene #68: 'del_14q31.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 36(14Q31.3) MUTATED | 24 | 30 | 29 | 31 |
DEL PEAK 36(14Q31.3) WILD-TYPE | 67 | 107 | 159 | 58 |
Figure S573. Get High-res Image Gene #68: 'del_14q31.3' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D68V14.png)
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
Table S574. Gene #69: 'del_15q14' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 37(15Q14) MUTATED | 35 | 37 | 23 | 42 |
DEL PEAK 37(15Q14) WILD-TYPE | 112 | 59 | 129 | 71 |
Figure S574. Get High-res Image Gene #69: 'del_15q14' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D69V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S575. Gene #69: 'del_15q14' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 37(15Q14) MUTATED | 33 | 48 | 12 | 44 |
DEL PEAK 37(15Q14) WILD-TYPE | 115 | 54 | 88 | 114 |
Figure S575. Get High-res Image Gene #69: 'del_15q14' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D69V2.png)
P value = 0.00071 (Fisher's exact test), Q value = 0.0019
Table S576. Gene #69: 'del_15q14' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 37(15Q14) MUTATED | 34 | 66 | 22 | 19 |
DEL PEAK 37(15Q14) WILD-TYPE | 122 | 117 | 65 | 101 |
Figure S576. Get High-res Image Gene #69: 'del_15q14' versus Molecular Subtype #3: 'MIR_CNMF'
![](D69V3.png)
P value = 0.00015 (Fisher's exact test), Q value = 0.00046
Table S577. Gene #69: 'del_15q14' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 37(15Q14) MUTATED | 94 | 15 | 32 |
DEL PEAK 37(15Q14) WILD-TYPE | 199 | 109 | 97 |
Figure S577. Get High-res Image Gene #69: 'del_15q14' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D69V4.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00023
Table S578. Gene #69: 'del_15q14' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 37(15Q14) MUTATED | 130 | 79 | 5 |
DEL PEAK 37(15Q14) WILD-TYPE | 403 | 463 | 10 |
Figure S578. Get High-res Image Gene #69: 'del_15q14' versus Molecular Subtype #5: 'CN_CNMF'
![](D69V5.png)
P value = 0.00192 (Fisher's exact test), Q value = 0.0046
Table S579. Gene #69: 'del_15q14' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 37(15Q14) MUTATED | 37 | 24 | 3 | 28 |
DEL PEAK 37(15Q14) WILD-TYPE | 147 | 213 | 61 | 137 |
Figure S579. Get High-res Image Gene #69: 'del_15q14' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D69V6.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00014
Table S580. Gene #69: 'del_15q14' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 37(15Q14) MUTATED | 58 | 29 | 19 |
DEL PEAK 37(15Q14) WILD-TYPE | 175 | 206 | 173 |
Figure S580. Get High-res Image Gene #69: 'del_15q14' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D69V9.png)
P value = 0.00046 (Fisher's exact test), Q value = 0.0013
Table S581. Gene #69: 'del_15q14' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 37(15Q14) MUTATED | 50 | 21 | 35 |
DEL PEAK 37(15Q14) WILD-TYPE | 153 | 169 | 232 |
Figure S581. Get High-res Image Gene #69: 'del_15q14' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D69V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S582. Gene #70: 'del_16p12.2' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 38(16P12.2) MUTATED | 87 | 22 | 5 |
DEL PEAK 38(16P12.2) WILD-TYPE | 446 | 520 | 10 |
Figure S582. Get High-res Image Gene #70: 'del_16p12.2' versus Molecular Subtype #5: 'CN_CNMF'
![](D70V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S583. Gene #70: 'del_16p12.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 38(16P12.2) MUTATED | 28 | 12 | 3 | 2 |
DEL PEAK 38(16P12.2) WILD-TYPE | 156 | 225 | 61 | 163 |
Figure S583. Get High-res Image Gene #70: 'del_16p12.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D70V6.png)
P value = 0.0159 (Fisher's exact test), Q value = 0.03
Table S584. Gene #70: 'del_16p12.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 38(16P12.2) MUTATED | 31 | 20 | 8 |
DEL PEAK 38(16P12.2) WILD-TYPE | 203 | 234 | 150 |
Figure S584. Get High-res Image Gene #70: 'del_16p12.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D70V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S585. Gene #70: 'del_16p12.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 38(16P12.2) MUTATED | 36 | 8 | 7 |
