Correlation between gene mutation status and molecular subtypes
Glioma (Primary solid tumor)
21 August 2015  |  analyses__2015_08_21
Maintainer Information
Citation Information
doi:10.7908/C1QN660W
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2015): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1QN660W
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 174 genes and 14 molecular subtypes across 796 patients, 194 significant findings detected with P value < 0.05 and Q value < 0.25.

  • IDH1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MIR_CNMF',  'MIR_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TP53 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MIR_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ATRX mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'MIR_CNMF',  'MIR_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CIC mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NF1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PIK3R1 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • NOTCH1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • IDH2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FUBP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RB1 mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PIK3CA mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PTEN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARID1A mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SLC26A3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NIPBL mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • ZMIZ1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • NUDT11 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CREBZF mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • PLCG1 mutation correlated to 'CN_CNMF'.

  • STAG2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SEMG1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MUC17 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CNMF'.

  • PDGFRA mutation correlated to 'MRNA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • NUP210L mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.

  • REN mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • RBPJ mutation correlated to 'RPPA_CHIERARCHICAL'.

  • PTPN11 mutation correlated to 'MIR_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RPL5 mutation correlated to 'METHLYATION_CNMF'.

  • BRAF mutation correlated to 'METHLYATION_CNMF'.

  • FAM47C mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TRERF1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SETD2 mutation correlated to 'MRNA_CNMF'.

  • DSP mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • KTELC1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • TLR6 mutation correlated to 'METHLYATION_CNMF'.

  • EGFR mutation correlated to 'MRNA_CNMF',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ACADS mutation correlated to 'CN_CNMF'.

  • ATF7IP2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • ZBTB20 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ZDHHC4 mutation correlated to 'METHLYATION_CNMF'.

  • GRHL3 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • RASGRF2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • LGALS13 mutation correlated to 'METHLYATION_CNMF'.

  • DOCK5 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SMARCA4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • QKI mutation correlated to 'CN_CNMF'.

  • TMPRSS6 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MYT1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • PASD1 mutation correlated to 'MIR_CHIERARCHICAL'.

  • FMR1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SOX13 mutation correlated to 'METHLYATION_CNMF'.

  • AK7 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GABRA6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • WDR90 mutation correlated to 'MIR_CNMF'.

  • NKPD1 mutation correlated to 'CN_CNMF'.

  • TP63 mutation correlated to 'RPPA_CNMF'.

  • NKX2-2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • SEZ6L2 mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.

  • PRKCD mutation correlated to 'CN_CNMF'.

  • CHD8 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • IGFN1 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • LRRC55 mutation correlated to 'MIRSEQ_CNMF'.

  • WDR63 mutation correlated to 'MRNASEQ_CNMF'.

  • KIF26B mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 174 genes and 14 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 194 significant findings detected.

Clinical
Features 		MRNA
CNMF 		MRNA
CHIERARCHICAL 		MIR
CNMF 		MIR
CHIERARCHICAL 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
IDH1 412 (52%) 384 6e-05
(0.00203) 		1e-05
(0.000413) 		2e-05
(0.000786) 		0.00322
(0.0694) 		1e-05
(0.000413) 		1e-05
(0.000413) 		0.023
(0.266) 		0.121
(0.676) 		1e-05
(0.000413) 		1e-05
(0.000413) 		3e-05
(0.00109) 		1e-05
(0.000413) 		1e-05
(0.000413) 		1e-05
(0.000413)
TP53 328 (41%) 468 0.00087
(0.0228) 		2e-05
(0.000786) 		0.00085
(0.0228) 		0.202
(0.85) 		1e-05
(0.000413) 		1e-05
(0.000413) 		0.276
(0.954) 		0.00902
(0.149) 		1e-05
(0.000413) 		1e-05
(0.000413) 		1e-05
(0.000413) 		1e-05
(0.000413) 		0.0538
(0.433) 		1e-05
(0.000413)
ATRX 211 (27%) 585 0.00215
(0.0494) 		1e-05
(0.000413) 		0.00654
(0.12) 		0.018
(0.232) 		1e-05
(0.000413) 		1e-05
(0.000413) 		0.959
(1.00) 		0.72
(1.00) 		1e-05
(0.000413) 		1e-05
(0.000413) 		1e-05
(0.000413) 		3e-05
(0.00109) 		0.26
(0.952) 		1e-05
(0.000413)
EGFR 109 (14%) 687 0.00713
(0.127) 		0.0563
(0.447) 		0.51
(1.00) 		0.14
(0.742) 		1e-05
(0.000413) 		1e-05
(0.000413) 		0.0725
(0.513) 		0.0196
(0.246) 		1e-05
(0.000413) 		1e-05
(0.000413) 		0.0107
(0.17) 		1e-05
(0.000413) 		1e-05
(0.000413) 		1e-05
(0.000413)
NF1 62 (8%) 734 0.081
(0.557) 		0.00047
(0.0135) 		0.0244
(0.276) 		0.931
(1.00) 		0.00273
(0.0605) 		1e-05
(0.000413) 		0.899
(1.00) 		3e-05
(0.00109) 		6e-05
(0.00203) 		0.00175
(0.0414) 		0.338
(1.00) 		0.00014
(0.00426) 		0.00502
(0.0978) 		1e-05
(0.000413)
CIC 109 (14%) 687 1e-05
(0.000413) 		1e-05
(0.000413) 		0.271
(0.952) 		0.258
(0.952) 		1e-05
(0.000413) 		1e-05
(0.000413) 		1e-05
(0.000413) 		1e-05
(0.000413) 		1e-05
(0.000413) 		1e-05
(0.000413)
NOTCH1 42 (5%) 754 1e-05
(0.000413) 		1e-05
(0.000413) 		0.818
(1.00) 		1
(1.00) 		1e-05
(0.000413) 		1e-05
(0.000413) 		0.00021
(0.00624) 		0.00404
(0.082) 		0.00161
(0.0388) 		0.00012
(0.0037)
FUBP1 47 (6%) 749 1e-05
(0.000413) 		1e-05
(0.000413) 		0.434
(1.00) 		0.423
(1.00) 		1e-05
(0.000413) 		1e-05
(0.000413) 		2e-05
(0.000786) 		0.0009
(0.0233) 		0.00767
(0.133) 		1e-05
(0.000413)
PTEN 111 (14%) 685 0.116
(0.669) 		0.0739
(0.52) 		0.0274
(0.295) 		0.647
(1.00) 		1e-05
(0.000413) 		1e-05
(0.000413) 		0.192
(0.848) 		0.115
(0.669) 		1e-05
(0.000413) 		1e-05
(0.000413) 		0.00376
(0.0776) 		1e-05
(0.000413) 		1e-05
(0.000413) 		1e-05
(0.000413)
IDH2 20 (3%) 776 0.00037
(0.0107) 		7e-05
(0.0023) 		0.454
(1.00) 		0.133
(0.725) 		3e-05
(0.00109) 		1e-05
(0.000413) 		0.00917
(0.15) 		0.0007
(0.0192) 		0.00305
(0.0663) 		0.0468
(0.413)
RB1 30 (4%) 766 0.0337
(0.34) 		0.0173
(0.227) 		0.132
(0.721) 		0.923
(1.00) 		1e-05
(0.000413) 		1e-05
(0.000413) 		0.236
(0.905) 		0.176
(0.832) 		8e-05
(0.0026) 		6e-05
(0.00203) 		0.602
(1.00) 		0.0324
(0.328) 		0.782
(1.00) 		0.246
(0.928)
STAG2 16 (2%) 780 0.391
(1.00) 		0.698
(1.00) 		0.715
(1.00) 		0.591
(1.00) 		0.0001
(0.00312) 		0.00066
(0.0183) 		0.854
(1.00) 		0.0592
(0.457) 		9e-05
(0.00285) 		0.00113
(0.0283) 		0.588
(1.00) 		0.0139
(0.194) 		0.474
(1.00) 		0.237
(0.907)
PDGFRA 21 (3%) 775 0.0131
(0.189) 		0.148
(0.77) 		0.904
(1.00) 		0.137
(0.739) 		0.48
(1.00) 		0.291
(0.971) 		0.147
(0.769) 		0.00749
(0.131) 		0.00403
(0.082) 		0.0234
(0.266) 		0.00063
(0.0176) 		0.00147
(0.0362) 		0.851
(1.00) 		0.186
(0.848)
SEMG1 11 (1%) 785 0.679
(1.00) 		0.176
(0.832) 		0.888
(1.00) 		1
(1.00) 		0.00099
(0.0254) 		0.0129
(0.189) 		0.546
(1.00) 		0.785
(1.00) 		0.0023
(0.0519) 		0.00916
(0.15) 		0.19
(0.848) 		0.151
(0.778) 		0.65
(1.00) 		0.439
(1.00)
PTPN11 11 (1%) 785 1
(1.00) 		0.785
(1.00) 		0.00638
(0.118) 		1
(1.00) 		0.561
(1.00) 		0.0316
(0.322) 		1
(1.00) 		0.26
(0.952) 		0.228
(0.891) 		0.268
(0.952) 		0.222
(0.884) 		0.00544
(0.103) 		0.0161
(0.219) 		0.00229
(0.0519)
ZBTB20 22 (3%) 774 7e-05
(0.0023) 		3e-05
(0.00109) 		0.0843
(0.57) 		0.0931
(0.592) 		9e-05
(0.00285) 		4e-05
(0.00143) 		0.158
(0.794) 		0.0204
(0.254) 		0.0411
(0.387) 		0.0317
(0.322)
SMARCA4 27 (3%) 769 0.00202
(0.0469) 		0.0163
(0.219) 		0.274
(0.952) 		0.8
(1.00) 		0.00576
(0.108) 		0.00973
(0.155) 		0.304
(0.984) 		0.245
(0.926) 		0.873
(1.00) 		0.166
(0.806)
GABRA6 15 (2%) 781 0.11
(0.655) 		0.532
(1.00) 		0.142
(0.749) 		0.115
(0.669) 		0.00352
(0.0733) 		0.0093
(0.151) 		0.489
(1.00) 		0.924
(1.00) 		0.00114
(0.0283) 		0.0918
(0.588) 		0.59
(1.00) 		0.0132
(0.189) 		0.474
(1.00) 		0.238
(0.907)
PIK3CA 71 (9%) 725 0.953
(1.00) 		0.288
(0.971) 		0.291
(0.971) 		0.861
(1.00) 		0.667
(1.00) 		1e-05
(0.000413) 		0.372
(1.00) 		0.38
(1.00) 		0.425
(1.00) 		0.0368
(0.358) 		0.00952
(0.153) 		0.039
(0.372) 		0.328
(1.00) 		0.00087
(0.0228)
SLC26A3 11 (1%) 785 0.941
(1.00) 		0.767
(1.00) 		0.466
(1.00) 		0.366
(1.00) 		0.0111
(0.174) 		0.0221
(0.264) 		0.0988
(0.619) 		0.0647
(0.482) 		0.00459
(0.0909) 		0.00617
(0.115) 		0.0458
(0.412) 		0.0278
(0.296) 		1
(1.00) 		0.185
(0.848)
FAM47C 23 (3%) 773 0.479
(1.00) 		0.0582
(0.456) 		0.403
(1.00) 		0.843
(1.00) 		0.329
(1.00) 		0.541
(1.00) 		0.914
(1.00) 		0.757
(1.00) 		0.0512
(0.428) 		0.0047
(0.0923) 		0.614
(1.00) 		0.0916
(0.588) 		0.00856
(0.143) 		0.00345
(0.0724)
PIK3R1 54 (7%) 742 0.751
(1.00) 		0.191
(0.848) 		0.196
(0.848) 		0.528
(1.00) 		0.0171
(0.225) 		5e-05
(0.00177) 		1
(1.00) 		0.918
(1.00) 		0.248
(0.934) 		0.926
(1.00) 		0.0869
(0.578) 		0.582
(1.00) 		0.962
(1.00) 		0.63
(1.00)
NIPBL 20 (3%) 776 0.028
(0.296) 		0.00021
(0.00624) 		0.234
(0.904) 		0.57
(1.00) 		0.0527
(0.428) 		0.0481
(0.42) 		0.449
(1.00) 		0.172
(0.819) 		0.0116
(0.179) 		0.0592
(0.457)
NUDT11 11 (1%) 785 0.0165
(0.22) 		0.35
(1.00) 		0.64
(1.00) 		0.294
(0.971) 		0.38
(1.00) 		0.015
(0.206) 		0.0261
(0.289) 		0.918
(1.00) 		0.17
(0.813) 		0.295
(0.971)
CREBZF 9 (1%) 787 0.0371
(0.359) 		0.0006
(0.017) 		0.331
(1.00) 		0.431
(1.00) 		0.0213
(0.262) 		0.0687
(0.504) 		0.201
(0.848) 		0.0139
(0.194) 		0.117
(0.669) 		0.0532
(0.43)
MUC17 49 (6%) 747 0.0128
(0.189) 		0.191
(0.848) 		0.707
(1.00) 		0.704
(1.00) 		0.158
(0.794) 		0.35
(1.00) 		0.36
(1.00) 		0.258
(0.952) 		0.0131
(0.189) 		0.209
(0.857) 		0.0267
(0.291) 		0.0399
(0.379) 		0.0278
(0.296) 		0.0616
(0.47)
NUP210L 12 (2%) 784 0.81
(1.00) 		0.427
(1.00) 		0.411
(1.00) 		0.36
(1.00) 		0.199
(0.848) 		0.0128
(0.189) 		0.587
(1.00) 		1
(1.00) 		0.0163
(0.219) 		0.205
(0.854) 		0.4
(1.00) 		0.0765
(0.532) 		0.164
(0.805) 		0.357
(1.00)
REN 7 (1%) 789 0.477
(1.00) 		0.417
(1.00) 		0.0734
(0.518) 		0.511
(1.00) 		0.00281
(0.0617) 		0.00269
(0.0601) 		0.458
(1.00) 		0.887
(1.00) 		0.201
(0.848) 		0.786
(1.00)
ATF7IP2 8 (1%) 788 0.912
(1.00) 		1
(1.00) 		0.285
(0.969) 		0.106
(0.647) 		0.00339
(0.072) 		0.316
(0.987) 		0.873
(1.00) 		1
(1.00) 		0.0222
(0.264) 		0.103
(0.635) 		1
(1.00) 		0.00849
(0.143) 		0.652
(1.00) 		0.0886
(0.585)
DOCK5 20 (3%) 776 0.26
(0.952) 		0.908
(1.00) 		0.0593
(0.457) 		0.299
(0.974) 		0.0253
(0.284) 		0.0346
(0.347) 		0.0267
(0.291) 		0.165
(0.806) 		0.0121
(0.185) 		0.00543
(0.103) 		0.0384
(0.368) 		0.0663
(0.489) 		0.727
(1.00) 		0.46
(1.00)
TMPRSS6 9 (1%) 787 0.665
(1.00) 		0.705
(1.00) 		0.662
(1.00) 		0.267
(0.952) 		0.05
(0.427) 		0.0237
(0.268) 		0.226
(0.888) 		0.115
(0.669) 		0.00152
(0.037) 		0.00695
(0.125) 		0.191
(0.848) 		0.153
(0.78) 		0.65
(1.00) 		0.438
(1.00)
AK7 9 (1%) 787 0.138
(0.739) 		0.127
(0.694) 		0.59
(1.00) 		0.235
(0.905) 		0.0513
(0.428) 		0.0719
(0.512) 		0.804
(1.00) 		0.494
(1.00) 		0.164
(0.806) 		0.0861
(0.576) 		0.0811
(0.557) 		0.00168
(0.0401) 		0.269
(0.952) 		0.0011
(0.0279)
SEZ6L2 7 (1%) 789 0.837
(1.00) 		0.472
(1.00) 		0.101
(0.631) 		0.124
(0.687) 		0.473
(1.00) 		0.884
(1.00) 		0.0113
(0.177) 		0.0041
(0.0825) 		0.168
(0.81) 		1
(1.00) 		0.28
(0.954) 		0.0984
(0.618) 		0.0303
(0.311) 		0.317
(0.987)
CHD8 11 (1%) 785 0.699
(1.00) 		0.532
(1.00) 		0.135
(0.73) 		0.646
(1.00) 		0.199
(0.848) 		0.0504
(0.428) 		0.293
(0.971) 		0.479
(1.00) 		0.0169
(0.224) 		0.0186
(0.237)
IGFN1 9 (1%) 787 1
(1.00) 		1
(1.00) 		0.772
(1.00) 		0.558
(1.00) 		0.124
(0.687) 		0.00086
(0.0228) 		0.871
(1.00) 		0.644
(1.00) 		0.0224
(0.264) 		0.19
(0.848) 		1
(1.00) 		0.00813
(0.138) 		0.412
(1.00) 		0.149
(0.774)
KIF26B 6 (1%) 790 0.695
(1.00) 		0.0133
(0.189) 		0.872
(1.00) 		0.543
(1.00) 		0.123
(0.687) 		0.884
(1.00) 		1
(1.00) 		0.0034
(0.072) 		0.456
(1.00) 		0.0847
(0.57)
ARID1A 22 (3%) 774 0.0204
(0.254) 		0.022
(0.264) 		0.411
(1.00) 		1
(1.00) 		0.0255
(0.285) 		0.00531
(0.103) 		0.316
(0.987) 		0.605
(1.00) 		0.0827
(0.563) 		0.0295
(0.306)
ZMIZ1 13 (2%) 783 0.505
(1.00) 		0.912
(1.00) 		0.643
(1.00) 		0.443
(1.00) 		0.236
(0.905) 		0.328
(1.00) 		0.0647
(0.482) 		0.118
(0.671) 		0.869
(1.00) 		0.342
(1.00) 		0.478
(1.00) 		0.679
(1.00) 		0.0187
(0.237) 		0.419
(1.00)
PLCG1 11 (1%) 785 0.641
(1.00) 		0.928
(1.00) 		0.871
(1.00) 		0.842
(1.00) 		0.0114
(0.177) 		0.21
(0.857) 		0.543
(1.00) 		1
(1.00) 		0.573
(1.00) 		0.269
(0.952) 		0.0263
(0.29) 		0.0655
(0.487) 		0.0545
(0.435) 		0.15
(0.775)
RBPJ 7 (1%) 789 0.108
(0.652) 		0.0397
(0.377) 		0.381
(1.00) 		0.00677
(0.123) 		0.0269
(0.291) 		0.142
(0.749) 		0.329
(1.00) 		0.0287
(0.301) 		0.118
(0.67) 		0.444
(1.00)
RPL5 10 (1%) 786 0.381
(1.00) 		0.51
(1.00) 		0.869
(1.00) 		0.469
(1.00) 		0.261
(0.952) 		0.014
(0.194) 		0.515
(1.00) 		0.803
(1.00) 		0.0223
(0.264) 		0.188
(0.848) 		0.0894
(0.586) 		0.0527
(0.428) 		1
(1.00) 		0.51
(1.00)
BRAF 11 (1%) 785 0.766
(1.00) 		0.713
(1.00) 		0.317
(0.988) 		0.0288
(0.301) 		0.411
(1.00) 		0.00025
(0.00734) 		0.413
(1.00) 		0.291
(0.971) 		0.0499
(0.427) 		0.36
(1.00) 		0.263
(0.952) 		0.0902
(0.586) 		0.0632
(0.478) 		0.196
(0.848)
TRERF1 7 (1%) 789 0.307
(0.985) 		0.861
(1.00) 		0.791
(1.00) 		0.772
(1.00) 		1
(1.00) 		0.0182
(0.233) 		0.387
(1.00) 		0.759
(1.00) 		0.104
(0.636) 		0.355
(1.00)
SETD2 13 (2%) 783 0.00538
(0.103) 		0.35
(1.00) 		0.459
(1.00) 		1
(1.00) 		0.624
(1.00) 		0.176
(0.832) 		1
(1.00) 		0.522
(1.00) 		0.108
(0.652) 		0.383
(1.00) 		0.602
(1.00) 		0.091
(0.586) 		0.854
(1.00) 		0.379
(1.00)
DSP 21 (3%) 775 0.489
(1.00) 		0.962
(1.00) 		0.572
(1.00) 		0.0719
(0.512) 		0.0708
(0.511) 		0.0453
(0.412) 		0.34
(1.00) 		0.587
(1.00) 		0.672
(1.00) 		0.728
(1.00) 		0.712
(1.00) 		0.0163
(0.219) 		0.914
(1.00) 		0.55
(1.00)
KTELC1 5 (1%) 791 0.2
(0.848) 		0.296
(0.971) 		1
(1.00) 		0.38
(1.00) 		0.633
(1.00) 		0.194
(0.848) 		0.116
(0.669) 		0.00699
(0.125) 		1
(1.00) 		0.109
(0.654)
TLR6 8 (1%) 788 0.247
(0.932) 		0.0479
(0.42) 		0.431
(1.00) 		0.294
(0.971) 		0.125
(0.687) 		0.00824
(0.139) 		1
(1.00) 		1
(1.00) 		0.334
(1.00) 		0.573
(1.00) 		0.278
(0.954) 		0.232
(0.9) 		0.412
(1.00) 		0.512
(1.00)
ACADS 5 (1%) 791 0.416
(1.00) 		0.35
(1.00) 		0.34
(1.00) 		0.793
(1.00) 		0.00812
(0.138) 		0.0464
(0.412)
ZDHHC4 4 (1%) 792 0.162
(0.804) 		1
(1.00) 		0.184
(0.848) 		0.0124
(0.186) 		1
(1.00) 		0.629
(1.00)
GRHL3 8 (1%) 788 0.913
(1.00) 		1
(1.00) 		1
(1.00) 		0.446
(1.00) 		0.166
(0.808) 		0.0798
(0.552) 		0.75
(1.00) 		0.639
(1.00) 		0.0225
(0.264) 		0.443
(1.00) 		0.589
(1.00) 		0.0133
(0.189) 		0.163
(0.804) 		0.236
(0.905)
RASGRF2 6 (1%) 790 0.696
(1.00) 		0.209
(0.857) 		1
(1.00) 		1
(1.00) 		0.335
(1.00) 		0.67
(1.00) 		0.0808
(0.557) 		0.0133
(0.189) 		0.839
(1.00) 		0.635
(1.00)
LGALS13 4 (1%) 792 1
(1.00) 		0.0176
(0.229) 		1
(1.00) 		0.782
(1.00) 		0.0486
(0.42) 		0.313
(0.985) 		0.11
(0.655) 		0.224
(0.884)
QKI 6 (1%) 790 0.266
(0.952) 		0.059
(0.457) 		0.764
(1.00) 		1
(1.00) 		0.00734
(0.13) 		0.313
(0.985) 		1
(1.00) 		0.569
(1.00) 		0.644
(1.00) 		0.272
(0.952)
MYT1 6 (1%) 790 0.137
(0.738) 		0.267
(0.952) 		0.879
(1.00) 		0.018
(0.232) 		0.427
(1.00) 		0.755
(1.00) 		0.451
(1.00) 		0.942
(1.00)
PASD1 8 (1%) 788 0.286
(0.969) 		0.00768
(0.133) 		0.522
(1.00) 		0.682
(1.00) 		0.9
(1.00) 		0.897
(1.00) 		0.11
(0.655) 		0.312
(0.985) 		0.914
(1.00) 		0.423
(1.00) 		0.0755
(0.529) 		0.758
(1.00)
FMR1 5 (1%) 791 0.199
(0.848) 		0.778
(1.00) 		0.748
(1.00) 		1
(1.00) 		0.334
(1.00) 		0.00189
(0.0443) 		0.243
(0.92) 		0.355
(1.00) 		0.334
(1.00) 		1
(1.00)
SOX13 5 (1%) 791 0.779
(1.00) 		1
(1.00) 		0.112
(0.662) 		0.0124
(0.186) 		0.541
(1.00) 		1
(1.00) 		0.401
(1.00) 		1
(1.00)
WDR90 9 (1%) 787 0.153
(0.78) 		0.364
(1.00) 		0.00944
(0.152) 		0.56
(1.00) 		0.366
(1.00) 		0.509
(1.00) 		0.708
(1.00) 		0.114
(0.669) 		0.0425
(0.396) 		0.387
(1.00) 		0.52
(1.00) 		0.794
(1.00) 		0.207
(0.857) 		1
(1.00)
NKPD1 3 (0%) 793 0.0143
(0.196) 		0.191
(0.848) 		0.431
(1.00) 		0.19
(0.848) 		1
(1.00) 		0.38
(1.00) 		0.678
(1.00) 		0.793
(1.00) 		0.207
(0.857) 		0.778
(1.00)
TP63 9 (1%) 787 1
(1.00) 		0.733
(1.00) 		0.403
(1.00) 		0.646
(1.00) 		0.368
(1.00) 		0.0618
(0.471) 		0.0124
(0.186) 		0.273
(0.952) 		0.0426
(0.396) 		0.0576
(0.453) 		0.234
(0.904) 		0.429
(1.00) 		0.0637
(0.479) 		0.265
(0.952)
NKX2-2 6 (1%) 790 0.136
(0.736) 		0.647
(1.00) 		0.787
(1.00) 		0.885
(1.00) 		0.389
(1.00) 		0.0187
(0.237) 		0.802
(1.00) 		1
(1.00) 		0.0692
(0.505) 		0.888
(1.00)
PRKCD 3 (0%) 793 0.17
(0.812) 		0.0822
(0.562) 		0.164
(0.805) 		1
(1.00) 		0.00418
(0.0835)
LRRC55 9 (1%) 787 0.375
(1.00) 		0.537
(1.00) 		0.334
(1.00) 		0.868
(1.00) 		0.161
(0.802) 		0.249
(0.934) 		1
(1.00) 		0.542
(1.00) 		0.842
(1.00) 		0.696
(1.00) 		0.0135
(0.19) 		0.794
(1.00) 		0.208
(0.857) 		1
(1.00)
WDR63 9 (1%) 787 0.0956
(0.603) 		0.601
(1.00) 		0.675
(1.00) 		0.139
(0.742) 		0.165
(0.806) 		0.071
(0.511) 		0.876
(1.00) 		0.299
(0.974) 		0.0119
(0.182) 		0.0301
(0.311) 		0.912
(1.00) 		0.0268
(0.291) 		1
(1.00) 		0.432
(1.00)
TCF12 19 (2%) 777 1
(1.00) 		0.481
(1.00) 		0.645
(1.00) 		0.257
(0.952) 		0.221
(0.884) 		0.796
(1.00) 		0.738
(1.00) 		0.383
(1.00) 		0.13
(0.71) 		0.294
(0.971) 		0.696
(1.00) 		0.517
(1.00) 		1
(1.00) 		0.514
(1.00)
STK19 11 (1%) 785 0.589
(1.00) 		0.473
(1.00) 		0.119
(0.672) 		0.629
(1.00) 		0.351
(1.00) 		0.864
(1.00) 		0.167
(0.809) 		0.544
(1.00) 		0.923
(1.00) 		0.843
(1.00)
GAGE2A 8 (1%) 788 0.322
(0.998) 		0.667
(1.00) 		0.825
(1.00) 		0.288
(0.971) 		0.905
(1.00) 		0.612
(1.00) 		0.656
(1.00) 		0.903
(1.00) 		0.822
(1.00) 		0.923
(1.00)
ZNF709 6 (1%) 790 1
(1.00) 		1
(1.00) 		0.872
(1.00) 		0.641
(1.00) 		0.86
(1.00) 		0.869
(1.00) 		1
(1.00) 		0.683
(1.00) 		0.273
(0.952) 		1
(1.00)
IRS4 10 (1%) 786 0.116
(0.669) 		1
(1.00) 		0.0523
(0.428) 		0.121
(0.676) 		0.77
(1.00) 		0.693
(1.00) 		0.466
(1.00) 		0.706
(1.00) 		0.671
(1.00) 		0.238
(0.907) 		0.413
(1.00) 		0.691
(1.00) 		0.268
(0.952) 		1
(1.00)
NKD2 4 (1%) 792 1
(1.00) 		1
(1.00) 		0.397
(1.00) 		1
(1.00) 		0.368
(1.00) 		1
(1.00) 		1
(1.00) 		0.837
(1.00)
MED9 3 (0%) 793 1
(1.00) 		0.472
(1.00) 		0.0351
(0.35) 		0.265
(0.952) 		0.296
(0.971) 		1
(1.00) 		0.879
(1.00) 		0.796
(1.00) 		0.653
(1.00) 		0.51
(1.00)
HTRA2 5 (1%) 791 0.2
(0.848) 		0.41
(1.00) 		0.28
(0.954) 		0.836
(1.00) 		0.863
(1.00) 		0.868
(1.00) 		0.348
(1.00) 		0.727
(1.00) 		0.555
(1.00) 		0.468
(1.00)
BCOR 22 (3%) 774 0.64
(1.00) 		0.363
(1.00) 		0.101
(0.631) 		0.604
(1.00) 		1
(1.00) 		0.653
(1.00) 		0.441
(1.00) 		0.889
(1.00) 		0.277
(0.954) 		0.364
(1.00) 		0.792
(1.00) 		0.584
(1.00) 		0.719
(1.00) 		0.949
(1.00)
DDX5 9 (1%) 787 0.211
(0.862) 		1
(1.00) 		0.538
(1.00) 		0.445
(1.00) 		1
(1.00) 		0.677
(1.00) 		0.465
(1.00) 		0.565
(1.00) 		0.88
(1.00) 		0.589
(1.00) 		0.263
(0.952) 		0.441
(1.00) 		0.0276
(0.296) 		0.316
(0.987)
KDR 13 (2%) 783 0.205
(0.854) 		0.657
(1.00) 		0.278
(0.954) 		0.511
(1.00) 		0.191
(0.848) 		0.0369
(0.358) 		0.784
(1.00) 		0.0952
(0.602) 		0.102
(0.632) 		0.672
(1.00) 		0.263
(0.952) 		0.023
(0.266) 		0.239
(0.911) 		0.198
(0.848)
NRAS 5 (1%) 791 0.669
(1.00) 		0.252
(0.938) 		0.21
(0.857) 		0.855
(1.00) 		0.109
(0.654) 		0.312
(0.985) 		0.305
(0.984) 		0.682
(1.00) 		0.333
(1.00) 		0.759
(1.00)
TPX2 7 (1%) 789 0.731
(1.00) 		0.643
(1.00) 		0.699
(1.00) 		1
(1.00) 		1
(1.00) 		0.591
(1.00) 		0.492
(1.00) 		0.0713
(0.512) 		0.169
(0.81) 		0.316
(0.987)
EMG1 6 (1%) 790 0.135
(0.733) 		0.372
(1.00) 		0.226
(0.888) 		0.774
(1.00) 		0.143
(0.752) 		0.0965
(0.607) 		0.408
(1.00) 		0.432
(1.00) 		0.525
(1.00) 		0.725
(1.00)
MX2 9 (1%) 787 0.601
(1.00) 		0.84
(1.00) 		0.448
(1.00) 		0.446
(1.00) 		0.364
(1.00) 		0.719
(1.00) 		0.876
(1.00) 		0.404
(1.00) 		1
(1.00) 		1
(1.00) 		0.367
(1.00) 		1
(1.00) 		1
(1.00) 		0.638
(1.00)
MYST4 12 (2%) 784 0.113
(0.665) 		0.101
(0.631) 		0.0826
(0.563) 		0.276
(0.954) 		0.412
(1.00) 		0.201
(0.848) 		0.204
(0.854) 		1
(1.00) 		0.0636
(0.479) 		0.612
(1.00)
SRPX 4 (1%) 792 0.65
(1.00) 		0.283
(0.962) 		0.554
(1.00) 		0.683
(1.00) 		0.557
(1.00) 		0.57
(1.00) 		0.274
(0.952) 		0.198
(0.848) 		0.393
(1.00) 		0.063
(0.478)
TNRC18 11 (1%) 785 0.294
(0.971) 		0.393
(1.00) 		0.61
(1.00) 		0.546
(1.00) 		0.217
(0.876) 		0.641
(1.00) 		0.678
(1.00) 		0.377
(1.00) 		0.821
(1.00) 		0.58
(1.00)
SLC6A3 12 (2%) 784 0.62
(1.00) 		0.697
(1.00) 		0.396
(1.00) 		1
(1.00) 		0.597
(1.00) 		0.88
(1.00) 		0.107
(0.65) 		0.0658
(0.487) 		1
(1.00) 		0.674
(1.00) 		0.174
(0.825) 		0.507
(1.00) 		0.702
(1.00) 		0.537
(1.00)
ZNF292 17 (2%) 779 0.477
(1.00) 		0.223
(0.884) 		0.396
(1.00) 		0.312
(0.985) 		0.251
(0.938) 		0.169
(0.81) 		0.363
(1.00) 		0.799
(1.00) 		0.156
(0.793) 		0.0867
(0.578) 		0.426
(1.00) 		0.293
(0.971) 		0.0837
(0.568) 		0.0543
(0.435)
TMEM216 3 (0%) 793 0.313
(0.985) 		0.844
(1.00) 		0.434
(1.00) 		0.189
(0.848) 		0.296
(0.971) 		0.633
(1.00) 		0.522
(1.00) 		0.601
(1.00) 		0.305
(0.984) 		0.67
(1.00)
ARID2 13 (2%) 783 0.456
(1.00) 		0.942
(1.00) 		1
(1.00) 		0.61
(1.00) 		1
(1.00) 		0.145
(0.762) 		0.602
(1.00) 		0.343
(1.00) 		0.479
(1.00) 		0.46
(1.00)
FAM83D 5 (1%) 791 0.4
(1.00) 		0.474
(1.00) 		0.215
(0.873) 		0.785
(1.00) 		0.843
(1.00) 		0.825
(1.00) 		1
(1.00) 		0.0533
(0.43) 		1
(1.00) 		0.777
(1.00)
NEU2 8 (1%) 788 0.217
(0.876) 		0.549
(1.00) 		0.776
(1.00) 		1
(1.00) 		1
(1.00) 		0.85
(1.00) 		0.0897
(0.586) 		0.171
(0.814) 		1
(1.00) 		0.346
(1.00) 		0.305
(0.984) 		1
(1.00) 		0.457
(1.00) 		0.713
(1.00)
LUM 7 (1%) 789 0.781
(1.00) 		0.117
(0.669) 		0.72
(1.00) 		0.713
(1.00) 		0.169
(0.81) 		0.312
(0.985) 		0.698
(1.00) 		1
(1.00) 		0.398
(1.00) 		1
(1.00)
WRN 6 (1%) 790 0.446
(1.00) 		0.0487
(0.42) 		0.874
(1.00) 		0.641
(1.00) 		1
(1.00) 		0.518
(1.00) 		0.0566
(0.447) 		1
(1.00) 		0.0447
(0.409) 		0.453
(1.00)
TMEM184A 3 (0%) 793 1
(1.00) 		0.353
(1.00) 		1
(1.00) 		0.787
(1.00) 		0.202
(0.85) 		0.785
(1.00) 		0.88
(1.00) 		0.232
(0.899) 		0.412
(1.00) 		0.512
(1.00)
ZNF512B 5 (1%) 791 0.199
(0.848) 		0.85
(1.00) 		1
(1.00) 		1
(1.00) 		0.861
(1.00) 		0.34
(1.00) 		1
(1.00) 		1
(1.00) 		0.454
(1.00) 		0.245
(0.926)
PRCP 5 (1%) 791 0.185
(0.848) 		0.0466
(0.413) 		0.661
(1.00) 		0.268
(0.952) 		0.402
(1.00) 		0.49
(1.00)
DNMT3A 10 (1%) 786 0.0317
(0.322) 		1
(1.00) 		0.119
(0.672) 		0.351
(1.00) 		0.222
(0.884) 		0.0859
(0.576) 		0.481
(1.00) 		0.045
(0.411) 		0.922
(1.00) 		0.972
(1.00)
PROKR2 9 (1%) 787 0.602
(1.00) 		0.729
(1.00) 		0.719
(1.00) 		0.184
(0.848) 		0.0517
(0.428) 		0.251
(0.938) 		0.321
(0.996) 		0.483
(1.00) 		0.0904
(0.586) 		0.0401
(0.379) 		0.281
(0.957) 		0.791
(1.00) 		1
(1.00) 		0.778
(1.00)
C10ORF76 4 (1%) 792 0.651
(1.00) 		0.0949
(0.602) 		0.158
(0.794) 		0.824
(1.00) 		0.328
(1.00) 		0.0515
(0.428) 		0.411
(1.00) 		0.511
(1.00)
KRT15 8 (1%) 788 0.737
(1.00) 		0.485
(1.00) 		0.846
(1.00) 		0.838
(1.00) 		0.457
(1.00) 		1
(1.00) 		0.516
(1.00) 		0.866
(1.00) 		1
(1.00) 		1
(1.00)
G6PC 7 (1%) 789 0.732
(1.00) 		0.28
(0.954) 		0.322
(0.998) 		0.8
(1.00) 		0.799
(1.00) 		1
(1.00) 		0.428
(1.00) 		0.15
(0.775) 		0.294
(0.971) 		0.765
(1.00)
SERPING1 4 (1%) 792 0.65
(1.00) 		0.802
(1.00) 		1
(1.00) 		0.14
(0.742) 		0.297
(0.973) 		0.635
(1.00) 		0.681
(1.00) 		0.601
(1.00) 		0.41
(1.00) 		0.584
(1.00)
CPEB4 7 (1%) 789 0.31
(0.985) 		0.457
(1.00) 		0.876
(1.00) 		0.771
(1.00) 		0.801
(1.00) 		0.577
(1.00) 		0.767
(1.00) 		1
(1.00) 		0.454
(1.00) 		0.393
(1.00)
EEF1A1 8 (1%) 788 0.398
(1.00) 		0.194
(0.848) 		0.539
(1.00) 		0.446
(1.00) 		0.125
(0.687) 		0.476
(1.00) 		0.0373
(0.359) 		0.682
(1.00) 		0.223
(0.884) 		0.446
(1.00) 		0.0219
(0.264) 		0.198
(0.848) 		1
(1.00) 		0.837
(1.00)
PDHA1 6 (1%) 790 1
(1.00) 		0.544
(1.00) 		0.878
(1.00) 		0.301
(0.977) 		0.878
(1.00) 		0.883
(1.00) 		0.928
(1.00) 		0.848
(1.00) 		0.533
(1.00) 		0.398
(1.00)
FAM123C 11 (1%) 785 0.0233
(0.266) 		0.559
(1.00) 		0.848
(1.00) 		0.119
(0.671) 		0.199
(0.848) 		0.124
(0.687) 		0.71
(1.00) 		0.273
(0.952) 		0.116
(0.669) 		0.104
(0.636) 		0.0689
(0.504) 		0.264
(0.952) 		0.396
(1.00) 		0.141
(0.746)
KRAS 4 (1%) 792 0.648
(1.00) 		1
(1.00) 		1
(1.00) 		0.364
(1.00) 		1
(1.00) 		0.785
(1.00)
OAS2 4 (1%) 792 1
(1.00) 		0.702
(1.00) 		0.606
(1.00) 		0.791
(1.00) 		0.187
(0.848) 		0.272
(0.952) 		0.104
(0.636)
MAP3K1 9 (1%) 787 1
(1.00) 		0.73
(1.00) 		0.807
(1.00) 		0.645
(1.00) 		0.162
(0.803) 		0.542
(1.00) 		0.541
(1.00) 		0.455
(1.00) 		0.165
(0.806) 		0.272
(0.952) 		0.331
(1.00) 		0.0517
(0.428) 		0.207
(0.857) 		1
(1.00)
TRPV6 13 (2%) 783 0.335
(1.00) 		0.225
(0.887) 		0.191
(0.848) 		1
(1.00) 		0.45
(1.00) 		0.676
(1.00) 		0.411
(1.00) 		0.432
(1.00) 		0.0769
(0.533) 		0.506
(1.00) 		0.696
(1.00) 		0.505
(1.00) 		0.605
(1.00) 		0.495
(1.00)
MAP3K12 6 (1%) 790 0.448
(1.00) 		0.547
(1.00) 		0.626
(1.00) 		1
(1.00) 		0.448
(1.00) 		0.339
(1.00) 		0.489
(1.00) 		0.444
(1.00) 		0.166
(0.808) 		0.666
(1.00)
TLR7 10 (1%) 786 0.173
(0.82) 		0.477
(1.00) 		0.761
(1.00) 		0.672
(1.00) 		0.559
(1.00) 		0.128
(0.7) 		0.586
(1.00) 		0.588
(1.00) 		0.676
(1.00) 		0.733
(1.00) 		1
(1.00) 		0.757
(1.00) 		0.295
(0.971) 		0.355
(1.00)
TREML2 7 (1%) 789 0.0887
(0.585) 		1
(1.00) 		0.538
(1.00) 		0.812
(1.00) 		1
(1.00) 		0.801
(1.00) 		1
(1.00) 		1
(1.00) 		0.336
(1.00) 		0.669
(1.00) 		0.522
(1.00) 		0.793
(1.00) 		0.204
(0.854) 		1
(1.00)
MACC1 8 (1%) 788 0.783
(1.00) 		0.114
(0.669) 		0.182
(0.848) 		0.259
(0.952) 		0.223
(0.884) 		0.143
(0.752) 		0.0893
(0.586) 		0.189
(0.848) 		0.222
(0.884) 		0.0567
(0.447) 		0.192
(0.848) 		0.197
(0.848) 		0.841
(1.00) 		0.638
(1.00)
AOX1 8 (1%) 788 0.431
(1.00) 		0.273
(0.952) 		0.118
(0.671) 		0.185
(0.848) 		0.222
(0.884) 		0.545
(1.00) 		0.541
(1.00) 		0.885
(1.00) 		0.0923
(0.589) 		0.107
(0.65) 		0.0442
(0.406) 		0.0281
(0.297) 		0.27
(0.952) 		0.919
(1.00)
HEATR3 4 (1%) 792 0.649
(1.00) 		0.299
(0.974) 		0.777
(1.00) 		0.628
(1.00) 		0.645
(1.00) 		1
(1.00)
KRT13 6 (1%) 790 0.784
(1.00) 		0.115
(0.669) 		1
(1.00) 		0.072
(0.512) 		0.251
(0.938) 		0.543
(1.00) 		0.157
(0.794) 		0.824
(1.00) 		0.33
(1.00) 		0.0523
(0.428) 		1
(1.00) 		0.151
(0.778)
CNOT1 8 (1%) 788 0.319
(0.993) 		0.823
(1.00) 		1
(1.00) 		1
(1.00) 		0.825
(1.00) 		0.0484
(0.42) 		0.766
(1.00) 		0.691
(1.00) 		0.804
(1.00) 		0.681
(1.00)
ESR2 6 (1%) 790 0.48
(1.00) 		0.701
(1.00) 		0.781
(1.00) 		0.435
(1.00) 		1
(1.00) 		0.806
(1.00) 		1
(1.00) 		0.747
(1.00) 		0.56
(1.00) 		0.694
(1.00) 		0.189
(0.848) 		0.43
(1.00) 		1
(1.00) 		1
(1.00)
PAK1 3 (0%) 793 1
(1.00) 		0.548
(1.00) 		0.777
(1.00) 		0.631
(1.00)
SLC35A2 3 (0%) 793 1
(1.00) 		1
(1.00) 		1
(1.00)
CDKN2A 6 (1%) 790 1
(1.00) 		1
(1.00) 		0.552
(1.00) 		0.683
(1.00) 		0.292
(0.971) 		0.386
(1.00) 		0.0217
(0.264) 		0.262
(0.952) 		0.118
(0.671) 		0.76
(1.00)
TYRP1 6 (1%) 790 1
(1.00) 		0.925
(1.00) 		1
(1.00) 		0.364
(1.00) 		0.777
(1.00) 		0.388
(1.00) 		0.4
(1.00) 		0.342
(1.00) 		0.695
(1.00) 		0.36
(1.00)
CD99L2 5 (1%) 791 0.669
(1.00) 		0.2
(0.848) 		1
(1.00) 		0.834
(1.00) 		1
(1.00) 		0.739
(1.00) 		0.218
(0.877) 		1
(1.00) 		0.695
(1.00) 		0.58
(1.00)
MORN5 3 (0%) 793 0.575
(1.00) 		0.218
(0.877) 		0.481
(1.00)
NAP1L2 6 (1%) 790 1
(1.00) 		0.659
(1.00) 		0.697
(1.00) 		0.249
(0.935) 		0.861
(1.00) 		0.868
(1.00) 		1
(1.00) 		0.832
(1.00) 		1
(1.00) 		1
(1.00)
CD44 6 (1%) 790 0.698
(1.00) 		0.264
(0.952) 		0.287
(0.971) 		0.792
(1.00) 		0.697
(1.00) 		1
(1.00) 		0.0368
(0.358) 		0.682
(1.00) 		0.204
(0.854) 		0.633
(1.00) 		0.682
(1.00) 		0.233
(0.901) 		0.207
(0.857) 		1
(1.00)
OR52M1 8 (1%) 788 0.505
(1.00) 		0.605
(1.00) 		0.0886
(0.585) 		0.0605
(0.465) 		0.222
(0.884) 		0.38
(1.00) 		0.703
(1.00) 		0.776
(1.00) 		0.574
(1.00) 		0.273
(0.952) 		0.765
(1.00) 		1
(1.00) 		1
(1.00) 		0.839
(1.00)
ROBO3 5 (1%) 791 0.2
(0.848) 		0.581
(1.00) 		0.278
(0.954) 		0.457
(1.00) 		0.275
(0.954) 		0.339
(1.00) 		0.4
(1.00) 		0.287
(0.971) 		1
(1.00) 		0.927
(1.00)
MYO5A 5 (1%) 791 0.399
(1.00) 		0.0358
(0.354) 		0.382
(1.00) 		0.187
(0.848) 		0.158
(0.794) 		0.824
(1.00) 		0.764
(1.00) 		0.341
(1.00) 		0.474
(1.00) 		0.524
(1.00)
KRT3 4 (1%) 792 1
(1.00) 		1
(1.00) 		0.777
(1.00) 		0.627
(1.00) 		0.398
(1.00) 		0.696
(1.00) 		0.274
(0.952) 		0.197
(0.848) 		0.394
(1.00) 		0.213
(0.868)
GEFT 4 (1%) 792 0.185
(0.848) 		0.0459
(0.412) 		0.0226
(0.264) 		0.102
(0.632) 		0.189
(0.848) 		0.152
(0.779) 		0.651
(1.00) 		0.439
(1.00)
POM121 6 (1%) 790 0.444
(1.00) 		0.314
(0.985) 		0.279
(0.954) 		0.139
(0.742) 		0.539
(1.00) 		0.618
(1.00) 		0.592
(1.00) 		0.338
(1.00) 		0.697
(1.00) 		0.523
(1.00)
CMA1 3 (0%) 793 1
(1.00) 		0.548
(1.00) 		1
(1.00) 		1
(1.00)
PLXNA3 10 (1%) 786 0.386
(1.00) 		0.352
(1.00) 		0.0907
(0.586) 		0.52
(1.00) 		0.438
(1.00) 		0.614
(1.00) 		0.351
(1.00) 		0.23
(0.895) 		0.482
(1.00) 		0.877
(1.00)
EPS8L1 4 (1%) 792 0.65
(1.00) 		0.547
(1.00) 		0.109
(0.654) 		0.0615
(0.47) 		0.401
(1.00) 		1
(1.00)
PRG4 10 (1%) 786 0.393
(1.00) 		1
(1.00) 		0.0703
(0.511) 		0.434
(1.00) 		0.329
(1.00) 		0.194
(0.848) 		0.404
(1.00) 		0.901
(1.00) 		0.609
(1.00) 		0.72
(1.00)
RFX4 6 (1%) 790 1
(1.00) 		0.209
(0.857) 		0.279
(0.954) 		0.836
(1.00) 		1
(1.00) 		0.312
(0.985) 		0.644
(1.00) 		0.684
(1.00) 		0.334
(1.00) 		0.759
(1.00)
GFRA4 3 (0%) 793 0.572
(1.00) 		0.546
(1.00)
TNFRSF9 4 (1%) 792 0.647
(1.00) 		0.0671
(0.494) 		0.699
(1.00) 		0.57
(1.00) 		1
(1.00) 		1
(1.00) 		0.599
(1.00) 		0.793
(1.00) 		0.651
(1.00) 		0.512
(1.00)
EGR1 5 (1%) 791 0.701
(1.00) 		0.785
(1.00) 		0.24
(0.912) 		0.195
(0.848) 		1
(1.00) 		0.11
(0.655) 		0.064
(0.48) 		0.159
(0.794) 		0.823
(1.00)
FAM126B 8 (1%) 788 0.399
(1.00) 		0.0293
(0.305) 		0.644
(1.00) 		0.443
(1.00) 		0.0365
(0.358) 		0.802
(1.00) 		0.705
(1.00) 		0.771
(1.00) 		0.272
(0.952) 		0.694
(1.00) 		0.196
(0.848) 		0.197
(0.848) 		0.838
(1.00) 		0.697
(1.00)
SON 9 (1%) 787 0.536
(1.00) 		0.509
(1.00) 		0.231
(0.899) 		0.394
(1.00) 		0.837
(1.00) 		0.838
(1.00) 		0.826
(1.00) 		0.516
(1.00) 		0.643
(1.00) 		0.16
(0.797)
AMPD1 7 (1%) 789 0.361
(1.00) 		0.263
(0.952) 		0.686
(1.00) 		0.198
(0.848) 		0.47
(1.00) 		0.139
(0.742) 		0.549
(1.00) 		0.629
(1.00) 		0.353
(1.00) 		0.887
(1.00) 		0.401
(1.00) 		0.341
(1.00) 		0.161
(0.8) 		0.919
(1.00)
TNFSF9 5 (1%) 791 0.683
(1.00) 		0.311
(0.985) 		0.402
(1.00) 		0.474
(1.00) 		0.338
(1.00) 		0.449
(1.00)
MYH11 14 (2%) 782 1
(1.00) 		0.478
(1.00) 		0.0755
(0.529) 		0.516
(1.00) 		0.809
(1.00) 		0.936
(1.00) 		0.0439
(0.405) 		1
(1.00) 		0.925
(1.00) 		0.616
(1.00) 		1
(1.00) 		0.614
(1.00) 		0.587
(1.00) 		0.606
(1.00)
ANKRD36 7 (1%) 789 0.307
(0.985) 		0.0905
(0.586) 		0.707
(1.00) 		0.515
(1.00) 		0.406
(1.00) 		0.309
(0.985) 		0.737
(1.00) 		1
(1.00) 		0.895
(1.00) 		0.949
(1.00)
KLKB1 7 (1%) 789 0.732
(1.00) 		0.849
(1.00) 		0.153
(0.78) 		1
(1.00) 		1
(1.00) 		0.593
(1.00) 		0.928
(1.00) 		1
(1.00) 		0.243
(0.92) 		0.763
(1.00)
ST3GAL6 5 (1%) 791 0.403
(1.00) 		0.296
(0.971) 		0.226
(0.888) 		0.0206
(0.255) 		0.0592
(0.457) 		0.525
(1.00) 		1
(1.00) 		0.0523
(0.428) 		0.411
(1.00) 		0.149
(0.775)
HTT 5 (1%) 791 0.199
(0.848) 		0.0487
(0.42) 		0.291
(0.971) 		0.852
(1.00) 		0.169
(0.81) 		0.339
(1.00) 		0.264
(0.952) 		0.0231
(0.266) 		0.454
(1.00) 		0.714
(1.00)
ZZZ3 4 (1%) 792 1
(1.00) 		0.734
(1.00) 		1
(1.00) 		0.683
(1.00) 		0.559
(1.00) 		0.0717
(0.512) 		0.384
(1.00) 		0.429
(1.00) 		0.65
(1.00) 		0.887
(1.00)
CDA 3 (0%) 793
NPTX1 5 (1%) 791 0.0357
(0.354) 		0.178
(0.839) 		0.779
(1.00) 		0.366
(1.00) 		0.274
(0.952) 		0.824
(1.00) 		0.0919
(0.588) 		0.151
(0.778) 		0.652
(1.00) 		0.509
(1.00)
C10ORF46 3 (0%) 793 1
(1.00) 		1
(1.00) 		0.378
(1.00)
CHGB 8 (1%) 788 0.782
(1.00) 		0.618
(1.00) 		0.642
(1.00) 		0.444
(1.00) 		0.522
(1.00) 		0.609
(1.00) 		0.228
(0.891) 		0.309
(0.985) 		0.777
(1.00) 		0.39
(1.00) 		0.763
(1.00) 		0.339
(1.00) 		0.695
(1.00) 		0.263
(0.952)
MTMR12 4 (1%) 792 0.187
(0.848) 		0.0461
(0.412) 		0.0221
(0.264) 		0.103
(0.635)
CD1D 4 (1%) 792 0.878
(1.00) 		1
(1.00) 		0.644
(1.00) 		0.125
(0.687) 		0.0553
(0.44) 		0.0472
(0.415) 		0.777
(1.00) 		0.786
(1.00)
SLC2A3 5 (1%) 791 0.399
(1.00) 		0.299
(0.974) 		0.0359
(0.354) 		0.679
(1.00) 		0.159
(0.794) 		0.823
(1.00) 		0.0902
(0.586) 		0.0525
(0.428) 		1
(1.00) 		0.779
(1.00)
REXO1 8 (1%) 788 0.0526
(0.428) 		0.0704
(0.511) 		0.224
(0.886) 		0.0232
(0.266) 		0.787
(1.00) 		0.208
(0.857) 		0.539
(1.00) 		1
(1.00) 		0.913
(1.00) 		0.34
(1.00) 		0.696
(1.00) 		0.358
(1.00)
TTC30B 7 (1%) 789 0.306
(0.984) 		0.649
(1.00) 		0.434
(1.00) 		0.189
(0.848) 		0.634
(1.00) 		0.309
(0.985) 		0.0759
(0.53) 		0.665
(1.00) 		0.452
(1.00) 		0.392
(1.00)
ZMYM2 7 (1%) 789 0.308
(0.985) 		0.787
(1.00) 		0.626
(1.00) 		1
(1.00) 		0.798
(1.00) 		0.503
(1.00) 		0.122
(0.682) 		0.21
(0.857) 		0.269
(0.952) 		0.366
(1.00)
ALPK3 4 (1%) 792 0.649
(1.00) 		0.0462
(0.412) 		0.658
(1.00) 		1
(1.00)
INF2 4 (1%) 792 0.651
(1.00) 		1
(1.00) 		0.324
(1.00) 		1
(1.00) 		0.401
(1.00) 		1
(1.00) 		1
(1.00) 		0.0527
(0.428) 		1
(1.00) 		0.776
(1.00)
SGOL2 8 (1%) 788 0.413
(1.00) 		0.784
(1.00) 		0.457
(1.00) 		0.603
(1.00) 		0.734
(1.00) 		0.849
(1.00) 		0.776
(1.00) 		0.787
(1.00) 		0.714
(1.00) 		0.809
(1.00) 		0.913
(1.00) 		1
(1.00) 		0.331
(1.00) 		1
(1.00)
GPR132 6 (1%) 790 0.448
(1.00) 		0.392
(1.00) 		0.433
(1.00) 		1
(1.00) 		0.744
(1.00) 		0.869
(1.00) 		0.4
(1.00) 		0.682
(1.00) 		0.332
(1.00) 		0.577
(1.00)
ZNF334 4 (1%) 792 0.328
(1.00) 		0.885
(1.00) 		0.778
(1.00) 		0.628
(1.00) 		1
(1.00) 		0.481
(1.00) 		1
(1.00) 		0.197
(0.848) 		0.838
(1.00) 		0.578
(1.00)
RGS3 8 (1%) 788 0.739
(1.00) 		0.253
(0.94) 		0.464
(1.00) 		0.185
(0.848) 		0.8
(1.00) 		0.501
(1.00) 		0.217
(0.876) 		0.756
(1.00) 		0.293
(0.971) 		0.94
(1.00)
MYH8 21 (3%) 775 0.869
(1.00) 		0.729
(1.00) 		0.306
(0.984) 		0.0846
(0.57) 		0.48
(1.00) 		0.2
(0.848) 		0.303
(0.983) 		0.228
(0.892) 		0.265
(0.952) 		0.429
(1.00) 		0.854
(1.00) 		0.252
(0.938) 		0.838
(1.00) 		0.773
(1.00)
CYP11A1 7 (1%) 789 0.784
(1.00) 		0.893
(1.00) 		0.874
(1.00) 		0.312
(0.985) 		1
(1.00) 		0.665
(1.00) 		1
(1.00) 		0.449
(1.00) 		0.0414
(0.388) 		0.392
(1.00) 		0.913
(1.00) 		0.681
(1.00) 		0.839
(1.00) 		0.237
(0.907)
TJAP1 3 (0%) 793 0.573
(1.00) 		0.0462
(0.412)
FLNB 10 (1%) 786 0.413
(1.00) 		0.347
(1.00) 		0.201
(0.848) 		0.604
(1.00) 		0.0256
(0.285) 		0.906
(1.00) 		0.803
(1.00) 		0.708
(1.00) 		0.837
(1.00) 		0.407
(1.00) 		0.465
(1.00) 		0.787
(1.00) 		0.644
(1.00) 		0.708
(1.00)
PAN3 7 (1%) 789 0.567
(1.00) 		0.3
(0.976) 		0.598
(1.00) 		0.648
(1.00) 		0.471
(1.00) 		1
(1.00) 		0.363
(1.00) 		0.401
(1.00) 		0.489
(1.00)
TTYH3 4 (1%) 792 1
(1.00) 		0.721
(1.00) 		0.774
(1.00) 		0.787
(1.00) 		0.515
(1.00) 		0.633
(1.00) 		0.773
(1.00) 		1
(1.00) 		0.651
(1.00) 		1
(1.00)
SLFN11 5 (1%) 791 0.668
(1.00) 		1
(1.00) 		0.292
(0.971) 		0.641
(1.00) 		0.687
(1.00) 		0.481
(1.00) 		0.59
(1.00) 		0.263
(0.952) 		0.475
(1.00) 		0.761
(1.00)
CIB1 5 (1%) 791 0.667
(1.00) 		1
(1.00) 		1
(1.00) 		0.0506
(0.428) 		0.687
(1.00) 		0.314
(0.985) 		0.216
(0.874) 		0.0433
(0.401) 		0.117
(0.669) 		0.32
(0.994)
GLYAT 5 (1%) 791 0.672
(1.00) 		0.922
(1.00) 		0.553
(1.00) 		0.679
(1.00) 		0.388
(1.00) 		0.4
(1.00) 		0.194
(0.848) 		0.265
(0.952) 		0.837
(1.00) 		0.698
(1.00)
AGXT2L1 4 (1%) 792 0.651
(1.00) 		0.296
(0.972) 		0.157
(0.794) 		0.822
(1.00) 		1
(1.00) 		0.793
(1.00) 		0.41
(1.00) 		0.586
(1.00)
'IDH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.002