DEL PEAK 38(16P12.2) WILD-TYPE | 197 | 227 | 185 |
Figure S585. Get High-res Image Gene #70: 'del_16p12.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D70V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S586. Gene #70: 'del_16p12.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 38(16P12.2) MUTATED | 32 | 8 | 11 |
DEL PEAK 38(16P12.2) WILD-TYPE | 171 | 182 | 256 |
Figure S586. Get High-res Image Gene #70: 'del_16p12.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D70V10.png)
P value = 0.0217 (Fisher's exact test), Q value = 0.04
Table S587. Gene #70: 'del_16p12.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 38(16P12.2) MUTATED | 7 | 5 | 10 |
DEL PEAK 38(16P12.2) WILD-TYPE | 215 | 179 | 93 |
Figure S587. Get High-res Image Gene #70: 'del_16p12.2' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D70V12.png)
P value = 0.00549 (Fisher's exact test), Q value = 0.012
Table S588. Gene #70: 'del_16p12.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 38(16P12.2) MUTATED | 3 | 6 | 3 | 10 |
DEL PEAK 38(16P12.2) WILD-TYPE | 88 | 131 | 185 | 79 |
Figure S588. Get High-res Image Gene #70: 'del_16p12.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D70V14.png)
P value = 0.0148 (Fisher's exact test), Q value = 0.028
Table S589. Gene #71: 'del_16q23.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 39(16Q23.1) MUTATED | 31 | 24 | 16 | 19 |
DEL PEAK 39(16Q23.1) WILD-TYPE | 116 | 72 | 136 | 94 |
Figure S589. Get High-res Image Gene #71: 'del_16q23.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D71V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S590. Gene #71: 'del_16q23.1' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 39(16Q23.1) MUTATED | 92 | 31 | 6 |
DEL PEAK 39(16Q23.1) WILD-TYPE | 441 | 511 | 9 |
Figure S590. Get High-res Image Gene #71: 'del_16q23.1' versus Molecular Subtype #5: 'CN_CNMF'
![](D71V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S591. Gene #71: 'del_16q23.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 39(16Q23.1) MUTATED | 33 | 16 | 3 | 3 |
DEL PEAK 39(16Q23.1) WILD-TYPE | 151 | 221 | 61 | 162 |
Figure S591. Get High-res Image Gene #71: 'del_16q23.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D71V6.png)
P value = 0.00052 (Fisher's exact test), Q value = 0.0014
Table S592. Gene #71: 'del_16q23.1' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 39(16Q23.1) MUTATED | 37 | 22 | 7 |
DEL PEAK 39(16Q23.1) WILD-TYPE | 197 | 232 | 151 |
Figure S592. Get High-res Image Gene #71: 'del_16q23.1' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D71V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S593. Gene #71: 'del_16q23.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 39(16Q23.1) MUTATED | 42 | 11 | 9 |
DEL PEAK 39(16Q23.1) WILD-TYPE | 191 | 224 | 183 |
Figure S593. Get High-res Image Gene #71: 'del_16q23.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D71V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S594. Gene #71: 'del_16q23.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 39(16Q23.1) MUTATED | 39 | 9 | 14 |
DEL PEAK 39(16Q23.1) WILD-TYPE | 164 | 181 | 253 |
Figure S594. Get High-res Image Gene #71: 'del_16q23.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D71V10.png)
P value = 0.0144 (Fisher's exact test), Q value = 0.028
Table S595. Gene #71: 'del_16q23.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 39(16Q23.1) MUTATED | 10 | 6 | 12 |
DEL PEAK 39(16Q23.1) WILD-TYPE | 212 | 178 | 91 |
Figure S595. Get High-res Image Gene #71: 'del_16q23.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D71V12.png)
P value = 0.0324 (Fisher's exact test), Q value = 0.057
Table S596. Gene #71: 'del_16q23.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 39(16Q23.1) MUTATED | 4 | 5 | 7 | 11 |
DEL PEAK 39(16Q23.1) WILD-TYPE | 87 | 132 | 181 | 78 |
Figure S596. Get High-res Image Gene #71: 'del_16q23.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D71V14.png)
P value = 0.00024 (Fisher's exact test), Q value = 0.00069
Table S597. Gene #72: 'del_17p13.1' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 40(17P13.1) MUTATED | 32 | 27 | 13 | 16 |
DEL PEAK 40(17P13.1) WILD-TYPE | 115 | 69 | 139 | 97 |