Table S1.  Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
IDH1 MUTATED 1 3 0 9
IDH1 WILD-TYPE 68 40 74 45

Figure S1.  Get High-res Image Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'IDH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S2.  Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
IDH1 MUTATED 0 13 0 0
IDH1 WILD-TYPE 63 37 48 79

Figure S2.  Get High-res Image Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'IDH1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.00079

Table S3.  Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
IDH1 MUTATED 0 13 1 0
IDH1 WILD-TYPE 77 80 44 60

Figure S3.  Get High-res Image Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

'IDH1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.00322 (Fisher's exact test), Q value = 0.069

Table S4.  Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
IDH1 MUTATED 13 0 1
IDH1 WILD-TYPE 125 61 75

Figure S4.  Get High-res Image Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

'IDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S5.  Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
IDH1 MUTATED 4 403 2
IDH1 WILD-TYPE 291 78 5

Figure S5.  Get High-res Image Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'IDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S6.  Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
IDH1 MUTATED 0 228 22 153
IDH1 WILD-TYPE 160 4 42 13

Figure S6.  Get High-res Image Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'IDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.27

Table S7.  Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
IDH1 MUTATED 119 123 99
IDH1 WILD-TYPE 76 63 90

Figure S7.  Get High-res Image Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

'IDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.68

Table S8.  Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
IDH1 MUTATED 114 129 98
IDH1 WILD-TYPE 90 90 49
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S9.  Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
IDH1 MUTATED 27 228 151
IDH1 WILD-TYPE 200 7 41

Figure S8.  Get High-res Image Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'IDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S10.  Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
IDH1 MUTATED 1 181 224
IDH1 WILD-TYPE 195 9 44

Figure S9.  Get High-res Image Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'IDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0011

Table S11.  Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
IDH1 MUTATED 97 73 146 78
IDH1 WILD-TYPE 39 34 37 5

Figure S10.  Get High-res Image Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'IDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S12.  Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
IDH1 MUTATED 207 152 35
IDH1 WILD-TYPE 15 32 68

Figure S11.  Get High-res Image Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S13.  Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
IDH1 MUTATED 114 153 124
IDH1 WILD-TYPE 70 9 35

Figure S12.  Get High-res Image Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S14.  Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
IDH1 MUTATED 84 129 161 17
IDH1 WILD-TYPE 6 9 27 72

Figure S13.  Get High-res Image Gene #1: 'IDH1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00087 (Fisher's exact test), Q value = 0.023

Table S15.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
TP53 MUTATED 17 19 11 22
TP53 WILD-TYPE 52 24 63 32

Figure S14.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TP53 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.00079

Table S16.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
TP53 MUTATED 16 30 7 16
TP53 WILD-TYPE 47 20 41 63

Figure S15.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.023

Table S17.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
TP53 MUTATED 12 40 10 18
TP53 WILD-TYPE 65 53 35 42

Figure S16.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

'TP53 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.85

Table S18.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
TP53 MUTATED 47 15 18
TP53 WILD-TYPE 91 46 58
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S19.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TP53 MUTATED 68 255 4
TP53 WILD-TYPE 227 226 3

Figure S17.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S20.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TP53 MUTATED 34 221 12 8
TP53 WILD-TYPE 126 11 52 158

Figure S18.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.95

Table S21.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TP53 MUTATED 90 71 82
TP53 WILD-TYPE 105 115 107
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00902 (Fisher's exact test), Q value = 0.15

Table S22.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TP53 MUTATED 100 95 48
TP53 WILD-TYPE 104 124 99

Figure S19.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S23.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TP53 MUTATED 71 155 67
TP53 WILD-TYPE 156 80 125

Figure S20.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S24.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TP53 MUTATED 44 176 73
TP53 WILD-TYPE 152 14 195

Figure S21.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S25.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TP53 MUTATED 82 70 74 18
TP53 WILD-TYPE 54 37 109 65

Figure S22.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S26.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TP53 MUTATED 133 71 40
TP53 WILD-TYPE 89 113 63

Figure S23.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.43

Table S27.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TP53 MUTATED 98 79 64
TP53 WILD-TYPE 86 83 95
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S28.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TP53 MUTATED 79 56 85 21
TP53 WILD-TYPE 11 82 103 68

Figure S24.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ATRX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00215 (Fisher's exact test), Q value = 0.049

Table S29.  Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
ATRX MUTATED 2 4 0 7
ATRX WILD-TYPE 67 39 74 47

Figure S25.  Get High-res Image Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATRX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S30.  Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
ATRX MUTATED 0 11 0 2
ATRX WILD-TYPE 63 39 48 77

Figure S26.  Get High-res Image Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ATRX MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.00654 (Fisher's exact test), Q value = 0.12

Table S31.  Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
ATRX MUTATED 2 11 3 0
ATRX WILD-TYPE 75 82 42 60

Figure S27.  Get High-res Image Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

'ATRX MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.23

Table S32.  Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
ATRX MUTATED 13 0 3
ATRX WILD-TYPE 125 61 73

Figure S28.  Get High-res Image Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

'ATRX MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S33.  Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ATRX MUTATED 5 204 1
ATRX WILD-TYPE 290 277 6

Figure S29.  Get High-res Image Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'ATRX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S34.  Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ATRX MUTATED 6 178 14 4
ATRX WILD-TYPE 154 54 50 162

Figure S30.  Get High-res Image Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'ATRX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S35.  Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ATRX MUTATED 58 58 58
ATRX WILD-TYPE 137 128 131
'ATRX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S36.  Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ATRX MUTATED 61 71 42
ATRX WILD-TYPE 143 148 105
'ATRX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S37.  Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ATRX MUTATED 25 123 55
ATRX WILD-TYPE 202 112 137

Figure S31.  Get High-res Image Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'ATRX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S38.  Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ATRX MUTATED 5 140 58
ATRX WILD-TYPE 191 50 210

Figure S32.  Get High-res Image Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'ATRX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S39.  Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ATRX MUTATED 60 60 59 12
ATRX WILD-TYPE 76 47 124 71

Figure S33.  Get High-res Image Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'ATRX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0011

Table S40.  Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ATRX MUTATED 108 58 25
ATRX WILD-TYPE 114 126 78

Figure S34.  Get High-res Image Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'ATRX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.95

Table S41.  Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ATRX MUTATED 76 60 52
ATRX WILD-TYPE 108 102 107
'ATRX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S42.  Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ATRX MUTATED 62 43 69 14
ATRX WILD-TYPE 28 95 119 75

Figure S35.  Get High-res Image Gene #3: 'ATRX MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S43.  Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
CIC MUTATED 0 109 0
CIC WILD-TYPE 295 372 7

Figure S36.  Get High-res Image Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'CIC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S44.  Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
CIC MUTATED 1 0 4 103
CIC WILD-TYPE 159 232 60 63

Figure S37.  Get High-res Image Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'CIC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.95

Table S45.  Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
CIC MUTATED 37 33 25
CIC WILD-TYPE 158 153 164
'CIC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.95

Table S46.  Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
CIC MUTATED 30 34 31
CIC WILD-TYPE 174 185 116
'CIC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S47.  Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
CIC MUTATED 2 55 52
CIC WILD-TYPE 225 180 140

Figure S38.  Get High-res Image Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'CIC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S48.  Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
CIC MUTATED 0 5 104
CIC WILD-TYPE 196 185 164

Figure S39.  Get High-res Image Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S49.  Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
CIC MUTATED 15 4 43 46
CIC WILD-TYPE 121 103 140 37

Figure S40.  Get High-res Image Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'CIC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S50.  Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
CIC MUTATED 55 51 2
CIC WILD-TYPE 167 133 101

Figure S41.  Get High-res Image Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S51.  Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
CIC MUTATED 11 61 36
CIC WILD-TYPE 173 101 123

Figure S42.  Get High-res Image Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S52.  Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
CIC MUTATED 2 62 43 1
CIC WILD-TYPE 88 76 145 88

Figure S43.  Get High-res Image Gene #4: 'CIC MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.081 (Fisher's exact test), Q value = 0.56

Table S53.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
NF1 MUTATED 11 4 4 2
NF1 WILD-TYPE 58 39 70 52
'NF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00047 (Fisher's exact test), Q value = 0.013

Table S54.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
NF1 MUTATED 14 1 1 5
NF1 WILD-TYPE 49 49 47 74

Figure S44.  Get High-res Image Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.28

Table S55.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
NF1 MUTATED 12 3 5 8
NF1 WILD-TYPE 65 90 40 52

Figure S45.  Get High-res Image Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

'NF1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S56.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
NF1 MUTATED 14 7 7
NF1 WILD-TYPE 124 54 69
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00273 (Fisher's exact test), Q value = 0.06

Table S57.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
NF1 MUTATED 33 27 2
NF1 WILD-TYPE 262 454 5

Figure S46.  Get High-res Image Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S58.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
NF1 MUTATED 24 2 13 7
NF1 WILD-TYPE 136 230 51 159

Figure S47.  Get High-res Image Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S59.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
NF1 MUTATED 13 13 15
NF1 WILD-TYPE 182 173 174
'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0011

Table S60.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
NF1 MUTATED 27 4 10
NF1 WILD-TYPE 177 215 137

Figure S48.  Get High-res Image Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.002

Table S61.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
NF1 MUTATED 28 6 10
NF1 WILD-TYPE 199 229 182

Figure S49.  Get High-res Image Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00175 (Fisher's exact test), Q value = 0.041

Table S62.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
NF1 MUTATED 24 7 13
NF1 WILD-TYPE 172 183 255

Figure S50.  Get High-res Image Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S63.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
NF1 MUTATED 9 11 9 4
NF1 WILD-TYPE 127 96 174 79
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0043

Table S64.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
NF1 MUTATED 10 6 17
NF1 WILD-TYPE 212 178 86

Figure S51.  Get High-res Image Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00502 (Fisher's exact test), Q value = 0.098

Table S65.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
NF1 MUTATED 21 6 6
NF1 WILD-TYPE 163 156 153

Figure S52.  Get High-res Image Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S66.  Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
NF1 MUTATED 1 6 7 19
NF1 WILD-TYPE 89 132 181 70

Figure S53.  Get High-res Image Gene #5: 'NF1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S67.  Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
PIK3R1 MUTATED 7 2 8 5
PIK3R1 WILD-TYPE 62 41 66 49
'PIK3R1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.85

Table S68.  Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
PIK3R1 MUTATED 7 6 6 3
PIK3R1 WILD-TYPE 56 44 42 76
'PIK3R1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.85

Table S69.  Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
PIK3R1 MUTATED 12 13 4 3
PIK3R1 WILD-TYPE 65 80 41 57
'PIK3R1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S70.  Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
PIK3R1 MUTATED 16 5 11
PIK3R1 WILD-TYPE 122 56 65
'PIK3R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.22

Table S71.  Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PIK3R1 MUTATED 26 25 2
PIK3R1 WILD-TYPE 269 456 5

Figure S54.  Get High-res Image Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'PIK3R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0018

Table S72.  Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
PIK3R1 MUTATED 21 5 1 13
PIK3R1 WILD-TYPE 139 227 63 153

Figure S55.  Get High-res Image Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'PIK3R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S73.  Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
PIK3R1 MUTATED 14 14 14
PIK3R1 WILD-TYPE 181 172 175
'PIK3R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S74.  Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
PIK3R1 MUTATED 16 15 11
PIK3R1 WILD-TYPE 188 204 136
'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.93

Table S75.  Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
PIK3R1 MUTATED 15 13 6
PIK3R1 WILD-TYPE 212 222 186
'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S76.  Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
PIK3R1 MUTATED 11 10 13
PIK3R1 WILD-TYPE 185 180 255
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0869 (Fisher's exact test), Q value = 0.58

Table S77.  Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
PIK3R1 MUTATED 6 3 5 8
PIK3R1 WILD-TYPE 130 104 178 75
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S78.  Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
PIK3R1 MUTATED 12 7 3
PIK3R1 WILD-TYPE 210 177 100
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S79.  Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
PIK3R1 MUTATED 9 7 6
PIK3R1 WILD-TYPE 175 155 153
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S80.  Gene #6: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
PIK3R1 MUTATED 3 8 9 2
PIK3R1 WILD-TYPE 87 130 179 87
'NOTCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S81.  Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
NOTCH1 MUTATED 0 42 0
NOTCH1 WILD-TYPE 295 439 7

Figure S56.  Get High-res Image Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'NOTCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S82.  Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
NOTCH1 MUTATED 1 9 0 32
NOTCH1 WILD-TYPE 159 223 64 134

Figure S57.  Get High-res Image Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'NOTCH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S83.  Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
NOTCH1 MUTATED 15 11 13
NOTCH1 WILD-TYPE 180 175 176
'NOTCH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S84.  Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
NOTCH1 MUTATED 14 15 10
NOTCH1 WILD-TYPE 190 204 137
'NOTCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S85.  Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
NOTCH1 MUTATED 1 16 25
NOTCH1 WILD-TYPE 226 219 167

Figure S58.  Get High-res Image Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'NOTCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S86.  Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
NOTCH1 MUTATED 0 6 36
NOTCH1 WILD-TYPE 196 184 232

Figure S59.  Get High-res Image Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'NOTCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0062

Table S87.  Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
NOTCH1 MUTATED 4 3 21 13
NOTCH1 WILD-TYPE 132 104 162 70

Figure S60.  Get High-res Image Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'NOTCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00404 (Fisher's exact test), Q value = 0.082

Table S88.  Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
NOTCH1 MUTATED 16 23 2
NOTCH1 WILD-TYPE 206 161 101

Figure S61.  Get High-res Image Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'NOTCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00161 (Fisher's exact test), Q value = 0.039

Table S89.  Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
NOTCH1 MUTATED 6 13 22
NOTCH1 WILD-TYPE 178 149 137

Figure S62.  Get High-res Image Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'NOTCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0037

Table S90.  Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
NOTCH1 MUTATED 3 14 24 0
NOTCH1 WILD-TYPE 87 124 164 89

Figure S63.  Get High-res Image Gene #7: 'NOTCH1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.011

Table S91.  Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
IDH2 MUTATED 0 20 0
IDH2 WILD-TYPE 295 461 7

Figure S64.  Get High-res Image Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'IDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0023

Table S92.  Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
IDH2 MUTATED 0 3 4 13
IDH2 WILD-TYPE 160 229 60 153

Figure S65.  Get High-res Image Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'IDH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S93.  Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
IDH2 MUTATED 5 8 4
IDH2 WILD-TYPE 190 178 185
'IDH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.72

Table S94.  Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
IDH2 MUTATED 7 3 7
IDH2 WILD-TYPE 197 216 140
'IDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0011

Table S95.  Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
IDH2 MUTATED 0 6 14
IDH2 WILD-TYPE 227 229 178

Figure S66.  Get High-res Image Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'IDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S96.  Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
IDH2 MUTATED 0 1 19
IDH2 WILD-TYPE 196 189 249

Figure S67.  Get High-res Image Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'IDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00917 (Fisher's exact test), Q value = 0.15

Table S97.  Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
IDH2 MUTATED 3 0 12 5
IDH2 WILD-TYPE 133 107 171 78

Figure S68.  Get High-res Image Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'IDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 7e-04 (Fisher's exact test), Q value = 0.019

Table S98.  Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
IDH2 MUTATED 5 15 0
IDH2 WILD-TYPE 217 169 103

Figure S69.  Get High-res Image Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'IDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00305 (Fisher's exact test), Q value = 0.066

Table S99.  Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
IDH2 MUTATED 1 8 11
IDH2 WILD-TYPE 183 154 148

Figure S70.  Get High-res Image Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'IDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0468 (Fisher's exact test), Q value = 0.41

Table S100.  Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
IDH2 MUTATED 2 6 12 0
IDH2 WILD-TYPE 88 132 176 89

Figure S71.  Get High-res Image Gene #8: 'IDH2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FUBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S101.  Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
FUBP1 MUTATED 0 47 0
FUBP1 WILD-TYPE 295 434 7

Figure S72.  Get High-res Image Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'FUBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S102.  Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
FUBP1 MUTATED 1 0 0 46
FUBP1 WILD-TYPE 159 232 64 120

Figure S73.  Get High-res Image Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'FUBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S103.  Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
FUBP1 MUTATED 15 16 10
FUBP1 WILD-TYPE 180 170 179
'FUBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S104.  Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
FUBP1 MUTATED 11 17 13
FUBP1 WILD-TYPE 193 202 134
'FUBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S105.  Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
FUBP1 MUTATED 1 21 25
FUBP1 WILD-TYPE 226 214 167

Figure S74.  Get High-res Image Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'FUBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S106.  Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
FUBP1 MUTATED 0 3 44
FUBP1 WILD-TYPE 196 187 224

Figure S75.  Get High-res Image Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'FUBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.00079

Table S107.  Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
FUBP1 MUTATED 6 1 22 18
FUBP1 WILD-TYPE 130 106 161 65

Figure S76.  Get High-res Image Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'FUBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 9e-04 (Fisher's exact test), Q value = 0.023

Table S108.  Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
FUBP1 MUTATED 24 22 1
FUBP1 WILD-TYPE 198 162 102

Figure S77.  Get High-res Image Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'FUBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00767 (Fisher's exact test), Q value = 0.13

Table S109.  Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
FUBP1 MUTATED 8 22 17
FUBP1 WILD-TYPE 176 140 142

Figure S78.  Get High-res Image Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'FUBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S110.  Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
FUBP1 MUTATED 0 23 24 0
FUBP1 WILD-TYPE 90 115 164 89

Figure S79.  Get High-res Image Gene #9: 'FUBP1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.34

Table S111.  Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
RB1 MUTATED 11 2 3 2
RB1 WILD-TYPE 58 41 71 52

Figure S80.  Get High-res Image Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.23

Table S112.  Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
RB1 MUTATED 5 2 0 11
RB1 WILD-TYPE 58 48 48 68

Figure S81.  Get High-res Image Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.72

Table S113.  Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
RB1 MUTATED 11 4 3 6
RB1 WILD-TYPE 66 89 42 54
'RB1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S114.  Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
RB1 MUTATED 12 6 6
RB1 WILD-TYPE 126 55 70
'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S115.  Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
RB1 MUTATED 27 2 1
RB1 WILD-TYPE 268 479 6

Figure S82.  Get High-res Image Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S116.  Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
RB1 MUTATED 12 0 1 1
RB1 WILD-TYPE 148 232 63 165

Figure S83.  Get High-res Image Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.91

Table S117.  Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
RB1 MUTATED 6 2 7
RB1 WILD-TYPE 189 184 182
'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.83

Table S118.  Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
RB1 MUTATED 9 4 2
RB1 WILD-TYPE 195 215 145
'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0026

Table S119.  Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
RB1 MUTATED 14 1 1
RB1 WILD-TYPE 213 234 191

Figure S84.  Get High-res Image Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.002

Table S120.  Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
RB1 MUTATED 13 1 2
RB1 WILD-TYPE 183 189 266

Figure S85.  Get High-res Image Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S121.  Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
RB1 MUTATED 3 1 1 1
RB1 WILD-TYPE 133 106 182 82
'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0324 (Fisher's exact test), Q value = 0.33

Table S122.  Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
RB1 MUTATED 1 1 4
RB1 WILD-TYPE 221 183 99

Figure S86.  Get High-res Image Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S123.  Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
RB1 MUTATED 3 1 2
RB1 WILD-TYPE 181 161 157
'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.93

Table S124.  Gene #10: 'RB1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
RB1 MUTATED 0 1 2 3
RB1 WILD-TYPE 90 137 186 86
'TCF12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S125.  Gene #11: 'TCF12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
TCF12 MUTATED 1 0 1 1
TCF12 WILD-TYPE 68 43 73 53
'TCF12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S126.  Gene #11: 'TCF12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
TCF12 MUTATED 1 1 1 0
TCF12 WILD-TYPE 62 49 47 79
'TCF12 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S127.  Gene #11: 'TCF12 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
TCF12 MUTATED 2 2 0 0
TCF12 WILD-TYPE 75 91 45 60
'TCF12 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.95

Table S128.  Gene #11: 'TCF12 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
TCF12 MUTATED 2 2 0
TCF12 WILD-TYPE 136 59 76
'TCF12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.88

Table S129.  Gene #11: 'TCF12 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TCF12 MUTATED 3 15 0
TCF12 WILD-TYPE 292 466 7
'TCF12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S130.  Gene #11: 'TCF12 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TCF12 MUTATED 3 7 1 6
TCF12 WILD-TYPE 157 225 63 160
'TCF12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S131.  Gene #11: 'TCF12 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TCF12 MUTATED 7 4 5
TCF12 WILD-TYPE 188 182 184
'TCF12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S132.  Gene #11: 'TCF12 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TCF12 MUTATED 8 6 2
TCF12 WILD-TYPE 196 213 145
'TCF12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.71

Table S133.  Gene #11: 'TCF12 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TCF12 MUTATED 2 9 5
TCF12 WILD-TYPE 225 226 187
'TCF12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.97

Table S134.  Gene #11: 'TCF12 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TCF12 MUTATED 2 6 8
TCF12 WILD-TYPE 194 184 260
'TCF12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S135.  Gene #11: 'TCF12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TCF12 MUTATED 4 2 5 4
TCF12 WILD-TYPE 132 105 178 79
'TCF12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S136.  Gene #11: 'TCF12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TCF12 MUTATED 8 6 1
TCF12 WILD-TYPE 214 178 102
'TCF12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S137.  Gene #11: 'TCF12 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TCF12 MUTATED 5 5 5
TCF12 WILD-TYPE 179 157 154
'TCF12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S138.  Gene #11: 'TCF12 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TCF12 MUTATED 4 3 7 1
TCF12 WILD-TYPE 86 135 181 88
'PIK3CA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S139.  Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
PIK3CA MUTATED 6 5 8 5
PIK3CA WILD-TYPE 63 38 66 49
'PIK3CA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.97

Table S140.  Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
PIK3CA MUTATED 8 6 6 4
PIK3CA WILD-TYPE 55 44 42 75
'PIK3CA MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.97

Table S141.  Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
PIK3CA MUTATED 9 10 1 6
PIK3CA WILD-TYPE 68 83 44 54
'PIK3CA MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S142.  Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
PIK3CA MUTATED 12 6 8
PIK3CA WILD-TYPE 126 55 68
'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S143.  Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PIK3CA MUTATED 26 42 1
PIK3CA WILD-TYPE 269 439 6
'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S144.  Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
PIK3CA MUTATED 21 6 3 27
PIK3CA WILD-TYPE 139 226 61 139

Figure S87.  Get High-res Image Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S145.  Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
PIK3CA MUTATED 13 20 17
PIK3CA WILD-TYPE 182 166 172
'PIK3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S146.  Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
PIK3CA MUTATED 19 15 16
PIK3CA WILD-TYPE 185 204 131
'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S147.  Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
PIK3CA MUTATED 23 16 15
PIK3CA WILD-TYPE 204 219 177
'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0368 (Fisher's exact test), Q value = 0.36

Table S148.  Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
PIK3CA MUTATED 18 8 28
PIK3CA WILD-TYPE 178 182 240

Figure S88.  Get High-res Image Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00952 (Fisher's exact test), Q value = 0.15

Table S149.  Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
PIK3CA MUTATED 5 14 13 12
PIK3CA WILD-TYPE 131 93 170 71

Figure S89.  Get High-res Image Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.039 (Fisher's exact test), Q value = 0.37

Table S150.  Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
PIK3CA MUTATED 13 16 15
PIK3CA WILD-TYPE 209 168 88

Figure S90.  Get High-res Image Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S151.  Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
PIK3CA MUTATED 17 10 17
PIK3CA WILD-TYPE 167 152 142
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00087 (Fisher's exact test), Q value = 0.023

Table S152.  Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
PIK3CA MUTATED 0 15 17 12
PIK3CA WILD-TYPE 90 123 171 77

Figure S91.  Get High-res Image Gene #12: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'STK19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S153.  Gene #13: 'STK19 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
STK19 MUTATED 3 8 0
STK19 WILD-TYPE 292 473 7
'STK19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S154.  Gene #13: 'STK19 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
STK19 MUTATED 3 4 2 1
STK19 WILD-TYPE 157 228 62 165
'STK19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.67

Table S155.  Gene #13: 'STK19 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
STK19 MUTATED 3 4 0
STK19 WILD-TYPE 192 182 189
'STK19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S156.  Gene #13: 'STK19 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
STK19 MUTATED 2 2 3
STK19 WILD-TYPE 202 217 144
'STK19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S157.  Gene #13: 'STK19 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
STK19 MUTATED 4 2 5
STK19 WILD-TYPE 223 233 187
'STK19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S158.  Gene #13: 'STK19 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
STK19 MUTATED 3 4 4
STK19 WILD-TYPE 193 186 264
'STK19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.81

Table S159.  Gene #13: 'STK19 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
STK19 MUTATED 1 4 5 0
STK19 WILD-TYPE 135 103 178 83
'STK19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S160.  Gene #13: 'STK19 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
STK19 MUTATED 3 4 3
STK19 WILD-TYPE 219 180 100
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S161.  Gene #13: 'STK19 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
STK19 MUTATED 3 4 3
STK19 WILD-TYPE 181 158 156
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S162.  Gene #13: 'STK19 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
STK19 MUTATED 1 2 5 2
STK19 WILD-TYPE 89 136 183 87
'PTEN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.67

Table S163.  Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
PTEN MUTATED 25 10 18 22
PTEN WILD-TYPE 44 33 56 32
'PTEN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0739 (Fisher's exact test), Q value = 0.52

Table S164.  Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
PTEN MUTATED 18 16 9 32
PTEN WILD-TYPE 45 34 39 47
'PTEN MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 0.29

Table S165.  Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
PTEN MUTATED 30 19 18 20
PTEN WILD-TYPE 47 74 27 40

Figure S92.  Get High-res Image Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

'PTEN MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S166.  Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
PTEN MUTATED 45 21 21
PTEN WILD-TYPE 93 40 55
'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S167.  Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PTEN MUTATED 91 16 2
PTEN WILD-TYPE 204 465 5

Figure S93.  Get High-res Image Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S168.  Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
PTEN MUTATED 47 3 6 1
PTEN WILD-TYPE 113 229 58 165

Figure S94.  Get High-res Image Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.85

Table S169.  Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
PTEN MUTATED 19 15 26
PTEN WILD-TYPE 176 171 163
'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.67

Table S170.  Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
PTEN MUTATED 29 19 12
PTEN WILD-TYPE 175 200 135
'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S171.  Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
PTEN MUTATED 62 4 3
PTEN WILD-TYPE 165 231 189

Figure S95.  Get High-res Image Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S172.  Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
PTEN MUTATED 61 4 4
PTEN WILD-TYPE 135 186 264

Figure S96.  Get High-res Image Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00376 (Fisher's exact test), Q value = 0.078

Table S173.  Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
PTEN MUTATED 12 8 3 1
PTEN WILD-TYPE 124 99 180 82

Figure S97.  Get High-res Image Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S174.  Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
PTEN MUTATED 6 1 17
PTEN WILD-TYPE 216 183 86

Figure S98.  Get High-res Image Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S175.  Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
PTEN MUTATED 20 2 2
PTEN WILD-TYPE 164 160 157

Figure S99.  Get High-res Image Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S176.  Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
PTEN MUTATED 3 3 1 17
PTEN WILD-TYPE 87 135 187 72

Figure S100.  Get High-res Image Gene #14: 'PTEN MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.25

Table S177.  Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ARID1A MUTATED 2 19 0
ARID1A WILD-TYPE 293 462 7

Figure S101.  Get High-res Image Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.26

Table S178.  Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ARID1A MUTATED 2 6 1 12
ARID1A WILD-TYPE 158 226 63 154

Figure S102.  Get High-res Image Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S179.  Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ARID1A MUTATED 9 7 4
ARID1A WILD-TYPE 186 179 185
'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S180.  Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ARID1A MUTATED 7 8 5
ARID1A WILD-TYPE 197 211 142
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.28

Table S181.  Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ARID1A MUTATED 2 12 7
ARID1A WILD-TYPE 225 223 185

Figure S103.  Get High-res Image Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00531 (Fisher's exact test), Q value = 0.1

Table S182.  Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ARID1A MUTATED 1 5 15
ARID1A WILD-TYPE 195 185 253

Figure S104.  Get High-res Image Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.99

Table S183.  Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ARID1A MUTATED 5 2 7 6
ARID1A WILD-TYPE 131 105 176 77
'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S184.  Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ARID1A MUTATED 10 8 2
ARID1A WILD-TYPE 212 176 101
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0827 (Fisher's exact test), Q value = 0.56

Table S185.  Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ARID1A MUTATED 3 10 7
ARID1A WILD-TYPE 181 152 152
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0295 (Fisher's exact test), Q value = 0.31

Table S186.  Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ARID1A MUTATED 1 11 7 1
ARID1A WILD-TYPE 89 127 181 88

Figure S105.  Get High-res Image Gene #15: 'ARID1A MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC26A3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S187.  Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
SLC26A3 MUTATED 1 1 2 2
SLC26A3 WILD-TYPE 68 42 72 52
'SLC26A3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S188.  Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
SLC26A3 MUTATED 2 1 2 1
SLC26A3 WILD-TYPE 61 49 46 78
'SLC26A3 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S189.  Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
SLC26A3 MUTATED 1 4 0 2
SLC26A3 WILD-TYPE 76 89 45 58
'SLC26A3 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S190.  Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
SLC26A3 MUTATED 4 0 3
SLC26A3 WILD-TYPE 134 61 73
'SLC26A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.17

Table S191.  Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
SLC26A3 MUTATED 9 2 0
SLC26A3 WILD-TYPE 286 479 7

Figure S106.  Get High-res Image Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'SLC26A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.26

Table S192.  Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
SLC26A3 MUTATED 5 1 0 0
SLC26A3 WILD-TYPE 155 231 64 166

Figure S107.  Get High-res Image Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'SLC26A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0988 (Fisher's exact test), Q value = 0.62

Table S193.  Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
SLC26A3 MUTATED 5 0 3
SLC26A3 WILD-TYPE 190 186 186
'SLC26A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0647 (Fisher's exact test), Q value = 0.48

Table S194.  Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
SLC26A3 MUTATED 6 2 0
SLC26A3 WILD-TYPE 198 217 147
'SLC26A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00459 (Fisher's exact test), Q value = 0.091

Table S195.  Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
SLC26A3 MUTATED 7 1 0
SLC26A3 WILD-TYPE 220 234 192

Figure S108.  Get High-res Image Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'SLC26A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00617 (Fisher's exact test), Q value = 0.11

Table S196.  Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
SLC26A3 MUTATED 6 2 0
SLC26A3 WILD-TYPE 190 188 268

Figure S109.  Get High-res Image Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'SLC26A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0458 (Fisher's exact test), Q value = 0.41

Table S197.  Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
SLC26A3 MUTATED 1 3 0 0
SLC26A3 WILD-TYPE 135 104 183 83

Figure S110.  Get High-res Image Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'SLC26A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.3

Table S198.  Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
SLC26A3 MUTATED 1 0 3
SLC26A3 WILD-TYPE 221 184 100

Figure S111.  Get High-res Image Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'SLC26A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S199.  Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
SLC26A3 MUTATED 2 1 1
SLC26A3 WILD-TYPE 182 161 158
'SLC26A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.85

Table S200.  Gene #16: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
SLC26A3 MUTATED 1 0 1 2
SLC26A3 WILD-TYPE 89 138 187 87
'NIPBL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.3

Table S201.  Gene #17: 'NIPBL MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
NIPBL MUTATED 2 18 0
NIPBL WILD-TYPE 293 463 7

Figure S112.  Get High-res Image Gene #17: 'NIPBL MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'NIPBL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0062

Table S202.  Gene #17: 'NIPBL MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
NIPBL MUTATED 3 2 0 14
NIPBL WILD-TYPE 157 230 64 152

Figure S113.  Get High-res Image Gene #17: 'NIPBL MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'NIPBL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.9

Table S203.  Gene #17: 'NIPBL MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
NIPBL MUTATED 6 2 7
NIPBL WILD-TYPE 189 184 182
'NIPBL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S204.  Gene #17: 'NIPBL MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
NIPBL MUTATED 6 7 2
NIPBL WILD-TYPE 198 212 145
'NIPBL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0527 (Fisher's exact test), Q value = 0.43

Table S205.  Gene #17: 'NIPBL MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
NIPBL MUTATED 3 12 4
NIPBL WILD-TYPE 224 223 188
'NIPBL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0481 (Fisher's exact test), Q value = 0.42

Table S206.  Gene #17: 'NIPBL MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
NIPBL MUTATED 2 4 13
NIPBL WILD-TYPE 194 186 255

Figure S114.  Get High-res Image Gene #17: 'NIPBL MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'NIPBL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S207.  Gene #17: 'NIPBL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
NIPBL MUTATED 5 4 4 5
NIPBL WILD-TYPE 131 103 179 78
'NIPBL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.82

Table S208.  Gene #17: 'NIPBL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
NIPBL MUTATED 12 4 2
NIPBL WILD-TYPE 210 180 101
'NIPBL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.18

Table S209.  Gene #17: 'NIPBL MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
NIPBL MUTATED 3 12 3
NIPBL WILD-TYPE 181 150 156

Figure S115.  Get High-res Image Gene #17: 'NIPBL MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'NIPBL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0592 (Fisher's exact test), Q value = 0.46

Table S210.  Gene #17: 'NIPBL MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
NIPBL MUTATED 3 10 4 1
NIPBL WILD-TYPE 87 128 184 88
'ZMIZ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S211.  Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
ZMIZ1 MUTATED 2 1 0 1
ZMIZ1 WILD-TYPE 67 42 74 53
'ZMIZ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S212.  Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
ZMIZ1 MUTATED 1 1 0 2
ZMIZ1 WILD-TYPE 62 49 48 77
'ZMIZ1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S213.  Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
ZMIZ1 MUTATED 2 2 0 0
ZMIZ1 WILD-TYPE 75 91 45 60
'ZMIZ1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S214.  Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
ZMIZ1 MUTATED 1 1 2
ZMIZ1 WILD-TYPE 137 60 74
'ZMIZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.91

Table S215.  Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ZMIZ1 MUTATED 2 10 0
ZMIZ1 WILD-TYPE 293 471 7
'ZMIZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S216.  Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ZMIZ1 MUTATED 2 2 0 5
ZMIZ1 WILD-TYPE 158 230 64 161
'ZMIZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.48

Table S217.  Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ZMIZ1 MUTATED 3 7 1
ZMIZ1 WILD-TYPE 192 179 188
'ZMIZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.67

Table S218.  Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ZMIZ1 MUTATED 3 2 6
ZMIZ1 WILD-TYPE 201 217 141
'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S219.  Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ZMIZ1 MUTATED 3 5 3
ZMIZ1 WILD-TYPE 224 230 189
'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S220.  Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ZMIZ1 MUTATED 1 4 6
ZMIZ1 WILD-TYPE 195 186 262
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S221.  Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ZMIZ1 MUTATED 1 2 3 3
ZMIZ1 WILD-TYPE 135 105 180 80
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S222.  Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ZMIZ1 MUTATED 5 2 2
ZMIZ1 WILD-TYPE 217 182 101
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.24

Table S223.  Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ZMIZ1 MUTATED 0 6 3
ZMIZ1 WILD-TYPE 184 156 156

Figure S116.  Get High-res Image Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S224.  Gene #18: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ZMIZ1 MUTATED 0 4 4 1
ZMIZ1 WILD-TYPE 90 134 184 88
'NUDT11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.22

Table S225.  Gene #19: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
NUDT11 MUTATED 0 11 0
NUDT11 WILD-TYPE 295 470 7

Figure S117.  Get High-res Image Gene #19: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'NUDT11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S226.  Gene #19: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
NUDT11 MUTATED 1 6 0 4
NUDT11 WILD-TYPE 159 226 64 162
'NUDT11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S227.  Gene #19: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
NUDT11 MUTATED 5 2 4
NUDT11 WILD-TYPE 190 184 185
'NUDT11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.97

Table S228.  Gene #19: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
NUDT11 MUTATED 6 2 3
NUDT11 WILD-TYPE 198 217 144
'NUDT11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S229.  Gene #19: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
NUDT11 MUTATED 2 6 3
NUDT11 WILD-TYPE 225 229 189
'NUDT11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.21

Table S230.  Gene #19: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
NUDT11 MUTATED 0 7 4
NUDT11 WILD-TYPE 196 183 264

Figure S118.  Get High-res Image Gene #19: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'NUDT11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.29

Table S231.  Gene #19: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
NUDT11 MUTATED 1 4 1 4
NUDT11 WILD-TYPE 135 103 182 79

Figure S119.  Get High-res Image Gene #19: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'NUDT11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S232.  Gene #19: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
NUDT11 MUTATED 5 3 2
NUDT11 WILD-TYPE 217 181 101
'NUDT11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.81

Table S233.  Gene #19: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
NUDT11 MUTATED 1 5 4
NUDT11 WILD-TYPE 183 157 155
'NUDT11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.97

Table S234.  Gene #19: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
NUDT11 MUTATED 1 5 4 0
NUDT11 WILD-TYPE 89 133 184 89
'GAGE2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S235.  Gene #20: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
GAGE2A MUTATED 1 7 0
GAGE2A WILD-TYPE 294 474 7
'GAGE2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S236.  Gene #20: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
GAGE2A MUTATED 1 4 0 3
GAGE2A WILD-TYPE 159 228 64 163
'GAGE2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S237.  Gene #20: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
GAGE2A MUTATED 2 3 3
GAGE2A WILD-TYPE 193 183 186
'GAGE2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.97

Table S238.  Gene #20: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
GAGE2A MUTATED 4 1 3
GAGE2A WILD-TYPE 200 218 144
'GAGE2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S239.  Gene #20: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
GAGE2A MUTATED 2 3 3
GAGE2A WILD-TYPE 225 232 189
'GAGE2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S240.  Gene #20: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
GAGE2A MUTATED 1 3 4
GAGE2A WILD-TYPE 195 187 264
'GAGE2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S241.  Gene #20: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
GAGE2A MUTATED 1 3 3 1
GAGE2A WILD-TYPE 135 104 180 82
'GAGE2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S242.  Gene #20: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
GAGE2A MUTATED 3 3 2
GAGE2A WILD-TYPE 219 181 101
'GAGE2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S243.  Gene #20: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
GAGE2A MUTATED 2 3 3
GAGE2A WILD-TYPE 182 159 156
'GAGE2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S244.  Gene #20: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
GAGE2A MUTATED 2 2 3 1
GAGE2A WILD-TYPE 88 136 185 88
'CREBZF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.36

Table S245.  Gene #21: 'CREBZF MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
CREBZF MUTATED 0 9 0
CREBZF WILD-TYPE 295 472 7

Figure S120.  Get High-res Image Gene #21: 'CREBZF MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'CREBZF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.017

Table S246.  Gene #21: 'CREBZF MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
CREBZF MUTATED 0 0 0 7
CREBZF WILD-TYPE 160 232 64 159

Figure S121.  Get High-res Image Gene #21: 'CREBZF MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'CREBZF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S247.  Gene #21: 'CREBZF MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
CREBZF MUTATED 1 4 3
CREBZF WILD-TYPE 194 182 186
'CREBZF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S248.  Gene #21: 'CREBZF MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
CREBZF MUTATED 1 4 3
CREBZF WILD-TYPE 203 215 144
'CREBZF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.26

Table S249.  Gene #21: 'CREBZF MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
CREBZF MUTATED 1 1 6
CREBZF WILD-TYPE 226 234 186

Figure S122.  Get High-res Image Gene #21: 'CREBZF MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'CREBZF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0687 (Fisher's exact test), Q value = 0.5

Table S250.  Gene #21: 'CREBZF MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
CREBZF MUTATED 0 2 6
CREBZF WILD-TYPE 196 188 262
'CREBZF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.85

Table S251.  Gene #21: 'CREBZF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
CREBZF MUTATED 0 1 5 1
CREBZF WILD-TYPE 136 106 178 82
'CREBZF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.19

Table S252.  Gene #21: 'CREBZF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
CREBZF MUTATED 0 6 1
CREBZF WILD-TYPE 222 178 102

Figure S123.  Get High-res Image Gene #21: 'CREBZF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'CREBZF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.67

Table S253.  Gene #21: 'CREBZF MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
CREBZF MUTATED 1 1 5
CREBZF WILD-TYPE 183 161 154
'CREBZF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0532 (Fisher's exact test), Q value = 0.43

Table S254.  Gene #21: 'CREBZF MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
CREBZF MUTATED 0 0 6 1
CREBZF WILD-TYPE 90 138 182 88
'PLCG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S255.  Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
PLCG1 MUTATED 2 0 1 2
PLCG1 WILD-TYPE 67 43 73 52
'PLCG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S256.  Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
PLCG1 MUTATED 2 1 1 1
PLCG1 WILD-TYPE 61 49 47 78
'PLCG1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S257.  Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
PLCG1 MUTATED 2 1 1 1
PLCG1 WILD-TYPE 75 92 44 59
'PLCG1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S258.  Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
PLCG1 MUTATED 2 1 2
PLCG1 WILD-TYPE 136 60 74
'PLCG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.18

Table S259.  Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PLCG1 MUTATED 9 2 0
PLCG1 WILD-TYPE 286 479 7

Figure S124.  Get High-res Image Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'PLCG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.86

Table S260.  Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
PLCG1 MUTATED 4 1 1 1
PLCG1 WILD-TYPE 156 231 63 165
'PLCG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S261.  Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
PLCG1 MUTATED 1 1 3
PLCG1 WILD-TYPE 194 185 186
'PLCG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S262.  Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
PLCG1 MUTATED 2 2 1
PLCG1 WILD-TYPE 202 217 146
'PLCG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S263.  Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
PLCG1 MUTATED 4 2 1
PLCG1 WILD-TYPE 223 233 191
'PLCG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.95

Table S264.  Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
PLCG1 MUTATED 4 2 1
PLCG1 WILD-TYPE 192 188 267
'PLCG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.29

Table S265.  Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
PLCG1 MUTATED 5 0 1 0
PLCG1 WILD-TYPE 131 107 182 83

Figure S125.  Get High-res Image Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'PLCG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0655 (Fisher's exact test), Q value = 0.49

Table S266.  Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
PLCG1 MUTATED 3 0 3
PLCG1 WILD-TYPE 219 184 100
'PLCG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.44

Table S267.  Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
PLCG1 MUTATED 5 1 0
PLCG1 WILD-TYPE 179 161 159
'PLCG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.78

Table S268.  Gene #22: 'PLCG1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
PLCG1 MUTATED 0 2 1 3
PLCG1 WILD-TYPE 90 136 187 86
'STAG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S269.  Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
STAG2 MUTATED 4 3 1 2
STAG2 WILD-TYPE 65 40 73 52
'STAG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S270.  Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
STAG2 MUTATED 2 1 3 4
STAG2 WILD-TYPE 61 49 45 75
'STAG2 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S271.  Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
STAG2 MUTATED 4 5 2 1
STAG2 WILD-TYPE 73 88 43 59
'STAG2 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S272.  Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
STAG2 MUTATED 5 2 5
STAG2 WILD-TYPE 133 59 71
'STAG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0031

Table S273.  Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
STAG2 MUTATED 13 2 1
STAG2 WILD-TYPE 282 479 6

Figure S126.  Get High-res Image Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'STAG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00066 (Fisher's exact test), Q value = 0.018

Table S274.  Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
STAG2 MUTATED 8 1 0 0
STAG2 WILD-TYPE 152 231 64 166

Figure S127.  Get High-res Image Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'STAG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S275.  Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
STAG2 MUTATED 3 4 3
STAG2 WILD-TYPE 192 182 186
'STAG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0592 (Fisher's exact test), Q value = 0.46

Table S276.  Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
STAG2 MUTATED 7 1 2
STAG2 WILD-TYPE 197 218 145
'STAG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0028

Table S277.  Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
STAG2 MUTATED 10 0 1
STAG2 WILD-TYPE 217 235 191

Figure S128.  Get High-res Image Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'STAG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00113 (Fisher's exact test), Q value = 0.028

Table S278.  Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
STAG2 MUTATED 9 1 1
STAG2 WILD-TYPE 187 189 267

Figure S129.  Get High-res Image Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'STAG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S279.  Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
STAG2 MUTATED 1 2 1 0
STAG2 WILD-TYPE 135 105 182 83
'STAG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.19

Table S280.  Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
STAG2 MUTATED 0 1 3
STAG2 WILD-TYPE 222 183 100

Figure S130.  Get High-res Image Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'STAG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S281.  Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
STAG2 MUTATED 2 0 2
STAG2 WILD-TYPE 182 162 157
'STAG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.91

Table S282.  Gene #23: 'STAG2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
STAG2 MUTATED 0 0 2 2
STAG2 WILD-TYPE 90 138 186 87
'SEMG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S283.  Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
SEMG1 MUTATED 1 1 4 2
SEMG1 WILD-TYPE 68 42 70 52
'SEMG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.83

Table S284.  Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
SEMG1 MUTATED 0 2 1 5
SEMG1 WILD-TYPE 63 48 47 74
'SEMG1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S285.  Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
SEMG1 MUTATED 2 4 1 1
SEMG1 WILD-TYPE 75 89 44 59
'SEMG1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S286.  Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
SEMG1 MUTATED 4 2 2
SEMG1 WILD-TYPE 134 59 74
'SEMG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00099 (Fisher's exact test), Q value = 0.025

Table S287.  Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
SEMG1 MUTATED 10 1 0
SEMG1 WILD-TYPE 285 480 7

Figure S131.  Get High-res Image Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'SEMG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.19

Table S288.  Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
SEMG1 MUTATED 4 0 0 0
SEMG1 WILD-TYPE 156 232 64 166

Figure S132.  Get High-res Image Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'SEMG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S289.  Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
SEMG1 MUTATED 1 0 2
SEMG1 WILD-TYPE 194 186 187
'SEMG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S290.  Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
SEMG1 MUTATED 1 2 0
SEMG1 WILD-TYPE 203 217 147
'SEMG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0023 (Fisher's exact test), Q value = 0.052

Table S291.  Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
SEMG1 MUTATED 6 0 0
SEMG1 WILD-TYPE 221 235 192

Figure S133.  Get High-res Image Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'SEMG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00916 (Fisher's exact test), Q value = 0.15

Table S292.  Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
SEMG1 MUTATED 5 1 0
SEMG1 WILD-TYPE 191 189 268

Figure S134.  Get High-res Image Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'SEMG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.85

Table S293.  Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
SEMG1 MUTATED 1 2 0 0
SEMG1 WILD-TYPE 135 105 183 83
'SEMG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.78

Table S294.  Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
SEMG1 MUTATED 1 0 2
SEMG1 WILD-TYPE 221 184 101
'SEMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S295.  Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
SEMG1 MUTATED 2 0 1
SEMG1 WILD-TYPE 182 162 158
'SEMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S296.  Gene #24: 'SEMG1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
SEMG1 MUTATED 1 0 1 1
SEMG1 WILD-TYPE 89 138 187 88
'ZNF709 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S297.  Gene #25: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ZNF709 MUTATED 2 4 0
ZNF709 WILD-TYPE 293 477 7
'ZNF709 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S298.  Gene #25: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ZNF709 MUTATED 1 2 0 2
ZNF709 WILD-TYPE 159 230 64 164
'ZNF709 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S299.  Gene #25: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ZNF709 MUTATED 2 2 1
ZNF709 WILD-TYPE 193 184 188
'ZNF709 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S300.  Gene #25: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ZNF709 MUTATED 2 1 2
ZNF709 WILD-TYPE 202 218 145
'ZNF709 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S301.  Gene #25: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ZNF709 MUTATED 1 2 2
ZNF709 WILD-TYPE 226 233 190
'ZNF709 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S302.  Gene #25: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ZNF709 MUTATED 1 2 2
ZNF709 WILD-TYPE 195 188 266
'ZNF709 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S303.  Gene #25: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ZNF709 MUTATED 1 1 2 0
ZNF709 WILD-TYPE 135 106 181 83
'ZNF709 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S304.  Gene #25: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ZNF709 MUTATED 1 2 1
ZNF709 WILD-TYPE 221 182 102
'ZNF709 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.95

Table S305.  Gene #25: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ZNF709 MUTATED 3 0 1
ZNF709 WILD-TYPE 181 162 158
'ZNF709 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S306.  Gene #25: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ZNF709 MUTATED 1 1 2 0
ZNF709 WILD-TYPE 89 137 186 89
'MUC17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.19

Table S307.  Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
MUC17 MUTATED 10 5 1 3
MUC17 WILD-TYPE 59 38 73 51

Figure S135.  Get High-res Image Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MUC17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.85

Table S308.  Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
MUC17 MUTATED 8 1 3 7
MUC17 WILD-TYPE 55 49 45 72
'MUC17 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S309.  Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
MUC17 MUTATED 5 7 3 7
MUC17 WILD-TYPE 72 86 42 53
'MUC17 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S310.  Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
MUC17 MUTATED 10 4 8
MUC17 WILD-TYPE 128 57 68
'MUC17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.79

Table S311.  Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
MUC17 MUTATED 23 25 1
MUC17 WILD-TYPE 272 456 6
'MUC17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S312.  Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
MUC17 MUTATED 14 12 4 7
MUC17 WILD-TYPE 146 220 60 159
'MUC17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S313.  Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
MUC17 MUTATED 15 10 8
MUC17 WILD-TYPE 180 176 181
'MUC17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.95

Table S314.  Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
MUC17 MUTATED 16 9 8
MUC17 WILD-TYPE 188 210 139
'MUC17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.19

Table S315.  Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
MUC17 MUTATED 19 6 14
MUC17 WILD-TYPE 208 229 178

Figure S136.  Get High-res Image Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'MUC17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.86

Table S316.  Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
MUC17 MUTATED 15 13 11
MUC17 WILD-TYPE 181 177 257
'MUC17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.29

Table S317.  Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
MUC17 MUTATED 9 4 14 0
MUC17 WILD-TYPE 127 103 169 83

Figure S137.  Get High-res Image Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'MUC17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 0.38

Table S318.  Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
MUC17 MUTATED 6 12 9
MUC17 WILD-TYPE 216 172 94

Figure S138.  Get High-res Image Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'MUC17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.3

Table S319.  Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
MUC17 MUTATED 7 5 15
MUC17 WILD-TYPE 177 157 144

Figure S139.  Get High-res Image Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'MUC17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0616 (Fisher's exact test), Q value = 0.47

Table S320.  Gene #26: 'MUC17 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
MUC17 MUTATED 5 2 13 7
MUC17 WILD-TYPE 85 136 175 82
'PDGFRA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.19

Table S321.  Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
PDGFRA MUTATED 1 6 2 1
PDGFRA WILD-TYPE 68 37 72 53

Figure S140.  Get High-res Image Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PDGFRA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.77

Table S322.  Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
PDGFRA MUTATED 1 5 2 2
PDGFRA WILD-TYPE 62 45 46 77
'PDGFRA MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S323.  Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
PDGFRA MUTATED 4 3 2 2
PDGFRA WILD-TYPE 73 90 43 58
'PDGFRA MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.74

Table S324.  Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
PDGFRA MUTATED 9 1 1
PDGFRA WILD-TYPE 129 60 75
'PDGFRA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S325.  Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PDGFRA MUTATED 10 11 0
PDGFRA WILD-TYPE 285 470 7
'PDGFRA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.97

Table S326.  Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
PDGFRA MUTATED 6 4 0 2
PDGFRA WILD-TYPE 154 228 64 164
'PDGFRA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.77

Table S327.  Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
PDGFRA MUTATED 6 1 6
PDGFRA WILD-TYPE 189 185 183
'PDGFRA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00749 (Fisher's exact test), Q value = 0.13

Table S328.  Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
PDGFRA MUTATED 10 1 2
PDGFRA WILD-TYPE 194 218 145

Figure S141.  Get High-res Image Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

'PDGFRA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00403 (Fisher's exact test), Q value = 0.082

Table S329.  Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
PDGFRA MUTATED 12 3 1
PDGFRA WILD-TYPE 215 232 191

Figure S142.  Get High-res Image Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'PDGFRA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 0.27

Table S330.  Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
PDGFRA MUTATED 9 5 2
PDGFRA WILD-TYPE 187 185 266

Figure S143.  Get High-res Image Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'PDGFRA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.018

Table S331.  Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
PDGFRA MUTATED 1 7 0 2
PDGFRA WILD-TYPE 135 100 183 81

Figure S144.  Get High-res Image Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'PDGFRA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00147 (Fisher's exact test), Q value = 0.036

Table S332.  Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
PDGFRA MUTATED 2 1 7
PDGFRA WILD-TYPE 220 183 96

Figure S145.  Get High-res Image Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'PDGFRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S333.  Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
PDGFRA MUTATED 3 3 4
PDGFRA WILD-TYPE 181 159 155
'PDGFRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.85

Table S334.  Gene #27: 'PDGFRA MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
PDGFRA MUTATED 0 2 4 4
PDGFRA WILD-TYPE 90 136 184 85
'NUP210L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S335.  Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
NUP210L MUTATED 1 2 2 1
NUP210L WILD-TYPE 68 41 72 53
'NUP210L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S336.  Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
NUP210L MUTATED 0 2 1 3
NUP210L WILD-TYPE 63 48 47 76
'NUP210L MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S337.  Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
NUP210L MUTATED 3 3 2 0
NUP210L WILD-TYPE 74 90 43 60
'NUP210L MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S338.  Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
NUP210L MUTATED 5 0 3
NUP210L WILD-TYPE 133 61 73
'NUP210L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.85

Table S339.  Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
NUP210L MUTATED 7 4 0
NUP210L WILD-TYPE 288 477 7
'NUP210L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.19

Table S340.  Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
NUP210L MUTATED 7 1 0 1
NUP210L WILD-TYPE 153 231 64 165

Figure S146.  Get High-res Image Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'NUP210L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S341.  Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
NUP210L MUTATED 2 4 3
NUP210L WILD-TYPE 193 182 186
'NUP210L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S342.  Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
NUP210L MUTATED 3 4 2
NUP210L WILD-TYPE 201 215 145
'NUP210L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.22

Table S343.  Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
NUP210L MUTATED 6 0 2
NUP210L WILD-TYPE 221 235 190

Figure S147.  Get High-res Image Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'NUP210L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.85

Table S344.  Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
NUP210L MUTATED 5 1 2
NUP210L WILD-TYPE 191 189 266
'NUP210L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S345.  Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
NUP210L MUTATED 0 2 2 0
NUP210L WILD-TYPE 136 105 181 83
'NUP210L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0765 (Fisher's exact test), Q value = 0.53

Table S346.  Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
NUP210L MUTATED 0 2 2
NUP210L WILD-TYPE 222 182 101
'NUP210L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.81

Table S347.  Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
NUP210L MUTATED 1 0 3
NUP210L WILD-TYPE 183 162 156
'NUP210L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S348.  Gene #28: 'NUP210L MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
NUP210L MUTATED 0 0 3 1
NUP210L WILD-TYPE 90 138 185 88
'IRS4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.67

Table S349.  Gene #29: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
IRS4 MUTATED 1 2 0 0
IRS4 WILD-TYPE 68 41 74 54
'IRS4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S350.  Gene #29: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
IRS4 MUTATED 1 1 0 1
IRS4 WILD-TYPE 62 49 48 78
'IRS4 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 0.43

Table S351.  Gene #29: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
IRS4 MUTATED 3 0 0 0
IRS4 WILD-TYPE 74 93 45 60
'IRS4 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.68

Table S352.  Gene #29: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
IRS4 MUTATED 0 1 2
IRS4 WILD-TYPE 138 60 74
'IRS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S353.  Gene #29: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
IRS4 MUTATED 3 7 0
IRS4 WILD-TYPE 292 474 7
'IRS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S354.  Gene #29: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
IRS4 MUTATED 3 3 1 1
IRS4 WILD-TYPE 157 229 63 165
'IRS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S355.  Gene #29: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
IRS4 MUTATED 4 2 1
IRS4 WILD-TYPE 191 184 188
'IRS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S356.  Gene #29: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
IRS4 MUTATED 2 4 1
IRS4 WILD-TYPE 202 215 146
'IRS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S357.  Gene #29: 'IRS4 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
IRS4 MUTATED 5 3 2
IRS4 WILD-TYPE 222 232 190
'IRS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.91

Table S358.  Gene #29: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
IRS4 MUTATED 3 5 2
IRS4 WILD-TYPE 193 185 266
'IRS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S359.  Gene #29: 'IRS4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
IRS4 MUTATED 1 3 3 0
IRS4 WILD-TYPE 135 104 180 83
'IRS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S360.  Gene #29: 'IRS4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
IRS4 MUTATED 2 3 2
IRS4 WILD-TYPE 220 181 101
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.95

Table S361.  Gene #29: 'IRS4 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
IRS4 MUTATED 1 2 4
IRS4 WILD-TYPE 183 160 155
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S362.  Gene #29: 'IRS4 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
IRS4 MUTATED 1 2 3 1
IRS4 WILD-TYPE 89 136 185 88
'NKD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S363.  Gene #30: 'NKD2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
NKD2 MUTATED 1 3 0
NKD2 WILD-TYPE 294 478 7
'NKD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S364.  Gene #30: 'NKD2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
NKD2 MUTATED 1 2 0 1
NKD2 WILD-TYPE 159 230 64 165
'NKD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S365.  Gene #30: 'NKD2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
NKD2 MUTATED 1 3 0
NKD2 WILD-TYPE 226 232 192
'NKD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S366.  Gene #30: 'NKD2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
NKD2 MUTATED 1 1 2
NKD2 WILD-TYPE 195 189 266
'NKD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S367.  Gene #30: 'NKD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
NKD2 MUTATED 0 2 1 1
NKD2 WILD-TYPE 136 105 182 82
'NKD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S368.  Gene #30: 'NKD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
NKD2 MUTATED 2 1 1
NKD2 WILD-TYPE 220 183 102
'NKD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S369.  Gene #30: 'NKD2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
NKD2 MUTATED 2 1 1
NKD2 WILD-TYPE 182 161 158
'NKD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S370.  Gene #30: 'NKD2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
NKD2 MUTATED 1 1 1 1
NKD2 WILD-TYPE 89 137 187 88
'MED9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S371.  Gene #31: 'MED9 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
MED9 MUTATED 1 2 0
MED9 WILD-TYPE 294 479 7
'MED9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S372.  Gene #31: 'MED9 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
MED9 MUTATED 0 1 1 1
MED9 WILD-TYPE 160 231 63 165
'MED9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.35

Table S373.  Gene #31: 'MED9 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
MED9 MUTATED 0 3 0
MED9 WILD-TYPE 195 183 189

Figure S148.  Get High-res Image Gene #31: 'MED9 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

'MED9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.95

Table S374.  Gene #31: 'MED9 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
MED9 MUTATED 0 1 2
MED9 WILD-TYPE 204 218 145
'MED9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.97

Table S375.  Gene #31: 'MED9 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
MED9 MUTATED 0 1 2
MED9 WILD-TYPE 227 234 190
'MED9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S376.  Gene #31: 'MED9 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
MED9 MUTATED 1 1 1
MED9 WILD-TYPE 195 189 267
'MED9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S377.  Gene #31: 'MED9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
MED9 MUTATED 1 0 2 0
MED9 WILD-TYPE 135 107 181 83
'MED9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S378.  Gene #31: 'MED9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
MED9 MUTATED 1 1 1
MED9 WILD-TYPE 221 183 102
'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S379.  Gene #31: 'MED9 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
MED9 MUTATED 2 0 1
MED9 WILD-TYPE 182 162 158
'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S380.  Gene #31: 'MED9 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
MED9 MUTATED 0 0 2 1
MED9 WILD-TYPE 90 138 186 88
'HTRA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.85

Table S381.  Gene #32: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
HTRA2 MUTATED 0 5 0
HTRA2 WILD-TYPE 295 476 7
'HTRA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S382.  Gene #32: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
HTRA2 MUTATED 0 3 1 1
HTRA2 WILD-TYPE 160 229 63 165
'HTRA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.95

Table S383.  Gene #32: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
HTRA2 MUTATED 3 1 0
HTRA2 WILD-TYPE 192 185 189
'HTRA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S384.  Gene #32: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
HTRA2 MUTATED 2 1 1
HTRA2 WILD-TYPE 202 218 146
'HTRA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S385.  Gene #32: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
HTRA2 MUTATED 1 2 2
HTRA2 WILD-TYPE 226 233 190
'HTRA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S386.  Gene #32: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
HTRA2 MUTATED 1 2 2
HTRA2 WILD-TYPE 195 188 266
'HTRA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S387.  Gene #32: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
HTRA2 MUTATED 3 0 1 1
HTRA2 WILD-TYPE 133 107 182 82
'HTRA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S388.  Gene #32: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
HTRA2 MUTATED 3 2 0
HTRA2 WILD-TYPE 219 182 103
'HTRA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S389.  Gene #32: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
HTRA2 MUTATED 2 2 0
HTRA2 WILD-TYPE 182 160 159
'HTRA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S390.  Gene #32: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
HTRA2 MUTATED 2 1 1 0
HTRA2 WILD-TYPE 88 137 187 89
'BCOR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S391.  Gene #33: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
BCOR MUTATED 1 1 2 3
BCOR WILD-TYPE 68 42 72 51
'BCOR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S392.  Gene #33: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
BCOR MUTATED 0 2 2 3
BCOR WILD-TYPE 63 48 46 76
'BCOR MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.63

Table S393.  Gene #33: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
BCOR MUTATED 0 2 3 2
BCOR WILD-TYPE 77 91 42 58
'BCOR MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S394.  Gene #33: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
BCOR MUTATED 5 1 1
BCOR WILD-TYPE 133 60 75
'BCOR MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S395.  Gene #33: 'BCOR MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
BCOR MUTATED 8 14 0
BCOR WILD-TYPE 287 467 7
'BCOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S396.  Gene #33: 'BCOR MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
BCOR MUTATED 4 5 1 7
BCOR WILD-TYPE 156 227 63 159
'BCOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S397.  Gene #33: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
BCOR MUTATED 4 3 7
BCOR WILD-TYPE 191 183 182
'BCOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S398.  Gene #33: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
BCOR MUTATED 6 5 3
BCOR WILD-TYPE 198 214 144
'BCOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.95

Table S399.  Gene #33: 'BCOR MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
BCOR MUTATED 5 4 8
BCOR WILD-TYPE 222 231 184
'BCOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S400.  Gene #33: 'BCOR MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
BCOR MUTATED 3 4 10
BCOR WILD-TYPE 193 186 258
'BCOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S401.  Gene #33: 'BCOR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
BCOR MUTATED 5 3 6 1
BCOR WILD-TYPE 131 104 177 82
'BCOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S402.  Gene #33: 'BCOR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
BCOR MUTATED 5 6 4
BCOR WILD-TYPE 217 178 99
'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S403.  Gene #33: 'BCOR MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
BCOR MUTATED 4 6 5
BCOR WILD-TYPE 180 156 154
'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S404.  Gene #33: 'BCOR MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
BCOR MUTATED 2 5 6 2
BCOR WILD-TYPE 88 133 182 87
'REN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S405.  Gene #34: 'REN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
REN MUTATED 0 0 2 1
REN WILD-TYPE 69 43 72 53
'REN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S406.  Gene #34: 'REN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
REN MUTATED 0 0 1 2
REN WILD-TYPE 63 50 47 77
'REN MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.52

Table S407.  Gene #34: 'REN MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
REN MUTATED 1 1 3 0
REN WILD-TYPE 76 92 42 60
'REN MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S408.  Gene #34: 'REN MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
REN MUTATED 4 0 1
REN WILD-TYPE 134 61 75
'REN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00281 (Fisher's exact test), Q value = 0.062

Table S409.  Gene #34: 'REN MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
REN MUTATED 7 0 0
REN WILD-TYPE 288 481 7

Figure S149.  Get High-res Image Gene #34: 'REN MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'REN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00269 (Fisher's exact test), Q value = 0.06

Table S410.  Gene #34: 'REN MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
REN MUTATED 5 0 0 0
REN WILD-TYPE 155 232 64 166

Figure S150.  Get High-res Image Gene #34: 'REN MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'REN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S411.  Gene #34: 'REN MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
REN MUTATED 1 3 2
REN WILD-TYPE 194 183 187
'REN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S412.  Gene #34: 'REN MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
REN MUTATED 2 3 1
REN WILD-TYPE 202 216 146
'REN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.85

Table S413.  Gene #34: 'REN MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
REN MUTATED 1 0 2
REN WILD-TYPE 226 235 190
'REN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S414.  Gene #34: 'REN MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
REN MUTATED 1 0 2
REN WILD-TYPE 195 190 266
'RBPJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.65

Table S415.  Gene #35: 'RBPJ MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
RBPJ MUTATED 0 7 0
RBPJ WILD-TYPE 295 474 7
'RBPJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 0.38

Table S416.  Gene #35: 'RBPJ MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
RBPJ MUTATED 0 1 1 5
RBPJ WILD-TYPE 160 231 63 161

Figure S151.  Get High-res Image Gene #35: 'RBPJ MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'RBPJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S417.  Gene #35: 'RBPJ MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
RBPJ MUTATED 3 0 2
RBPJ WILD-TYPE 192 186 187
'RBPJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00677 (Fisher's exact test), Q value = 0.12

Table S418.  Gene #35: 'RBPJ MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
RBPJ MUTATED 5 0 0
RBPJ WILD-TYPE 199 219 147

Figure S152.  Get High-res Image Gene #35: 'RBPJ MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

'RBPJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.29

Table S419.  Gene #35: 'RBPJ MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
RBPJ MUTATED 2 0 5
RBPJ WILD-TYPE 225 235 187

Figure S153.  Get High-res Image Gene #35: 'RBPJ MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'RBPJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.75

Table S420.  Gene #35: 'RBPJ MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
RBPJ MUTATED 0 2 5
RBPJ WILD-TYPE 196 188 263
'RBPJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S421.  Gene #35: 'RBPJ MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
RBPJ MUTATED 0 2 4 1
RBPJ WILD-TYPE 136 105 179 82
'RBPJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.3

Table S422.  Gene #35: 'RBPJ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
RBPJ MUTATED 0 5 2
RBPJ WILD-TYPE 222 179 101

Figure S154.  Get High-res Image Gene #35: 'RBPJ MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'RBPJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.67

Table S423.  Gene #35: 'RBPJ MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
RBPJ MUTATED 1 1 5
RBPJ WILD-TYPE 183 161 154
'RBPJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S424.  Gene #35: 'RBPJ MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
RBPJ MUTATED 0 1 4 2
RBPJ WILD-TYPE 90 137 184 87
'DDX5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.86

Table S425.  Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
DDX5 MUTATED 1 0 0 2
DDX5 WILD-TYPE 68 43 74 52
'DDX5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S426.  Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
DDX5 MUTATED 1 1 0 1
DDX5 WILD-TYPE 62 49 48 78
'DDX5 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S427.  Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
DDX5 MUTATED 0 2 1 1
DDX5 WILD-TYPE 77 91 44 59
'DDX5 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S428.  Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
DDX5 MUTATED 1 1 2
DDX5 WILD-TYPE 137 60 74
'DDX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S429.  Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
DDX5 MUTATED 3 6 0
DDX5 WILD-TYPE 292 475 7
'DDX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S430.  Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
DDX5 MUTATED 3 2 0 2
DDX5 WILD-TYPE 157 230 64 164
'DDX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S431.  Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
DDX5 MUTATED 4 2 1
DDX5 WILD-TYPE 191 184 188
'DDX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S432.  Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
DDX5 MUTATED 4 2 1
DDX5 WILD-TYPE 200 217 146
'DDX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S433.  Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
DDX5 MUTATED 2 3 1
DDX5 WILD-TYPE 225 232 191
'DDX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S434.  Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
DDX5 MUTATED 1 3 2
DDX5 WILD-TYPE 195 187 266
'DDX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.95

Table S435.  Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
DDX5 MUTATED 0 2 3 0
DDX5 WILD-TYPE 136 105 180 83
'DDX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S436.  Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
DDX5 MUTATED 1 3 1
DDX5 WILD-TYPE 221 181 102
'DDX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.3

Table S437.  Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
DDX5 MUTATED 0 1 4
DDX5 WILD-TYPE 184 161 155

Figure S155.  Get High-res Image Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'DDX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.99

Table S438.  Gene #36: 'DDX5 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
DDX5 MUTATED 0 1 4 0
DDX5 WILD-TYPE 90 137 184 89
'PTPN11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S439.  Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
PTPN11 MUTATED 1 0 1 1
PTPN11 WILD-TYPE 68 43 73 53
'PTPN11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S440.  Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
PTPN11 MUTATED 1 0 0 2
PTPN11 WILD-TYPE 62 50 48 77
'PTPN11 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.00638 (Fisher's exact test), Q value = 0.12

Table S441.  Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
PTPN11 MUTATED 0 0 3 1
PTPN11 WILD-TYPE 77 93 42 59

Figure S156.  Get High-res Image Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

'PTPN11 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S442.  Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
PTPN11 MUTATED 2 1 1
PTPN11 WILD-TYPE 136 60 75
'PTPN11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S443.  Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PTPN11 MUTATED 5 5 0
PTPN11 WILD-TYPE 290 476 7
'PTPN11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.32

Table S444.  Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
PTPN11 MUTATED 4 1 3 1
PTPN11 WILD-TYPE 156 231 61 165

Figure S157.  Get High-res Image Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'PTPN11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S445.  Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
PTPN11 MUTATED 3 2 3
PTPN11 WILD-TYPE 192 184 186
'PTPN11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.95

Table S446.  Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
PTPN11 MUTATED 5 1 2
PTPN11 WILD-TYPE 199 218 145
'PTPN11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.89

Table S447.  Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
PTPN11 MUTATED 5 1 3
PTPN11 WILD-TYPE 222 234 189
'PTPN11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.95

Table S448.  Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
PTPN11 MUTATED 5 2 2
PTPN11 WILD-TYPE 191 188 266
'PTPN11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.88

Table S449.  Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
PTPN11 MUTATED 3 3 1 0
PTPN11 WILD-TYPE 133 104 182 83
'PTPN11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00544 (Fisher's exact test), Q value = 0.1

Table S450.  Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
PTPN11 MUTATED 1 1 5
PTPN11 WILD-TYPE 221 183 98

Figure S158.  Get High-res Image Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'PTPN11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.22

Table S451.  Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
PTPN11 MUTATED 6 0 1
PTPN11 WILD-TYPE 178 162 158

Figure S159.  Get High-res Image Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'PTPN11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00229 (Fisher's exact test), Q value = 0.052

Table S452.  Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
PTPN11 MUTATED 1 0 1 5
PTPN11 WILD-TYPE 89 138 187 84

Figure S160.  Get High-res Image Gene #37: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KDR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.85

Table S453.  Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
KDR MUTATED 1 2 1 4
KDR WILD-TYPE 68 41 73 50
'KDR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S454.  Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
KDR MUTATED 1 3 1 3
KDR WILD-TYPE 62 47 47 76
'KDR MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.95

Table S455.  Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
KDR MUTATED 2 1 3 2
KDR WILD-TYPE 75 92 42 58
'KDR MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S456.  Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
KDR MUTATED 6 1 1
KDR WILD-TYPE 132 60 75
'KDR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.85

Table S457.  Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
KDR MUTATED 8 5 0
KDR WILD-TYPE 287 476 7
'KDR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.36

Table S458.  Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
KDR MUTATED 6 1 0 1
KDR WILD-TYPE 154 231 64 165

Figure S161.  Get High-res Image Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'KDR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S459.  Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
KDR MUTATED 4 2 4
KDR WILD-TYPE 191 184 185
'KDR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0952 (Fisher's exact test), Q value = 0.6

Table S460.  Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
KDR MUTATED 7 2 1
KDR WILD-TYPE 197 217 146
'KDR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.63