Figure S597. Get High-res Image Gene #72: 'del_17p13.1' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D72V1.png)
P value = 0.00138 (Fisher's exact test), Q value = 0.0034
Table S598. Gene #72: 'del_17p13.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 40(17P13.1) MUTATED | 32 | 27 | 9 | 20 |
DEL PEAK 40(17P13.1) WILD-TYPE | 116 | 75 | 91 | 138 |
Figure S598. Get High-res Image Gene #72: 'del_17p13.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D72V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S599. Gene #72: 'del_17p13.1' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 40(17P13.1) MUTATED | 82 | 29 | 5 |
DEL PEAK 40(17P13.1) WILD-TYPE | 451 | 513 | 10 |
Figure S599. Get High-res Image Gene #72: 'del_17p13.1' versus Molecular Subtype #5: 'CN_CNMF'
![](D72V5.png)
P value = 0.00045 (Fisher's exact test), Q value = 0.0013
Table S600. Gene #72: 'del_17p13.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 40(17P13.1) MUTATED | 21 | 10 | 3 | 2 |
DEL PEAK 40(17P13.1) WILD-TYPE | 163 | 227 | 61 | 163 |
Figure S600. Get High-res Image Gene #72: 'del_17p13.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D72V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S601. Gene #72: 'del_17p13.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 40(17P13.1) MUTATED | 36 | 8 | 3 |
DEL PEAK 40(17P13.1) WILD-TYPE | 197 | 227 | 189 |
Figure S601. Get High-res Image Gene #72: 'del_17p13.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D72V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S602. Gene #72: 'del_17p13.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 40(17P13.1) MUTATED | 30 | 13 | 4 |
DEL PEAK 40(17P13.1) WILD-TYPE | 173 | 177 | 263 |
Figure S602. Get High-res Image Gene #72: 'del_17p13.1' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D72V10.png)
P value = 0.00363 (Fisher's exact test), Q value = 0.0081
Table S603. Gene #72: 'del_17p13.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 40(17P13.1) MUTATED | 7 | 2 | 9 |
DEL PEAK 40(17P13.1) WILD-TYPE | 215 | 182 | 94 |
Figure S603. Get High-res Image Gene #72: 'del_17p13.1' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D72V12.png)
P value = 0.0441 (Fisher's exact test), Q value = 0.074
Table S604. Gene #72: 'del_17p13.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 40(17P13.1) MUTATED | 4 | 3 | 3 | 7 |
DEL PEAK 40(17P13.1) WILD-TYPE | 87 | 134 | 185 | 82 |
Figure S604. Get High-res Image Gene #72: 'del_17p13.1' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D72V14.png)
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
Table S605. Gene #73: 'del_17q11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 41(17Q11.2) MUTATED | 35 | 9 | 12 | 5 |
DEL PEAK 41(17Q11.2) WILD-TYPE | 112 | 87 | 140 | 108 |
Figure S605. Get High-res Image Gene #73: 'del_17q11.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D73V1.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00014
Table S606. Gene #73: 'del_17q11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 41(17Q11.2) MUTATED | 35 | 7 | 9 | 10 |
DEL PEAK 41(17Q11.2) WILD-TYPE | 113 | 95 | 91 | 148 |
Figure S606. Get High-res Image Gene #73: 'del_17q11.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D73V2.png)
P value = 0.00262 (Fisher's exact test), Q value = 0.0061
Table S607. Gene #73: 'del_17q11.2' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 41(17Q11.2) MUTATED | 29 | 16 | 4 | 19 |
DEL PEAK 41(17Q11.2) WILD-TYPE | 127 | 167 | 83 | 101 |
Figure S607. Get High-res Image Gene #73: 'del_17q11.2' versus Molecular Subtype #3: 'MIR_CNMF'
![](D73V3.png)
P value = 0.0109 (Fisher's exact test), Q value = 0.022
Table S608. Gene #73: 'del_17q11.2' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 41(17Q11.2) MUTATED | 26 | 24 | 18 |
DEL PEAK 41(17Q11.2) WILD-TYPE | 267 | 100 | 111 |
Figure S608. Get High-res Image Gene #73: 'del_17q11.2' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D73V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S609. Gene #73: 'del_17q11.2' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 41(17Q11.2) MUTATED | 66 | 21 | 6 |
DEL PEAK 41(17Q11.2) WILD-TYPE | 467 | 521 | 9 |
Figure S609. Get High-res Image Gene #73: 'del_17q11.2' versus Molecular Subtype #5: 'CN_CNMF'