Table S461.  Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
KDR MUTATED 4 0 2
KDR WILD-TYPE 223 235 190
'KDR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S462.  Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
KDR MUTATED 3 1 2
KDR WILD-TYPE 193 189 266
'KDR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.95

Table S463.  Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
KDR MUTATED 0 2 3 0
KDR WILD-TYPE 136 105 180 83
'KDR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.27

Table S464.  Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
KDR MUTATED 0 2 3
KDR WILD-TYPE 222 182 100

Figure S162.  Get High-res Image Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'KDR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.91

Table S465.  Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
KDR MUTATED 2 0 3
KDR WILD-TYPE 182 162 156
'KDR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.85

Table S466.  Gene #38: 'KDR MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
KDR MUTATED 0 0 3 2
KDR WILD-TYPE 90 138 185 87
'RPL5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S467.  Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
RPL5 MUTATED 1 2 3 0
RPL5 WILD-TYPE 68 41 71 54
'RPL5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S468.  Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
RPL5 MUTATED 3 0 1 2
RPL5 WILD-TYPE 60 50 47 77
'RPL5 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S469.  Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
RPL5 MUTATED 1 3 1 2
RPL5 WILD-TYPE 76 90 44 58
'RPL5 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S470.  Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
RPL5 MUTATED 3 3 1
RPL5 WILD-TYPE 135 58 75
'RPL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.95

Table S471.  Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
RPL5 MUTATED 6 4 0
RPL5 WILD-TYPE 289 477 7
'RPL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.19

Table S472.  Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
RPL5 MUTATED 5 0 0 1
RPL5 WILD-TYPE 155 232 64 165

Figure S163.  Get High-res Image Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'RPL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S473.  Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
RPL5 MUTATED 4 1 2
RPL5 WILD-TYPE 191 185 187
'RPL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S474.  Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
RPL5 MUTATED 3 3 1
RPL5 WILD-TYPE 201 216 146
'RPL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.26

Table S475.  Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
RPL5 MUTATED 5 0 1
RPL5 WILD-TYPE 222 235 191

Figure S164.  Get High-res Image Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'RPL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.85

Table S476.  Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
RPL5 MUTATED 4 1 1
RPL5 WILD-TYPE 192 189 267
'RPL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0894 (Fisher's exact test), Q value = 0.59

Table S477.  Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
RPL5 MUTATED 0 2 0 1
RPL5 WILD-TYPE 136 105 183 82
'RPL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0527 (Fisher's exact test), Q value = 0.43

Table S478.  Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
RPL5 MUTATED 0 1 2
RPL5 WILD-TYPE 222 183 101
'RPL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S479.  Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
RPL5 MUTATED 1 1 1
RPL5 WILD-TYPE 183 161 158
'RPL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S480.  Gene #39: 'RPL5 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
RPL5 MUTATED 0 0 2 1
RPL5 WILD-TYPE 90 138 186 88
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S481.  Gene #40: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
NRAS MUTATED 1 4 0
NRAS WILD-TYPE 294 477 7
'NRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.94

Table S482.  Gene #40: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
NRAS MUTATED 0 1 0 3
NRAS WILD-TYPE 160 231 64 163
'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.86

Table S483.  Gene #40: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
NRAS MUTATED 0 2 3
NRAS WILD-TYPE 195 184 186
'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S484.  Gene #40: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
NRAS MUTATED 1 2 2
NRAS WILD-TYPE 203 217 145
'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.65

Table S485.  Gene #40: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
NRAS MUTATED 0 1 3
NRAS WILD-TYPE 227 234 189
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.98

Table S486.  Gene #40: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
NRAS MUTATED 0 1 3
NRAS WILD-TYPE 196 189 265
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.98

Table S487.  Gene #40: 'NRAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
NRAS MUTATED 0 0 3 1
NRAS WILD-TYPE 136 107 180 82
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S488.  Gene #40: 'NRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
NRAS MUTATED 1 2 1
NRAS WILD-TYPE 221 182 102
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S489.  Gene #40: 'NRAS MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
NRAS MUTATED 0 2 2
NRAS WILD-TYPE 184 160 157
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S490.  Gene #40: 'NRAS MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
NRAS MUTATED 0 2 2 0
NRAS WILD-TYPE 90 136 186 89
'TPX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S491.  Gene #41: 'TPX2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TPX2 MUTATED 2 5 0
TPX2 WILD-TYPE 293 476 7
'TPX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S492.  Gene #41: 'TPX2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TPX2 MUTATED 3 3 0 1
TPX2 WILD-TYPE 157 229 64 165
'TPX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S493.  Gene #41: 'TPX2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TPX2 MUTATED 1 2 1
TPX2 WILD-TYPE 194 184 188
'TPX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S494.  Gene #41: 'TPX2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TPX2 MUTATED 1 2 1
TPX2 WILD-TYPE 203 217 146
'TPX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S495.  Gene #41: 'TPX2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TPX2 MUTATED 2 2 2
TPX2 WILD-TYPE 225 233 190
'TPX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S496.  Gene #41: 'TPX2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TPX2 MUTATED 1 3 2
TPX2 WILD-TYPE 195 187 266
'TPX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S497.  Gene #41: 'TPX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TPX2 MUTATED 0 1 3 1
TPX2 WILD-TYPE 136 106 180 82
'TPX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0713 (Fisher's exact test), Q value = 0.51

Table S498.  Gene #41: 'TPX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TPX2 MUTATED 0 4 1
TPX2 WILD-TYPE 222 180 102
'TPX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.81

Table S499.  Gene #41: 'TPX2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TPX2 MUTATED 0 2 3
TPX2 WILD-TYPE 184 160 156
'TPX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.99

Table S500.  Gene #41: 'TPX2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TPX2 MUTATED 0 1 4 0
TPX2 WILD-TYPE 90 137 184 89
'EMG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.73

Table S501.  Gene #42: 'EMG1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
EMG1 MUTATED 0 6 0
EMG1 WILD-TYPE 295 475 7
'EMG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S502.  Gene #42: 'EMG1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
EMG1 MUTATED 0 3 0 3
EMG1 WILD-TYPE 160 229 64 163
'EMG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.89

Table S503.  Gene #42: 'EMG1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
EMG1 MUTATED 3 3 0
EMG1 WILD-TYPE 192 183 189
'EMG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S504.  Gene #42: 'EMG1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
EMG1 MUTATED 3 2 1
EMG1 WILD-TYPE 201 217 146
'EMG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.75

Table S505.  Gene #42: 'EMG1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
EMG1 MUTATED 0 4 2
EMG1 WILD-TYPE 227 231 190
'EMG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0965 (Fisher's exact test), Q value = 0.61

Table S506.  Gene #42: 'EMG1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
EMG1 MUTATED 0 1 5
EMG1 WILD-TYPE 196 189 263
'EMG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S507.  Gene #42: 'EMG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
EMG1 MUTATED 1 0 3 2
EMG1 WILD-TYPE 135 107 180 81
'EMG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S508.  Gene #42: 'EMG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
EMG1 MUTATED 4 2 0
EMG1 WILD-TYPE 218 182 103
'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S509.  Gene #42: 'EMG1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
EMG1 MUTATED 1 3 2
EMG1 WILD-TYPE 183 159 157
'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S510.  Gene #42: 'EMG1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
EMG1 MUTATED 1 3 2 0
EMG1 WILD-TYPE 89 135 186 89
'BRAF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S511.  Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
BRAF MUTATED 1 1 2 0
BRAF WILD-TYPE 68 42 72 54
'BRAF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S512.  Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
BRAF MUTATED 2 0 1 1
BRAF WILD-TYPE 61 50 47 78
'BRAF MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.99

Table S513.  Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
BRAF MUTATED 2 1 0 3
BRAF WILD-TYPE 75 92 45 57
'BRAF MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.0288 (Fisher's exact test), Q value = 0.3

Table S514.  Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
BRAF MUTATED 2 4 0
BRAF WILD-TYPE 136 57 76

Figure S165.  Get High-res Image Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S515.  Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
BRAF MUTATED 6 5 0
BRAF WILD-TYPE 289 476 7
'BRAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.0073

Table S516.  Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
BRAF MUTATED 3 0 4 0
BRAF WILD-TYPE 157 232 60 166

Figure S166.  Get High-res Image Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'BRAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S517.  Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
BRAF MUTATED 3 4 1
BRAF WILD-TYPE 192 182 188
'BRAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.97

Table S518.  Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
BRAF MUTATED 4 1 3
BRAF WILD-TYPE 200 218 144
'BRAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 0.43

Table S519.  Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
BRAF MUTATED 5 0 3
BRAF WILD-TYPE 222 235 189

Figure S167.  Get High-res Image Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S520.  Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
BRAF MUTATED 4 1 3
BRAF WILD-TYPE 192 189 265
'BRAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.95

Table S521.  Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
BRAF MUTATED 0 2 3 0
BRAF WILD-TYPE 136 105 180 83
'BRAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0902 (Fisher's exact test), Q value = 0.59

Table S522.  Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
BRAF MUTATED 0 3 2
BRAF WILD-TYPE 222 181 101
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 0.48

Table S523.  Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
BRAF MUTATED 1 0 4
BRAF WILD-TYPE 183 162 155
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.85

Table S524.  Gene #43: 'BRAF MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
BRAF MUTATED 0 0 3 2
BRAF WILD-TYPE 90 138 185 87
'MX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S525.  Gene #44: 'MX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
MX2 MUTATED 2 0 2 0
MX2 WILD-TYPE 67 43 72 54
'MX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S526.  Gene #44: 'MX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
MX2 MUTATED 1 0 1 2
MX2 WILD-TYPE 62 50 47 77
'MX2 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S527.  Gene #44: 'MX2 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
MX2 MUTATED 2 0 1 1
MX2 WILD-TYPE 75 93 44 59
'MX2 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S528.  Gene #44: 'MX2 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
MX2 MUTATED 1 1 2
MX2 WILD-TYPE 137 60 74
'MX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S529.  Gene #44: 'MX2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
MX2 MUTATED 5 4 0
MX2 WILD-TYPE 290 477 7
'MX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S530.  Gene #44: 'MX2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
MX2 MUTATED 2 1 0 2
MX2 WILD-TYPE 158 231 64 164
'MX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S531.  Gene #44: 'MX2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
MX2 MUTATED 3 1 2
MX2 WILD-TYPE 192 185 187
'MX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S532.  Gene #44: 'MX2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
MX2 MUTATED 3 3 0
MX2 WILD-TYPE 201 216 147
'MX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S533.  Gene #44: 'MX2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
MX2 MUTATED 1 2 1
MX2 WILD-TYPE 226 233 191
'MX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S534.  Gene #44: 'MX2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
MX2 MUTATED 1 1 2
MX2 WILD-TYPE 195 189 266
'MX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S535.  Gene #44: 'MX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
MX2 MUTATED 0 2 1 1
MX2 WILD-TYPE 136 105 182 82
'MX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S536.  Gene #44: 'MX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
MX2 MUTATED 2 1 1
MX2 WILD-TYPE 220 183 102
'MX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S537.  Gene #44: 'MX2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
MX2 MUTATED 2 1 1
MX2 WILD-TYPE 182 161 158
'MX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S538.  Gene #44: 'MX2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
MX2 MUTATED 0 2 1 1
MX2 WILD-TYPE 90 136 187 88
'FAM47C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S539.  Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
FAM47C MUTATED 0 0 2 1
FAM47C WILD-TYPE 69 43 72 53
'FAM47C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0582 (Fisher's exact test), Q value = 0.46

Table S540.  Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
FAM47C MUTATED 0 1 2 0
FAM47C WILD-TYPE 63 49 46 79
'FAM47C MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S541.  Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
FAM47C MUTATED 1 2 2 0
FAM47C WILD-TYPE 76 91 43 60
'FAM47C MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S542.  Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
FAM47C MUTATED 2 1 2
FAM47C WILD-TYPE 136 60 74
'FAM47C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S543.  Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
FAM47C MUTATED 5 17 0
FAM47C WILD-TYPE 290 464 7
'FAM47C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S544.  Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
FAM47C MUTATED 3 7 3 7
FAM47C WILD-TYPE 157 225 61 159
'FAM47C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S545.  Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
FAM47C MUTATED 7 6 5
FAM47C WILD-TYPE 188 180 184
'FAM47C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S546.  Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
FAM47C MUTATED 6 6 6
FAM47C WILD-TYPE 198 213 141
'FAM47C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.43

Table S547.  Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
FAM47C MUTATED 5 4 11
FAM47C WILD-TYPE 222 231 181
'FAM47C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0047 (Fisher's exact test), Q value = 0.092

Table S548.  Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
FAM47C MUTATED 4 1 15
FAM47C WILD-TYPE 192 189 253

Figure S168.  Get High-res Image Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'FAM47C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S549.  Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
FAM47C MUTATED 3 4 9 2
FAM47C WILD-TYPE 133 103 174 81
'FAM47C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0916 (Fisher's exact test), Q value = 0.59

Table S550.  Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
FAM47C MUTATED 5 11 2
FAM47C WILD-TYPE 217 173 101
'FAM47C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00856 (Fisher's exact test), Q value = 0.14

Table S551.  Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
FAM47C MUTATED 3 3 12
FAM47C WILD-TYPE 181 159 147

Figure S169.  Get High-res Image Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'FAM47C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00345 (Fisher's exact test), Q value = 0.072

Table S552.  Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
FAM47C MUTATED 0 3 14 1
FAM47C WILD-TYPE 90 135 174 88

Figure S170.  Get High-res Image Gene #45: 'FAM47C MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRERF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.98

Table S553.  Gene #46: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TRERF1 MUTATED 1 6 0
TRERF1 WILD-TYPE 294 475 7
'TRERF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S554.  Gene #46: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TRERF1 MUTATED 2 3 1 1
TRERF1 WILD-TYPE 158 229 63 165
'TRERF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S555.  Gene #46: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TRERF1 MUTATED 3 2 1
TRERF1 WILD-TYPE 192 184 188
'TRERF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S556.  Gene #46: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TRERF1 MUTATED 3 2 1
TRERF1 WILD-TYPE 201 217 146
'TRERF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S557.  Gene #46: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TRERF1 MUTATED 2 2 2
TRERF1 WILD-TYPE 225 233 190
'TRERF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.23

Table S558.  Gene #46: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TRERF1 MUTATED 0 5 1
TRERF1 WILD-TYPE 196 185 267

Figure S171.  Get High-res Image Gene #46: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'TRERF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S559.  Gene #46: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TRERF1 MUTATED 1 3 2 0
TRERF1 WILD-TYPE 135 104 181 83
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S560.  Gene #46: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TRERF1 MUTATED 2 2 2
TRERF1 WILD-TYPE 220 182 101
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.64

Table S561.  Gene #46: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TRERF1 MUTATED 2 0 4
TRERF1 WILD-TYPE 182 162 155
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S562.  Gene #46: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TRERF1 MUTATED 1 0 4 1
TRERF1 WILD-TYPE 89 138 184 88
'MYST4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.66

Table S563.  Gene #47: 'MYST4 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
MYST4 MUTATED 1 11 0
MYST4 WILD-TYPE 294 470 7
'MYST4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.63

Table S564.  Gene #47: 'MYST4 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
MYST4 MUTATED 3 2 0 7
MYST4 WILD-TYPE 157 230 64 159
'MYST4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 0.56

Table S565.  Gene #47: 'MYST4 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
MYST4 MUTATED 7 2 1
MYST4 WILD-TYPE 188 184 188
'MYST4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.95

Table S566.  Gene #47: 'MYST4 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
MYST4 MUTATED 6 3 1
MYST4 WILD-TYPE 198 216 146
'MYST4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S567.  Gene #47: 'MYST4 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
MYST4 MUTATED 2 4 5
MYST4 WILD-TYPE 225 231 187
'MYST4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.85

Table S568.  Gene #47: 'MYST4 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
MYST4 MUTATED 1 3 7
MYST4 WILD-TYPE 195 187 261
'MYST4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.85

Table S569.  Gene #47: 'MYST4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
MYST4 MUTATED 1 3 3 4
MYST4 WILD-TYPE 135 104 180 79
'MYST4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S570.  Gene #47: 'MYST4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
MYST4 MUTATED 5 4 2
MYST4 WILD-TYPE 217 180 101
'MYST4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.48

Table S571.  Gene #47: 'MYST4 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
MYST4 MUTATED 1 7 3
MYST4 WILD-TYPE 183 155 156
'MYST4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S572.  Gene #47: 'MYST4 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
MYST4 MUTATED 1 5 4 1
MYST4 WILD-TYPE 89 133 184 88
'SRPX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S573.  Gene #48: 'SRPX MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
SRPX MUTATED 2 2 0
SRPX WILD-TYPE 293 479 7
'SRPX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.96

Table S574.  Gene #48: 'SRPX MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
SRPX MUTATED 2 0 0 2
SRPX WILD-TYPE 158 232 64 164
'SRPX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S575.  Gene #48: 'SRPX MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
SRPX MUTATED 2 0 2
SRPX WILD-TYPE 193 186 187
'SRPX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S576.  Gene #48: 'SRPX MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
SRPX MUTATED 2 2 0
SRPX WILD-TYPE 202 217 147
'SRPX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S577.  Gene #48: 'SRPX MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
SRPX MUTATED 2 2 0
SRPX WILD-TYPE 225 233 192
'SRPX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S578.  Gene #48: 'SRPX MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
SRPX MUTATED 2 0 2
SRPX WILD-TYPE 194 190 266
'SRPX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.95

Table S579.  Gene #48: 'SRPX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
SRPX MUTATED 2 1 0 1
SRPX WILD-TYPE 134 106 183 82
'SRPX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.85

Table S580.  Gene #48: 'SRPX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
SRPX MUTATED 2 0 2
SRPX WILD-TYPE 220 184 101
'SRPX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S581.  Gene #48: 'SRPX MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
SRPX MUTATED 3 1 0
SRPX WILD-TYPE 181 161 159
'SRPX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.063 (Fisher's exact test), Q value = 0.48

Table S582.  Gene #48: 'SRPX MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
SRPX MUTATED 0 2 0 2
SRPX WILD-TYPE 90 136 188 87
'SETD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00538 (Fisher's exact test), Q value = 0.1

Table S583.  Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
SETD2 MUTATED 0 3 0 0
SETD2 WILD-TYPE 69 40 74 54

Figure S172.  Get High-res Image Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SETD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S584.  Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
SETD2 MUTATED 2 1 0 0
SETD2 WILD-TYPE 61 49 48 79
'SETD2 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S585.  Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
SETD2 MUTATED 1 0 1 1
SETD2 WILD-TYPE 76 93 44 59
'SETD2 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S586.  Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
SETD2 MUTATED 2 0 1
SETD2 WILD-TYPE 136 61 75
'SETD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S587.  Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
SETD2 MUTATED 6 7 0
SETD2 WILD-TYPE 289 474 7
'SETD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.83

Table S588.  Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
SETD2 MUTATED 7 3 1 2
SETD2 WILD-TYPE 153 229 63 164
'SETD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S589.  Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
SETD2 MUTATED 4 3 3
SETD2 WILD-TYPE 191 183 186
'SETD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S590.  Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
SETD2 MUTATED 5 4 1
SETD2 WILD-TYPE 199 215 146
'SETD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.65

Table S591.  Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
SETD2 MUTATED 8 2 3
SETD2 WILD-TYPE 219 233 189
'SETD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S592.  Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
SETD2 MUTATED 5 5 3
SETD2 WILD-TYPE 191 185 265
'SETD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S593.  Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
SETD2 MUTATED 2 4 3 1
SETD2 WILD-TYPE 134 103 180 82
'SETD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.091 (Fisher's exact test), Q value = 0.59

Table S594.  Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
SETD2 MUTATED 3 2 5
SETD2 WILD-TYPE 219 182 98
'SETD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S595.  Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
SETD2 MUTATED 3 3 4
SETD2 WILD-TYPE 181 159 155
'SETD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S596.  Gene #49: 'SETD2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
SETD2 MUTATED 1 2 3 4
SETD2 WILD-TYPE 89 136 185 85
'TNRC18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.97

Table S597.  Gene #50: 'TNRC18 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TNRC18 MUTATED 2 9 0
TNRC18 WILD-TYPE 293 472 7
'TNRC18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S598.  Gene #50: 'TNRC18 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TNRC18 MUTATED 2 5 2 1
TNRC18 WILD-TYPE 158 227 62 165
'TNRC18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S599.  Gene #50: 'TNRC18 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TNRC18 MUTATED 2 4 2
TNRC18 WILD-TYPE 193 182 187
'TNRC18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S600.  Gene #50: 'TNRC18 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TNRC18 MUTATED 3 2 3
TNRC18 WILD-TYPE 201 217 144
'TNRC18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.88

Table S601.  Gene #50: 'TNRC18 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TNRC18 MUTATED 3 2 6
TNRC18 WILD-TYPE 224 233 186
'TNRC18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S602.  Gene #50: 'TNRC18 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TNRC18 MUTATED 2 3 6
TNRC18 WILD-TYPE 194 187 262
'TNRC18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S603.  Gene #50: 'TNRC18 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TNRC18 MUTATED 3 2 4 0
TNRC18 WILD-TYPE 133 105 179 83
'TNRC18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S604.  Gene #50: 'TNRC18 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TNRC18 MUTATED 2 4 3
TNRC18 WILD-TYPE 220 180 100
'TNRC18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S605.  Gene #50: 'TNRC18 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TNRC18 MUTATED 2 3 3
TNRC18 WILD-TYPE 182 159 156
'TNRC18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S606.  Gene #50: 'TNRC18 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TNRC18 MUTATED 0 2 4 2
TNRC18 WILD-TYPE 90 136 184 87
'SLC6A3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S607.  Gene #51: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
SLC6A3 MUTATED 0 1 1 1
SLC6A3 WILD-TYPE 69 42 73 53
'SLC6A3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S608.  Gene #51: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
SLC6A3 MUTATED 0 1 1 1
SLC6A3 WILD-TYPE 63 49 47 78
'SLC6A3 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S609.  Gene #51: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
SLC6A3 MUTATED 0 2 1 0
SLC6A3 WILD-TYPE 77 91 44 60
'SLC6A3 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S610.  Gene #51: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
SLC6A3 MUTATED 2 0 1
SLC6A3 WILD-TYPE 136 61 75
'SLC6A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S611.  Gene #51: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
SLC6A3 MUTATED 3 9 0
SLC6A3 WILD-TYPE 292 472 7
'SLC6A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S612.  Gene #51: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
SLC6A3 MUTATED 3 4 0 3
SLC6A3 WILD-TYPE 157 228 64 163
'SLC6A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.65

Table S613.  Gene #51: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
SLC6A3 MUTATED 6 1 1
SLC6A3 WILD-TYPE 189 185 188
'SLC6A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0658 (Fisher's exact test), Q value = 0.49

Table S614.  Gene #51: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
SLC6A3 MUTATED 6 2 0
SLC6A3 WILD-TYPE 198 217 147
'SLC6A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S615.  Gene #51: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
SLC6A3 MUTATED 3 4 3
SLC6A3 WILD-TYPE 224 231 189
'SLC6A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S616.  Gene #51: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
SLC6A3 MUTATED 2 4 4
SLC6A3 WILD-TYPE 194 186 264
'SLC6A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.83

Table S617.  Gene #51: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
SLC6A3 MUTATED 2 4 1 2
SLC6A3 WILD-TYPE 134 103 182 81
'SLC6A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S618.  Gene #51: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
SLC6A3 MUTATED 4 2 3
SLC6A3 WILD-TYPE 218 182 100
'SLC6A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S619.  Gene #51: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
SLC6A3 MUTATED 3 2 4
SLC6A3 WILD-TYPE 181 160 155
'SLC6A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S620.  Gene #51: 'SLC6A3 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
SLC6A3 MUTATED 3 1 4 1
SLC6A3 WILD-TYPE 87 137 184 88
'DSP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S621.  Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
DSP MUTATED 3 0 2 3
DSP WILD-TYPE 66 43 72 51
'DSP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S622.  Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
DSP MUTATED 2 1 2 3
DSP WILD-TYPE 61 49 46 76
'DSP MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S623.  Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
DSP MUTATED 3 5 3 1
DSP WILD-TYPE 74 88 42 59
'DSP MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.0719 (Fisher's exact test), Q value = 0.51

Table S624.  Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
DSP MUTATED 6 0 6
DSP WILD-TYPE 132 61 70
'DSP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 0.51

Table S625.  Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
DSP MUTATED 13 8 0
DSP WILD-TYPE 282 473 7
'DSP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0453 (Fisher's exact test), Q value = 0.41

Table S626.  Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
DSP MUTATED 9 3 1 2
DSP WILD-TYPE 151 229 63 164

Figure S173.  Get High-res Image Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'DSP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S627.  Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
DSP MUTATED 6 2 6
DSP WILD-TYPE 189 184 183
'DSP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S628.  Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
DSP MUTATED 5 7 2
DSP WILD-TYPE 199 212 145
'DSP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S629.  Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
DSP MUTATED 5 3 2
DSP WILD-TYPE 222 232 190
'DSP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S630.  Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
DSP MUTATED 4 3 3
DSP WILD-TYPE 192 187 265
'DSP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S631.  Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
DSP MUTATED 3 3 2 1
DSP WILD-TYPE 133 104 181 82
'DSP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.22

Table S632.  Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
DSP MUTATED 5 0 4
DSP WILD-TYPE 217 184 99

Figure S174.  Get High-res Image Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'DSP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S633.  Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
DSP MUTATED 4 3 2
DSP WILD-TYPE 180 159 157
'DSP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S634.  Gene #52: 'DSP MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
DSP MUTATED 2 2 2 3
DSP WILD-TYPE 88 136 186 86
'ZNF292 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S635.  Gene #53: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
ZNF292 MUTATED 0 0 2 1
ZNF292 WILD-TYPE 69 43 72 53
'ZNF292 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.88

Table S636.  Gene #53: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
ZNF292 MUTATED 0 0 2 1
ZNF292 WILD-TYPE 63 50 46 78
'ZNF292 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S637.  Gene #53: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
ZNF292 MUTATED 0 2 1 0
ZNF292 WILD-TYPE 77 91 44 60
'ZNF292 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.98

Table S638.  Gene #53: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
ZNF292 MUTATED 1 0 2
ZNF292 WILD-TYPE 137 61 74
'ZNF292 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.94

Table S639.  Gene #53: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ZNF292 MUTATED 3 14 0
ZNF292 WILD-TYPE 292 467 7
'ZNF292 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.81

Table S640.  Gene #53: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ZNF292 MUTATED 2 4 1 8
ZNF292 WILD-TYPE 158 228 63 158
'ZNF292 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S641.  Gene #53: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ZNF292 MUTATED 3 7 5
ZNF292 WILD-TYPE 192 179 184
'ZNF292 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S642.  Gene #53: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ZNF292 MUTATED 5 5 5
ZNF292 WILD-TYPE 199 214 142
'ZNF292 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.79

Table S643.  Gene #53: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ZNF292 MUTATED 3 4 8
ZNF292 WILD-TYPE 224 231 184
'ZNF292 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0867 (Fisher's exact test), Q value = 0.58

Table S644.  Gene #53: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ZNF292 MUTATED 1 5 9
ZNF292 WILD-TYPE 195 185 259
'ZNF292 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S645.  Gene #53: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ZNF292 MUTATED 2 3 8 1
ZNF292 WILD-TYPE 134 104 175 82
'ZNF292 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.97

Table S646.  Gene #53: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ZNF292 MUTATED 4 8 2
ZNF292 WILD-TYPE 218 176 101
'ZNF292 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0837 (Fisher's exact test), Q value = 0.57

Table S647.  Gene #53: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ZNF292 MUTATED 2 4 8
ZNF292 WILD-TYPE 182 158 151
'ZNF292 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0543 (Fisher's exact test), Q value = 0.43

Table S648.  Gene #53: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ZNF292 MUTATED 0 3 10 1
ZNF292 WILD-TYPE 90 135 178 88
'KTELC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.85

Table S649.  Gene #54: 'KTELC1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
KTELC1 MUTATED 0 5 0
KTELC1 WILD-TYPE 295 476 7
'KTELC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.97

Table S650.  Gene #54: 'KTELC1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
KTELC1 MUTATED 0 4 0 1
KTELC1 WILD-TYPE 160 228 64 165
'KTELC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S651.  Gene #54: 'KTELC1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
KTELC1 MUTATED 2 1 1
KTELC1 WILD-TYPE 193 185 188
'KTELC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S652.  Gene #54: 'KTELC1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
KTELC1 MUTATED 3 1 0
KTELC1 WILD-TYPE 201 218 147
'KTELC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S653.  Gene #54: 'KTELC1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
KTELC1 MUTATED 1 3 1
KTELC1 WILD-TYPE 226 232 191
'KTELC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.85

Table S654.  Gene #54: 'KTELC1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
KTELC1 MUTATED 0 3 2
KTELC1 WILD-TYPE 196 187 266
'KTELC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.67

Table S655.  Gene #54: 'KTELC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
KTELC1 MUTATED 0 3 1 1
KTELC1 WILD-TYPE 136 104 182 82
'KTELC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00699 (Fisher's exact test), Q value = 0.13

Table S656.  Gene #54: 'KTELC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
KTELC1 MUTATED 1 0 4
KTELC1 WILD-TYPE 221 184 99

Figure S175.  Get High-res Image Gene #54: 'KTELC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'KTELC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S657.  Gene #54: 'KTELC1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
KTELC1 MUTATED 2 2 1
KTELC1 WILD-TYPE 182 160 158
'KTELC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.65

Table S658.  Gene #54: 'KTELC1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
KTELC1 MUTATED 0 4 1 0
KTELC1 WILD-TYPE 90 134 187 89
'TLR6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.93

Table S659.  Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
TLR6 MUTATED 0 0 3 1
TLR6 WILD-TYPE 69 43 71 53
'TLR6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0479 (Fisher's exact test), Q value = 0.42

Table S660.  Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
TLR6 MUTATED 0 0 3 1
TLR6 WILD-TYPE 63 50 45 78

Figure S176.  Get High-res Image Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TLR6 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S661.  Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
TLR6 MUTATED 0 2 1 2
TLR6 WILD-TYPE 77 91 44 58
'TLR6 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.97

Table S662.  Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
TLR6 MUTATED 1 2 2
TLR6 WILD-TYPE 137 59 74
'TLR6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.69

Table S663.  Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TLR6 MUTATED 6 2 0
TLR6 WILD-TYPE 289 479 7
'TLR6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00824 (Fisher's exact test), Q value = 0.14

Table S664.  Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TLR6 MUTATED 2 0 2 0
TLR6 WILD-TYPE 158 232 62 166

Figure S177.  Get High-res Image Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'TLR6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S665.  Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TLR6 MUTATED 2 1 1
TLR6 WILD-TYPE 193 185 188
'TLR6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S666.  Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TLR6 MUTATED 1 2 1
TLR6 WILD-TYPE 203 217 146
'TLR6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S667.  Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TLR6 MUTATED 2 0 2
TLR6 WILD-TYPE 225 235 190
'TLR6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S668.  Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TLR6 MUTATED 2 0 2
TLR6 WILD-TYPE 194 190 266
'TLR6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.95

Table S669.  Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TLR6 MUTATED 0 0 3 0
TLR6 WILD-TYPE 136 107 180 83
'TLR6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.9

Table S670.  Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TLR6 MUTATED 0 2 1
TLR6 WILD-TYPE 222 182 102
'TLR6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S671.  Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TLR6 MUTATED 1 0 2
TLR6 WILD-TYPE 183 162 157
'TLR6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S672.  Gene #55: 'TLR6 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TLR6 MUTATED 0 0 2 1
TLR6 WILD-TYPE 90 138 186 88
'EGFR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00713 (Fisher's exact test), Q value = 0.13

Table S673.  Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
EGFR MUTATED 20 7 31 10
EGFR WILD-TYPE 49 36 43 44

Figure S178.  Get High-res Image Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EGFR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0563 (Fisher's exact test), Q value = 0.45

Table S674.  Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
EGFR MUTATED 18 7 17 26
EGFR WILD-TYPE 45 43 31 53
'EGFR MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S675.  Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
EGFR MUTATED 22 27 8 17
EGFR WILD-TYPE 55 66 37 43
'EGFR MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.74

Table S676.  Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
EGFR MUTATED 30 19 25
EGFR WILD-TYPE 108 42 51
'EGFR MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S677.  Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
EGFR MUTATED 95 11 1
EGFR WILD-TYPE 200 470 6

Figure S179.  Get High-res Image Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'EGFR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S678.  Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
EGFR MUTATED 47 0 6 3
EGFR WILD-TYPE 113 232 58 163

Figure S180.  Get High-res Image Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'EGFR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 0.51

Table S679.  Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
EGFR MUTATED 26 13 25
EGFR WILD-TYPE 169 173 164
'EGFR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0196 (Fisher's exact test), Q value = 0.25

Table S680.  Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
EGFR MUTATED 18 35 11
EGFR WILD-TYPE 186 184 136

Figure S181.  Get High-res Image Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

'EGFR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S681.  Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
EGFR MUTATED 71 0 9
EGFR WILD-TYPE 156 235 183

Figure S182.  Get High-res Image Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'EGFR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S682.  Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
EGFR MUTATED 69 2 9
EGFR WILD-TYPE 127 188 259

Figure S183.  Get High-res Image Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'EGFR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.17

Table S683.  Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
EGFR MUTATED 11 11 13 0
EGFR WILD-TYPE 125 96 170 83

Figure S184.  Get High-res Image Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'EGFR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S684.  Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
EGFR MUTATED 1 9 25
EGFR WILD-TYPE 221 175 78

Figure S185.  Get High-res Image Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'EGFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S685.  Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
EGFR MUTATED 23 0 12
EGFR WILD-TYPE 161 162 147

Figure S186.  Get High-res Image Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'EGFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00041

Table S686.  Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
EGFR MUTATED 0 0 8 27
EGFR WILD-TYPE 90 138 180 62

Figure S187.  Get High-res Image Gene #56: 'EGFR MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ACADS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S687.  Gene #57: 'ACADS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
ACADS MUTATED 2 0 0 1
ACADS WILD-TYPE 67 43 74 53
'ACADS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S688.  Gene #57: 'ACADS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
ACADS MUTATED 2 1 0 0
ACADS WILD-TYPE 61 49 48 79
'ACADS MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S689.  Gene #57: 'ACADS MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
ACADS MUTATED 2 0 0 1
ACADS WILD-TYPE 75 93 45 59
'ACADS MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S690.  Gene #57: 'ACADS MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
ACADS MUTATED 1 1 1
ACADS WILD-TYPE 137 60 75
'ACADS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00812 (Fisher's exact test), Q value = 0.14

Table S691.  Gene #57: 'ACADS MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ACADS MUTATED 3 1 1
ACADS WILD-TYPE 292 480 6

Figure S188.  Get High-res Image Gene #57: 'ACADS MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'ACADS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.41

Table S692.  Gene #57: 'ACADS MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ACADS MUTATED 3 0 0 0
ACADS WILD-TYPE 157 232 64 166

Figure S189.  Get High-res Image Gene #57: 'ACADS MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'TMEM216 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.98

Table S693.  Gene #58: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TMEM216 MUTATED 0 3 0
TMEM216 WILD-TYPE 295 478 7
'TMEM216 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S694.  Gene #58: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TMEM216 MUTATED 0 2 0 1
TMEM216 WILD-TYPE 160 230 64 165
'TMEM216 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S695.  Gene #58: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TMEM216 MUTATED 1 2 0
TMEM216 WILD-TYPE 194 184 189
'TMEM216 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.85

Table S696.  Gene #58: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TMEM216 MUTATED 1 0 2
TMEM216 WILD-TYPE 203 219 145
'TMEM216 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.97

Table S697.  Gene #58: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TMEM216 MUTATED 0 1 2
TMEM216 WILD-TYPE 227 234 190
'TMEM216 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S698.  Gene #58: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TMEM216 MUTATED 0 1 2
TMEM216 WILD-TYPE 196 189 266
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S699.  Gene #58: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TMEM216 MUTATED 0 1 1 1
TMEM216 WILD-TYPE 136 106 182 82
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S700.  Gene #58: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TMEM216 MUTATED 1 2 0
TMEM216 WILD-TYPE 221 182 103
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.98

Table S701.  Gene #58: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TMEM216 MUTATED 0 2 1
TMEM216 WILD-TYPE 184 160 158
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S702.  Gene #58: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TMEM216 MUTATED 0 2 1 0
TMEM216 WILD-TYPE 90 136 187 89
'ARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S703.  Gene #59: 'ARID2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ARID2 MUTATED 3 10 0
ARID2 WILD-TYPE 292 471 7
'ARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S704.  Gene #59: 'ARID2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ARID2 MUTATED 3 5 1 2
ARID2 WILD-TYPE 157 227 63 164
'ARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S705.  Gene #59: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ARID2 MUTATED 3 2 3
ARID2 WILD-TYPE 192 184 186
'ARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S706.  Gene #59: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ARID2 MUTATED 4 3 1
ARID2 WILD-TYPE 200 216 146
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S707.  Gene #59: 'ARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ARID2 MUTATED 4 4 4
ARID2 WILD-TYPE 223 231 188
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.76

Table S708.  Gene #59: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ARID2 MUTATED 1 6 5
ARID2 WILD-TYPE 195 184 263
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S709.  Gene #59: 'ARID2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ARID2 MUTATED 2 4 3 1
ARID2 WILD-TYPE 134 103 180 82
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S710.  Gene #59: 'ARID2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ARID2 MUTATED 3 3 4
ARID2 WILD-TYPE 219 181 99
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S711.  Gene #59: 'ARID2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ARID2 MUTATED 3 2 5
ARID2 WILD-TYPE 181 160 154
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S712.  Gene #59: 'ARID2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ARID2 MUTATED 1 1 5 3
ARID2 WILD-TYPE 89 137 183 86
'FAM83D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S713.  Gene #60: 'FAM83D MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
FAM83D MUTATED 3 2 0
FAM83D WILD-TYPE 292 479 7
'FAM83D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S714.  Gene #60: 'FAM83D MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
FAM83D MUTATED 3 1 0 1
FAM83D WILD-TYPE 157 231 64 165
'FAM83D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.87

Table S715.  Gene #60: 'FAM83D MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
FAM83D MUTATED 0 2 1
FAM83D WILD-TYPE 195 184 188
'FAM83D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S716.  Gene #60: 'FAM83D MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
FAM83D MUTATED 1 2 0
FAM83D WILD-TYPE 203 217 147
'FAM83D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S717.  Gene #60: 'FAM83D MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
FAM83D MUTATED 2 1 1
FAM83D WILD-TYPE 225 234 191
'FAM83D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S718.  Gene #60: 'FAM83D MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
FAM83D MUTATED 2 1 1
FAM83D WILD-TYPE 194 189 267
'FAM83D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S719.  Gene #60: 'FAM83D MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
FAM83D MUTATED 1 1 1 0
FAM83D WILD-TYPE 135 106 182 83
'FAM83D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0533 (Fisher's exact test), Q value = 0.43

Table S720.  Gene #60: 'FAM83D MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
FAM83D MUTATED 0 1 2
FAM83D WILD-TYPE 222 183 101
'FAM83D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S721.  Gene #60: 'FAM83D MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
FAM83D MUTATED 1 1 1
FAM83D WILD-TYPE 183 161 158
'FAM83D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S722.  Gene #60: 'FAM83D MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
FAM83D MUTATED 0 1 1 1
FAM83D WILD-TYPE 90 137 187 88
'NEU2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.88

Table S723.  Gene #61: 'NEU2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
NEU2 MUTATED 1 0 0 2
NEU2 WILD-TYPE 68 43 74 52
'NEU2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S724.  Gene #61: 'NEU2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
NEU2 MUTATED 0 1 0 2
NEU2 WILD-TYPE 63 49 48 77
'NEU2 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S725.  Gene #61: 'NEU2 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
NEU2 MUTATED 1 1 1 0
NEU2 WILD-TYPE 76 92 44 60
'NEU2 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S726.  Gene #61: 'NEU2 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
NEU2 MUTATED 2 0 1
NEU2 WILD-TYPE 136 61 75
'NEU2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S727.  Gene #61: 'NEU2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
NEU2 MUTATED 3 5 0
NEU2 WILD-TYPE 292 476 7
'NEU2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S728.  Gene #61: 'NEU2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
NEU2 MUTATED 1 3 0 1
NEU2 WILD-TYPE 159 229 64 165
'NEU2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0897 (Fisher's exact test), Q value = 0.59

Table S729.  Gene #61: 'NEU2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
NEU2 MUTATED 0 2 4
NEU2 WILD-TYPE 195 184 185
'NEU2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.81

Table S730.  Gene #61: 'NEU2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
NEU2 MUTATED 0 4 2
NEU2 WILD-TYPE 204 215 145
'NEU2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S731.  Gene #61: 'NEU2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
NEU2 MUTATED 2 3 2
NEU2 WILD-TYPE 225 232 190
'NEU2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S732.  Gene #61: 'NEU2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
NEU2 MUTATED 3 3 1
NEU2 WILD-TYPE 193 187 267
'NEU2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.98

Table S733.  Gene #61: 'NEU2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
NEU2 MUTATED 0 1 2 2
NEU2 WILD-TYPE 136 106 181 81
'NEU2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S734.  Gene #61: 'NEU2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
NEU2 MUTATED 2 2 1
NEU2 WILD-TYPE 220 182 102
'NEU2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S735.  Gene #61: 'NEU2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
NEU2 MUTATED 1 1 3
NEU2 WILD-TYPE 183 161 156
'NEU2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S736.  Gene #61: 'NEU2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
NEU2 MUTATED 0 1 3 1
NEU2 WILD-TYPE 90 137 185 88
'LUM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S737.  Gene #62: 'LUM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
LUM MUTATED 1 0 2 0
LUM WILD-TYPE 68 43 72 54
'LUM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.67

Table S738.  Gene #62: 'LUM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
LUM MUTATED 1 0 2 0
LUM WILD-TYPE 62 50 46 79
'LUM MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S739.  Gene #62: 'LUM MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
LUM MUTATED 1 1 1 2
LUM WILD-TYPE 76 92 44 58
'LUM MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S740.  Gene #62: 'LUM MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
LUM MUTATED 2 2 1
LUM WILD-TYPE 136 59 75
'LUM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.81

Table S741.  Gene #62: 'LUM MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
LUM MUTATED 5 2 0
LUM WILD-TYPE 290 479 7
'LUM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.98

Table S742.  Gene #62: 'LUM MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
LUM MUTATED 2 1 1 0
LUM WILD-TYPE 158 231 63 166
'LUM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S743.  Gene #62: 'LUM MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
LUM MUTATED 1 2 1
LUM WILD-TYPE 194 184 188
'LUM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S744.  Gene #62: 'LUM MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
LUM MUTATED 1 2 1
LUM WILD-TYPE 203 217 146
'LUM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S745.  Gene #62: 'LUM MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
LUM MUTATED 2 0 1
LUM WILD-TYPE 225 235 191
'LUM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S746.  Gene #62: 'LUM MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
LUM MUTATED 1 1 1
LUM WILD-TYPE 195 189 267
'WRN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S747.  Gene #63: 'WRN MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
WRN MUTATED 1 5 0
WRN WILD-TYPE 294 476 7
'WRN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.42

Table S748.  Gene #63: 'WRN MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
WRN MUTATED 1 0 0 4
WRN WILD-TYPE 159 232 64 162