![](D73V5.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.00062
Table S610. Gene #73: 'del_17q11.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 41(17Q11.2) MUTATED | 22 | 9 | 5 | 2 |
DEL PEAK 41(17Q11.2) WILD-TYPE | 162 | 228 | 59 | 163 |
Figure S610. Get High-res Image Gene #73: 'del_17q11.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D73V6.png)
P value = 0.0013 (Fisher's exact test), Q value = 0.0033
Table S611. Gene #73: 'del_17q11.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 41(17Q11.2) MUTATED | 29 | 11 | 7 |
DEL PEAK 41(17Q11.2) WILD-TYPE | 205 | 243 | 151 |
Figure S611. Get High-res Image Gene #73: 'del_17q11.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D73V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S612. Gene #73: 'del_17q11.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 41(17Q11.2) MUTATED | 29 | 7 | 4 |
DEL PEAK 41(17Q11.2) WILD-TYPE | 204 | 228 | 188 |
Figure S612. Get High-res Image Gene #73: 'del_17q11.2' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D73V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S613. Gene #73: 'del_17q11.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 41(17Q11.2) MUTATED | 25 | 11 | 4 |
DEL PEAK 41(17Q11.2) WILD-TYPE | 178 | 179 | 263 |
Figure S613. Get High-res Image Gene #73: 'del_17q11.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D73V10.png)
P value = 0.00613 (Fisher's exact test), Q value = 0.013
Table S614. Gene #73: 'del_17q11.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 41(17Q11.2) MUTATED | 5 | 3 | 3 | 9 |
DEL PEAK 41(17Q11.2) WILD-TYPE | 86 | 134 | 185 | 80 |
Figure S614. Get High-res Image Gene #73: 'del_17q11.2' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D73V14.png)
P value = 0.0489 (Fisher's exact test), Q value = 0.081
Table S615. Gene #74: 'del_18q23' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 42(18Q23) MUTATED | 19 | 18 | 11 | 16 |
DEL PEAK 42(18Q23) WILD-TYPE | 128 | 78 | 141 | 97 |
Figure S615. Get High-res Image Gene #74: 'del_18q23' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D74V1.png)
P value = 0.0193 (Fisher's exact test), Q value = 0.036
Table S616. Gene #74: 'del_18q23' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 42(18Q23) MUTATED | 22 | 15 | 4 | 23 |
DEL PEAK 42(18Q23) WILD-TYPE | 126 | 87 | 96 | 135 |
Figure S616. Get High-res Image Gene #74: 'del_18q23' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D74V2.png)
P value = 0.00465 (Fisher's exact test), Q value = 0.01
Table S617. Gene #74: 'del_18q23' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 42(18Q23) MUTATED | 32 | 24 | 5 | 35 |
DEL PEAK 42(18Q23) WILD-TYPE | 152 | 213 | 59 | 130 |
Figure S617. Get High-res Image Gene #74: 'del_18q23' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D74V6.png)
P value = 0.00453 (Fisher's exact test), Q value = 0.01
Table S618. Gene #75: 'del_19q13.41' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 43(19Q13.41) MUTATED | 21 | 23 | 17 | 29 |
DEL PEAK 43(19Q13.41) WILD-TYPE | 126 | 73 | 135 | 84 |
Figure S618. Get High-res Image Gene #75: 'del_19q13.41' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D75V1.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00017
Table S619. Gene #75: 'del_19q13.41' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 43(19Q13.41) MUTATED | 23 | 34 | 8 | 25 |
DEL PEAK 43(19Q13.41) WILD-TYPE | 125 | 68 | 92 | 133 |
Figure S619. Get High-res Image Gene #75: 'del_19q13.41' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D75V2.png)
P value = 0.0443 (Fisher's exact test), Q value = 0.074
Table S620. Gene #75: 'del_19q13.41' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 43(19Q13.41) MUTATED | 62 | 19 | 15 |
DEL PEAK 43(19Q13.41) WILD-TYPE | 231 | 105 | 114 |
Figure S620. Get High-res Image Gene #75: 'del_19q13.41' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'
![](D75V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S621. Gene #75: 'del_19q13.41' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 43(19Q13.41) MUTATED | 74 | 290 | 2 |
DEL PEAK 43(19Q13.41) WILD-TYPE | 459 | 252 | 13 |
Figure S621. Get High-res Image Gene #75: 'del_19q13.41' versus Molecular Subtype #5: 'CN_CNMF'