Figure S190.  Get High-res Image Gene #63: 'WRN MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'WRN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S749.  Gene #63: 'WRN MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
WRN MUTATED 2 2 1
WRN WILD-TYPE 193 184 188
'WRN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S750.  Gene #63: 'WRN MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
WRN MUTATED 2 1 2
WRN WILD-TYPE 202 218 145
'WRN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S751.  Gene #63: 'WRN MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
WRN MUTATED 2 2 2
WRN WILD-TYPE 225 233 190
'WRN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S752.  Gene #63: 'WRN MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
WRN MUTATED 1 1 4
WRN WILD-TYPE 195 189 264
'WRN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.45

Table S753.  Gene #63: 'WRN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
WRN MUTATED 0 1 1 3
WRN WILD-TYPE 136 106 182 80
'WRN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S754.  Gene #63: 'WRN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
WRN MUTATED 2 2 1
WRN WILD-TYPE 220 182 102
'WRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0447 (Fisher's exact test), Q value = 0.41

Table S755.  Gene #63: 'WRN MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
WRN MUTATED 0 4 1
WRN WILD-TYPE 184 158 158

Figure S191.  Get High-res Image Gene #63: 'WRN MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'WRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S756.  Gene #63: 'WRN MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
WRN MUTATED 0 3 2 0
WRN WILD-TYPE 90 135 186 89
'TMEM184A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S757.  Gene #64: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TMEM184A MUTATED 1 2 0
TMEM184A WILD-TYPE 294 479 7
'TMEM184A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S758.  Gene #64: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TMEM184A MUTATED 1 0 0 2
TMEM184A WILD-TYPE 159 232 64 164
'TMEM184A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S759.  Gene #64: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TMEM184A MUTATED 1 1 1
TMEM184A WILD-TYPE 194 185 188
'TMEM184A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S760.  Gene #64: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TMEM184A MUTATED 1 2 0
TMEM184A WILD-TYPE 203 217 147
'TMEM184A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.85

Table S761.  Gene #64: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TMEM184A MUTATED 1 0 2
TMEM184A WILD-TYPE 226 235 190
'TMEM184A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S762.  Gene #64: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TMEM184A MUTATED 1 0 2
TMEM184A WILD-TYPE 195 190 266
'TMEM184A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S763.  Gene #64: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TMEM184A MUTATED 1 0 2 0
TMEM184A WILD-TYPE 135 107 181 83
'TMEM184A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.9

Table S764.  Gene #64: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TMEM184A MUTATED 0 2 1
TMEM184A WILD-TYPE 222 182 102
'TMEM184A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S765.  Gene #64: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TMEM184A MUTATED 1 0 2
TMEM184A WILD-TYPE 183 162 157
'TMEM184A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S766.  Gene #64: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TMEM184A MUTATED 0 0 2 1
TMEM184A WILD-TYPE 90 138 186 88
'ZNF512B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.85

Table S767.  Gene #65: 'ZNF512B MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ZNF512B MUTATED 0 5 0
ZNF512B WILD-TYPE 295 476 7
'ZNF512B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S768.  Gene #65: 'ZNF512B MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ZNF512B MUTATED 1 3 0 1
ZNF512B WILD-TYPE 159 229 64 165
'ZNF512B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S769.  Gene #65: 'ZNF512B MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ZNF512B MUTATED 2 1 2
ZNF512B WILD-TYPE 193 185 187
'ZNF512B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S770.  Gene #65: 'ZNF512B MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ZNF512B MUTATED 2 2 1
ZNF512B WILD-TYPE 202 217 146
'ZNF512B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S771.  Gene #65: 'ZNF512B MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ZNF512B MUTATED 1 2 2
ZNF512B WILD-TYPE 226 233 190
'ZNF512B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S772.  Gene #65: 'ZNF512B MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ZNF512B MUTATED 0 2 3
ZNF512B WILD-TYPE 196 188 265
'ZNF512B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S773.  Gene #65: 'ZNF512B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ZNF512B MUTATED 1 1 2 1
ZNF512B WILD-TYPE 135 106 181 82
'ZNF512B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S774.  Gene #65: 'ZNF512B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ZNF512B MUTATED 2 2 1
ZNF512B WILD-TYPE 220 182 102
'ZNF512B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S775.  Gene #65: 'ZNF512B MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ZNF512B MUTATED 1 1 3
ZNF512B WILD-TYPE 183 161 156
'ZNF512B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.93

Table S776.  Gene #65: 'ZNF512B MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ZNF512B MUTATED 1 0 4 0
ZNF512B WILD-TYPE 89 138 184 89
'PRCP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.85

Table S777.  Gene #66: 'PRCP MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PRCP MUTATED 3 1 0
PRCP WILD-TYPE 292 480 7
'PRCP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0466 (Fisher's exact test), Q value = 0.41

Table S778.  Gene #66: 'PRCP MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
PRCP MUTATED 3 0 0 0
PRCP WILD-TYPE 157 232 64 166

Figure S192.  Get High-res Image Gene #66: 'PRCP MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'PRCP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S779.  Gene #66: 'PRCP MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
PRCP MUTATED 2 1 0
PRCP WILD-TYPE 193 185 189
'PRCP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.95

Table S780.  Gene #66: 'PRCP MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
PRCP MUTATED 0 1 2
PRCP WILD-TYPE 204 218 145
'PRCP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S781.  Gene #66: 'PRCP MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
PRCP MUTATED 2 0 1
PRCP WILD-TYPE 225 235 191
'PRCP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S782.  Gene #66: 'PRCP MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
PRCP MUTATED 2 0 1
PRCP WILD-TYPE 194 190 267
'ATF7IP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S783.  Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
ATF7IP2 MUTATED 1 0 2 1
ATF7IP2 WILD-TYPE 68 43 72 53
'ATF7IP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S784.  Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
ATF7IP2 MUTATED 1 1 1 1
ATF7IP2 WILD-TYPE 62 49 47 78
'ATF7IP2 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.97

Table S785.  Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
ATF7IP2 MUTATED 1 1 0 3
ATF7IP2 WILD-TYPE 76 92 45 57
'ATF7IP2 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.65

Table S786.  Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
ATF7IP2 MUTATED 1 3 1
ATF7IP2 WILD-TYPE 137 58 75
'ATF7IP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00339 (Fisher's exact test), Q value = 0.072

Table S787.  Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ATF7IP2 MUTATED 6 1 1
ATF7IP2 WILD-TYPE 289 480 6

Figure S193.  Get High-res Image Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'ATF7IP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.99

Table S788.  Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ATF7IP2 MUTATED 2 1 1 0
ATF7IP2 WILD-TYPE 158 231 63 166
'ATF7IP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S789.  Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ATF7IP2 MUTATED 2 2 1
ATF7IP2 WILD-TYPE 193 184 188
'ATF7IP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S790.  Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ATF7IP2 MUTATED 2 2 1
ATF7IP2 WILD-TYPE 202 217 146
'ATF7IP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.26

Table S791.  Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ATF7IP2 MUTATED 4 0 0
ATF7IP2 WILD-TYPE 223 235 192

Figure S194.  Get High-res Image Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'ATF7IP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.64

Table S792.  Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ATF7IP2 MUTATED 3 1 0
ATF7IP2 WILD-TYPE 193 189 268
'ATF7IP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S793.  Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ATF7IP2 MUTATED 1 1 1 0
ATF7IP2 WILD-TYPE 135 106 182 83
'ATF7IP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00849 (Fisher's exact test), Q value = 0.14

Table S794.  Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ATF7IP2 MUTATED 0 0 3
ATF7IP2 WILD-TYPE 222 184 100

Figure S195.  Get High-res Image Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'ATF7IP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S795.  Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ATF7IP2 MUTATED 2 0 1
ATF7IP2 WILD-TYPE 182 162 158
'ATF7IP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0886 (Fisher's exact test), Q value = 0.59

Table S796.  Gene #67: 'ATF7IP2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ATF7IP2 MUTATED 0 1 0 2
ATF7IP2 WILD-TYPE 90 137 188 87
'DNMT3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.32

Table S797.  Gene #68: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
DNMT3A MUTATED 0 10 0
DNMT3A WILD-TYPE 295 471 7

Figure S196.  Get High-res Image Gene #68: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'DNMT3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S798.  Gene #68: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
DNMT3A MUTATED 2 4 1 3
DNMT3A WILD-TYPE 158 228 63 163
'DNMT3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.67

Table S799.  Gene #68: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
DNMT3A MUTATED 3 4 0
DNMT3A WILD-TYPE 192 182 189
'DNMT3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S800.  Gene #68: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
DNMT3A MUTATED 3 1 3
DNMT3A WILD-TYPE 201 218 144
'DNMT3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.88

Table S801.  Gene #68: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
DNMT3A MUTATED 1 5 4
DNMT3A WILD-TYPE 226 230 188
'DNMT3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0859 (Fisher's exact test), Q value = 0.58

Table S802.  Gene #68: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
DNMT3A MUTATED 0 4 6
DNMT3A WILD-TYPE 196 186 262
'DNMT3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S803.  Gene #68: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
DNMT3A MUTATED 1 2 6 1
DNMT3A WILD-TYPE 135 105 177 82
'DNMT3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.41

Table S804.  Gene #68: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
DNMT3A MUTATED 1 5 4
DNMT3A WILD-TYPE 221 179 99

Figure S197.  Get High-res Image Gene #68: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'DNMT3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S805.  Gene #68: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
DNMT3A MUTATED 3 4 3
DNMT3A WILD-TYPE 181 158 156
'DNMT3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S806.  Gene #68: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
DNMT3A MUTATED 1 3 4 2
DNMT3A WILD-TYPE 89 135 184 87
'PROKR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S807.  Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
PROKR2 MUTATED 1 0 3 1
PROKR2 WILD-TYPE 68 43 71 53
'PROKR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S808.  Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
PROKR2 MUTATED 1 1 2 1
PROKR2 WILD-TYPE 62 49 46 78
'PROKR2 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S809.  Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
PROKR2 MUTATED 1 1 1 2
PROKR2 WILD-TYPE 76 92 44 58
'PROKR2 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.85

Table S810.  Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
PROKR2 MUTATED 1 1 3
PROKR2 WILD-TYPE 137 60 73
'PROKR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.43

Table S811.  Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PROKR2 MUTATED 7 2 0
PROKR2 WILD-TYPE 288 479 7
'PROKR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.94

Table S812.  Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
PROKR2 MUTATED 3 2 0 0
PROKR2 WILD-TYPE 157 230 64 166
'PROKR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S813.  Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
PROKR2 MUTATED 0 1 2
PROKR2 WILD-TYPE 195 185 187
'PROKR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S814.  Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
PROKR2 MUTATED 0 2 1
PROKR2 WILD-TYPE 204 217 146
'PROKR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0904 (Fisher's exact test), Q value = 0.59

Table S815.  Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
PROKR2 MUTATED 6 1 1
PROKR2 WILD-TYPE 221 234 191
'PROKR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.38

Table S816.  Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
PROKR2 MUTATED 6 1 1
PROKR2 WILD-TYPE 190 189 267

Figure S198.  Get High-res Image Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'PROKR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.96

Table S817.  Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
PROKR2 MUTATED 0 0 3 0
PROKR2 WILD-TYPE 136 107 180 83
'PROKR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S818.  Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
PROKR2 MUTATED 1 1 1
PROKR2 WILD-TYPE 221 183 102
'PROKR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S819.  Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
PROKR2 MUTATED 1 1 1
PROKR2 WILD-TYPE 183 161 158
'PROKR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S820.  Gene #69: 'PROKR2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
PROKR2 MUTATED 0 1 1 1
PROKR2 WILD-TYPE 90 137 187 88
'C10ORF76 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S821.  Gene #70: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
C10ORF76 MUTATED 2 2 0
C10ORF76 WILD-TYPE 293 479 7
'C10ORF76 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.6

Table S822.  Gene #70: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
C10ORF76 MUTATED 3 0 0 1
C10ORF76 WILD-TYPE 157 232 64 165
'C10ORF76 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.79

Table S823.  Gene #70: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
C10ORF76 MUTATED 3 0 1
C10ORF76 WILD-TYPE 224 235 191
'C10ORF76 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S824.  Gene #70: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
C10ORF76 MUTATED 2 1 1
C10ORF76 WILD-TYPE 194 189 267
'C10ORF76 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S825.  Gene #70: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
C10ORF76 MUTATED 0 2 1 0
C10ORF76 WILD-TYPE 136 105 182 83
'C10ORF76 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 0.43

Table S826.  Gene #70: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
C10ORF76 MUTATED 0 1 2
C10ORF76 WILD-TYPE 222 183 101
'C10ORF76 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S827.  Gene #70: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
C10ORF76 MUTATED 1 0 2
C10ORF76 WILD-TYPE 183 162 157
'C10ORF76 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S828.  Gene #70: 'C10ORF76 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
C10ORF76 MUTATED 0 0 2 1
C10ORF76 WILD-TYPE 90 138 186 88
'ZBTB20 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0023

Table S829.  Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ZBTB20 MUTATED 0 22 0
ZBTB20 WILD-TYPE 295 459 7

Figure S199.  Get High-res Image Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'ZBTB20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0011

Table S830.  Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ZBTB20 MUTATED 2 3 0 16
ZBTB20 WILD-TYPE 158 229 64 150

Figure S200.  Get High-res Image Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'ZBTB20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 0.57

Table S831.  Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ZBTB20 MUTATED 5 9 2
ZBTB20 WILD-TYPE 190 177 187
'ZBTB20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0931 (Fisher's exact test), Q value = 0.59

Table S832.  Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ZBTB20 MUTATED 3 5 8
ZBTB20 WILD-TYPE 201 214 139
'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0028

Table S833.  Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ZBTB20 MUTATED 3 3 16
ZBTB20 WILD-TYPE 224 232 176

Figure S201.  Get High-res Image Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0014

Table S834.  Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ZBTB20 MUTATED 0 3 19
ZBTB20 WILD-TYPE 196 187 249

Figure S202.  Get High-res Image Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.79

Table S835.  Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ZBTB20 MUTATED 3 2 12 4
ZBTB20 WILD-TYPE 133 105 171 79
'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 0.25

Table S836.  Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ZBTB20 MUTATED 5 14 2
ZBTB20 WILD-TYPE 217 170 101

Figure S203.  Get High-res Image Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.39

Table S837.  Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ZBTB20 MUTATED 3 7 11
ZBTB20 WILD-TYPE 181 155 148

Figure S204.  Get High-res Image Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0317 (Fisher's exact test), Q value = 0.32

Table S838.  Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ZBTB20 MUTATED 1 5 14 1
ZBTB20 WILD-TYPE 89 133 174 88

Figure S205.  Get High-res Image Gene #71: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KRT15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S839.  Gene #72: 'KRT15 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
KRT15 MUTATED 2 6 0
KRT15 WILD-TYPE 293 475 7
'KRT15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S840.  Gene #72: 'KRT15 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
KRT15 MUTATED 0 3 1 2
KRT15 WILD-TYPE 160 229 63 164
'KRT15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S841.  Gene #72: 'KRT15 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
KRT15 MUTATED 1 1 2
KRT15 WILD-TYPE 194 185 187
'KRT15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S842.  Gene #72: 'KRT15 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
KRT15 MUTATED 2 1 1
KRT15 WILD-TYPE 202 218 146
'KRT15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S843.  Gene #72: 'KRT15 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
KRT15 MUTATED 3 1 3
KRT15 WILD-TYPE 224 234 189
'KRT15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S844.  Gene #72: 'KRT15 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
KRT15 MUTATED 2 2 3
KRT15 WILD-TYPE 194 188 265
'KRT15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S845.  Gene #72: 'KRT15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
KRT15 MUTATED 3 0 2 1
KRT15 WILD-TYPE 133 107 181 82
'KRT15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S846.  Gene #72: 'KRT15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
KRT15 MUTATED 2 3 1
KRT15 WILD-TYPE 220 181 102
'KRT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S847.  Gene #72: 'KRT15 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
KRT15 MUTATED 2 2 2
KRT15 WILD-TYPE 182 160 157
'KRT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S848.  Gene #72: 'KRT15 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
KRT15 MUTATED 1 2 2 1
KRT15 WILD-TYPE 89 136 186 88
'G6PC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S849.  Gene #73: 'G6PC MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
G6PC MUTATED 2 5 0
G6PC WILD-TYPE 293 476 7
'G6PC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.95

Table S850.  Gene #73: 'G6PC MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
G6PC MUTATED 4 1 0 2
G6PC WILD-TYPE 156 231 64 164
'G6PC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S851.  Gene #73: 'G6PC MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
G6PC MUTATED 2 4 1
G6PC WILD-TYPE 193 182 188
'G6PC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S852.  Gene #73: 'G6PC MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
G6PC MUTATED 3 3 1
G6PC WILD-TYPE 201 216 146
'G6PC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S853.  Gene #73: 'G6PC MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
G6PC MUTATED 2 2 3
G6PC WILD-TYPE 225 233 189
'G6PC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S854.  Gene #73: 'G6PC MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
G6PC MUTATED 2 2 3
G6PC WILD-TYPE 194 188 265
'G6PC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S855.  Gene #73: 'G6PC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
G6PC MUTATED 0 2 3 1
G6PC WILD-TYPE 136 105 180 82
'G6PC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.78

Table S856.  Gene #73: 'G6PC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
G6PC MUTATED 1 2 3
G6PC WILD-TYPE 221 182 100
'G6PC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.97

Table S857.  Gene #73: 'G6PC MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
G6PC MUTATED 1 1 4
G6PC WILD-TYPE 183 161 155
'G6PC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S858.  Gene #73: 'G6PC MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
G6PC MUTATED 1 1 2 2
G6PC WILD-TYPE 89 137 186 87
'SERPING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S859.  Gene #74: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
SERPING1 MUTATED 2 2 0
SERPING1 WILD-TYPE 293 479 7
'SERPING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S860.  Gene #74: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
SERPING1 MUTATED 2 1 0 1
SERPING1 WILD-TYPE 158 231 64 165
'SERPING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S861.  Gene #74: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
SERPING1 MUTATED 2 1 1
SERPING1 WILD-TYPE 193 185 188
'SERPING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.74

Table S862.  Gene #74: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
SERPING1 MUTATED 3 0 1
SERPING1 WILD-TYPE 201 219 146
'SERPING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.97

Table S863.  Gene #74: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
SERPING1 MUTATED 0 1 2
SERPING1 WILD-TYPE 227 234 190
'SERPING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S864.  Gene #74: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
SERPING1 MUTATED 0 1 2
SERPING1 WILD-TYPE 196 189 266
'SERPING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S865.  Gene #74: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
SERPING1 MUTATED 0 1 2 0
SERPING1 WILD-TYPE 136 106 181 83
'SERPING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S866.  Gene #74: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
SERPING1 MUTATED 1 2 0
SERPING1 WILD-TYPE 221 182 103
'SERPING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S867.  Gene #74: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
SERPING1 MUTATED 1 0 2
SERPING1 WILD-TYPE 183 162 157
'SERPING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S868.  Gene #74: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
SERPING1 MUTATED 1 0 2 0
SERPING1 WILD-TYPE 89 138 186 89
'ZDHHC4 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.8

Table S869.  Gene #75: 'ZDHHC4 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
ZDHHC4 MUTATED 0 3 0 0
ZDHHC4 WILD-TYPE 77 90 45 60
'ZDHHC4 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S870.  Gene #75: 'ZDHHC4 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
ZDHHC4 MUTATED 2 0 1
ZDHHC4 WILD-TYPE 136 61 75
'ZDHHC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.85

Table S871.  Gene #75: 'ZDHHC4 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ZDHHC4 MUTATED 3 1 0
ZDHHC4 WILD-TYPE 292 480 7
'ZDHHC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.19

Table S872.  Gene #75: 'ZDHHC4 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ZDHHC4 MUTATED 4 0 0 0
ZDHHC4 WILD-TYPE 156 232 64 166

Figure S206.  Get High-res Image Gene #75: 'ZDHHC4 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'ZDHHC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S873.  Gene #75: 'ZDHHC4 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ZDHHC4 MUTATED 1 1 1
ZDHHC4 WILD-TYPE 194 185 188
'ZDHHC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S874.  Gene #75: 'ZDHHC4 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ZDHHC4 MUTATED 2 1 0
ZDHHC4 WILD-TYPE 202 218 147
'CPEB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.98

Table S875.  Gene #76: 'CPEB4 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
CPEB4 MUTATED 1 6 0
CPEB4 WILD-TYPE 294 475 7
'CPEB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S876.  Gene #76: 'CPEB4 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
CPEB4 MUTATED 1 1 1 3
CPEB4 WILD-TYPE 159 231 63 163
'CPEB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S877.  Gene #76: 'CPEB4 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
CPEB4 MUTATED 3 1 2
CPEB4 WILD-TYPE 192 185 187
'CPEB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S878.  Gene #76: 'CPEB4 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
CPEB4 MUTATED 3 2 1
CPEB4 WILD-TYPE 201 217 146
'CPEB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S879.  Gene #76: 'CPEB4 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
CPEB4 MUTATED 2 2 3
CPEB4 WILD-TYPE 225 233 189
'CPEB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S880.  Gene #76: 'CPEB4 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
CPEB4 MUTATED 1 2 4
CPEB4 WILD-TYPE 195 188 264
'CPEB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S881.  Gene #76: 'CPEB4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
CPEB4 MUTATED 1 1 2 2
CPEB4 WILD-TYPE 135 106 181 81
'CPEB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S882.  Gene #76: 'CPEB4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
CPEB4 MUTATED 3 2 1
CPEB4 WILD-TYPE 219 182 102
'CPEB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S883.  Gene #76: 'CPEB4 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
CPEB4 MUTATED 1 2 3
CPEB4 WILD-TYPE 183 160 156
'CPEB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S884.  Gene #76: 'CPEB4 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
CPEB4 MUTATED 0 3 3 0
CPEB4 WILD-TYPE 90 135 185 89
'EEF1A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S885.  Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
EEF1A1 MUTATED 1 0 3 0
EEF1A1 WILD-TYPE 68 43 71 54
'EEF1A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.85

Table S886.  Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
EEF1A1 MUTATED 0 0 2 2
EEF1A1 WILD-TYPE 63 50 46 77
'EEF1A1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S887.  Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
EEF1A1 MUTATED 0 2 1 1
EEF1A1 WILD-TYPE 77 91 44 59
'EEF1A1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S888.  Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
EEF1A1 MUTATED 1 1 2
EEF1A1 WILD-TYPE 137 60 74
'EEF1A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.69

Table S889.  Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
EEF1A1 MUTATED 6 2 0
EEF1A1 WILD-TYPE 289 479 7
'EEF1A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S890.  Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
EEF1A1 MUTATED 3 1 0 1
EEF1A1 WILD-TYPE 157 231 64 165
'EEF1A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.36

Table S891.  Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
EEF1A1 MUTATED 4 0 0
EEF1A1 WILD-TYPE 191 186 189

Figure S207.  Get High-res Image Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

'EEF1A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S892.  Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
EEF1A1 MUTATED 2 2 0
EEF1A1 WILD-TYPE 202 217 147
'EEF1A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.88

Table S893.  Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
EEF1A1 MUTATED 4 2 0
EEF1A1 WILD-TYPE 223 233 192
'EEF1A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S894.  Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
EEF1A1 MUTATED 3 2 1
EEF1A1 WILD-TYPE 193 188 267
'EEF1A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.26

Table S895.  Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
EEF1A1 MUTATED 0 3 0 1
EEF1A1 WILD-TYPE 136 104 183 82

Figure S208.  Get High-res Image Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'EEF1A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.85

Table S896.  Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
EEF1A1 MUTATED 2 0 2
EEF1A1 WILD-TYPE 220 184 101
'EEF1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S897.  Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
EEF1A1 MUTATED 2 1 1
EEF1A1 WILD-TYPE 182 161 158
'EEF1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S898.  Gene #77: 'EEF1A1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
EEF1A1 MUTATED 1 1 1 1
EEF1A1 WILD-TYPE 89 137 187 88
'PDHA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S899.  Gene #78: 'PDHA1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PDHA1 MUTATED 2 4 0
PDHA1 WILD-TYPE 293 477 7
'PDHA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S900.  Gene #78: 'PDHA1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
PDHA1 MUTATED 1 1 0 3
PDHA1 WILD-TYPE 159 231 64 163
'PDHA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S901.  Gene #78: 'PDHA1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
PDHA1 MUTATED 3 1 2
PDHA1 WILD-TYPE 192 185 187
'PDHA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.98

Table S902.  Gene #78: 'PDHA1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
PDHA1 MUTATED 4 1 1
PDHA1 WILD-TYPE 200 218 146
'PDHA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S903.  Gene #78: 'PDHA1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
PDHA1 MUTATED 2 3 1
PDHA1 WILD-TYPE 225 232 191
'PDHA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S904.  Gene #78: 'PDHA1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
PDHA1 MUTATED 2 1 3
PDHA1 WILD-TYPE 194 189 265
'PDHA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S905.  Gene #78: 'PDHA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
PDHA1 MUTATED 2 1 2 0
PDHA1 WILD-TYPE 134 106 181 83
'PDHA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S906.  Gene #78: 'PDHA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
PDHA1 MUTATED 3 1 1
PDHA1 WILD-TYPE 219 183 102
'PDHA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S907.  Gene #78: 'PDHA1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
PDHA1 MUTATED 1 3 1
PDHA1 WILD-TYPE 183 159 158
'PDHA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S908.  Gene #78: 'PDHA1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
PDHA1 MUTATED 0 3 1 1
PDHA1 WILD-TYPE 90 135 187 88
'FAM123C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.27

Table S909.  Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
FAM123C MUTATED 3 3 0 0
FAM123C WILD-TYPE 66 40 74 54

Figure S209.  Get High-res Image Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FAM123C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S910.  Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
FAM123C MUTATED 3 1 0 2
FAM123C WILD-TYPE 60 49 48 77
'FAM123C MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S911.  Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
FAM123C MUTATED 2 3 0 1
FAM123C WILD-TYPE 75 90 45 59
'FAM123C MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.67

Table S912.  Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
FAM123C MUTATED 1 3 2
FAM123C WILD-TYPE 137 58 74
'FAM123C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.85

Table S913.  Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
FAM123C MUTATED 7 4 0
FAM123C WILD-TYPE 288 477 7
'FAM123C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.69

Table S914.  Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
FAM123C MUTATED 2 2 2 0
FAM123C WILD-TYPE 158 230 62 166
'FAM123C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S915.  Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
FAM123C MUTATED 3 1 3
FAM123C WILD-TYPE 192 185 186
'FAM123C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.95

Table S916.  Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
FAM123C MUTATED 4 3 0
FAM123C WILD-TYPE 200 216 147
'FAM123C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.67

Table S917.  Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
FAM123C MUTATED 5 3 0
FAM123C WILD-TYPE 222 232 192
'FAM123C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.64

Table S918.  Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
FAM123C MUTATED 5 2 1
FAM123C WILD-TYPE 191 188 267
'FAM123C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0689 (Fisher's exact test), Q value = 0.5

Table S919.  Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
FAM123C MUTATED 3 0 0 1
FAM123C WILD-TYPE 133 107 183 82
'FAM123C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.95

Table S920.  Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
FAM123C MUTATED 3 0 1
FAM123C WILD-TYPE 219 184 102
'FAM123C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S921.  Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
FAM123C MUTATED 3 1 0
FAM123C WILD-TYPE 181 161 159
'FAM123C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.75

Table S922.  Gene #79: 'FAM123C MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
FAM123C MUTATED 2 1 0 1
FAM123C WILD-TYPE 88 137 188 88
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S923.  Gene #80: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
KRAS MUTATED 2 2 0
KRAS WILD-TYPE 293 479 7
'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S924.  Gene #80: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
KRAS MUTATED 1 1 0 1
KRAS WILD-TYPE 159 231 64 165
'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S925.  Gene #80: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
KRAS MUTATED 1 1 1
KRAS WILD-TYPE 194 185 188
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S926.  Gene #80: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
KRAS MUTATED 2 0 1
KRAS WILD-TYPE 202 219 146
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S927.  Gene #80: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
KRAS MUTATED 1 1 1
KRAS WILD-TYPE 226 234 191
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S928.  Gene #80: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
KRAS MUTATED 1 0 2
KRAS WILD-TYPE 195 190 266
'OAS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S929.  Gene #81: 'OAS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
OAS2 MUTATED 1 0 1 1
OAS2 WILD-TYPE 68 43 73 53
'OAS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S930.  Gene #81: 'OAS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
OAS2 MUTATED 0 1 1 1
OAS2 WILD-TYPE 63 49 47 78
'OAS2 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S931.  Gene #81: 'OAS2 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
OAS2 MUTATED 0 2 0 1
OAS2 WILD-TYPE 77 91 45 59
'OAS2 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S932.  Gene #81: 'OAS2 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
OAS2 MUTATED 1 1 1
OAS2 WILD-TYPE 137 60 75
'OAS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.85

Table S933.  Gene #81: 'OAS2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
OAS2 MUTATED 3 1 0
OAS2 WILD-TYPE 292 480 7
'OAS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.95

Table S934.  Gene #81: 'OAS2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
OAS2 MUTATED 3 1 0
OAS2 WILD-TYPE 224 234 192
'OAS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.64

Table S935.  Gene #81: 'OAS2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
OAS2 MUTATED 3 1 0
OAS2 WILD-TYPE 193 189 268
'MAP3K1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S936.  Gene #82: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
MAP3K1 MUTATED 1 1 2 1
MAP3K1 WILD-TYPE 68 42 72 53
'MAP3K1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S937.  Gene #82: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
MAP3K1 MUTATED 1 1 2 1
MAP3K1 WILD-TYPE 62 49 46 78
'MAP3K1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S938.  Gene #82: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
MAP3K1 MUTATED 2 2 0 2
MAP3K1 WILD-TYPE 75 91 45 58
'MAP3K1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S939.  Gene #82: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
MAP3K1 MUTATED 2 2 2
MAP3K1 WILD-TYPE 136 59 74
'MAP3K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.8

Table S940.  Gene #82: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
MAP3K1 MUTATED 6 3 0
MAP3K1 WILD-TYPE 289 478 7
'MAP3K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S941.  Gene #82: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
MAP3K1 MUTATED 2 2 0 0
MAP3K1 WILD-TYPE 158 230 64 166
'MAP3K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S942.  Gene #82: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
MAP3K1 MUTATED 1 1 3
MAP3K1 WILD-TYPE 194 185 186
'MAP3K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S943.  Gene #82: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
MAP3K1 MUTATED 2 3 0
MAP3K1 WILD-TYPE 202 216 147
'MAP3K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.81

Table S944.  Gene #82: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
MAP3K1 MUTATED 5 1 1
MAP3K1 WILD-TYPE 222 234 191
'MAP3K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.95

Table S945.  Gene #82: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
MAP3K1 MUTATED 4 2 1
MAP3K1 WILD-TYPE 192 188 267
'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S946.  Gene #82: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
MAP3K1 MUTATED 0 2 1 0
MAP3K1 WILD-TYPE 136 105 182 83
'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0517 (Fisher's exact test), Q value = 0.43

Table S947.  Gene #82: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
MAP3K1 MUTATED 0 1 2
MAP3K1 WILD-TYPE 222 183 101
'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.86

Table S948.  Gene #82: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
MAP3K1 MUTATED 0 1 2
MAP3K1 WILD-TYPE 184 161 157
'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S949.  Gene #82: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
MAP3K1 MUTATED 0 1 2 0
MAP3K1 WILD-TYPE 90 137 186 89
'TRPV6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S950.  Gene #83: 'TRPV6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
TRPV6 MUTATED 0 2 2 2
TRPV6 WILD-TYPE 69 41 72 52
'TRPV6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.89

Table S951.  Gene #83: 'TRPV6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
TRPV6 MUTATED 0 3 1 2
TRPV6 WILD-TYPE 63 47 47 77
'TRPV6 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.85

Table S952.  Gene #83: 'TRPV6 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
TRPV6 MUTATED 0 4 2 1
TRPV6 WILD-TYPE 77 89 43 59
'TRPV6 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S953.  Gene #83: 'TRPV6 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
TRPV6 MUTATED 4 1 2
TRPV6 WILD-TYPE 134 60 74
'TRPV6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S954.  Gene #83: 'TRPV6 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TRPV6 MUTATED 6 6 0
TRPV6 WILD-TYPE 289 475 7
'TRPV6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S955.  Gene #83: 'TRPV6 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TRPV6 MUTATED 3 2 0 2
TRPV6 WILD-TYPE 157 230 64 164
'TRPV6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S956.  Gene #83: 'TRPV6 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TRPV6 MUTATED 3 4 1
TRPV6 WILD-TYPE 192 182 188
'TRPV6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S957.  Gene #83: 'TRPV6 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TRPV6 MUTATED 1 4 3
TRPV6 WILD-TYPE 203 215 144
'TRPV6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0769 (Fisher's exact test), Q value = 0.53

Table S958.  Gene #83: 'TRPV6 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TRPV6 MUTATED 7 1 3
TRPV6 WILD-TYPE 220 234 189
'TRPV6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S959.  Gene #83: 'TRPV6 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TRPV6 MUTATED 5 3 3
TRPV6 WILD-TYPE 191 187 265
'TRPV6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S960.  Gene #83: 'TRPV6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TRPV6 MUTATED 1 2 3 0
TRPV6 WILD-TYPE 135 105 180 83
'TRPV6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S961.  Gene #83: 'TRPV6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TRPV6 MUTATED 3 1 2
TRPV6 WILD-TYPE 219 183 101
'TRPV6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S962.  Gene #83: 'TRPV6 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TRPV6 MUTATED 2 1 3
TRPV6 WILD-TYPE 182 161 156
'TRPV6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S963.  Gene #83: 'TRPV6 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TRPV6 MUTATED 0 1 4 1
TRPV6 WILD-TYPE 90 137 184 88
'MAP3K12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S964.  Gene #84: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
MAP3K12 MUTATED 1 5 0
MAP3K12 WILD-TYPE 294 476 7
'MAP3K12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S965.  Gene #84: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
MAP3K12 MUTATED 1 1 0 3
MAP3K12 WILD-TYPE 159 231 64 163
'MAP3K12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S966.  Gene #84: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
MAP3K12 MUTATED 3 1 1
MAP3K12 WILD-TYPE 192 185 188
'MAP3K12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S967.  Gene #84: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
MAP3K12 MUTATED 2 2 1
MAP3K12 WILD-TYPE 202 217 146
'MAP3K12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S968.  Gene #84: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
MAP3K12 MUTATED 1 1 3
MAP3K12 WILD-TYPE 226 234 189
'MAP3K12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S969.  Gene #84: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
MAP3K12 MUTATED 0 2 3
MAP3K12 WILD-TYPE 196 188 265
'MAP3K12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S970.  Gene #84: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
MAP3K12 MUTATED 0 1 3 1
MAP3K12 WILD-TYPE 136 106 180 82
'MAP3K12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S971.  Gene #84: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
MAP3K12 MUTATED 1 3 1
MAP3K12 WILD-TYPE 221 181 102
'MAP3K12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.81

Table S972.  Gene #84: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
MAP3K12 MUTATED 0 2 3
MAP3K12 WILD-TYPE 184 160 156
'MAP3K12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S973.  Gene #84: 'MAP3K12 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
MAP3K12 MUTATED 0 2 3 0
MAP3K12 WILD-TYPE 90 136 185 89
'TLR7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.82

Table S974.  Gene #85: 'TLR7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
TLR7 MUTATED 0 2 1 0
TLR7 WILD-TYPE 69 41 73 54
'TLR7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S975.  Gene #85: 'TLR7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
TLR7 MUTATED 1 1 1 0
TLR7 WILD-TYPE 62 49 47 79
'TLR7 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S976.  Gene #85: 'TLR7 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
TLR7 MUTATED 1 2 1 0
TLR7 WILD-TYPE 76 91 44 60
'TLR7 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S977.  Gene #85: 'TLR7 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
TLR7 MUTATED 2 0 2
TLR7 WILD-TYPE 136 61 74
'TLR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S978.  Gene #85: 'TLR7 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TLR7 MUTATED 5 5 0
TLR7 WILD-TYPE 290 476 7
'TLR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.7

Table S979.  Gene #85: 'TLR7 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TLR7 MUTATED 6 3 0 1
TLR7 WILD-TYPE 154 229 64 165
'TLR7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S980.  Gene #85: 'TLR7 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TLR7 MUTATED 2 4 3
TLR7 WILD-TYPE 193 182 186
'TLR7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S981.  Gene #85: 'TLR7 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TLR7 MUTATED 4 2 3
TLR7 WILD-TYPE 200 217 144
'TLR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S982.  Gene #85: 'TLR7 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TLR7 MUTATED 4 2 2
TLR7 WILD-TYPE 223 233 190
'TLR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S983.  Gene #85: 'TLR7 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TLR7 MUTATED 3 3 2
TLR7 WILD-TYPE 193 187 266
'TLR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S984.  Gene #85: 'TLR7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TLR7 MUTATED 2 1 2 1
TLR7 WILD-TYPE 134 106 181 82
'TLR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S985.  Gene #85: 'TLR7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TLR7 MUTATED 2 2 2
TLR7 WILD-TYPE 220 182 101
'TLR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.97

Table S986.  Gene #85: 'TLR7 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TLR7 MUTATED 1 1 4
TLR7 WILD-TYPE 183 161 155
'TLR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S987.  Gene #85: 'TLR7 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TLR7 MUTATED 1 0 4 1
TLR7 WILD-TYPE 89 138 184 88
'TREML2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0887 (Fisher's exact test), Q value = 0.59

Table S988.  Gene #86: 'TREML2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
TREML2 MUTATED 0 1 0 2
TREML2 WILD-TYPE 69 42 74 52
'TREML2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S989.  Gene #86: 'TREML2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
TREML2 MUTATED 1 1 0 1
TREML2 WILD-TYPE 62 49 48 78
'TREML2 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S990.  Gene #86: 'TREML2 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
TREML2 MUTATED 0 2 1 1
TREML2 WILD-TYPE 77 91 44 59
'TREML2 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S991.  Gene #86: 'TREML2 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
TREML2 MUTATED 3 0 1
TREML2 WILD-TYPE 135 61 75
'TREML2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S992.  Gene #86: 'TREML2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TREML2 MUTATED 2 4 0
TREML2 WILD-TYPE 293 477 7
'TREML2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S993.  Gene #86: 'TREML2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TREML2 MUTATED 2 1 0 1
TREML2 WILD-TYPE 158 231 64 165
'TREML2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S994.  Gene #86: 'TREML2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TREML2 MUTATED 2 2 2
TREML2 WILD-TYPE 193 184 187
'TREML2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S995.  Gene #86: 'TREML2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TREML2 MUTATED 2 2 2
TREML2 WILD-TYPE 202 217 145
'TREML2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S996.  Gene #86: 'TREML2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TREML2 MUTATED 4 1 1
TREML2 WILD-TYPE 223 234 191
'TREML2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S997.  Gene #86: 'TREML2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TREML2 MUTATED 3 1 2
TREML2 WILD-TYPE 193 189 266
'TREML2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S998.  Gene #86: 'TREML2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TREML2 MUTATED 0 1 1 1
TREML2 WILD-TYPE 136 106 182 82
'TREML2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S999.  Gene #86: 'TREML2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TREML2 MUTATED 1 1 1
TREML2 WILD-TYPE 221 183 102
'TREML2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.85

Table S1000.  Gene #86: 'TREML2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TREML2 MUTATED 0 1 2
TREML2 WILD-TYPE 184 161 157
'TREML2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1001.  Gene #86: 'TREML2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TREML2 MUTATED 0 1 2 0
TREML2 WILD-TYPE 90 137 186 89
'MACC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S1002.  Gene #87: 'MACC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
MACC1 MUTATED 1 0 2 0
MACC1 WILD-TYPE 68 43 72 54
'MACC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.67

Table S1003.  Gene #87: 'MACC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
MACC1 MUTATED 1 0 2 0
MACC1 WILD-TYPE 62 50 46 79
'MACC1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.85

Table S1004.  Gene #87: 'MACC1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
MACC1 MUTATED 2 0 0 2
MACC1 WILD-TYPE 75 93 45 58
'MACC1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.95

Table S1005.  Gene #87: 'MACC1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
MACC1 MUTATED 2 2 0
MACC1 WILD-TYPE 136 59 76
'MACC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.88

Table S1006.  Gene #87: 'MACC1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
MACC1 MUTATED 5 3 0
MACC1 WILD-TYPE 290 478 7
'MACC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.75

Table S1007.  Gene #87: 'MACC1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
MACC1 MUTATED 4 2 0 0
MACC1 WILD-TYPE 156 230 64 166
'MACC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0893 (Fisher's exact test), Q value = 0.59

Table S1008.  Gene #87: 'MACC1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
MACC1 MUTATED 1 0 4
MACC1 WILD-TYPE 194 186 185
'MACC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.85

Table S1009.  Gene #87: 'MACC1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
MACC1 MUTATED 4 1 0
MACC1 WILD-TYPE 200 218 147
'MACC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.88

Table S1010.  Gene #87: 'MACC1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
MACC1 MUTATED 4 2 0
MACC1 WILD-TYPE 223 233 192
'MACC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0567 (Fisher's exact test), Q value = 0.45

Table S1011.  Gene #87: 'MACC1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
MACC1 MUTATED 3 3 0
MACC1 WILD-TYPE 193 187 268
'MACC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.85

Table S1012.  Gene #87: 'MACC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
MACC1 MUTATED 1 2 0 1
MACC1 WILD-TYPE 135 105 183 82
'MACC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.85

Table S1013.  Gene #87: 'MACC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
MACC1 MUTATED 2 0 2
MACC1 WILD-TYPE 220 184 101
'MACC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S1014.  Gene #87: 'MACC1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
MACC1 MUTATED 1 2 1
MACC1 WILD-TYPE 183 160 158
'MACC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S1015.  Gene #87: 'MACC1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
MACC1 MUTATED 0 2 1 1
MACC1 WILD-TYPE 90 136 187 88
'AOX1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S1016.  Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
AOX1 MUTATED 0 1 1 2
AOX1 WILD-TYPE 69 42 73 52
'AOX1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.95

Table S1017.  Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
AOX1 MUTATED 0 2 0 2
AOX1 WILD-TYPE 63 48 48 77
'AOX1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.67

Table S1018.  Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
AOX1 MUTATED 0 2 2 0
AOX1 WILD-TYPE 77 91 43 60
'AOX1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.85

Table S1019.  Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
AOX1 MUTATED 4 0 0
AOX1 WILD-TYPE 134 61 76
'AOX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.88

Table S1020.  Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
AOX1 MUTATED 5 3 0
AOX1 WILD-TYPE 290 478 7
'AOX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S1021.  Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
AOX1 MUTATED 2 2 0 0
AOX1 WILD-TYPE 158 230 64 166
'AOX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1022.  Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
AOX1 MUTATED 1 2 3
AOX1 WILD-TYPE 194 184 186
'AOX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S1023.  Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
AOX1 MUTATED 2 3 1
AOX1 WILD-TYPE 202 216 146
'AOX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0923 (Fisher's exact test), Q value = 0.59

Table S1024.  Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
AOX1 MUTATED 6 1 1
AOX1 WILD-TYPE 221 234 191
'AOX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.65

Table S1025.  Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
AOX1 MUTATED 5 2 1
AOX1 WILD-TYPE 191 188 267
'AOX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 0.41

Table S1026.  Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
AOX1 MUTATED 1 3 0 0
AOX1 WILD-TYPE 135 104 183 83

Figure S210.  Get High-res Image Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'AOX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0281 (Fisher's exact test), Q value = 0.3

Table S1027.  Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
AOX1 MUTATED 1 0 3
AOX1 WILD-TYPE 221 184 100

Figure S211.  Get High-res Image Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'AOX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.95