![](D75V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S622. Gene #75: 'del_19q13.41' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 43(19Q13.41) MUTATED | 26 | 81 | 15 | 165 |
DEL PEAK 43(19Q13.41) WILD-TYPE | 158 | 156 | 49 | 0 |
Figure S622. Get High-res Image Gene #75: 'del_19q13.41' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D75V6.png)
P value = 0.0433 (Fisher's exact test), Q value = 0.073
Table S623. Gene #75: 'del_19q13.41' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 43(19Q13.41) MUTATED | 81 | 98 | 88 |
DEL PEAK 43(19Q13.41) WILD-TYPE | 143 | 106 | 130 |
Figure S623. Get High-res Image Gene #75: 'del_19q13.41' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D75V7.png)
P value = 0.00132 (Fisher's exact test), Q value = 0.0033
Table S624. Gene #75: 'del_19q13.41' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 43(19Q13.41) MUTATED | 87 | 95 | 85 |
DEL PEAK 43(19Q13.41) WILD-TYPE | 147 | 159 | 73 |
Figure S624. Get High-res Image Gene #75: 'del_19q13.41' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D75V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S625. Gene #75: 'del_19q13.41' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 43(19Q13.41) MUTATED | 43 | 128 | 121 |
DEL PEAK 43(19Q13.41) WILD-TYPE | 190 | 107 | 71 |
Figure S625. Get High-res Image Gene #75: 'del_19q13.41' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D75V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S626. Gene #75: 'del_19q13.41' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 43(19Q13.41) MUTATED | 24 | 69 | 199 |
DEL PEAK 43(19Q13.41) WILD-TYPE | 179 | 121 | 68 |
Figure S626. Get High-res Image Gene #75: 'del_19q13.41' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D75V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S627. Gene #75: 'del_19q13.41' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 43(19Q13.41) MUTATED | 50 | 36 | 107 | 74 |
DEL PEAK 43(19Q13.41) WILD-TYPE | 87 | 71 | 76 | 8 |
Figure S627. Get High-res Image Gene #75: 'del_19q13.41' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D75V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S628. Gene #75: 'del_19q13.41' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 43(19Q13.41) MUTATED | 129 | 118 | 20 |
DEL PEAK 43(19Q13.41) WILD-TYPE | 93 | 66 | 83 |
Figure S628. Get High-res Image Gene #75: 'del_19q13.41' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D75V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S629. Gene #75: 'del_19q13.41' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 43(19Q13.41) MUTATED | 61 | 110 | 95 |
DEL PEAK 43(19Q13.41) WILD-TYPE | 124 | 51 | 64 |
Figure S629. Get High-res Image Gene #75: 'del_19q13.41' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D75V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S630. Gene #75: 'del_19q13.41' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 43(19Q13.41) MUTATED | 32 | 105 | 113 | 16 |
DEL PEAK 43(19Q13.41) WILD-TYPE | 59 | 32 | 75 | 73 |
Figure S630. Get High-res Image Gene #75: 'del_19q13.41' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D75V14.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S631. Gene #76: 'del_19q13.43' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 44(19Q13.43) MUTATED | 17 | 23 | 6 | 29 |
DEL PEAK 44(19Q13.43) WILD-TYPE | 130 | 73 | 146 | 84 |
Figure S631. Get High-res Image Gene #76: 'del_19q13.43' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D76V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S632. Gene #76: 'del_19q13.43' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 44(19Q13.43) MUTATED | 18 | 32 | 2 | 23 |
DEL PEAK 44(19Q13.43) WILD-TYPE | 130 | 70 | 98 | 135 |
Figure S632. Get High-res Image Gene #76: 'del_19q13.43' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D76V2.png)
P value = 0.00094 (Fisher's exact test), Q value = 0.0025
Table S633. Gene #76: 'del_19q13.43' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 44(19Q13.43) MUTATED | 14 | 43 | 9 | 14 |
DEL PEAK 44(19Q13.43) WILD-TYPE | 142 | 140 | 78 | 106 |
Figure S633. Get High-res Image Gene #76: 'del_19q13.43' versus Molecular Subtype #3: 'MIR_CNMF'
![](D76V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S634. Gene #76: 'del_19q13.43' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 44(19Q13.43) MUTATED | 52 | 299 | 3 |
DEL PEAK 44(19Q13.43) WILD-TYPE | 481 | 243 | 12 |
Figure S634. Get High-res Image Gene #76: 'del_19q13.43' versus Molecular Subtype #5: 'CN_CNMF'
![](D76V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S635. Gene #76: 'del_19q13.43' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 44(19Q13.43) MUTATED | 21 | 89 | 15 | 163 |
DEL PEAK 44(19Q13.43) WILD-TYPE | 163 | 148 | 49 | 2 |
Figure S635. Get High-res Image Gene #76: 'del_19q13.43' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D76V6.png)
P value = 0.00792 (Fisher's exact test), Q value = 0.016
Table S636. Gene #76: 'del_19q13.43' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 44(19Q13.43) MUTATED | 90 | 92 | 81 |
DEL PEAK 44(19Q13.43) WILD-TYPE | 144 | 162 | 77 |
Figure S636. Get High-res Image Gene #76: 'del_19q13.43' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D76V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S637. Gene #76: 'del_19q13.43' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 44(19Q13.43) MUTATED | 39 | 134 | 120 |
DEL PEAK 44(19Q13.43) WILD-TYPE | 194 | 101 | 72 |
Figure S637. Get High-res Image Gene #76: 'del_19q13.43' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D76V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S638. Gene #76: 'del_19q13.43' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 44(19Q13.43) MUTATED | 19 | 76 | 198 |
DEL PEAK 44(19Q13.43) WILD-TYPE | 184 | 114 | 69 |
Figure S638. Get High-res Image Gene #76: 'del_19q13.43' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D76V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S639. Gene #76: 'del_19q13.43' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 44(19Q13.43) MUTATED | 55 | 37 | 102 | 76 |
DEL PEAK 44(19Q13.43) WILD-TYPE | 82 | 70 | 81 | 6 |
Figure S639. Get High-res Image Gene #76: 'del_19q13.43' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D76V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S640. Gene #76: 'del_19q13.43' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 44(19Q13.43) MUTATED | 136 | 115 | 19 |
DEL PEAK 44(19Q13.43) WILD-TYPE | 86 | 69 | 84 |
Figure S640. Get High-res Image Gene #76: 'del_19q13.43' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D76V12.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S641. Gene #76: 'del_19q13.43' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 44(19Q13.43) MUTATED | 64 | 113 | 92 |
DEL PEAK 44(19Q13.43) WILD-TYPE | 121 | 48 | 67 |
Figure S641. Get High-res Image Gene #76: 'del_19q13.43' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D76V13.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S642. Gene #76: 'del_19q13.43' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 44(19Q13.43) MUTATED | 36 | 108 | 110 | 15 |
DEL PEAK 44(19Q13.43) WILD-TYPE | 55 | 29 | 78 | 74 |
Figure S642. Get High-res Image Gene #76: 'del_19q13.43' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D76V14.png)
P value = 0.0396 (Fisher's exact test), Q value = 0.068
Table S643. Gene #77: 'del_22q13.32' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 45(22Q13.32) MUTATED | 59 | 82 | 24 | 41 |
DEL PEAK 45(22Q13.32) WILD-TYPE | 97 | 101 | 63 | 79 |
Figure S643. Get High-res Image Gene #77: 'del_22q13.32' versus Molecular Subtype #3: 'MIR_CNMF'
![](D77V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S644. Gene #77: 'del_22q13.32' versus Molecular Subtype #5: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 533 | 542 | 15 |
DEL PEAK 45(22Q13.32) MUTATED | 203 | 81 | 5 |
DEL PEAK 45(22Q13.32) WILD-TYPE | 330 | 461 | 10 |
Figure S644. Get High-res Image Gene #77: 'del_22q13.32' versus Molecular Subtype #5: 'CN_CNMF'
![](D77V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S645. Gene #77: 'del_22q13.32' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 45(22Q13.32) MUTATED | 65 | 45 | 15 | 5 |
DEL PEAK 45(22Q13.32) WILD-TYPE | 119 | 192 | 49 | 160 |
Figure S645. Get High-res Image Gene #77: 'del_22q13.32' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D77V6.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.00035
Table S646. Gene #77: 'del_22q13.32' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 45(22Q13.32) MUTATED | 43 | 31 | 70 |