Table S1028.  Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
AOX1 MUTATED 3 0 1
AOX1 WILD-TYPE 181 162 158
'AOX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1029.  Gene #88: 'AOX1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
AOX1 MUTATED 0 1 2 1
AOX1 WILD-TYPE 90 137 186 88
'HEATR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S1030.  Gene #89: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
HEATR3 MUTATED 2 2 0
HEATR3 WILD-TYPE 293 479 7
'HEATR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.97

Table S1031.  Gene #89: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
HEATR3 MUTATED 2 0 0 1
HEATR3 WILD-TYPE 158 232 64 165
'HEATR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1032.  Gene #89: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
HEATR3 MUTATED 2 0 1
HEATR3 WILD-TYPE 193 186 188
'HEATR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S1033.  Gene #89: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
HEATR3 MUTATED 2 1 0
HEATR3 WILD-TYPE 202 218 147
'HEATR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1034.  Gene #89: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
HEATR3 MUTATED 2 1 0
HEATR3 WILD-TYPE 225 234 192
'HEATR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1035.  Gene #89: 'HEATR3 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
HEATR3 MUTATED 1 1 1
HEATR3 WILD-TYPE 195 189 267
'KRT13 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1036.  Gene #90: 'KRT13 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
KRT13 MUTATED 1 0 2 0
KRT13 WILD-TYPE 68 43 72 54
'KRT13 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.67

Table S1037.  Gene #90: 'KRT13 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
KRT13 MUTATED 1 0 2 0
KRT13 WILD-TYPE 62 50 46 79
'KRT13 MUTATION STATUS' versus 'MIR_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1038.  Gene #90: 'KRT13 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
KRT13 MUTATED 1 1 0 1
KRT13 WILD-TYPE 76 92 45 59
'KRT13 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.072 (Fisher's exact test), Q value = 0.51

Table S1039.  Gene #90: 'KRT13 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
KRT13 MUTATED 0 2 1
KRT13 WILD-TYPE 138 59 75
'KRT13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.94

Table S1040.  Gene #90: 'KRT13 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
KRT13 MUTATED 4 2 0
KRT13 WILD-TYPE 291 479 7
'KRT13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1041.  Gene #90: 'KRT13 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
KRT13 MUTATED 2 2 0 0
KRT13 WILD-TYPE 158 230 64 166
'KRT13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.79

Table S1042.  Gene #90: 'KRT13 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
KRT13 MUTATED 3 0 1
KRT13 WILD-TYPE 224 235 191
'KRT13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1043.  Gene #90: 'KRT13 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
KRT13 MUTATED 2 1 1
KRT13 WILD-TYPE 194 189 267
'KRT13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S1044.  Gene #90: 'KRT13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
KRT13 MUTATED 0 2 1 0
KRT13 WILD-TYPE 136 105 182 83
'KRT13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0523 (Fisher's exact test), Q value = 0.43

Table S1045.  Gene #90: 'KRT13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
KRT13 MUTATED 0 1 2
KRT13 WILD-TYPE 222 183 101
'KRT13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1046.  Gene #90: 'KRT13 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
KRT13 MUTATED 1 1 1
KRT13 WILD-TYPE 183 161 158
'KRT13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.78

Table S1047.  Gene #90: 'KRT13 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
KRT13 MUTATED 0 0 1 2
KRT13 WILD-TYPE 90 138 187 87
'CNOT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.99

Table S1048.  Gene #91: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
CNOT1 MUTATED 1 7 0
CNOT1 WILD-TYPE 294 474 7
'CNOT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1049.  Gene #91: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
CNOT1 MUTATED 1 4 0 2
CNOT1 WILD-TYPE 159 228 64 164
'CNOT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1050.  Gene #91: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
CNOT1 MUTATED 3 2 2
CNOT1 WILD-TYPE 192 184 187
'CNOT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1051.  Gene #91: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
CNOT1 MUTATED 2 3 2
CNOT1 WILD-TYPE 202 216 145
'CNOT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S1052.  Gene #91: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
CNOT1 MUTATED 3 2 3
CNOT1 WILD-TYPE 224 233 189
'CNOT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.42

Table S1053.  Gene #91: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
CNOT1 MUTATED 0 5 3
CNOT1 WILD-TYPE 196 185 265

Figure S212.  Get High-res Image Gene #91: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'CNOT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S1054.  Gene #91: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
CNOT1 MUTATED 2 2 3 0
CNOT1 WILD-TYPE 134 105 180 83
'CNOT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S1055.  Gene #91: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
CNOT1 MUTATED 2 3 2
CNOT1 WILD-TYPE 220 181 101
'CNOT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S1056.  Gene #91: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
CNOT1 MUTATED 2 2 3
CNOT1 WILD-TYPE 182 160 156
'CNOT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S1057.  Gene #91: 'CNOT1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
CNOT1 MUTATED 1 3 3 0
CNOT1 WILD-TYPE 89 135 185 89
'ESR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S1058.  Gene #92: 'ESR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
ESR2 MUTATED 0 0 2 1
ESR2 WILD-TYPE 69 43 72 53
'ESR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S1059.  Gene #92: 'ESR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
ESR2 MUTATED 0 1 1 1
ESR2 WILD-TYPE 63 49 47 78
'ESR2 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1060.  Gene #92: 'ESR2 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
ESR2 MUTATED 1 1 1 0
ESR2 WILD-TYPE 76 92 44 60
'ESR2 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S1061.  Gene #92: 'ESR2 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
ESR2 MUTATED 3 0 0
ESR2 WILD-TYPE 135 61 76
'ESR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1062.  Gene #92: 'ESR2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ESR2 MUTATED 2 3 0
ESR2 WILD-TYPE 293 478 7
'ESR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S1063.  Gene #92: 'ESR2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ESR2 MUTATED 2 1 0 1
ESR2 WILD-TYPE 158 231 64 165
'ESR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1064.  Gene #92: 'ESR2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ESR2 MUTATED 2 1 2
ESR2 WILD-TYPE 193 185 187
'ESR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S1065.  Gene #92: 'ESR2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ESR2 MUTATED 1 3 1
ESR2 WILD-TYPE 203 216 146
'ESR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S1066.  Gene #92: 'ESR2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ESR2 MUTATED 2 2 0
ESR2 WILD-TYPE 225 233 192
'ESR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1067.  Gene #92: 'ESR2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ESR2 MUTATED 1 2 1
ESR2 WILD-TYPE 195 188 267
'ESR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.85

Table S1068.  Gene #92: 'ESR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ESR2 MUTATED 1 2 0 0
ESR2 WILD-TYPE 135 105 183 83
'ESR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S1069.  Gene #92: 'ESR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ESR2 MUTATED 2 0 1
ESR2 WILD-TYPE 220 184 102
'ESR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1070.  Gene #92: 'ESR2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ESR2 MUTATED 1 1 1
ESR2 WILD-TYPE 183 161 158
'ESR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1071.  Gene #92: 'ESR2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ESR2 MUTATED 0 1 2 0
ESR2 WILD-TYPE 90 137 186 89
'GRHL3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S1072.  Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
GRHL3 MUTATED 1 0 2 1
GRHL3 WILD-TYPE 68 43 72 53
'GRHL3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1073.  Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
GRHL3 MUTATED 1 1 1 1
GRHL3 WILD-TYPE 62 49 47 78
'GRHL3 MUTATION STATUS' versus 'MIR_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1074.  Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
GRHL3 MUTATED 1 2 0 1
GRHL3 WILD-TYPE 76 91 45 59
'GRHL3 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S1075.  Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
GRHL3 MUTATED 1 1 2
GRHL3 WILD-TYPE 137 60 74
'GRHL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.81

Table S1076.  Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
GRHL3 MUTATED 5 2 0
GRHL3 WILD-TYPE 290 479 7
'GRHL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 0.55

Table S1077.  Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
GRHL3 MUTATED 4 1 1 0
GRHL3 WILD-TYPE 156 231 63 166
'GRHL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S1078.  Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
GRHL3 MUTATED 1 2 2
GRHL3 WILD-TYPE 194 184 187
'GRHL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1079.  Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
GRHL3 MUTATED 2 1 2
GRHL3 WILD-TYPE 202 218 145
'GRHL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.26

Table S1080.  Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
GRHL3 MUTATED 5 0 1
GRHL3 WILD-TYPE 222 235 191

Figure S213.  Get High-res Image Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'GRHL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1081.  Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
GRHL3 MUTATED 3 2 1
GRHL3 WILD-TYPE 193 188 267
'GRHL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S1082.  Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
GRHL3 MUTATED 1 2 1 0
GRHL3 WILD-TYPE 135 105 182 83
'GRHL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.19

Table S1083.  Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
GRHL3 MUTATED 0 1 3
GRHL3 WILD-TYPE 222 183 100

Figure S214.  Get High-res Image Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'GRHL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.8

Table S1084.  Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
GRHL3 MUTATED 1 0 3
GRHL3 WILD-TYPE 183 162 156
'GRHL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.91

Table S1085.  Gene #93: 'GRHL3 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
GRHL3 MUTATED 0 0 2 2
GRHL3 WILD-TYPE 90 138 186 87
'RASGRF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S1086.  Gene #94: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
RASGRF2 MUTATED 3 3 0
RASGRF2 WILD-TYPE 292 478 7
'RASGRF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.86

Table S1087.  Gene #94: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
RASGRF2 MUTATED 4 1 0 1
RASGRF2 WILD-TYPE 156 231 64 165
'RASGRF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1088.  Gene #94: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
RASGRF2 MUTATED 2 1 1
RASGRF2 WILD-TYPE 193 185 188
'RASGRF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1089.  Gene #94: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
RASGRF2 MUTATED 1 2 1
RASGRF2 WILD-TYPE 203 217 146
'RASGRF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S1090.  Gene #94: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
RASGRF2 MUTATED 4 1 1
RASGRF2 WILD-TYPE 223 234 191
'RASGRF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S1091.  Gene #94: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
RASGRF2 MUTATED 3 1 2
RASGRF2 WILD-TYPE 193 189 266
'RASGRF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0808 (Fisher's exact test), Q value = 0.56

Table S1092.  Gene #94: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
RASGRF2 MUTATED 0 3 1 0
RASGRF2 WILD-TYPE 136 104 182 83
'RASGRF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.19

Table S1093.  Gene #94: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
RASGRF2 MUTATED 0 1 3
RASGRF2 WILD-TYPE 222 183 100

Figure S215.  Get High-res Image Gene #94: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'RASGRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1094.  Gene #94: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
RASGRF2 MUTATED 1 2 1
RASGRF2 WILD-TYPE 183 160 158
'RASGRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S1095.  Gene #94: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
RASGRF2 MUTATED 0 2 1 1
RASGRF2 WILD-TYPE 90 136 187 88
'PAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1096.  Gene #95: 'PAK1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PAK1 MUTATED 1 2 0
PAK1 WILD-TYPE 294 479 7
'PAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S1097.  Gene #95: 'PAK1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
PAK1 MUTATED 2 1 0 0
PAK1 WILD-TYPE 158 231 64 166
'PAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1098.  Gene #95: 'PAK1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
PAK1 MUTATED 2 0 1
PAK1 WILD-TYPE 193 186 188
'PAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S1099.  Gene #95: 'PAK1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
PAK1 MUTATED 2 1 0
PAK1 WILD-TYPE 202 218 147
'SLC35A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1100.  Gene #96: 'SLC35A2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
SLC35A2 MUTATED 1 2 0
SLC35A2 WILD-TYPE 294 479 7
'SLC35A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1101.  Gene #96: 'SLC35A2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
SLC35A2 MUTATED 1 1 1
SLC35A2 WILD-TYPE 226 234 191
'SLC35A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1102.  Gene #96: 'SLC35A2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
SLC35A2 MUTATED 1 1 1
SLC35A2 WILD-TYPE 195 189 267
'LGALS13 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1103.  Gene #97: 'LGALS13 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
LGALS13 MUTATED 1 3 0
LGALS13 WILD-TYPE 294 478 7
'LGALS13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.23

Table S1104.  Gene #97: 'LGALS13 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
LGALS13 MUTATED 0 0 2 1
LGALS13 WILD-TYPE 160 232 62 165

Figure S216.  Get High-res Image Gene #97: 'LGALS13 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'LGALS13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1105.  Gene #97: 'LGALS13 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
LGALS13 MUTATED 1 1 1
LGALS13 WILD-TYPE 226 234 191
'LGALS13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1106.  Gene #97: 'LGALS13 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
LGALS13 MUTATED 1 0 2
LGALS13 WILD-TYPE 195 190 266
'LGALS13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0486 (Fisher's exact test), Q value = 0.42

Table S1107.  Gene #97: 'LGALS13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
LGALS13 MUTATED 3 0 0 0
LGALS13 WILD-TYPE 133 107 183 83

Figure S217.  Get High-res Image Gene #97: 'LGALS13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'LGALS13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.98

Table S1108.  Gene #97: 'LGALS13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
LGALS13 MUTATED 3 0 0
LGALS13 WILD-TYPE 219 184 103
'LGALS13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.65

Table S1109.  Gene #97: 'LGALS13 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
LGALS13 MUTATED 3 0 0
LGALS13 WILD-TYPE 181 162 159
'LGALS13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.88

Table S1110.  Gene #97: 'LGALS13 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
LGALS13 MUTATED 0 2 0 1
LGALS13 WILD-TYPE 90 136 188 88
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1111.  Gene #98: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
CDKN2A MUTATED 2 4 0
CDKN2A WILD-TYPE 293 477 7
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1112.  Gene #98: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
CDKN2A MUTATED 1 2 0 1
CDKN2A WILD-TYPE 159 230 64 165
'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1113.  Gene #98: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
CDKN2A MUTATED 2 0 2
CDKN2A WILD-TYPE 193 186 187
'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1114.  Gene #98: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
CDKN2A MUTATED 2 2 0
CDKN2A WILD-TYPE 202 217 147
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.97

Table S1115.  Gene #98: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
CDKN2A MUTATED 3 3 0
CDKN2A WILD-TYPE 224 232 192
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1116.  Gene #98: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
CDKN2A MUTATED 2 3 1
CDKN2A WILD-TYPE 194 187 267
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.26

Table S1117.  Gene #98: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
CDKN2A MUTATED 0 3 0 1
CDKN2A WILD-TYPE 136 104 183 82

Figure S218.  Get High-res Image Gene #98: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.95

Table S1118.  Gene #98: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
CDKN2A MUTATED 3 0 1
CDKN2A WILD-TYPE 219 184 102
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.67

Table S1119.  Gene #98: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
CDKN2A MUTATED 0 3 1
CDKN2A WILD-TYPE 184 159 158
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1120.  Gene #98: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
CDKN2A MUTATED 0 2 2 0
CDKN2A WILD-TYPE 90 136 186 89
'DOCK5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.95

Table S1121.  Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
DOCK5 MUTATED 4 3 1 1
DOCK5 WILD-TYPE 65 40 73 53
'DOCK5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S1122.  Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
DOCK5 MUTATED 2 2 1 4
DOCK5 WILD-TYPE 61 48 47 75
'DOCK5 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.46

Table S1123.  Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
DOCK5 MUTATED 6 1 0 3
DOCK5 WILD-TYPE 71 92 45 57
'DOCK5 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.97

Table S1124.  Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
DOCK5 MUTATED 3 4 3
DOCK5 WILD-TYPE 135 57 73
'DOCK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.28

Table S1125.  Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
DOCK5 MUTATED 13 6 0
DOCK5 WILD-TYPE 282 475 7

Figure S219.  Get High-res Image Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'DOCK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.35

Table S1126.  Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
DOCK5 MUTATED 8 4 0 1
DOCK5 WILD-TYPE 152 228 64 165

Figure S220.  Get High-res Image Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'DOCK5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.29

Table S1127.  Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
DOCK5 MUTATED 4 1 9
DOCK5 WILD-TYPE 191 185 180

Figure S221.  Get High-res Image Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

'DOCK5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.81

Table S1128.  Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
DOCK5 MUTATED 8 5 1
DOCK5 WILD-TYPE 196 214 146
'DOCK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.18

Table S1129.  Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
DOCK5 MUTATED 12 3 2
DOCK5 WILD-TYPE 215 232 190

Figure S222.  Get High-res Image Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'DOCK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00543 (Fisher's exact test), Q value = 0.1

Table S1130.  Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
DOCK5 MUTATED 11 4 2
DOCK5 WILD-TYPE 185 186 266

Figure S223.  Get High-res Image Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'DOCK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.37

Table S1131.  Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
DOCK5 MUTATED 2 6 2 0
DOCK5 WILD-TYPE 134 101 181 83

Figure S224.  Get High-res Image Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'DOCK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0663 (Fisher's exact test), Q value = 0.49

Table S1132.  Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
DOCK5 MUTATED 2 3 5
DOCK5 WILD-TYPE 220 181 98
'DOCK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S1133.  Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
DOCK5 MUTATED 4 2 4
DOCK5 WILD-TYPE 180 160 155
'DOCK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S1134.  Gene #99: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
DOCK5 MUTATED 1 1 5 3
DOCK5 WILD-TYPE 89 137 183 86
'TYRP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1135.  Gene #100: 'TYRP1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TYRP1 MUTATED 2 4 0
TYRP1 WILD-TYPE 293 477 7
'TYRP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S1136.  Gene #100: 'TYRP1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TYRP1 MUTATED 2 2 0 1
TYRP1 WILD-TYPE 158 230 64 165
'TYRP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1137.  Gene #100: 'TYRP1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TYRP1 MUTATED 1 1 1
TYRP1 WILD-TYPE 194 185 188
'TYRP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S1138.  Gene #100: 'TYRP1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TYRP1 MUTATED 2 0 1
TYRP1 WILD-TYPE 202 219 146
'TYRP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1139.  Gene #100: 'TYRP1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TYRP1 MUTATED 3 2 1
TYRP1 WILD-TYPE 224 233 191
'TYRP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S1140.  Gene #100: 'TYRP1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TYRP1 MUTATED 2 3 1
TYRP1 WILD-TYPE 194 187 267
'TYRP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1141.  Gene #100: 'TYRP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TYRP1 MUTATED 0 2 2 0
TYRP1 WILD-TYPE 136 105 181 83
'TYRP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S1142.  Gene #100: 'TYRP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TYRP1 MUTATED 1 1 2
TYRP1 WILD-TYPE 221 183 101
'TYRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S1143.  Gene #100: 'TYRP1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TYRP1 MUTATED 1 1 2
TYRP1 WILD-TYPE 183 161 157
'TYRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S1144.  Gene #100: 'TYRP1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TYRP1 MUTATED 0 0 3 1
TYRP1 WILD-TYPE 90 138 185 88
'CD99L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S1145.  Gene #101: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
CD99L2 MUTATED 1 4 0
CD99L2 WILD-TYPE 294 477 7
'CD99L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.85

Table S1146.  Gene #101: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
CD99L2 MUTATED 1 0 1 2
CD99L2 WILD-TYPE 159 232 63 164
'CD99L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1147.  Gene #101: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
CD99L2 MUTATED 2 1 1
CD99L2 WILD-TYPE 193 185 188
'CD99L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S1148.  Gene #101: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
CD99L2 MUTATED 2 1 1
CD99L2 WILD-TYPE 202 218 146
'CD99L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1149.  Gene #101: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
CD99L2 MUTATED 2 2 1
CD99L2 WILD-TYPE 225 233 191
'CD99L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1150.  Gene #101: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
CD99L2 MUTATED 1 1 3
CD99L2 WILD-TYPE 195 189 265
'CD99L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.88

Table S1151.  Gene #101: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
CD99L2 MUTATED 0 1 1 2
CD99L2 WILD-TYPE 136 106 182 81
'CD99L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1152.  Gene #101: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
CD99L2 MUTATED 2 1 1
CD99L2 WILD-TYPE 220 183 102
'CD99L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S1153.  Gene #101: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
CD99L2 MUTATED 1 1 2
CD99L2 WILD-TYPE 183 161 157
'CD99L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S1154.  Gene #101: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
CD99L2 MUTATED 0 1 3 0
CD99L2 WILD-TYPE 90 137 185 89
'MORN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S1155.  Gene #102: 'MORN5 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
MORN5 MUTATED 2 1 0
MORN5 WILD-TYPE 293 480 7
'MORN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.88

Table S1156.  Gene #102: 'MORN5 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
MORN5 MUTATED 0 2 1
MORN5 WILD-TYPE 195 184 188
'MORN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S1157.  Gene #102: 'MORN5 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
MORN5 MUTATED 0 2 1
MORN5 WILD-TYPE 204 217 146
'SMARCA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00202 (Fisher's exact test), Q value = 0.047

Table S1158.  Gene #103: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
SMARCA4 MUTATED 2 25 0
SMARCA4 WILD-TYPE 293 456 7

Figure S225.  Get High-res Image Gene #103: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'SMARCA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.22

Table S1159.  Gene #103: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
SMARCA4 MUTATED 3 17 0 7
SMARCA4 WILD-TYPE 157 215 64 159

Figure S226.  Get High-res Image Gene #103: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'SMARCA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.95

Table S1160.  Gene #103: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
SMARCA4 MUTATED 10 5 4
SMARCA4 WILD-TYPE 185 181 185
'SMARCA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S1161.  Gene #103: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
SMARCA4 MUTATED 8 6 5
SMARCA4 WILD-TYPE 196 213 142
'SMARCA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00576 (Fisher's exact test), Q value = 0.11

Table S1162.  Gene #103: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
SMARCA4 MUTATED 3 17 7
SMARCA4 WILD-TYPE 224 218 185

Figure S227.  Get High-res Image Gene #103: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'SMARCA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00973 (Fisher's exact test), Q value = 0.15

Table S1163.  Gene #103: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
SMARCA4 MUTATED 2 13 12
SMARCA4 WILD-TYPE 194 177 256

Figure S228.  Get High-res Image Gene #103: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.98

Table S1164.  Gene #103: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
SMARCA4 MUTATED 8 2 9 6
SMARCA4 WILD-TYPE 128 105 174 77
'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.93

Table S1165.  Gene #103: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
SMARCA4 MUTATED 14 9 2
SMARCA4 WILD-TYPE 208 175 101
'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S1166.  Gene #103: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
SMARCA4 MUTATED 8 9 8
SMARCA4 WILD-TYPE 176 153 151
'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.81

Table S1167.  Gene #103: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
SMARCA4 MUTATED 7 6 11 1
SMARCA4 WILD-TYPE 83 132 177 88
'NAP1L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1168.  Gene #104: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
NAP1L2 MUTATED 2 4 0
NAP1L2 WILD-TYPE 293 477 7
'NAP1L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S1169.  Gene #104: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
NAP1L2 MUTATED 0 2 0 2
NAP1L2 WILD-TYPE 160 230 64 164
'NAP1L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S1170.  Gene #104: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
NAP1L2 MUTATED 1 2 1
NAP1L2 WILD-TYPE 194 184 188
'NAP1L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.93

Table S1171.  Gene #104: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
NAP1L2 MUTATED 0 3 1
NAP1L2 WILD-TYPE 204 216 146
'NAP1L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1172.  Gene #104: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
NAP1L2 MUTATED 1 2 2
NAP1L2 WILD-TYPE 226 233 190
'NAP1L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1173.  Gene #104: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
NAP1L2 MUTATED 1 2 2
NAP1L2 WILD-TYPE 195 188 266
'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1174.  Gene #104: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
NAP1L2 MUTATED 1 1 2 0
NAP1L2 WILD-TYPE 135 106 181 83
'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S1175.  Gene #104: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
NAP1L2 MUTATED 2 2 0
NAP1L2 WILD-TYPE 220 182 103
'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1176.  Gene #104: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
NAP1L2 MUTATED 2 1 1
NAP1L2 WILD-TYPE 182 161 158
'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1177.  Gene #104: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
NAP1L2 MUTATED 1 1 2 0
NAP1L2 WILD-TYPE 89 137 186 89
'CD44 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S1178.  Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
CD44 MUTATED 2 0 1 0
CD44 WILD-TYPE 67 43 73 54
'CD44 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.95

Table S1179.  Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
CD44 MUTATED 2 0 1 0
CD44 WILD-TYPE 61 50 47 79
'CD44 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.97

Table S1180.  Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
CD44 MUTATED 0 1 0 2
CD44 WILD-TYPE 77 92 45 58
'CD44 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S1181.  Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
CD44 MUTATED 1 1 1
CD44 WILD-TYPE 137 60 75
'CD44 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S1182.  Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
CD44 MUTATED 3 3 0
CD44 WILD-TYPE 292 478 7
'CD44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1183.  Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
CD44 MUTATED 1 1 0 1
CD44 WILD-TYPE 159 231 64 165
'CD44 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.36

Table S1184.  Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
CD44 MUTATED 4 0 0
CD44 WILD-TYPE 191 186 189

Figure S229.  Get High-res Image Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

'CD44 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1185.  Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
CD44 MUTATED 2 2 0
CD44 WILD-TYPE 202 217 147
'CD44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.85

Table S1186.  Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
CD44 MUTATED 1 0 2
CD44 WILD-TYPE 226 235 190
'CD44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S1187.  Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
CD44 MUTATED 0 1 2
CD44 WILD-TYPE 196 189 266
'CD44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1188.  Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
CD44 MUTATED 0 1 2 0
CD44 WILD-TYPE 136 106 181 83
'CD44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.9

Table S1189.  Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
CD44 MUTATED 0 2 1
CD44 WILD-TYPE 222 182 102
'CD44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.86

Table S1190.  Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
CD44 MUTATED 0 1 2
CD44 WILD-TYPE 184 161 157
'CD44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1191.  Gene #105: 'CD44 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
CD44 MUTATED 0 1 2 0
CD44 WILD-TYPE 90 137 186 89
'OR52M1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S1192.  Gene #106: 'OR52M1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
OR52M1 MUTATED 2 1 0 1
OR52M1 WILD-TYPE 67 42 74 53
'OR52M1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S1193.  Gene #106: 'OR52M1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
OR52M1 MUTATED 1 2 0 1
OR52M1 WILD-TYPE 62 48 48 78
'OR52M1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.0886 (Fisher's exact test), Q value = 0.59

Table S1194.  Gene #106: 'OR52M1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
OR52M1 MUTATED 0 1 0 3
OR52M1 WILD-TYPE 77 92 45 57
'OR52M1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.0605 (Fisher's exact test), Q value = 0.46

Table S1195.  Gene #106: 'OR52M1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
OR52M1 MUTATED 1 3 0
OR52M1 WILD-TYPE 137 58 76
'OR52M1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.88

Table S1196.  Gene #106: 'OR52M1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
OR52M1 MUTATED 5 3 0
OR52M1 WILD-TYPE 290 478 7
'OR52M1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S1197.  Gene #106: 'OR52M1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
OR52M1 MUTATED 2 2 1 0
OR52M1 WILD-TYPE 158 230 63 166
'OR52M1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S1198.  Gene #106: 'OR52M1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
OR52M1 MUTATED 2 1 3
OR52M1 WILD-TYPE 193 185 186
'OR52M1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S1199.  Gene #106: 'OR52M1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
OR52M1 MUTATED 3 2 1
OR52M1 WILD-TYPE 201 217 146
'OR52M1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1200.  Gene #106: 'OR52M1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
OR52M1 MUTATED 4 2 1
OR52M1 WILD-TYPE 223 233 191
'OR52M1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.95

Table S1201.  Gene #106: 'OR52M1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
OR52M1 MUTATED 4 2 1
OR52M1 WILD-TYPE 192 188 267
'OR52M1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1202.  Gene #106: 'OR52M1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
OR52M1 MUTATED 2 1 1 0
OR52M1 WILD-TYPE 134 106 182 83
'OR52M1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1203.  Gene #106: 'OR52M1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
OR52M1 MUTATED 2 1 1
OR52M1 WILD-TYPE 220 183 102
'OR52M1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1204.  Gene #106: 'OR52M1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
OR52M1 MUTATED 2 1 1
OR52M1 WILD-TYPE 182 161 158
'OR52M1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1205.  Gene #106: 'OR52M1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
OR52M1 MUTATED 1 1 1 1
OR52M1 WILD-TYPE 89 137 187 88
'ROBO3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.85

Table S1206.  Gene #107: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ROBO3 MUTATED 0 5 0
ROBO3 WILD-TYPE 295 476 7
'ROBO3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S1207.  Gene #107: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ROBO3 MUTATED 0 3 0 2
ROBO3 WILD-TYPE 160 229 64 164
'ROBO3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.95

Table S1208.  Gene #107: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ROBO3 MUTATED 3 1 0
ROBO3 WILD-TYPE 192 185 189
'ROBO3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1209.  Gene #107: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ROBO3 MUTATED 1 3 0
ROBO3 WILD-TYPE 203 216 147
'ROBO3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.95

Table S1210.  Gene #107: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ROBO3 MUTATED 0 3 2
ROBO3 WILD-TYPE 227 232 190
'ROBO3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S1211.  Gene #107: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ROBO3 MUTATED 0 2 3
ROBO3 WILD-TYPE 196 188 265
'ROBO3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1212.  Gene #107: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ROBO3 MUTATED 1 0 2 2
ROBO3 WILD-TYPE 135 107 181 81
'ROBO3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.97

Table S1213.  Gene #107: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ROBO3 MUTATED 4 1 0
ROBO3 WILD-TYPE 218 183 103
'ROBO3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1214.  Gene #107: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ROBO3 MUTATED 2 2 1
ROBO3 WILD-TYPE 182 160 158
'ROBO3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S1215.  Gene #107: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ROBO3 MUTATED 1 2 2 0
ROBO3 WILD-TYPE 89 136 186 89
'MYO5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1216.  Gene #108: 'MYO5A MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
MYO5A MUTATED 3 2 0
MYO5A WILD-TYPE 292 479 7
'MYO5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.35

Table S1217.  Gene #108: 'MYO5A MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
MYO5A MUTATED 4 0 0 1
MYO5A WILD-TYPE 156 232 64 165

Figure S230.  Get High-res Image Gene #108: 'MYO5A MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'MYO5A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1218.  Gene #108: 'MYO5A MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
MYO5A MUTATED 3 0 2
MYO5A WILD-TYPE 192 186 187
'MYO5A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.85

Table S1219.  Gene #108: 'MYO5A MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
MYO5A MUTATED 4 1 0
MYO5A WILD-TYPE 200 218 147
'MYO5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.79

Table S1220.  Gene #108: 'MYO5A MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
MYO5A MUTATED 3 0 1
MYO5A WILD-TYPE 224 235 191
'MYO5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1221.  Gene #108: 'MYO5A MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
MYO5A MUTATED 2 1 1
MYO5A WILD-TYPE 194 189 267
'MYO5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1222.  Gene #108: 'MYO5A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
MYO5A MUTATED 2 1 1 0
MYO5A WILD-TYPE 134 106 182 83
'MYO5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1223.  Gene #108: 'MYO5A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
MYO5A MUTATED 1 1 2
MYO5A WILD-TYPE 221 183 101
'MYO5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1224.  Gene #108: 'MYO5A MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
MYO5A MUTATED 2 0 2
MYO5A WILD-TYPE 182 162 157
'MYO5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S1225.  Gene #108: 'MYO5A MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
MYO5A MUTATED 1 0 2 1
MYO5A WILD-TYPE 89 138 186 88
'KRT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1226.  Gene #109: 'KRT3 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
KRT3 MUTATED 1 3 0
KRT3 WILD-TYPE 294 478 7
'KRT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1227.  Gene #109: 'KRT3 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
KRT3 MUTATED 1 2 0 1
KRT3 WILD-TYPE 159 230 64 165
'KRT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1228.  Gene #109: 'KRT3 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
KRT3 MUTATED 2 0 1
KRT3 WILD-TYPE 193 186 188
'KRT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S1229.  Gene #109: 'KRT3 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
KRT3 MUTATED 2 1 0
KRT3 WILD-TYPE 202 218 147
'KRT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1230.  Gene #109: 'KRT3 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
KRT3 MUTATED 1 3 0
KRT3 WILD-TYPE 226 232 192
'KRT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S1231.  Gene #109: 'KRT3 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
KRT3 MUTATED 1 2 1
KRT3 WILD-TYPE 195 188 267
'KRT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.95

Table S1232.  Gene #109: 'KRT3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
KRT3 MUTATED 2 1 0 1
KRT3 WILD-TYPE 134 106 183 82
'KRT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.85

Table S1233.  Gene #109: 'KRT3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
KRT3 MUTATED 2 0 2
KRT3 WILD-TYPE 220 184 101
'KRT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1234.  Gene #109: 'KRT3 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
KRT3 MUTATED 3 1 0
KRT3 WILD-TYPE 181 161 159
'KRT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.87

Table S1235.  Gene #109: 'KRT3 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
KRT3 MUTATED 2 0 1 1
KRT3 WILD-TYPE 88 138 187 88
'GEFT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.85

Table S1236.  Gene #110: 'GEFT MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
GEFT MUTATED 3 1 0
GEFT WILD-TYPE 292 480 7
'GEFT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.41

Table S1237.  Gene #110: 'GEFT MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
GEFT MUTATED 3 0 0 0
GEFT WILD-TYPE 157 232 64 166

Figure S231.  Get High-res Image Gene #110: 'GEFT MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'GEFT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.26

Table S1238.  Gene #110: 'GEFT MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
GEFT MUTATED 4 0 0
GEFT WILD-TYPE 223 235 192

Figure S232.  Get High-res Image Gene #110: 'GEFT MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'GEFT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.63

Table S1239.  Gene #110: 'GEFT MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
GEFT MUTATED 3 1 0
GEFT WILD-TYPE 193 189 268
'GEFT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.85

Table S1240.  Gene #110: 'GEFT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
GEFT MUTATED 1 2 0 0
GEFT WILD-TYPE 135 105 183 83
'GEFT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.78

Table S1241.  Gene #110: 'GEFT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
GEFT MUTATED 1 0 2
GEFT WILD-TYPE 221 184 101
'GEFT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1242.  Gene #110: 'GEFT MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
GEFT MUTATED 2 0 1
GEFT WILD-TYPE 182 162 158
'GEFT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S1243.  Gene #110: 'GEFT MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
GEFT MUTATED 1 0 1 1
GEFT WILD-TYPE 89 138 187 88
'POM121 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1244.  Gene #111: 'POM121 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
POM121 MUTATED 1 5 0
POM121 WILD-TYPE 294 476 7
'POM121 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.98

Table S1245.  Gene #111: 'POM121 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
POM121 MUTATED 2 1 1 0
POM121 WILD-TYPE 158 231 63 166
'POM121 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.95

Table S1246.  Gene #111: 'POM121 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
POM121 MUTATED 3 1 0
POM121 WILD-TYPE 192 185 189
'POM121 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.74

Table S1247.  Gene #111: 'POM121 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
POM121 MUTATED 3 0 1
POM121 WILD-TYPE 201 219 146
'POM121 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S1248.  Gene #111: 'POM121 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
POM121 MUTATED 3 1 1
POM121 WILD-TYPE 224 234 191
'POM121 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S1249.  Gene #111: 'POM121 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
POM121 MUTATED 2 2 1
POM121 WILD-TYPE 194 188 267
'POM121 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S1250.  Gene #111: 'POM121 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
POM121 MUTATED 1 2 1 0
POM121 WILD-TYPE 135 105 182 83
'POM121 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1251.  Gene #111: 'POM121 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
POM121 MUTATED 1 1 2
POM121 WILD-TYPE 221 183 101
'POM121 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S1252.  Gene #111: 'POM121 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
POM121 MUTATED 1 1 2
POM121 WILD-TYPE 183 161 157
'POM121 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1253.  Gene #111: 'POM121 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
POM121 MUTATED 1 0 2 1
POM121 WILD-TYPE 89 138 186 88
'CMA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1254.  Gene #112: 'CMA1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
CMA1 MUTATED 1 2 0
CMA1 WILD-TYPE 294 479 7
'CMA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S1255.  Gene #112: 'CMA1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
CMA1 MUTATED 2 1 0 0
CMA1 WILD-TYPE 158 231 64 166
'CMA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1256.  Gene #112: 'CMA1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
CMA1 MUTATED 1 1 1
CMA1 WILD-TYPE 194 185 188
'CMA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1257.  Gene #112: 'CMA1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
CMA1 MUTATED 1 1 1
CMA1 WILD-TYPE 203 218 146
'QKI MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.95

Table S1258.  Gene #113: 'QKI MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
QKI MUTATED 3 1 0 1
QKI WILD-TYPE 66 42 74 53
'QKI MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.059 (Fisher's exact test), Q value = 0.46

Table S1259.  Gene #113: 'QKI MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
QKI MUTATED 4 0 0 1
QKI WILD-TYPE 59 50 48 78
'QKI MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1260.  Gene #113: 'QKI MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
QKI MUTATED 1 2 0 2
QKI WILD-TYPE 76 91 45 58
'QKI MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1261.  Gene #113: 'QKI MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
QKI MUTATED 3 1 1
QKI WILD-TYPE 135 60 75
'QKI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00734 (Fisher's exact test), Q value = 0.13

Table S1262.  Gene #113: 'QKI MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
QKI MUTATED 4 1 1
QKI WILD-TYPE 291 480 6

Figure S233.  Get High-res Image Gene #113: 'QKI MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'QKI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.98

Table S1263.  Gene #113: 'QKI MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
QKI MUTATED 2 1 1 0
QKI WILD-TYPE 158 231 63 166
'QKI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1264.  Gene #113: 'QKI MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
QKI MUTATED 2 1 1
QKI WILD-TYPE 193 185 188
'QKI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1265.  Gene #113: 'QKI MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
QKI MUTATED 1 1 2
QKI WILD-TYPE 203 218 145
'QKI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1266.  Gene #113: 'QKI MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
QKI MUTATED 2 1 0
QKI WILD-TYPE 225 234 192
'QKI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.95

Table S1267.  Gene #113: 'QKI MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
QKI MUTATED 2 1 0
QKI WILD-TYPE 194 189 268
'TMPRSS6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1268.  Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
TMPRSS6 MUTATED 2 0 3 1
TMPRSS6 WILD-TYPE 67 43 71 53
'TMPRSS6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S1269.  Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
TMPRSS6 MUTATED 3 1 1 1
TMPRSS6 WILD-TYPE 60 49 47 78
'TMPRSS6 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1270.  Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
TMPRSS6 MUTATED 3 1 1 1
TMPRSS6 WILD-TYPE 74 92 44 59
'TMPRSS6 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.95

Table S1271.  Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
TMPRSS6 MUTATED 2 3 1
TMPRSS6 WILD-TYPE 136 58 75
'TMPRSS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 0.43

Table S1272.  Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TMPRSS6 MUTATED 7 2 0
TMPRSS6 WILD-TYPE 288 479 7
'TMPRSS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.27

Table S1273.  Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TMPRSS6 MUTATED 5 1 0 0
TMPRSS6 WILD-TYPE 155 231 64 166

Figure S234.  Get High-res Image Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'TMPRSS6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.89

Table S1274.  Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TMPRSS6 MUTATED 5 1 1
TMPRSS6 WILD-TYPE 190 185 188
'TMPRSS6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.67

Table S1275.  Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TMPRSS6 MUTATED 5 2 0
TMPRSS6 WILD-TYPE 199 217 147
'TMPRSS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00152 (Fisher's exact test), Q value = 0.037

Table S1276.  Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TMPRSS6 MUTATED 8 1 0
TMPRSS6 WILD-TYPE 219 234 192

Figure S235.  Get High-res Image Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'TMPRSS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00695 (Fisher's exact test), Q value = 0.13

Table S1277.  Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TMPRSS6 MUTATED 6 3 0
TMPRSS6 WILD-TYPE 190 187 268

Figure S236.  Get High-res Image Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'TMPRSS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.85

Table S1278.  Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TMPRSS6 MUTATED 1 2 0 0
TMPRSS6 WILD-TYPE 135 105 183 83
'TMPRSS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.78

Table S1279.  Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TMPRSS6 MUTATED 1 0 2
TMPRSS6 WILD-TYPE 221 184 101
'TMPRSS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S1280.  Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TMPRSS6 MUTATED 2 0 1
TMPRSS6 WILD-TYPE 182 162 158
'TMPRSS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S1281.  Gene #114: 'TMPRSS6 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TMPRSS6 MUTATED 1 0 1 1
TMPRSS6 WILD-TYPE 89 138 187 88
'PLXNA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1282.  Gene #115: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PLXNA3 MUTATED 2 8 0
PLXNA3 WILD-TYPE 293 473 7
'PLXNA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S1283.  Gene #115: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
PLXNA3 MUTATED 2 2 2 4
PLXNA3 WILD-TYPE 158 230 62 162
'PLXNA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0907 (Fisher's exact test), Q value = 0.59

Table S1284.  Gene #115: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
PLXNA3 MUTATED 7 1 2
PLXNA3 WILD-TYPE 188 185 187
'PLXNA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S1285.  Gene #115: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
PLXNA3 MUTATED 5 4 1
PLXNA3 WILD-TYPE 199 215 146
'PLXNA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S1286.  Gene #115: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
PLXNA3 MUTATED 4 5 1
PLXNA3 WILD-TYPE 223 230 191
'PLXNA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S1287.  Gene #115: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
PLXNA3 MUTATED 3 4 3
PLXNA3 WILD-TYPE 193 186 265
'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S1288.  Gene #115: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
PLXNA3 MUTATED 3 3 1 2
PLXNA3 WILD-TYPE 133 104 182 81
'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.9

Table S1289.  Gene #115: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
PLXNA3 MUTATED 5 1 3
PLXNA3 WILD-TYPE 217 183 100
'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S1290.  Gene #115: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
PLXNA3 MUTATED 4 4 1
PLXNA3 WILD-TYPE 180 158 158
'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S1291.  Gene #115: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
PLXNA3 MUTATED 1 3 3 2
PLXNA3 WILD-TYPE 89 135 185 87
'EPS8L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S1292.  Gene #116: 'EPS8L1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
EPS8L1 MUTATED 2 2 0
EPS8L1 WILD-TYPE 293 479 7
'EPS8L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S1293.  Gene #116: 'EPS8L1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
EPS8L1 MUTATED 2 1 0 0
EPS8L1 WILD-TYPE 158 231 64 166
'EPS8L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.65

Table S1294.  Gene #116: 'EPS8L1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
EPS8L1 MUTATED 3 0 0
EPS8L1 WILD-TYPE 192 186 189
'EPS8L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0615 (Fisher's exact test), Q value = 0.47

Table S1295.  Gene #116: 'EPS8L1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
EPS8L1 MUTATED 3 0 0
EPS8L1 WILD-TYPE 201 219 147
'EPS8L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S1296.  Gene #116: 'EPS8L1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
EPS8L1 MUTATED 2 0 1
EPS8L1 WILD-TYPE 225 235 191
'EPS8L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1297.  Gene #116: 'EPS8L1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
EPS8L1 MUTATED 1 1 1
EPS8L1 WILD-TYPE 195 189 267
'PRG4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S1298.  Gene #117: 'PRG4 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PRG4 MUTATED 2 8 0
PRG4 WILD-TYPE 293 473 7
'PRG4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1299.  Gene #117: 'PRG4 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
PRG4 MUTATED 2 4 1 3
PRG4 WILD-TYPE 158 228 63 163
'PRG4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0703 (Fisher's exact test), Q value = 0.51

Table S1300.  Gene #117: 'PRG4 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
PRG4 MUTATED 3 5 0
PRG4 WILD-TYPE 192 181 189
'PRG4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1301.  Gene #117: 'PRG4 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
PRG4 MUTATED 1 4 3
PRG4 WILD-TYPE 203 215 144
'PRG4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S1302.  Gene #117: 'PRG4 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
PRG4 MUTATED 1 4 4
PRG4 WILD-TYPE 226 231 188
'PRG4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.85

Table S1303.  Gene #117: 'PRG4 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
PRG4 MUTATED 1 5 3
PRG4 WILD-TYPE 195 185 265
'PRG4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S1304.  Gene #117: 'PRG4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
PRG4 MUTATED 4 2 2 0
PRG4 WILD-TYPE 132 105 181 83
'PRG4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S1305.  Gene #117: 'PRG4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
PRG4 MUTATED 3 3 2
PRG4 WILD-TYPE 219 181 101
'PRG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S1306.  Gene #117: 'PRG4 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
PRG4 MUTATED 2 2 4
PRG4 WILD-TYPE 182 160 155
'PRG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1307.  Gene #117: 'PRG4 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
PRG4 MUTATED 2 1 3 2
PRG4 WILD-TYPE 88 137 185 87
'RFX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1308.  Gene #118: 'RFX4 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
RFX4 MUTATED 2 4 0
RFX4 WILD-TYPE 293 477 7
'RFX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.86

Table S1309.  Gene #118: 'RFX4 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
RFX4 MUTATED 2 0 1 2
RFX4 WILD-TYPE 158 232 63 164
'RFX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.95

Table S1310.  Gene #118: 'RFX4 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
RFX4 MUTATED 3 1 0
RFX4 WILD-TYPE 192 185 189
'RFX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S1311.  Gene #118: 'RFX4 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
RFX4 MUTATED 2 1 1
RFX4 WILD-TYPE 202 218 146
'RFX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1312.  Gene #118: 'RFX4 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
RFX4 MUTATED 1 2 1
RFX4 WILD-TYPE 226 233 191
'RFX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.98

Table S1313.  Gene #118: 'RFX4 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
RFX4 MUTATED 0 1 3
RFX4 WILD-TYPE 196 189 265
'RFX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1314.  Gene #118: 'RFX4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
RFX4 MUTATED 0 1 2 1
RFX4 WILD-TYPE 136 106 181 82
'RFX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1315.  Gene #118: 'RFX4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
RFX4 MUTATED 1 2 1
RFX4 WILD-TYPE 221 182 102
'RFX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S1316.  Gene #118: 'RFX4 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
RFX4 MUTATED 0 2 2
RFX4 WILD-TYPE 184 160 157
'RFX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S1317.  Gene #118: 'RFX4 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
RFX4 MUTATED 0 2 2 0
RFX4 WILD-TYPE 90 136 186 89
'MYT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.74

Table S1318.  Gene #119: 'MYT1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
MYT1 MUTATED 0 6 0
MYT1 WILD-TYPE 295 475 7
'MYT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.95

Table S1319.  Gene #119: 'MYT1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
MYT1 MUTATED 1 4 1 0
MYT1 WILD-TYPE 159 228 63 166
'MYT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S1320.  Gene #119: 'MYT1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
MYT1 MUTATED 2 3 1
MYT1 WILD-TYPE 225 232 191
'MYT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.23

Table S1321.  Gene #119: 'MYT1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
MYT1 MUTATED 0 5 1
MYT1 WILD-TYPE 196 185 267

Figure S237.  Get High-res Image Gene #119: 'MYT1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'MYT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S1322.  Gene #119: 'MYT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
MYT1 MUTATED 0 2 3 1
MYT1 WILD-TYPE 136 105 180 82
'MYT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S1323.  Gene #119: 'MYT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
MYT1 MUTATED 2 2 2
MYT1 WILD-TYPE 220 182 101
'MYT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S1324.  Gene #119: 'MYT1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
MYT1 MUTATED 1 2 3
MYT1 WILD-TYPE 183 160 156
'MYT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S1325.  Gene #119: 'MYT1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
MYT1 MUTATED 1 1 3 1
MYT1 WILD-TYPE 89 137 185 88
'GFRA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S1326.  Gene #120: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
GFRA4 MUTATED 2 1 0
GFRA4 WILD-TYPE 293 480 7
'GFRA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1327.  Gene #120: 'GFRA4 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
GFRA4 MUTATED 2 1 0 0
GFRA4 WILD-TYPE 158 231 64 166
'PASD1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.97

Table S1328.  Gene #121: 'PASD1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
PASD1 MUTATED 3 1 0 0
PASD1 WILD-TYPE 74 92 45 60
'PASD1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.00768 (Fisher's exact test), Q value = 0.13

Table S1329.  Gene #121: 'PASD1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
PASD1 MUTATED 0 0 4
PASD1 WILD-TYPE 138 61 72

Figure S238.  Get High-res Image Gene #121: 'PASD1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

'PASD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S1330.  Gene #121: 'PASD1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PASD1 MUTATED 4 4 0
PASD1 WILD-TYPE 291 477 7
'PASD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1331.  Gene #121: 'PASD1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
PASD1 MUTATED 3 2 0 2
PASD1 WILD-TYPE 157 230 64 164
'PASD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S1332.  Gene #121: 'PASD1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
PASD1 MUTATED 2 2 3
PASD1 WILD-TYPE 193 184 186
'PASD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S1333.  Gene #121: 'PASD1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
PASD1 MUTATED 3 2 2
PASD1 WILD-TYPE 201 217 145
'PASD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.65

Table S1334.  Gene #121: 'PASD1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
PASD1 MUTATED 0 1 3
PASD1 WILD-TYPE 227 234 189
'PASD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.98

Table S1335.  Gene #121: 'PASD1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
PASD1 MUTATED 0 1 3
PASD1 WILD-TYPE 196 189 265
'PASD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S1336.  Gene #121: 'PASD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
PASD1 MUTATED 1 1 1 1
PASD1 WILD-TYPE 135 106 182 82
'PASD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1337.  Gene #121: 'PASD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
PASD1 MUTATED 1 3 0
PASD1 WILD-TYPE 221 181 103
'PASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 0.53

Table S1338.  Gene #121: 'PASD1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
PASD1 MUTATED 0 1 3
PASD1 WILD-TYPE 184 161 156
'PASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1339.  Gene #121: 'PASD1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
PASD1 MUTATED 0 2 2 0
PASD1 WILD-TYPE 90 136 186 89
'TNFRSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1340.  Gene #122: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TNFRSF9 MUTATED 2 2 0
TNFRSF9 WILD-TYPE 293 479 7
'TNFRSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0671 (Fisher's exact test), Q value = 0.49

Table S1341.  Gene #122: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TNFRSF9 MUTATED 1 1 2 0
TNFRSF9 WILD-TYPE 159 231 62 166
'TNFRSF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S1342.  Gene #122: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TNFRSF9 MUTATED 1 2 1
TNFRSF9 WILD-TYPE 194 184 188
'TNFRSF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S1343.  Gene #122: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TNFRSF9 MUTATED 1 1 2
TNFRSF9 WILD-TYPE 203 218 145
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1344.  Gene #122: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TNFRSF9 MUTATED 1 1 1
TNFRSF9 WILD-TYPE 226 234 191
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1345.  Gene #122: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TNFRSF9 MUTATED 1 1 1
TNFRSF9 WILD-TYPE 195 189 267
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S1346.  Gene #122: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TNFRSF9 MUTATED 2 0 1 0
TNFRSF9 WILD-TYPE 134 107 182 83
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S1347.  Gene #122: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TNFRSF9 MUTATED 1 1 1
TNFRSF9 WILD-TYPE 221 183 102
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1348.  Gene #122: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TNFRSF9 MUTATED 2 0 1
TNFRSF9 WILD-TYPE 182 162 158
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S1349.  Gene #122: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TNFRSF9 MUTATED 0 0 2 1
TNFRSF9 WILD-TYPE 90 138 186 88
'EGR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S1350.  Gene #123: 'EGR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
EGR1 MUTATED 2 0 1 0
EGR1 WILD-TYPE 67 43 73 54
'EGR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S1351.  Gene #123: 'EGR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
EGR1 MUTATED 1 0 0 2
EGR1 WILD-TYPE 62 50 48 77
'EGR1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.91

Table S1352.  Gene #123: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
EGR1 MUTATED 1 0 0 2
EGR1 WILD-TYPE 76 93 45 58
'EGR1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.85

Table S1353.  Gene #123: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
EGR1 MUTATED 1 2 0
EGR1 WILD-TYPE 137 59 76
'EGR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1354.  Gene #123: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
EGR1 MUTATED 2 3 0
EGR1 WILD-TYPE 293 478 7
'EGR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.65

Table S1355.  Gene #123: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
EGR1 MUTATED 3 0 0
EGR1 WILD-TYPE 192 186 189
'EGR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.064 (Fisher's exact test), Q value = 0.48

Table S1356.  Gene #123: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
EGR1 MUTATED 3 0 0
EGR1 WILD-TYPE 201 219 147
'EGR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.79

Table S1357.  Gene #123: 'EGR1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
EGR1 MUTATED 3 0 1
EGR1 WILD-TYPE 224 235 191
'EGR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1358.  Gene #123: 'EGR1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
EGR1 MUTATED 2 1 1
EGR1 WILD-TYPE 194 189 267
'FAM126B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1359.  Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
FAM126B MUTATED 1 0 3 0
FAM126B WILD-TYPE 68 43 71 54
'FAM126B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0293 (Fisher's exact test), Q value = 0.3

Table S1360.  Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
FAM126B MUTATED 1 0 3 0
FAM126B WILD-TYPE 62 50 45 79

Figure S239.  Get High-res Image Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FAM126B MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1361.  Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
FAM126B MUTATED 2 2 0 0
FAM126B WILD-TYPE 75 91 45 60
'FAM126B MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1362.  Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
FAM126B MUTATED 1 1 2
FAM126B WILD-TYPE 137 60 74
'FAM126B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.36

Table S1363.  Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
FAM126B MUTATED 4 3 1
FAM126B WILD-TYPE 291 478 6

Figure S240.  Get High-res Image Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'FAM126B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1364.  Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
FAM126B MUTATED 2 1 0 1
FAM126B WILD-TYPE 158 231 64 165
'FAM126B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S1365.  Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
FAM126B MUTATED 2 1 3
FAM126B WILD-TYPE 193 185 186
'FAM126B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S1366.  Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
FAM126B MUTATED 3 2 1
FAM126B WILD-TYPE 201 217 146
'FAM126B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.95

Table S1367.  Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
FAM126B MUTATED 3 1 0
FAM126B WILD-TYPE 224 234 192
'FAM126B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1368.  Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
FAM126B MUTATED 1 2 1
FAM126B WILD-TYPE 195 188 267
'FAM126B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.85

Table S1369.  Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
FAM126B MUTATED 1 2 0 1
FAM126B WILD-TYPE 135 105 183 82
'FAM126B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.85

Table S1370.  Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
FAM126B MUTATED 2 0 2
FAM126B WILD-TYPE 220 184 101
'FAM126B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S1371.  Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
FAM126B MUTATED 1 2 1
FAM126B WILD-TYPE 183 160 158
'FAM126B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S1372.  Gene #124: 'FAM126B MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
FAM126B MUTATED 1 2 1 0
FAM126B WILD-TYPE 89 136 187 89
'SON MUTATION STATUS' versus 'CN_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S1373.  Gene #125: 'SON MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
SON MUTATED 2 7 0
SON WILD-TYPE 293 474 7
'SON MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1374.  Gene #125: 'SON MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
SON MUTATED 4 2 0 2
SON WILD-TYPE 156 230 64 164
'SON MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.9

Table S1375.  Gene #125: 'SON MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
SON MUTATED 5 1 1
SON WILD-TYPE 190 185 188
'SON MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1376.  Gene #125: 'SON MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
SON MUTATED 4 1 2
SON WILD-TYPE 200 218 145
'SON MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S1377.  Gene #125: 'SON MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
SON MUTATED 4 3 2
SON WILD-TYPE 223 232 190
'SON MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S1378.  Gene #125: 'SON MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
SON MUTATED 3 3 3
SON WILD-TYPE 193 187 265
'SON MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S1379.  Gene #125: 'SON MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
SON MUTATED 2 2 2 2
SON WILD-TYPE 134 105 181 81
'SON MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S1380.  Gene #125: 'SON MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
SON MUTATED 3 2 3
SON WILD-TYPE 219 182 100
'SON MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S1381.  Gene #125: 'SON MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
SON MUTATED 3 1 3
SON WILD-TYPE 181 161 156
'SON MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.8

Table S1382.  Gene #125: 'SON MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
SON MUTATED 1 0 3 3
SON WILD-TYPE 89 138 185 86
'AMPD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S1383.  Gene #126: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
AMPD1 MUTATED 0 1 2 0
AMPD1 WILD-TYPE 69 42 72 54
'AMPD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.95

Table S1384.  Gene #126: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
AMPD1 MUTATED 2 0 1 0
AMPD1 WILD-TYPE 61 50 47 79
'AMPD1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S1385.  Gene #126: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
AMPD1 MUTATED 2 1 0 0
AMPD1 WILD-TYPE 75 92 45 60
'AMPD1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.85

Table S1386.  Gene #126: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
AMPD1 MUTATED 1 2 0
AMPD1 WILD-TYPE 137 59 76
'AMPD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1387.  Gene #126: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
AMPD1 MUTATED 4 3 0
AMPD1 WILD-TYPE 291 478 7
'AMPD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.74

Table S1388.  Gene #126: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
AMPD1 MUTATED 4 2 0 0
AMPD1 WILD-TYPE 156 230 64 166
'AMPD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S1389.  Gene #126: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
AMPD1 MUTATED 1 0 2
AMPD1 WILD-TYPE 194 186 187
'AMPD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1390.  Gene #126: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
AMPD1 MUTATED 2 1 0
AMPD1 WILD-TYPE 202 218 147
'AMPD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S1391.  Gene #126: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
AMPD1 MUTATED 4 1 2
AMPD1 WILD-TYPE 223 234 190
'AMPD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S1392.  Gene #126: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
AMPD1 MUTATED 3 2 2
AMPD1 WILD-TYPE 193 188 266
'AMPD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S1393.  Gene #126: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
AMPD1 MUTATED 0 2 2 0
AMPD1 WILD-TYPE 136 105 181 83
'AMPD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1394.  Gene #126: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
AMPD1 MUTATED 1 1 2
AMPD1 WILD-TYPE 221 183 101
'AMPD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.8

Table S1395.  Gene #126: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
AMPD1 MUTATED 1 0 3
AMPD1 WILD-TYPE 183 162 156
'AMPD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1396.  Gene #126: 'AMPD1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
AMPD1 MUTATED 0 1 2 1
AMPD1 WILD-TYPE 90 137 186 88
'TNFSF9 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1397.  Gene #127: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
TNFSF9 MUTATED 2 1 0 0
TNFSF9 WILD-TYPE 75 92 45 60
'TNFSF9 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.98

Table S1398.  Gene #127: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
TNFSF9 MUTATED 1 0 2
TNFSF9 WILD-TYPE 137 61 74
'TNFSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S1399.  Gene #127: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TNFSF9 MUTATED 3 2 0
TNFSF9 WILD-TYPE 292 479 7
'TNFSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1400.  Gene #127: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TNFSF9 MUTATED 3 1 0 1
TNFSF9 WILD-TYPE 157 231 64 165
'TNFSF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1401.  Gene #127: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TNFSF9 MUTATED 2 0 3
TNFSF9 WILD-TYPE 193 186 186
'TNFSF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S1402.  Gene #127: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TNFSF9 MUTATED 2 3 0
TNFSF9 WILD-TYPE 202 216 147
'MYH11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1403.  Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
MYH11 MUTATED 1 1 2 1
MYH11 WILD-TYPE 68 42 72 53
'MYH11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S1404.  Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
MYH11 MUTATED 0 2 1 2
MYH11 WILD-TYPE 63 48 47 77
'MYH11 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 0.53

Table S1405.  Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
MYH11 MUTATED 1 1 3 0
MYH11 WILD-TYPE 76 92 42 60
'MYH11 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S1406.  Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
MYH11 MUTATED 4 0 1
MYH11 WILD-TYPE 134 61 75
'MYH11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S1407.  Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
MYH11 MUTATED 6 8 0
MYH11 WILD-TYPE 289 473 7
'MYH11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S1408.  Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
MYH11 MUTATED 3 3 1 3
MYH11 WILD-TYPE 157 229 63 163
'MYH11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.41

Table S1409.  Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
MYH11 MUTATED 6 3 0
MYH11 WILD-TYPE 189 183 189

Figure S241.  Get High-res Image Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

'MYH11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1410.  Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
MYH11 MUTATED 3 4 2
MYH11 WILD-TYPE 201 215 145
'MYH11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S1411.  Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
MYH11 MUTATED 4 3 3
MYH11 WILD-TYPE 223 232 189
'MYH11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S1412.  Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
MYH11 MUTATED 3 4 3
MYH11 WILD-TYPE 193 186 265
'MYH11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1413.  Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
MYH11 MUTATED 2 2 4 1
MYH11 WILD-TYPE 134 105 179 82
'MYH11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S1414.  Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
MYH11 MUTATED 3 3 3
MYH11 WILD-TYPE 219 181 100
'MYH11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S1415.  Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
MYH11 MUTATED 2 3 4
MYH11 WILD-TYPE 182 159 155
'MYH11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S1416.  Gene #128: 'MYH11 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
MYH11 MUTATED 0 3 4 2
MYH11 WILD-TYPE 90 135 184 87
'FMR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.85

Table S1417.  Gene #129: 'FMR1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
FMR1 MUTATED 0 5 0
FMR1 WILD-TYPE 295 476 7
'FMR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1418.  Gene #129: 'FMR1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
FMR1 MUTATED 1 2 1 1
FMR1 WILD-TYPE 159 230 63 165
'FMR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S1419.  Gene #129: 'FMR1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
FMR1 MUTATED 1 2 2
FMR1 WILD-TYPE 194 184 187
'FMR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1420.  Gene #129: 'FMR1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
FMR1 MUTATED 2 2 1
FMR1 WILD-TYPE 202 217 146
'FMR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S1421.  Gene #129: 'FMR1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
FMR1 MUTATED 3 2 0
FMR1 WILD-TYPE 224 233 192
'FMR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00189 (Fisher's exact test), Q value = 0.044

Table S1422.  Gene #129: 'FMR1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
FMR1 MUTATED 0 5 0
FMR1 WILD-TYPE 196 185 268

Figure S242.  Get High-res Image Gene #129: 'FMR1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'FMR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.92

Table S1423.  Gene #129: 'FMR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
FMR1 MUTATED 1 3 1 0
FMR1 WILD-TYPE 135 104 182 83
'FMR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S1424.  Gene #129: 'FMR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
FMR1 MUTATED 1 2 2
FMR1 WILD-TYPE 221 182 101
'FMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S1425.  Gene #129: 'FMR1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
FMR1 MUTATED 3 0 2
FMR1 WILD-TYPE 181 162 157
'FMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1426.  Gene #129: 'FMR1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
FMR1 MUTATED 1 1 2 1
FMR1 WILD-TYPE 89 137 186 88
'SOX13 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1427.  Gene #130: 'SOX13 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
SOX13 MUTATED 1 1 1 0
SOX13 WILD-TYPE 76 92 44 60
'SOX13 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1428.  Gene #130: 'SOX13 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
SOX13 MUTATED 2 0 1
SOX13 WILD-TYPE 136 61 75
'SOX13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.66

Table S1429.  Gene #130: 'SOX13 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
SOX13 MUTATED 4 1 0
SOX13 WILD-TYPE 291 480 7
'SOX13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.19

Table S1430.  Gene #130: 'SOX13 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
SOX13 MUTATED 4 0 0 0
SOX13 WILD-TYPE 156 232 64 166

Figure S243.  Get High-res Image Gene #130: 'SOX13 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'SOX13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1431.  Gene #130: 'SOX13 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
SOX13 MUTATED 1 1 3
SOX13 WILD-TYPE 194 185 186
'SOX13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1432.  Gene #130: 'SOX13 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
SOX13 MUTATED 2 2 1
SOX13 WILD-TYPE 202 217 146
'SOX13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S1433.  Gene #130: 'SOX13 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
SOX13 MUTATED 2 0 1
SOX13 WILD-TYPE 225 235 191
'SOX13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1434.  Gene #130: 'SOX13 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
SOX13 MUTATED 1 1 1
SOX13 WILD-TYPE 195 189 267
'ANKRD36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.98

Table S1435.  Gene #131: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ANKRD36 MUTATED 1 6 0
ANKRD36 WILD-TYPE 294 475 7
'ANKRD36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 0.59

Table S1436.  Gene #131: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ANKRD36 MUTATED 1 6 0 0
ANKRD36 WILD-TYPE 159 226 64 166
'ANKRD36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S1437.  Gene #131: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ANKRD36 MUTATED 2 1 3
ANKRD36 WILD-TYPE 193 185 186
'ANKRD36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1438.  Gene #131: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ANKRD36 MUTATED 1 4 1
ANKRD36 WILD-TYPE 203 215 146
'ANKRD36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S1439.  Gene #131: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ANKRD36 MUTATED 1 4 2
ANKRD36 WILD-TYPE 226 231 190
'ANKRD36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.98

Table S1440.  Gene #131: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ANKRD36 MUTATED 1 4 2
ANKRD36 WILD-TYPE 195 186 266
'ANKRD36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S1441.  Gene #131: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ANKRD36 MUTATED 1 1 3 2
ANKRD36 WILD-TYPE 135 106 180 81
'ANKRD36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1442.  Gene #131: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ANKRD36 MUTATED 3 3 1
ANKRD36 WILD-TYPE 219 181 102
'ANKRD36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1443.  Gene #131: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ANKRD36 MUTATED 2 3 2
ANKRD36 WILD-TYPE 182 159 157
'ANKRD36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S1444.  Gene #131: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ANKRD36 MUTATED 1 3 2 1
ANKRD36 WILD-TYPE 89 135 186 88
'KLKB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S1445.  Gene #132: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
KLKB1 MUTATED 2 5 0
KLKB1 WILD-TYPE 293 476 7
'KLKB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1446.  Gene #132: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
KLKB1 MUTATED 1 3 0 1
KLKB1 WILD-TYPE 159 229 64 165
'KLKB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.78

Table S1447.  Gene #132: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
KLKB1 MUTATED 4 2 0
KLKB1 WILD-TYPE 191 184 189
'KLKB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1448.  Gene #132: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
KLKB1 MUTATED 2 2 2
KLKB1 WILD-TYPE 202 217 145
'KLKB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1449.  Gene #132: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
KLKB1 MUTATED 2 2 2
KLKB1 WILD-TYPE 225 233 190
'KLKB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S1450.  Gene #132: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
KLKB1 MUTATED 1 3 2
KLKB1 WILD-TYPE 195 187 266
'KLKB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S1451.  Gene #132: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
KLKB1 MUTATED 2 1 2 0
KLKB1 WILD-TYPE 134 106 181 83
'KLKB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1452.  Gene #132: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
KLKB1 MUTATED 2 2 1
KLKB1 WILD-TYPE 220 182 102
'KLKB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.92

Table S1453.  Gene #132: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
KLKB1 MUTATED 2 0 3
KLKB1 WILD-TYPE 182 162 156
'KLKB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S1454.  Gene #132: 'KLKB1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
KLKB1 MUTATED 1 1 3 0
KLKB1 WILD-TYPE 89 137 185 89
'ST3GAL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S1455.  Gene #133: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ST3GAL6 MUTATED 3 2 0
ST3GAL6 WILD-TYPE 292 479 7
'ST3GAL6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.97

Table S1456.  Gene #133: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ST3GAL6 MUTATED 2 0 0 1
ST3GAL6 WILD-TYPE 158 232 64 165
'ST3GAL6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.89

Table S1457.  Gene #133: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ST3GAL6 MUTATED 1 0 3
ST3GAL6 WILD-TYPE 194 186 186
'ST3GAL6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.26

Table S1458.  Gene #133: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ST3GAL6 MUTATED 4 0 0
ST3GAL6 WILD-TYPE 200 219 147

Figure S244.  Get High-res Image Gene #133: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

'ST3GAL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0592 (Fisher's exact test), Q value = 0.46

Table S1459.  Gene #133: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ST3GAL6 MUTATED 4 0 1
ST3GAL6 WILD-TYPE 223 235 191
'ST3GAL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S1460.  Gene #133: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ST3GAL6 MUTATED 3 1 1
ST3GAL6 WILD-TYPE 193 189 267
'ST3GAL6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1461.  Gene #133: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ST3GAL6 MUTATED 1 1 1 0
ST3GAL6 WILD-TYPE 135 106 182 83
'ST3GAL6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0523 (Fisher's exact test), Q value = 0.43

Table S1462.  Gene #133: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ST3GAL6 MUTATED 0 1 2
ST3GAL6 WILD-TYPE 222 183 101
'ST3GAL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S1463.  Gene #133: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ST3GAL6 MUTATED 1 0 2
ST3GAL6 WILD-TYPE 183 162 157
'ST3GAL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.78

Table S1464.  Gene #133: 'ST3GAL6 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ST3GAL6 MUTATED 0 0 1 2
ST3GAL6 WILD-TYPE 90 138 187 87
'HTT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.85

Table S1465.  Gene #134: 'HTT MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
HTT MUTATED 0 5 0
HTT WILD-TYPE 295 476 7
'HTT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.42

Table S1466.  Gene #134: 'HTT MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
HTT MUTATED 1 0 0 4
HTT WILD-TYPE 159 232 64 162

Figure S245.  Get High-res Image Gene #134: 'HTT MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'HTT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.97

Table S1467.  Gene #134: 'HTT MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
HTT MUTATED 3 2 0
HTT WILD-TYPE 192 184 189
'HTT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1468.  Gene #134: 'HTT MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
HTT MUTATED 1 2 2
HTT WILD-TYPE 203 217 145
'HTT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.81

Table S1469.  Gene #134: 'HTT MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
HTT MUTATED 2 0 3
HTT WILD-TYPE 225 235 189
'HTT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S1470.  Gene #134: 'HTT MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
HTT MUTATED 0 2 3
HTT WILD-TYPE 196 188 265
'HTT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.95

Table S1471.  Gene #134: 'HTT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
HTT MUTATED 0 2 3 0
HTT WILD-TYPE 136 105 180 83
'HTT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.27

Table S1472.  Gene #134: 'HTT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
HTT MUTATED 0 2 3
HTT WILD-TYPE 222 182 100

Figure S246.  Get High-res Image Gene #134: 'HTT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'HTT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S1473.  Gene #134: 'HTT MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
HTT MUTATED 1 1 3
HTT WILD-TYPE 183 161 156
'HTT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1474.  Gene #134: 'HTT MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
HTT MUTATED 0 1 3 1
HTT WILD-TYPE 90 137 185 88
'AK7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.74

Table S1475.  Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
AK7 MUTATED 0 0 2 3
AK7 WILD-TYPE 69 43 72 51
'AK7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.69

Table S1476.  Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
AK7 MUTATED 0 0 1 4
AK7 WILD-TYPE 63 50 47 75
'AK7 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1477.  Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
AK7 MUTATED 1 3 1 0
AK7 WILD-TYPE 76 90 44 60
'AK7 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.9

Table S1478.  Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
AK7 MUTATED 2 0 3
AK7 WILD-TYPE 136 61 73
'AK7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 0.43

Table S1479.  Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
AK7 MUTATED 7 2 0
AK7 WILD-TYPE 288 479 7
'AK7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0719 (Fisher's exact test), Q value = 0.51

Table S1480.  Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
AK7 MUTATED 4 1 0 0
AK7 WILD-TYPE 156 231 64 166
'AK7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S1481.  Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
AK7 MUTATED 2 3 2
AK7 WILD-TYPE 193 183 187
'AK7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S1482.  Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
AK7 MUTATED 1 4 2
AK7 WILD-TYPE 203 215 145
'AK7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.81

Table S1483.  Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
AK7 MUTATED 5 1 1
AK7 WILD-TYPE 222 234 191
'AK7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0861 (Fisher's exact test), Q value = 0.58

Table S1484.  Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
AK7 MUTATED 5 1 1
AK7 WILD-TYPE 191 189 267
'AK7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0811 (Fisher's exact test), Q value = 0.56

Table S1485.  Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
AK7 MUTATED 0 3 1 0
AK7 WILD-TYPE 136 104 182 83
'AK7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00168 (Fisher's exact test), Q value = 0.04

Table S1486.  Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
AK7 MUTATED 0 0 4
AK7 WILD-TYPE 222 184 99

Figure S247.  Get High-res Image Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'AK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.95

Table S1487.  Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
AK7 MUTATED 3 0 1
AK7 WILD-TYPE 181 162 158
'AK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0011 (Fisher's exact test), Q value = 0.028

Table S1488.  Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
AK7 MUTATED 0 0 0 4
AK7 WILD-TYPE 90 138 188 85

Figure S248.  Get High-res Image Gene #135: 'AK7 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZZZ3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1489.  Gene #136: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ZZZ3 MUTATED 1 3 0
ZZZ3 WILD-TYPE 294 478 7
'ZZZ3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1490.  Gene #136: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ZZZ3 MUTATED 1 2 0 0
ZZZ3 WILD-TYPE 159 230 64 166
'ZZZ3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1491.  Gene #136: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ZZZ3 MUTATED 2 1 1
ZZZ3 WILD-TYPE 193 185 188
'ZZZ3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1492.  Gene #136: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ZZZ3 MUTATED 2 2 0
ZZZ3 WILD-TYPE 202 217 147
'ZZZ3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1493.  Gene #136: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ZZZ3 MUTATED 2 2 0
ZZZ3 WILD-TYPE 225 233 192
'ZZZ3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0717 (Fisher's exact test), Q value = 0.51

Table S1494.  Gene #136: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ZZZ3 MUTATED 1 3 0
ZZZ3 WILD-TYPE 195 187 268
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1495.  Gene #136: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ZZZ3 MUTATED 1 1 0 1
ZZZ3 WILD-TYPE 135 106 183 82
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S1496.  Gene #136: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ZZZ3 MUTATED 2 0 1
ZZZ3 WILD-TYPE 220 184 102
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S1497.  Gene #136: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ZZZ3 MUTATED 2 0 1
ZZZ3 WILD-TYPE 182 162 158
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S1498.  Gene #136: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ZZZ3 MUTATED 1 1 1 0
ZZZ3 WILD-TYPE 89 137 187 89
'NPTX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.35

Table S1499.  Gene #138: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
NPTX1 MUTATED 2 2 1
NPTX1 WILD-TYPE 293 479 6

Figure S249.  Get High-res Image Gene #138: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'NPTX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.84

Table S1500.  Gene #138: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
NPTX1 MUTATED 2 0 1 1
NPTX1 WILD-TYPE 158 232 63 165
'NPTX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1501.  Gene #138: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
NPTX1 MUTATED 2 0 1
NPTX1 WILD-TYPE 193 186 188
'NPTX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1502.  Gene #138: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
NPTX1 MUTATED 2 0 1
NPTX1 WILD-TYPE 202 219 146
'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.95

Table S1503.  Gene #138: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
NPTX1 MUTATED 3 1 0
NPTX1 WILD-TYPE 224 234 192
'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1504.  Gene #138: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
NPTX1 MUTATED 2 1 1
NPTX1 WILD-TYPE 194 189 267
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 0.59

Table S1505.  Gene #138: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
NPTX1 MUTATED 0 2 0 1
NPTX1 WILD-TYPE 136 105 183 82
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.78

Table S1506.  Gene #138: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
NPTX1 MUTATED 1 0 2
NPTX1 WILD-TYPE 221 184 101
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S1507.  Gene #138: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
NPTX1 MUTATED 2 0 1
NPTX1 WILD-TYPE 182 162 158
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1508.  Gene #138: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
NPTX1 MUTATED 0 0 2 1
NPTX1 WILD-TYPE 90 138 186 88
'C10ORF46 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1509.  Gene #139: 'C10ORF46 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
C10ORF46 MUTATED 1 2 0
C10ORF46 WILD-TYPE 294 479 7
'C10ORF46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1510.  Gene #139: 'C10ORF46 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
C10ORF46 MUTATED 1 1 1
C10ORF46 WILD-TYPE 226 234 191
'C10ORF46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S1511.  Gene #139: 'C10ORF46 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
C10ORF46 MUTATED 0 2 1
C10ORF46 WILD-TYPE 196 188 267
'CHGB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1512.  Gene #140: 'CHGB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
CHGB MUTATED 1 0 2 0
CHGB WILD-TYPE 68 43 72 54
'CHGB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S1513.  Gene #140: 'CHGB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
CHGB MUTATED 2 0 0 1
CHGB WILD-TYPE 61 50 48 78
'CHGB MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S1514.  Gene #140: 'CHGB MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
CHGB MUTATED 2 2 0 0
CHGB WILD-TYPE 75 91 45 60
'CHGB MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1515.  Gene #140: 'CHGB MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
CHGB MUTATED 1 1 2
CHGB WILD-TYPE 137 60 74
'CHGB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S1516.  Gene #140: 'CHGB MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
CHGB MUTATED 4 4 0
CHGB WILD-TYPE 291 477 7
'CHGB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S1517.  Gene #140: 'CHGB MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
CHGB MUTATED 3 2 0 1
CHGB WILD-TYPE 157 230 64 165
'CHGB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.89

Table S1518.  Gene #140: 'CHGB MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
CHGB MUTATED 5 1 1
CHGB WILD-TYPE 190 185 188
'CHGB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.98

Table S1519.  Gene #140: 'CHGB MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
CHGB MUTATED 3 4 0
CHGB WILD-TYPE 201 215 147
'CHGB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1520.  Gene #140: 'CHGB MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
CHGB MUTATED 3 2 1
CHGB WILD-TYPE 224 233 191
'CHGB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S1521.  Gene #140: 'CHGB MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
CHGB MUTATED 2 3 1
CHGB WILD-TYPE 194 187 267
'CHGB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S1522.  Gene #140: 'CHGB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
CHGB MUTATED 2 1 1 0
CHGB WILD-TYPE 134 106 182 83
'CHGB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S1523.  Gene #140: 'CHGB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
CHGB MUTATED 1 1 2
CHGB WILD-TYPE 221 183 101
'CHGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S1524.  Gene #140: 'CHGB MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
CHGB MUTATED 1 1 2
CHGB WILD-TYPE 183 161 157
'CHGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.95

Table S1525.  Gene #140: 'CHGB MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
CHGB MUTATED 2 0 2 0
CHGB WILD-TYPE 88 138 186 89
'MTMR12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.85

Table S1526.  Gene #141: 'MTMR12 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
MTMR12 MUTATED 3 1 0
MTMR12 WILD-TYPE 292 480 7
'MTMR12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 0.41

Table S1527.  Gene #141: 'MTMR12 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
MTMR12 MUTATED 3 0 0 0
MTMR12 WILD-TYPE 157 232 64 166

Figure S250.  Get High-res Image Gene #141: 'MTMR12 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'MTMR12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.26

Table S1528.  Gene #141: 'MTMR12 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
MTMR12 MUTATED 4 0 0
MTMR12 WILD-TYPE 223 235 192

Figure S251.  Get High-res Image Gene #141: 'MTMR12 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'MTMR12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.64

Table S1529.  Gene #141: 'MTMR12 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
MTMR12 MUTATED 3 1 0
MTMR12 WILD-TYPE 193 189 268
'CD1D MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S1530.  Gene #142: 'CD1D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
CD1D MUTATED 1 1 1 0
CD1D WILD-TYPE 68 42 73 54
'CD1D MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1531.  Gene #142: 'CD1D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
CD1D MUTATED 1 1 0 1
CD1D WILD-TYPE 62 49 48 78
'CD1D MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1532.  Gene #142: 'CD1D MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
CD1D MUTATED 2 2 0 0
CD1D WILD-TYPE 75 91 45 60
'CD1D MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.69

Table S1533.  Gene #142: 'CD1D MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
CD1D MUTATED 1 0 3
CD1D WILD-TYPE 137 61 73
'CD1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.44

Table S1534.  Gene #142: 'CD1D MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
CD1D MUTATED 4 0 0
CD1D WILD-TYPE 291 481 7
'CD1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 0.42

Table S1535.  Gene #142: 'CD1D MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
CD1D MUTATED 3 0 0 0
CD1D WILD-TYPE 157 232 64 166

Figure S252.  Get High-res Image Gene #142: 'CD1D MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'CD1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1536.  Gene #142: 'CD1D MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
CD1D MUTATED 2 0 1
CD1D WILD-TYPE 193 186 188
'CD1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S1537.  Gene #142: 'CD1D MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
CD1D MUTATED 1 2 0
CD1D WILD-TYPE 203 217 147
'GABRA6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.65

Table S1538.  Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
GABRA6 MUTATED 1 0 6 2
GABRA6 WILD-TYPE 68 43 68 52
'GABRA6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S1539.  Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
GABRA6 MUTATED 1 1 3 4
GABRA6 WILD-TYPE 62 49 45 75
'GABRA6 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.75

Table S1540.  Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
GABRA6 MUTATED 5 3 3 0
GABRA6 WILD-TYPE 72 90 42 60
'GABRA6 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.67

Table S1541.  Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
GABRA6 MUTATED 3 2 6
GABRA6 WILD-TYPE 135 59 70
'GABRA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00352 (Fisher's exact test), Q value = 0.073

Table S1542.  Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
GABRA6 MUTATED 12 3 0
GABRA6 WILD-TYPE 283 478 7

Figure S253.  Get High-res Image Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'GABRA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0093 (Fisher's exact test), Q value = 0.15

Table S1543.  Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
GABRA6 MUTATED 7 2 1 0
GABRA6 WILD-TYPE 153 230 63 166

Figure S254.  Get High-res Image Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'GABRA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S1544.  Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
GABRA6 MUTATED 2 3 5
GABRA6 WILD-TYPE 193 183 184
'GABRA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S1545.  Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
GABRA6 MUTATED 3 4 3
GABRA6 WILD-TYPE 201 215 144
'GABRA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00114 (Fisher's exact test), Q value = 0.028

Table S1546.  Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
GABRA6 MUTATED 9 0 2
GABRA6 WILD-TYPE 218 235 190

Figure S255.  Get High-res Image Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'GABRA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0918 (Fisher's exact test), Q value = 0.59

Table S1547.  Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
GABRA6 MUTATED 7 2 2
GABRA6 WILD-TYPE 189 188 266
'GABRA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1548.  Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
GABRA6 MUTATED 1 2 1 0
GABRA6 WILD-TYPE 135 105 182 83
'GABRA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.19

Table S1549.  Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
GABRA6 MUTATED 0 1 3
GABRA6 WILD-TYPE 222 183 100

Figure S256.  Get High-res Image Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'GABRA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1550.  Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
GABRA6 MUTATED 2 0 2
GABRA6 WILD-TYPE 182 162 157
'GABRA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.91

Table S1551.  Gene #143: 'GABRA6 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
GABRA6 MUTATED 0 0 2 2
GABRA6 WILD-TYPE 90 138 186 87
'SLC2A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1552.  Gene #144: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
SLC2A3 MUTATED 3 2 0
SLC2A3 WILD-TYPE 292 479 7
'SLC2A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.97

Table S1553.  Gene #144: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
SLC2A3 MUTATED 2 0 0 1
SLC2A3 WILD-TYPE 158 232 64 165
'SLC2A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0359 (Fisher's exact test), Q value = 0.35

Table S1554.  Gene #144: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
SLC2A3 MUTATED 4 0 0
SLC2A3 WILD-TYPE 191 186 189

Figure S257.  Get High-res Image Gene #144: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

'SLC2A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1555.  Gene #144: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
SLC2A3 MUTATED 2 2 0
SLC2A3 WILD-TYPE 202 217 147
'SLC2A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.79

Table S1556.  Gene #144: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
SLC2A3 MUTATED 3 0 1
SLC2A3 WILD-TYPE 224 235 191
'SLC2A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1557.  Gene #144: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
SLC2A3 MUTATED 2 1 1
SLC2A3 WILD-TYPE 194 189 267
'SLC2A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0902 (Fisher's exact test), Q value = 0.59

Table S1558.  Gene #144: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
SLC2A3 MUTATED 0 2 0 1
SLC2A3 WILD-TYPE 136 105 183 82
'SLC2A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0525 (Fisher's exact test), Q value = 0.43

Table S1559.  Gene #144: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
SLC2A3 MUTATED 0 1 2
SLC2A3 WILD-TYPE 222 183 101
'SLC2A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1560.  Gene #144: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
SLC2A3 MUTATED 1 1 1
SLC2A3 WILD-TYPE 183 161 158
'SLC2A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1561.  Gene #144: 'SLC2A3 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
SLC2A3 MUTATED 0 1 1 1
SLC2A3 WILD-TYPE 90 137 187 88
'WDR90 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.78

Table S1562.  Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
WDR90 MUTATED 0 1 3 0
WDR90 WILD-TYPE 69 42 71 54
'WDR90 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S1563.  Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
WDR90 MUTATED 0 1 2 1
WDR90 WILD-TYPE 63 49 46 78
'WDR90 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.00944 (Fisher's exact test), Q value = 0.15

Table S1564.  Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
WDR90 MUTATED 0 6 0 0
WDR90 WILD-TYPE 77 87 45 60

Figure S258.  Get High-res Image Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

'WDR90 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S1565.  Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
WDR90 MUTATED 4 0 2
WDR90 WILD-TYPE 134 61 74
'WDR90 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1566.  Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
WDR90 MUTATED 5 4 0
WDR90 WILD-TYPE 290 477 7
'WDR90 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1567.  Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
WDR90 MUTATED 3 1 0 2
WDR90 WILD-TYPE 157 231 64 164
'WDR90 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S1568.  Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
WDR90 MUTATED 3 1 3
WDR90 WILD-TYPE 192 185 186
'WDR90 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.67

Table S1569.  Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
WDR90 MUTATED 5 2 0
WDR90 WILD-TYPE 199 217 147
'WDR90 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.4

Table S1570.  Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
WDR90 MUTATED 5 0 2
WDR90 WILD-TYPE 222 235 190

Figure S259.  Get High-res Image Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'WDR90 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S1571.  Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
WDR90 MUTATED 4 1 2
WDR90 WILD-TYPE 192 189 266
'WDR90 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S1572.  Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
WDR90 MUTATED 0 1 1 1
WDR90 WILD-TYPE 136 106 182 82
'WDR90 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1573.  Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
WDR90 MUTATED 1 1 1
WDR90 WILD-TYPE 221 183 102
'WDR90 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.86

Table S1574.  Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
WDR90 MUTATED 0 1 2
WDR90 WILD-TYPE 184 161 157
'WDR90 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1575.  Gene #145: 'WDR90 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
WDR90 MUTATED 0 1 2 0
WDR90 WILD-TYPE 90 137 186 89
'REXO1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 0.43

Table S1576.  Gene #146: 'REXO1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
REXO1 MUTATED 3 0 0 0
REXO1 WILD-TYPE 74 93 45 60
'REXO1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.0704 (Fisher's exact test), Q value = 0.51

Table S1577.  Gene #146: 'REXO1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
REXO1 MUTATED 0 2 1
REXO1 WILD-TYPE 138 59 75
'REXO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.89

Table S1578.  Gene #146: 'REXO1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
REXO1 MUTATED 5 3 0
REXO1 WILD-TYPE 290 478 7
'REXO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.27

Table S1579.  Gene #146: 'REXO1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
REXO1 MUTATED 5 1 0 0
REXO1 WILD-TYPE 155 231 64 166

Figure S260.  Get High-res Image Gene #146: 'REXO1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'REXO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S1580.  Gene #146: 'REXO1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
REXO1 MUTATED 3 2 1
REXO1 WILD-TYPE 192 184 188
'REXO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.86