DEL PEAK 45(22Q13.32) WILD-TYPE | 181 | 173 | 148 |
Figure S646. Get High-res Image Gene #77: 'del_22q13.32' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D77V7.png)
P value = 0.00217 (Fisher's exact test), Q value = 0.0052
Table S647. Gene #77: 'del_22q13.32' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 45(22Q13.32) MUTATED | 60 | 64 | 20 |
DEL PEAK 45(22Q13.32) WILD-TYPE | 174 | 190 | 138 |
Figure S647. Get High-res Image Gene #77: 'del_22q13.32' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D77V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S648. Gene #77: 'del_22q13.32' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 45(22Q13.32) MUTATED | 89 | 29 | 23 |
DEL PEAK 45(22Q13.32) WILD-TYPE | 144 | 206 | 169 |
Figure S648. Get High-res Image Gene #77: 'del_22q13.32' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D77V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S649. Gene #77: 'del_22q13.32' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 45(22Q13.32) MUTATED | 80 | 36 | 25 |
DEL PEAK 45(22Q13.32) WILD-TYPE | 123 | 154 | 242 |
Figure S649. Get High-res Image Gene #77: 'del_22q13.32' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D77V10.png)
P value = 0.0216 (Fisher's exact test), Q value = 0.04
Table S650. Gene #77: 'del_22q13.32' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 45(22Q13.32) MUTATED | 26 | 23 | 21 | 7 |
DEL PEAK 45(22Q13.32) WILD-TYPE | 111 | 84 | 162 | 75 |
Figure S650. Get High-res Image Gene #77: 'del_22q13.32' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D77V11.png)
P value = 1e-05 (Fisher's exact test), Q value = 3.8e-05
Table S651. Gene #77: 'del_22q13.32' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 222 | 184 | 103 |
DEL PEAK 45(22Q13.32) MUTATED | 27 | 18 | 32 |
DEL PEAK 45(22Q13.32) WILD-TYPE | 195 | 166 | 71 |
Figure S651. Get High-res Image Gene #77: 'del_22q13.32' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'
![](D77V12.png)
P value = 0.00051 (Fisher's exact test), Q value = 0.0014
Table S652. Gene #77: 'del_22q13.32' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 185 | 161 | 159 |
DEL PEAK 45(22Q13.32) MUTATED | 43 | 18 | 15 |
DEL PEAK 45(22Q13.32) WILD-TYPE | 142 | 143 | 144 |
Figure S652. Get High-res Image Gene #77: 'del_22q13.32' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'
![](D77V13.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.00035
Table S653. Gene #77: 'del_22q13.32' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 91 | 137 | 188 | 89 |
DEL PEAK 45(22Q13.32) MUTATED | 12 | 18 | 18 | 28 |
DEL PEAK 45(22Q13.32) WILD-TYPE | 79 | 119 | 170 | 61 |
Figure S653. Get High-res Image Gene #77: 'del_22q13.32' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D77V14.png)
P value = 0.00611 (Fisher's exact test), Q value = 0.013
Table S654. Gene #78: 'del_xp22.2' versus Molecular Subtype #1: 'MRNA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 46(XP22.2) MUTATED | 24 | 32 | 25 | 27 |
DEL PEAK 46(XP22.2) WILD-TYPE | 123 | 64 | 127 | 86 |
Figure S654. Get High-res Image Gene #78: 'del_xp22.2' versus Molecular Subtype #1: 'MRNA_CNMF'
![](D78V1.png)
P value = 0.00145 (Fisher's exact test), Q value = 0.0036
Table S655. Gene #78: 'del_xp22.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 46(XP22.2) MUTATED | 22 | 36 | 18 | 32 |
DEL PEAK 46(XP22.2) WILD-TYPE | 126 | 66 | 82 | 126 |
Figure S655. Get High-res Image Gene #78: 'del_xp22.2' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D78V2.png)
P value = 0.00371 (Fisher's exact test), Q value = 0.0083
Table S656. Gene #78: 'del_xp22.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 46(XP22.2) MUTATED | 35 | 65 | 5 | 34 |
DEL PEAK 46(XP22.2) WILD-TYPE | 149 | 172 | 59 | 131 |
Figure S656. Get High-res Image Gene #78: 'del_xp22.2' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D78V6.png)
P value = 0.00293 (Fisher's exact test), Q value = 0.0068
Table S657. Gene #78: 'del_xp22.2' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 46(XP22.2) MUTATED | 49 | 30 | 62 |
DEL PEAK 46(XP22.2) WILD-TYPE | 175 | 174 | 156 |
Figure S657. Get High-res Image Gene #78: 'del_xp22.2' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D78V7.png)
P value = 0.0212 (Fisher's exact test), Q value = 0.039
Table S658. Gene #78: 'del_xp22.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 46(XP22.2) MUTATED | 64 | 52 | 25 |
DEL PEAK 46(XP22.2) WILD-TYPE | 170 | 202 | 133 |
Figure S658. Get High-res Image Gene #78: 'del_xp22.2' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D78V8.png)
P value = 0.0171 (Fisher's exact test), Q value = 0.032
Table S659. Gene #78: 'del_xp22.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 190 | 267 |
DEL PEAK 46(XP22.2) MUTATED | 43 | 57 | 50 |
DEL PEAK 46(XP22.2) WILD-TYPE | 160 | 133 | 217 |
Figure S659. Get High-res Image Gene #78: 'del_xp22.2' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'
![](D78V10.png)
P value = 0.0308 (Fisher's exact test), Q value = 0.054
Table S660. Gene #78: 'del_xp22.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 46(XP22.2) MUTATED | 27 | 27 | 30 | 26 |
DEL PEAK 46(XP22.2) WILD-TYPE | 110 | 80 | 153 | 56 |
Figure S660. Get High-res Image Gene #78: 'del_xp22.2' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D78V11.png)
P value = 0.00089 (Fisher's exact test), Q value = 0.0023
Table S661. Gene #79: 'del_xq21.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 47(XQ21.1) MUTATED | 16 | 32 | 16 | 29 |
DEL PEAK 47(XQ21.1) WILD-TYPE | 132 | 70 | 84 | 129 |
Figure S661. Get High-res Image Gene #79: 'del_xq21.1' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
![](D79V2.png)
P value = 0.038 (Fisher's exact test), Q value = 0.065
Table S662. Gene #79: 'del_xq21.1' versus Molecular Subtype #3: 'MIR_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 47(XQ21.1) MUTATED | 24 | 46 | 14 | 16 |
DEL PEAK 47(XQ21.1) WILD-TYPE | 132 | 137 | 73 | 104 |
Figure S662. Get High-res Image Gene #79: 'del_xq21.1' versus Molecular Subtype #3: 'MIR_CNMF'
![](D79V3.png)
P value = 0.0106 (Fisher's exact test), Q value = 0.021
Table S663. Gene #79: 'del_xq21.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 184 | 237 | 64 | 165 |
DEL PEAK 47(XQ21.1) MUTATED | 40 | 39 | 3 | 30 |
DEL PEAK 47(XQ21.1) WILD-TYPE | 144 | 198 | 61 | 135 |
Figure S663. Get High-res Image Gene #79: 'del_xq21.1' versus Molecular Subtype #6: 'METHLYATION_CNMF'
![](D79V6.png)
P value = 0.00062 (Fisher's exact test), Q value = 0.0017
Table S664. Gene #79: 'del_xq21.1' versus Molecular Subtype #7: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 204 | 218 |
DEL PEAK 47(XQ21.1) MUTATED | 40 | 21 | 53 |
DEL PEAK 47(XQ21.1) WILD-TYPE | 184 | 183 | 165 |
Figure S664. Get High-res Image Gene #79: 'del_xq21.1' versus Molecular Subtype #7: 'RPPA_CNMF'
![](D79V7.png)
P value = 0.0316 (Fisher's exact test), Q value = 0.055
Table S665. Gene #79: 'del_xq21.1' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 234 | 254 | 158 |
DEL PEAK 47(XQ21.1) MUTATED | 52 | 43 | 19 |
DEL PEAK 47(XQ21.1) WILD-TYPE | 182 | 211 | 139 |
Figure S665. Get High-res Image Gene #79: 'del_xq21.1' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'
![](D79V8.png)
P value = 0.00121 (Fisher's exact test), Q value = 0.0031
Table S666. Gene #79: 'del_xq21.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 233 | 235 | 192 |
DEL PEAK 47(XQ21.1) MUTATED | 57 | 38 | 21 |
DEL PEAK 47(XQ21.1) WILD-TYPE | 176 | 197 | 171 |
Figure S666. Get High-res Image Gene #79: 'del_xq21.1' versus Molecular Subtype #9: 'MRNASEQ_CNMF'
![](D79V9.png)
P value = 0.00103 (Fisher's exact test), Q value = 0.0027
Table S667. Gene #79: 'del_xq21.1' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 137 | 107 | 183 | 82 |
DEL PEAK 47(XQ21.1) MUTATED | 14 | 19 | 21 | 24 |
DEL PEAK 47(XQ21.1) WILD-TYPE | 123 | 88 | 162 | 58 |
Figure S667. Get High-res Image Gene #79: 'del_xq21.1' versus Molecular Subtype #11: 'MIRSEQ_CNMF'
![](D79V11.png)
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Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBMLGG-TP/20157420/transformed.cor.cli.txt
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Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBMLGG-TP/20148947/GBMLGG-TP.transferedmergedcluster.txt
-
Number of patients = 1090
-
Number of significantly focal cnvs = 79
-
Number of molecular subtypes = 14
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.