Table S1581.  Gene #146: 'REXO1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
REXO1 MUTATED 4 2 0
REXO1 WILD-TYPE 200 217 147
'REXO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S1582.  Gene #146: 'REXO1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
REXO1 MUTATED 3 1 1
REXO1 WILD-TYPE 224 234 191
'REXO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1583.  Gene #146: 'REXO1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
REXO1 MUTATED 2 1 2
REXO1 WILD-TYPE 194 189 266
'REXO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S1584.  Gene #146: 'REXO1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
REXO1 MUTATED 1 1 1 1
REXO1 WILD-TYPE 135 106 182 82
'REXO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S1585.  Gene #146: 'REXO1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
REXO1 MUTATED 1 1 2
REXO1 WILD-TYPE 221 183 101
'REXO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S1586.  Gene #146: 'REXO1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
REXO1 MUTATED 1 1 2
REXO1 WILD-TYPE 183 161 157
'REXO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S1587.  Gene #146: 'REXO1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
REXO1 MUTATED 0 0 3 1
REXO1 WILD-TYPE 90 138 185 88
'TTC30B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.98

Table S1588.  Gene #147: 'TTC30B MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TTC30B MUTATED 1 6 0
TTC30B WILD-TYPE 294 475 7
'TTC30B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S1589.  Gene #147: 'TTC30B MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TTC30B MUTATED 1 4 0 1
TTC30B WILD-TYPE 159 228 64 165
'TTC30B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1590.  Gene #147: 'TTC30B MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TTC30B MUTATED 1 2 0
TTC30B WILD-TYPE 194 184 189
'TTC30B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.85

Table S1591.  Gene #147: 'TTC30B MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TTC30B MUTATED 1 0 2
TTC30B WILD-TYPE 203 219 145
'TTC30B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S1592.  Gene #147: 'TTC30B MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TTC30B MUTATED 2 4 1
TTC30B WILD-TYPE 225 231 191
'TTC30B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.98

Table S1593.  Gene #147: 'TTC30B MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TTC30B MUTATED 1 4 2
TTC30B WILD-TYPE 195 186 266
'TTC30B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.53

Table S1594.  Gene #147: 'TTC30B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TTC30B MUTATED 1 4 1 0
TTC30B WILD-TYPE 135 103 182 83
'TTC30B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1595.  Gene #147: 'TTC30B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TTC30B MUTATED 4 1 1
TTC30B WILD-TYPE 218 183 102
'TTC30B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S1596.  Gene #147: 'TTC30B MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TTC30B MUTATED 1 2 3
TTC30B WILD-TYPE 183 160 156
'TTC30B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1597.  Gene #147: 'TTC30B MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TTC30B MUTATED 0 3 3 0
TTC30B WILD-TYPE 90 135 185 89
'ZMYM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.98

Table S1598.  Gene #148: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ZMYM2 MUTATED 1 6 0
ZMYM2 WILD-TYPE 294 475 7
'ZMYM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S1599.  Gene #148: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ZMYM2 MUTATED 2 2 0 3
ZMYM2 WILD-TYPE 158 230 64 163
'ZMYM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1600.  Gene #148: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ZMYM2 MUTATED 3 1 1
ZMYM2 WILD-TYPE 192 185 188
'ZMYM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1601.  Gene #148: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ZMYM2 MUTATED 2 2 1
ZMYM2 WILD-TYPE 202 217 146
'ZMYM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S1602.  Gene #148: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ZMYM2 MUTATED 2 2 3
ZMYM2 WILD-TYPE 225 233 189
'ZMYM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S1603.  Gene #148: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ZMYM2 MUTATED 1 3 3
ZMYM2 WILD-TYPE 195 187 265
'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.68

Table S1604.  Gene #148: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ZMYM2 MUTATED 0 3 4 0
ZMYM2 WILD-TYPE 136 104 179 83
'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.86

Table S1605.  Gene #148: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ZMYM2 MUTATED 1 4 2
ZMYM2 WILD-TYPE 221 180 101
'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.95

Table S1606.  Gene #148: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ZMYM2 MUTATED 1 2 4
ZMYM2 WILD-TYPE 183 160 155
'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1607.  Gene #148: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ZMYM2 MUTATED 0 1 5 1
ZMYM2 WILD-TYPE 90 137 183 88
'NKPD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.2

Table S1608.  Gene #149: 'NKPD1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
NKPD1 MUTATED 0 2 1
NKPD1 WILD-TYPE 295 479 6

Figure S261.  Get High-res Image Gene #149: 'NKPD1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'NKPD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.85

Table S1609.  Gene #149: 'NKPD1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
NKPD1 MUTATED 0 2 1 0
NKPD1 WILD-TYPE 160 230 63 166
'NKPD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S1610.  Gene #149: 'NKPD1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
NKPD1 MUTATED 1 2 0
NKPD1 WILD-TYPE 194 184 189
'NKPD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.85

Table S1611.  Gene #149: 'NKPD1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
NKPD1 MUTATED 1 0 2
NKPD1 WILD-TYPE 203 219 145
'NKPD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1612.  Gene #149: 'NKPD1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
NKPD1 MUTATED 1 1 1
NKPD1 WILD-TYPE 226 234 191
'NKPD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S1613.  Gene #149: 'NKPD1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
NKPD1 MUTATED 0 2 1
NKPD1 WILD-TYPE 196 188 267
'NKPD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S1614.  Gene #149: 'NKPD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
NKPD1 MUTATED 0 1 2 0
NKPD1 WILD-TYPE 136 106 181 83
'NKPD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S1615.  Gene #149: 'NKPD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
NKPD1 MUTATED 1 1 1
NKPD1 WILD-TYPE 221 183 102
'NKPD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.86

Table S1616.  Gene #149: 'NKPD1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
NKPD1 MUTATED 0 1 2
NKPD1 WILD-TYPE 184 161 157
'NKPD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1617.  Gene #149: 'NKPD1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
NKPD1 MUTATED 0 1 1 1
NKPD1 WILD-TYPE 90 137 187 88
'ALPK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S1618.  Gene #150: 'ALPK3 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ALPK3 MUTATED 2 2 0
ALPK3 WILD-TYPE 293 479 7
'ALPK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 0.41

Table S1619.  Gene #150: 'ALPK3 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ALPK3 MUTATED 3 0 0 0
ALPK3 WILD-TYPE 157 232 64 166

Figure S262.  Get High-res Image Gene #150: 'ALPK3 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'ALPK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S1620.  Gene #150: 'ALPK3 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ALPK3 MUTATED 2 1 0
ALPK3 WILD-TYPE 193 185 189
'ALPK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1621.  Gene #150: 'ALPK3 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ALPK3 MUTATED 1 1 1
ALPK3 WILD-TYPE 203 218 146
'INF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1622.  Gene #151: 'INF2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
INF2 MUTATED 2 2 0
INF2 WILD-TYPE 293 479 7
'INF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1623.  Gene #151: 'INF2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
INF2 MUTATED 1 1 0 1
INF2 WILD-TYPE 159 231 64 165
'INF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S1624.  Gene #151: 'INF2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
INF2 MUTATED 0 1 2
INF2 WILD-TYPE 195 185 187
'INF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1625.  Gene #151: 'INF2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
INF2 MUTATED 1 1 1
INF2 WILD-TYPE 203 218 146
'INF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S1626.  Gene #151: 'INF2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
INF2 MUTATED 2 0 1
INF2 WILD-TYPE 225 235 191
'INF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1627.  Gene #151: 'INF2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
INF2 MUTATED 1 1 1
INF2 WILD-TYPE 195 189 267
'INF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1628.  Gene #151: 'INF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
INF2 MUTATED 1 1 1 0
INF2 WILD-TYPE 135 106 182 83
'INF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0527 (Fisher's exact test), Q value = 0.43

Table S1629.  Gene #151: 'INF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
INF2 MUTATED 0 1 2
INF2 WILD-TYPE 222 183 101
'INF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1630.  Gene #151: 'INF2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
INF2 MUTATED 1 1 1
INF2 WILD-TYPE 183 161 158
'INF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S1631.  Gene #151: 'INF2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
INF2 MUTATED 0 1 1 1
INF2 WILD-TYPE 90 137 187 88
'SGOL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1632.  Gene #152: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
SGOL2 MUTATED 2 0 0 1
SGOL2 WILD-TYPE 67 43 74 53
'SGOL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1633.  Gene #152: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
SGOL2 MUTATED 1 0 0 2
SGOL2 WILD-TYPE 62 50 48 77
'SGOL2 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1634.  Gene #152: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
SGOL2 MUTATED 1 0 1 1
SGOL2 WILD-TYPE 76 93 44 59
'SGOL2 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S1635.  Gene #152: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
SGOL2 MUTATED 2 1 0
SGOL2 WILD-TYPE 136 60 76
'SGOL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1636.  Gene #152: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
SGOL2 MUTATED 2 5 0
SGOL2 WILD-TYPE 293 476 7
'SGOL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1637.  Gene #152: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
SGOL2 MUTATED 1 3 0 1
SGOL2 WILD-TYPE 159 229 64 165
'SGOL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S1638.  Gene #152: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
SGOL2 MUTATED 2 0 1
SGOL2 WILD-TYPE 193 186 188
'SGOL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S1639.  Gene #152: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
SGOL2 MUTATED 1 2 0
SGOL2 WILD-TYPE 203 217 147
'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1640.  Gene #152: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
SGOL2 MUTATED 3 3 1
SGOL2 WILD-TYPE 224 232 191
'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S1641.  Gene #152: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
SGOL2 MUTATED 2 3 2
SGOL2 WILD-TYPE 194 187 266
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S1642.  Gene #152: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
SGOL2 MUTATED 1 1 1 1
SGOL2 WILD-TYPE 135 106 182 82
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1643.  Gene #152: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
SGOL2 MUTATED 2 1 1
SGOL2 WILD-TYPE 220 183 102
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S1644.  Gene #152: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
SGOL2 MUTATED 0 2 2
SGOL2 WILD-TYPE 184 160 157
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1645.  Gene #152: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
SGOL2 MUTATED 1 1 2 0
SGOL2 WILD-TYPE 89 137 186 89
'GPR132 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1646.  Gene #153: 'GPR132 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
GPR132 MUTATED 1 5 0
GPR132 WILD-TYPE 294 476 7
'GPR132 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1647.  Gene #153: 'GPR132 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
GPR132 MUTATED 1 2 1 0
GPR132 WILD-TYPE 159 230 63 166
'GPR132 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1648.  Gene #153: 'GPR132 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
GPR132 MUTATED 1 2 0
GPR132 WILD-TYPE 194 184 189
'GPR132 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1649.  Gene #153: 'GPR132 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
GPR132 MUTATED 1 1 1
GPR132 WILD-TYPE 203 218 146
'GPR132 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S1650.  Gene #153: 'GPR132 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
GPR132 MUTATED 2 1 2
GPR132 WILD-TYPE 225 234 190
'GPR132 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1651.  Gene #153: 'GPR132 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
GPR132 MUTATED 1 2 2
GPR132 WILD-TYPE 195 188 266
'GPR132 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1652.  Gene #153: 'GPR132 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
GPR132 MUTATED 0 2 2 0
GPR132 WILD-TYPE 136 105 181 83
'GPR132 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1653.  Gene #153: 'GPR132 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
GPR132 MUTATED 1 2 1
GPR132 WILD-TYPE 221 182 102
'GPR132 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S1654.  Gene #153: 'GPR132 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
GPR132 MUTATED 0 2 2
GPR132 WILD-TYPE 184 160 157
'GPR132 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S1655.  Gene #153: 'GPR132 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
GPR132 MUTATED 0 1 3 0
GPR132 WILD-TYPE 90 137 185 89
'TP63 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1656.  Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
TP63 MUTATED 1 1 2 1
TP63 WILD-TYPE 68 42 72 53
'TP63 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S1657.  Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
TP63 MUTATED 1 1 2 1
TP63 WILD-TYPE 62 49 46 78
'TP63 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S1658.  Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
TP63 MUTATED 1 1 1 3
TP63 WILD-TYPE 76 92 44 57
'TP63 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S1659.  Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
TP63 MUTATED 2 2 2
TP63 WILD-TYPE 136 59 74
'TP63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S1660.  Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TP63 MUTATED 5 4 0
TP63 WILD-TYPE 290 477 7
'TP63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 0.47

Table S1661.  Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TP63 MUTATED 5 2 0 0
TP63 WILD-TYPE 155 230 64 166
'TP63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.19

Table S1662.  Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TP63 MUTATED 1 0 6
TP63 WILD-TYPE 194 186 183

Figure S263.  Get High-res Image Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

'TP63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.95

Table S1663.  Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TP63 MUTATED 4 3 0
TP63 WILD-TYPE 200 216 147
'TP63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0426 (Fisher's exact test), Q value = 0.4

Table S1664.  Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TP63 MUTATED 5 1 0
TP63 WILD-TYPE 222 234 192

Figure S264.  Get High-res Image Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'TP63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.45

Table S1665.  Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TP63 MUTATED 3 3 0
TP63 WILD-TYPE 193 187 268
'TP63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.9

Table S1666.  Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TP63 MUTATED 2 1 0 0
TP63 WILD-TYPE 134 106 183 83
'TP63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S1667.  Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TP63 MUTATED 2 0 1
TP63 WILD-TYPE 220 184 102
'TP63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 0.48

Table S1668.  Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TP63 MUTATED 0 3 0
TP63 WILD-TYPE 184 159 159
'TP63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.95

Table S1669.  Gene #154: 'TP63 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TP63 MUTATED 1 2 0 0
TP63 WILD-TYPE 89 136 188 89
'ZNF334 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1670.  Gene #155: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
ZNF334 MUTATED 0 4 0
ZNF334 WILD-TYPE 295 477 7
'ZNF334 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S1671.  Gene #155: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
ZNF334 MUTATED 1 1 0 2
ZNF334 WILD-TYPE 159 231 64 164
'ZNF334 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1672.  Gene #155: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
ZNF334 MUTATED 2 0 1
ZNF334 WILD-TYPE 193 186 188
'ZNF334 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S1673.  Gene #155: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
ZNF334 MUTATED 2 1 0
ZNF334 WILD-TYPE 202 218 147
'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1674.  Gene #155: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
ZNF334 MUTATED 1 2 1
ZNF334 WILD-TYPE 226 233 191
'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S1675.  Gene #155: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
ZNF334 MUTATED 0 2 2
ZNF334 WILD-TYPE 196 188 266
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1676.  Gene #155: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
ZNF334 MUTATED 1 1 2 0
ZNF334 WILD-TYPE 135 106 181 83
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.85

Table S1677.  Gene #155: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
ZNF334 MUTATED 2 0 2
ZNF334 WILD-TYPE 220 184 101
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S1678.  Gene #155: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
ZNF334 MUTATED 1 2 1
ZNF334 WILD-TYPE 183 160 158
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S1679.  Gene #155: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
ZNF334 MUTATED 0 1 3 0
ZNF334 WILD-TYPE 90 137 185 89
'RGS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1680.  Gene #156: 'RGS3 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
RGS3 MUTATED 2 6 0
RGS3 WILD-TYPE 293 475 7
'RGS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.94

Table S1681.  Gene #156: 'RGS3 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
RGS3 MUTATED 3 4 0 0
RGS3 WILD-TYPE 157 228 64 166
'RGS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S1682.  Gene #156: 'RGS3 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
RGS3 MUTATED 4 2 1
RGS3 WILD-TYPE 191 184 188
'RGS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.85

Table S1683.  Gene #156: 'RGS3 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
RGS3 MUTATED 5 1 1
RGS3 WILD-TYPE 199 218 146
'RGS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S1684.  Gene #156: 'RGS3 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
RGS3 MUTATED 2 2 3
RGS3 WILD-TYPE 225 233 189
'RGS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S1685.  Gene #156: 'RGS3 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
RGS3 MUTATED 1 3 3
RGS3 WILD-TYPE 195 187 265
'RGS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.88

Table S1686.  Gene #156: 'RGS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
RGS3 MUTATED 0 2 4 0
RGS3 WILD-TYPE 136 105 179 83
'RGS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S1687.  Gene #156: 'RGS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
RGS3 MUTATED 2 2 2
RGS3 WILD-TYPE 220 182 101
'RGS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.97

Table S1688.  Gene #156: 'RGS3 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
RGS3 MUTATED 1 1 4
RGS3 WILD-TYPE 183 161 155
'RGS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S1689.  Gene #156: 'RGS3 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
RGS3 MUTATED 1 1 3 1
RGS3 WILD-TYPE 89 137 185 88
'NKX2-2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.74

Table S1690.  Gene #157: 'NKX2-2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
NKX2-2 MUTATED 0 6 0
NKX2-2 WILD-TYPE 295 475 7
'NKX2-2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1691.  Gene #157: 'NKX2-2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
NKX2-2 MUTATED 1 4 0 1
NKX2-2 WILD-TYPE 159 228 64 165
'NKX2-2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S1692.  Gene #157: 'NKX2-2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
NKX2-2 MUTATED 3 2 1
NKX2-2 WILD-TYPE 192 184 188
'NKX2-2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S1693.  Gene #157: 'NKX2-2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
NKX2-2 MUTATED 2 3 1
NKX2-2 WILD-TYPE 202 216 146
'NKX2-2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S1694.  Gene #157: 'NKX2-2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
NKX2-2 MUTATED 1 4 1
NKX2-2 WILD-TYPE 226 231 191
'NKX2-2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0187 (Fisher's exact test), Q value = 0.24

Table S1695.  Gene #157: 'NKX2-2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
NKX2-2 MUTATED 0 5 1
NKX2-2 WILD-TYPE 196 185 267

Figure S265.  Get High-res Image Gene #157: 'NKX2-2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'NKX2-2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1696.  Gene #157: 'NKX2-2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
NKX2-2 MUTATED 2 2 2 0
NKX2-2 WILD-TYPE 134 105 181 83
'NKX2-2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1697.  Gene #157: 'NKX2-2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
NKX2-2 MUTATED 3 2 1
NKX2-2 WILD-TYPE 219 182 102
'NKX2-2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 0.5

Table S1698.  Gene #157: 'NKX2-2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
NKX2-2 MUTATED 0 2 4
NKX2-2 WILD-TYPE 184 160 155
'NKX2-2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S1699.  Gene #157: 'NKX2-2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
NKX2-2 MUTATED 1 2 3 0
NKX2-2 WILD-TYPE 89 136 185 89
'SEZ6L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S1700.  Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
SEZ6L2 MUTATED 2 0 1 1
SEZ6L2 WILD-TYPE 67 43 73 53
'SEZ6L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S1701.  Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
SEZ6L2 MUTATED 1 0 0 3
SEZ6L2 WILD-TYPE 62 50 48 76
'SEZ6L2 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.63

Table S1702.  Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
SEZ6L2 MUTATED 3 0 1 0
SEZ6L2 WILD-TYPE 74 93 44 60
'SEZ6L2 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.69

Table S1703.  Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
SEZ6L2 MUTATED 1 0 3
SEZ6L2 WILD-TYPE 137 61 73
'SEZ6L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1704.  Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
SEZ6L2 MUTATED 4 3 0
SEZ6L2 WILD-TYPE 291 478 7
'SEZ6L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S1705.  Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
SEZ6L2 MUTATED 1 1 0 2
SEZ6L2 WILD-TYPE 159 231 64 164
'SEZ6L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.18

Table S1706.  Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
SEZ6L2 MUTATED 0 4 0
SEZ6L2 WILD-TYPE 195 182 189

Figure S266.  Get High-res Image Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

'SEZ6L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0041 (Fisher's exact test), Q value = 0.083

Table S1707.  Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
SEZ6L2 MUTATED 0 0 4
SEZ6L2 WILD-TYPE 204 219 143

Figure S267.  Get High-res Image Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

'SEZ6L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.81

Table S1708.  Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
SEZ6L2 MUTATED 2 0 3
SEZ6L2 WILD-TYPE 225 235 189
'SEZ6L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1709.  Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
SEZ6L2 MUTATED 2 1 2
SEZ6L2 WILD-TYPE 194 189 266
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.95

Table S1710.  Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
SEZ6L2 MUTATED 0 0 3 0
SEZ6L2 WILD-TYPE 136 107 180 83
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0984 (Fisher's exact test), Q value = 0.62

Table S1711.  Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
SEZ6L2 MUTATED 0 3 0
SEZ6L2 WILD-TYPE 222 181 103
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.31

Table S1712.  Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
SEZ6L2 MUTATED 0 0 3
SEZ6L2 WILD-TYPE 184 162 156

Figure S268.  Get High-res Image Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.99

Table S1713.  Gene #158: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
SEZ6L2 MUTATED 0 0 3 0
SEZ6L2 WILD-TYPE 90 138 185 89
'MYH8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1714.  Gene #159: 'MYH8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
MYH8 MUTATED 2 0 2 1
MYH8 WILD-TYPE 67 43 72 53
'MYH8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S1715.  Gene #159: 'MYH8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
MYH8 MUTATED 1 1 2 1
MYH8 WILD-TYPE 62 49 46 78
'MYH8 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.98

Table S1716.  Gene #159: 'MYH8 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
MYH8 MUTATED 3 1 0 3
MYH8 WILD-TYPE 74 92 45 57
'MYH8 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.0846 (Fisher's exact test), Q value = 0.57

Table S1717.  Gene #159: 'MYH8 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
MYH8 MUTATED 1 3 3
MYH8 WILD-TYPE 137 58 73
'MYH8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S1718.  Gene #159: 'MYH8 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
MYH8 MUTATED 10 11 0
MYH8 WILD-TYPE 285 470 7
'MYH8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.85

Table S1719.  Gene #159: 'MYH8 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
MYH8 MUTATED 8 7 0 3
MYH8 WILD-TYPE 152 225 64 163
'MYH8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.98

Table S1720.  Gene #159: 'MYH8 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
MYH8 MUTATED 7 2 5
MYH8 WILD-TYPE 188 184 184
'MYH8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.89

Table S1721.  Gene #159: 'MYH8 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
MYH8 MUTATED 7 6 1
MYH8 WILD-TYPE 197 213 146
'MYH8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.95

Table S1722.  Gene #159: 'MYH8 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
MYH8 MUTATED 8 3 6
MYH8 WILD-TYPE 219 232 186
'MYH8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S1723.  Gene #159: 'MYH8 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
MYH8 MUTATED 5 7 5
MYH8 WILD-TYPE 191 183 263
'MYH8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1724.  Gene #159: 'MYH8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
MYH8 MUTATED 4 4 4 2
MYH8 WILD-TYPE 132 103 179 81
'MYH8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.94

Table S1725.  Gene #159: 'MYH8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
MYH8 MUTATED 6 3 5
MYH8 WILD-TYPE 216 181 98
'MYH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S1726.  Gene #159: 'MYH8 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
MYH8 MUTATED 4 5 5
MYH8 WILD-TYPE 180 157 154
'MYH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S1727.  Gene #159: 'MYH8 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
MYH8 MUTATED 2 3 5 4
MYH8 WILD-TYPE 88 135 183 85
'CYP11A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1728.  Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
CYP11A1 MUTATED 1 0 2 0
CYP11A1 WILD-TYPE 68 43 72 54
'CYP11A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S1729.  Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
CYP11A1 MUTATED 1 0 1 1
CYP11A1 WILD-TYPE 62 50 47 78
'CYP11A1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S1730.  Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
CYP11A1 MUTATED 1 2 0 0
CYP11A1 WILD-TYPE 76 91 45 60
'CYP11A1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.98

Table S1731.  Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
CYP11A1 MUTATED 1 0 2
CYP11A1 WILD-TYPE 137 61 74
'CYP11A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1732.  Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
CYP11A1 MUTATED 3 4 0
CYP11A1 WILD-TYPE 292 477 7
'CYP11A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1733.  Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
CYP11A1 MUTATED 1 1 1 2
CYP11A1 WILD-TYPE 159 231 63 164
'CYP11A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1734.  Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
CYP11A1 MUTATED 2 1 2
CYP11A1 WILD-TYPE 193 185 187
'CYP11A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S1735.  Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
CYP11A1 MUTATED 2 3 0
CYP11A1 WILD-TYPE 202 216 147
'CYP11A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0414 (Fisher's exact test), Q value = 0.39

Table S1736.  Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
CYP11A1 MUTATED 5 0 2
CYP11A1 WILD-TYPE 222 235 190

Figure S269.  Get High-res Image Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'CYP11A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1737.  Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
CYP11A1 MUTATED 4 1 2
CYP11A1 WILD-TYPE 192 189 266
'CYP11A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S1738.  Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
CYP11A1 MUTATED 1 1 1 1
CYP11A1 WILD-TYPE 135 106 182 82
'CYP11A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S1739.  Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
CYP11A1 MUTATED 1 2 1
CYP11A1 WILD-TYPE 221 182 102
'CYP11A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1740.  Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
CYP11A1 MUTATED 1 2 1
CYP11A1 WILD-TYPE 183 160 158
'CYP11A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.91

Table S1741.  Gene #160: 'CYP11A1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
CYP11A1 MUTATED 0 0 2 2
CYP11A1 WILD-TYPE 90 138 186 87
'TJAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1742.  Gene #161: 'TJAP1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TJAP1 MUTATED 2 1 0
TJAP1 WILD-TYPE 293 480 7
'TJAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 0.41

Table S1743.  Gene #161: 'TJAP1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TJAP1 MUTATED 3 0 0 0
TJAP1 WILD-TYPE 157 232 64 166

Figure S270.  Get High-res Image Gene #161: 'TJAP1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'PRKCD MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.81

Table S1744.  Gene #162: 'PRKCD MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
PRKCD MUTATED 0 2 1 0
PRKCD WILD-TYPE 69 41 73 54
'PRKCD MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0822 (Fisher's exact test), Q value = 0.56

Table S1745.  Gene #162: 'PRKCD MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
PRKCD MUTATED 0 2 1 0
PRKCD WILD-TYPE 63 48 47 79
'PRKCD MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.81

Table S1746.  Gene #162: 'PRKCD MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
PRKCD MUTATED 0 3 0 0
PRKCD WILD-TYPE 77 90 45 60
'PRKCD MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1747.  Gene #162: 'PRKCD MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
PRKCD MUTATED 2 0 1
PRKCD WILD-TYPE 136 61 75
'PRKCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00418 (Fisher's exact test), Q value = 0.083

Table S1748.  Gene #162: 'PRKCD MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PRKCD MUTATED 2 0 1
PRKCD WILD-TYPE 293 481 6

Figure S271.  Get High-res Image Gene #162: 'PRKCD MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'FLNB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1749.  Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
FLNB MUTATED 2 0 0 1
FLNB WILD-TYPE 67 43 74 53
'FLNB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S1750.  Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
FLNB MUTATED 2 1 0 0
FLNB WILD-TYPE 61 49 48 79
'FLNB MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.85

Table S1751.  Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
FLNB MUTATED 2 0 1 0
FLNB WILD-TYPE 75 93 44 60
'FLNB MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S1752.  Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
FLNB MUTATED 2 1 0
FLNB WILD-TYPE 136 60 76
'FLNB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.28

Table S1753.  Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
FLNB MUTATED 1 7 1
FLNB WILD-TYPE 294 474 6

Figure S272.  Get High-res Image Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

'FLNB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1754.  Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
FLNB MUTATED 1 3 1 2
FLNB WILD-TYPE 159 229 63 164
'FLNB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S1755.  Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
FLNB MUTATED 2 3 2
FLNB WILD-TYPE 193 183 187
'FLNB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S1756.  Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
FLNB MUTATED 2 4 1
FLNB WILD-TYPE 202 215 146
'FLNB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S1757.  Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
FLNB MUTATED 4 3 2
FLNB WILD-TYPE 223 232 190
'FLNB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1758.  Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
FLNB MUTATED 3 4 2
FLNB WILD-TYPE 193 186 266
'FLNB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S1759.  Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
FLNB MUTATED 2 3 2 0
FLNB WILD-TYPE 134 104 181 83
'FLNB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S1760.  Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
FLNB MUTATED 3 2 2
FLNB WILD-TYPE 219 182 101
'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1761.  Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
FLNB MUTATED 3 1 3
FLNB WILD-TYPE 181 161 156
'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S1762.  Gene #163: 'FLNB MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
FLNB MUTATED 0 2 4 1
FLNB WILD-TYPE 90 136 184 88
'PAN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S1763.  Gene #164: 'PAN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
PAN3 MUTATED 3 0 1 1
PAN3 WILD-TYPE 66 43 73 53
'PAN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.98

Table S1764.  Gene #164: 'PAN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
PAN3 MUTATED 2 2 1 0
PAN3 WILD-TYPE 61 48 47 79
'PAN3 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S1765.  Gene #164: 'PAN3 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
PAN3 MUTATED 2 3 1 0
PAN3 WILD-TYPE 75 90 44 60
'PAN3 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1766.  Gene #164: 'PAN3 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
PAN3 MUTATED 2 2 2
PAN3 WILD-TYPE 136 59 74
'PAN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S1767.  Gene #164: 'PAN3 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
PAN3 MUTATED 4 3 0
PAN3 WILD-TYPE 291 478 7
'PAN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1768.  Gene #164: 'PAN3 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
PAN3 MUTATED 1 1 1
PAN3 WILD-TYPE 194 185 188
'PAN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S1769.  Gene #164: 'PAN3 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
PAN3 MUTATED 2 0 1
PAN3 WILD-TYPE 202 219 146
'PAN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S1770.  Gene #164: 'PAN3 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
PAN3 MUTATED 2 0 1
PAN3 WILD-TYPE 225 235 191
'PAN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S1771.  Gene #164: 'PAN3 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
PAN3 MUTATED 2 0 1
PAN3 WILD-TYPE 194 190 267
'CHD8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S1772.  Gene #165: 'CHD8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
CHD8 MUTATED 3 2 1 2
CHD8 WILD-TYPE 66 41 73 52
'CHD8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S1773.  Gene #165: 'CHD8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
CHD8 MUTATED 2 2 0 4
CHD8 WILD-TYPE 61 48 48 75
'CHD8 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.73

Table S1774.  Gene #165: 'CHD8 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
CHD8 MUTATED 0 3 3 2
CHD8 WILD-TYPE 77 90 42 58
'CHD8 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S1775.  Gene #165: 'CHD8 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
CHD8 MUTATED 5 2 1
CHD8 WILD-TYPE 133 59 75
'CHD8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.85

Table S1776.  Gene #165: 'CHD8 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
CHD8 MUTATED 7 4 0
CHD8 WILD-TYPE 288 477 7
'CHD8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0504 (Fisher's exact test), Q value = 0.43

Table S1777.  Gene #165: 'CHD8 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
CHD8 MUTATED 5 1 2 1
CHD8 WILD-TYPE 155 231 62 165
'CHD8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.97

Table S1778.  Gene #165: 'CHD8 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
CHD8 MUTATED 5 4 1
CHD8 WILD-TYPE 190 182 188
'CHD8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S1779.  Gene #165: 'CHD8 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
CHD8 MUTATED 2 4 4
CHD8 WILD-TYPE 202 215 143
'CHD8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.22

Table S1780.  Gene #165: 'CHD8 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
CHD8 MUTATED 6 0 2
CHD8 WILD-TYPE 221 235 190

Figure S273.  Get High-res Image Gene #165: 'CHD8 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'CHD8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.24

Table S1781.  Gene #165: 'CHD8 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
CHD8 MUTATED 6 0 2
CHD8 WILD-TYPE 190 190 266

Figure S274.  Get High-res Image Gene #165: 'CHD8 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'TTYH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1782.  Gene #166: 'TTYH3 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
TTYH3 MUTATED 1 3 0
TTYH3 WILD-TYPE 294 478 7
'TTYH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S1783.  Gene #166: 'TTYH3 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
TTYH3 MUTATED 1 1 1 1
TTYH3 WILD-TYPE 159 231 63 165
'TTYH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S1784.  Gene #166: 'TTYH3 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
TTYH3 MUTATED 2 0 1
TTYH3 WILD-TYPE 193 186 188
'TTYH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S1785.  Gene #166: 'TTYH3 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
TTYH3 MUTATED 1 2 0
TTYH3 WILD-TYPE 203 217 147
'TTYH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1786.  Gene #166: 'TTYH3 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
TTYH3 MUTATED 0 2 1
TTYH3 WILD-TYPE 227 233 191
'TTYH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S1787.  Gene #166: 'TTYH3 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
TTYH3 MUTATED 0 1 2
TTYH3 WILD-TYPE 196 189 266
'TTYH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S1788.  Gene #166: 'TTYH3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
TTYH3 MUTATED 1 0 1 1
TTYH3 WILD-TYPE 135 107 182 82
'TTYH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1789.  Gene #166: 'TTYH3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
TTYH3 MUTATED 2 1 0
TTYH3 WILD-TYPE 220 183 103
'TTYH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1790.  Gene #166: 'TTYH3 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
TTYH3 MUTATED 2 0 1
TTYH3 WILD-TYPE 182 162 158
'TTYH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1791.  Gene #166: 'TTYH3 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
TTYH3 MUTATED 0 1 2 0
TTYH3 WILD-TYPE 90 137 186 89
'SLFN11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S1792.  Gene #167: 'SLFN11 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
SLFN11 MUTATED 1 4 0
SLFN11 WILD-TYPE 294 477 7
'SLFN11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1793.  Gene #167: 'SLFN11 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
SLFN11 MUTATED 1 2 0 1
SLFN11 WILD-TYPE 159 230 64 165
'SLFN11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.97

Table S1794.  Gene #167: 'SLFN11 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
SLFN11 MUTATED 3 2 0
SLFN11 WILD-TYPE 192 184 189
'SLFN11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S1795.  Gene #167: 'SLFN11 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
SLFN11 MUTATED 2 1 2
SLFN11 WILD-TYPE 202 218 145
'SLFN11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1796.  Gene #167: 'SLFN11 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
SLFN11 MUTATED 1 1 2
SLFN11 WILD-TYPE 226 234 190
'SLFN11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S1797.  Gene #167: 'SLFN11 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
SLFN11 MUTATED 0 2 2
SLFN11 WILD-TYPE 196 188 266
'SLFN11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1798.  Gene #167: 'SLFN11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
SLFN11 MUTATED 1 2 1 0
SLFN11 WILD-TYPE 135 105 182 83
'SLFN11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.95

Table S1799.  Gene #167: 'SLFN11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
SLFN11 MUTATED 3 0 1
SLFN11 WILD-TYPE 219 184 102
'SLFN11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S1800.  Gene #167: 'SLFN11 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
SLFN11 MUTATED 2 0 2
SLFN11 WILD-TYPE 182 162 157
'SLFN11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1801.  Gene #167: 'SLFN11 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
SLFN11 MUTATED 0 2 2 0
SLFN11 WILD-TYPE 90 136 186 89
'CIB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1802.  Gene #168: 'CIB1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
CIB1 MUTATED 1 4 0
CIB1 WILD-TYPE 294 477 7
'CIB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1803.  Gene #168: 'CIB1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
CIB1 MUTATED 1 2 0 2
CIB1 WILD-TYPE 159 230 64 164
'CIB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1804.  Gene #168: 'CIB1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
CIB1 MUTATED 2 1 2
CIB1 WILD-TYPE 193 185 187
'CIB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.43

Table S1805.  Gene #168: 'CIB1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
CIB1 MUTATED 4 0 1
CIB1 WILD-TYPE 200 219 146
'CIB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1806.  Gene #168: 'CIB1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
CIB1 MUTATED 1 1 2
CIB1 WILD-TYPE 226 234 190
'CIB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.98

Table S1807.  Gene #168: 'CIB1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
CIB1 MUTATED 0 1 3
CIB1 WILD-TYPE 196 189 265
'CIB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.87

Table S1808.  Gene #168: 'CIB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
CIB1 MUTATED 0 1 1 2
CIB1 WILD-TYPE 136 106 182 81
'CIB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0433 (Fisher's exact test), Q value = 0.4

Table S1809.  Gene #168: 'CIB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
CIB1 MUTATED 0 4 0
CIB1 WILD-TYPE 222 180 103

Figure S275.  Get High-res Image Gene #168: 'CIB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'CIB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.67

Table S1810.  Gene #168: 'CIB1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
CIB1 MUTATED 0 3 1
CIB1 WILD-TYPE 184 159 158
'CIB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.99

Table S1811.  Gene #168: 'CIB1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
CIB1 MUTATED 0 3 1 0
CIB1 WILD-TYPE 90 135 187 89
'GLYAT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1812.  Gene #169: 'GLYAT MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
GLYAT MUTATED 1 4 0
GLYAT WILD-TYPE 294 477 7
'GLYAT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S1813.  Gene #169: 'GLYAT MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
GLYAT MUTATED 2 2 0 1
GLYAT WILD-TYPE 158 230 64 165
'GLYAT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1814.  Gene #169: 'GLYAT MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
GLYAT MUTATED 2 0 2
GLYAT WILD-TYPE 193 186 187
'GLYAT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1815.  Gene #169: 'GLYAT MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
GLYAT MUTATED 2 2 0
GLYAT WILD-TYPE 202 217 147
'GLYAT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S1816.  Gene #169: 'GLYAT MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
GLYAT MUTATED 2 3 0
GLYAT WILD-TYPE 225 232 192
'GLYAT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1817.  Gene #169: 'GLYAT MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
GLYAT MUTATED 1 3 1
GLYAT WILD-TYPE 195 187 267
'GLYAT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.85

Table S1818.  Gene #169: 'GLYAT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
GLYAT MUTATED 1 2 0 1
GLYAT WILD-TYPE 135 105 183 82
'GLYAT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.95

Table S1819.  Gene #169: 'GLYAT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
GLYAT MUTATED 3 0 1
GLYAT WILD-TYPE 219 184 102
'GLYAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S1820.  Gene #169: 'GLYAT MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
GLYAT MUTATED 1 2 1
GLYAT WILD-TYPE 183 160 158
'GLYAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S1821.  Gene #169: 'GLYAT MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
GLYAT MUTATED 1 2 1 0
GLYAT WILD-TYPE 89 136 187 89
'IGFN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1822.  Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
IGFN1 MUTATED 1 1 1 1
IGFN1 WILD-TYPE 68 42 73 53
'IGFN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1823.  Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
IGFN1 MUTATED 1 1 1 1
IGFN1 WILD-TYPE 62 49 47 78
'IGFN1 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S1824.  Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
IGFN1 MUTATED 2 1 1 2
IGFN1 WILD-TYPE 75 92 44 58
'IGFN1 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S1825.  Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
IGFN1 MUTATED 4 0 2
IGFN1 WILD-TYPE 134 61 74
'IGFN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.69

Table S1826.  Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
IGFN1 MUTATED 6 2 0
IGFN1 WILD-TYPE 289 479 7
'IGFN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00086 (Fisher's exact test), Q value = 0.023

Table S1827.  Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
IGFN1 MUTATED 6 0 0 0
IGFN1 WILD-TYPE 154 232 64 166

Figure S276.  Get High-res Image Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'IGFN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S1828.  Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
IGFN1 MUTATED 2 2 1
IGFN1 WILD-TYPE 193 184 188
'IGFN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1829.  Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
IGFN1 MUTATED 2 1 2
IGFN1 WILD-TYPE 202 218 145
'IGFN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.26

Table S1830.  Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
IGFN1 MUTATED 5 0 1
IGFN1 WILD-TYPE 222 235 191

Figure S277.  Get High-res Image Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'IGFN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.85

Table S1831.  Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
IGFN1 MUTATED 4 1 1
IGFN1 WILD-TYPE 192 189 267
'IGFN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1832.  Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
IGFN1 MUTATED 1 1 1 0
IGFN1 WILD-TYPE 135 106 182 83
'IGFN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00813 (Fisher's exact test), Q value = 0.14

Table S1833.  Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
IGFN1 MUTATED 0 0 3
IGFN1 WILD-TYPE 222 184 100

Figure S278.  Get High-res Image Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'IGFN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S1834.  Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
IGFN1 MUTATED 1 0 2
IGFN1 WILD-TYPE 183 162 157
'IGFN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.77

Table S1835.  Gene #170: 'IGFN1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
IGFN1 MUTATED 0 0 1 2
IGFN1 WILD-TYPE 90 138 187 87
'LRRC55 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S1836.  Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
LRRC55 MUTATED 0 1 3 1
LRRC55 WILD-TYPE 69 42 71 53
'LRRC55 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S1837.  Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
LRRC55 MUTATED 0 1 1 3
LRRC55 WILD-TYPE 63 49 47 76
'LRRC55 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S1838.  Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
LRRC55 MUTATED 3 3 0 0
LRRC55 WILD-TYPE 74 90 45 60
'LRRC55 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1839.  Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
LRRC55 MUTATED 4 1 1
LRRC55 WILD-TYPE 134 60 75
'LRRC55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.8

Table S1840.  Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
LRRC55 MUTATED 6 3 0
LRRC55 WILD-TYPE 289 478 7
'LRRC55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.93

Table S1841.  Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
LRRC55 MUTATED 3 2 0 0
LRRC55 WILD-TYPE 157 230 64 166
'LRRC55 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1842.  Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
LRRC55 MUTATED 2 1 2
LRRC55 WILD-TYPE 193 185 187
'LRRC55 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S1843.  Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
LRRC55 MUTATED 3 1 1
LRRC55 WILD-TYPE 201 218 146
'LRRC55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S1844.  Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
LRRC55 MUTATED 2 1 1
LRRC55 WILD-TYPE 225 234 191
'LRRC55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S1845.  Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
LRRC55 MUTATED 1 2 1
LRRC55 WILD-TYPE 195 188 267
'LRRC55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.19

Table S1846.  Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
LRRC55 MUTATED 0 3 0 0
LRRC55 WILD-TYPE 136 104 183 83

Figure S279.  Get High-res Image Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

'LRRC55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1847.  Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
LRRC55 MUTATED 1 1 1
LRRC55 WILD-TYPE 221 183 102
'LRRC55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.86

Table S1848.  Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
LRRC55 MUTATED 0 1 2
LRRC55 WILD-TYPE 184 161 157
'LRRC55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1849.  Gene #171: 'LRRC55 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
LRRC55 MUTATED 0 1 2 0
LRRC55 WILD-TYPE 90 137 186 89
'WDR63 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.6

Table S1850.  Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 69 43 74 54
WDR63 MUTATED 2 2 0 0
WDR63 WILD-TYPE 67 41 74 54
'WDR63 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1851.  Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 63 50 48 79
WDR63 MUTATED 1 2 0 1
WDR63 WILD-TYPE 62 48 48 78
'WDR63 MUTATION STATUS' versus 'MIR_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S1852.  Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #3: 'MIR_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 93 45 60
WDR63 MUTATED 2 2 1 0
WDR63 WILD-TYPE 75 91 44 60
'WDR63 MUTATION STATUS' versus 'MIR_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.74

Table S1853.  Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #4: 'MIR_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 138 61 76
WDR63 MUTATED 5 0 0
WDR63 WILD-TYPE 133 61 76
'WDR63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.81

Table S1854.  Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
WDR63 MUTATED 6 3 0
WDR63 WILD-TYPE 289 478 7
'WDR63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 0.51

Table S1855.  Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
WDR63 MUTATED 4 1 0 0
WDR63 WILD-TYPE 156 231 64 166
'WDR63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S1856.  Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
WDR63 MUTATED 3 1 2
WDR63 WILD-TYPE 192 185 187
'WDR63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.97

Table S1857.  Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
WDR63 MUTATED 4 1 1
WDR63 WILD-TYPE 200 218 146
'WDR63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.18

Table S1858.  Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
WDR63 MUTATED 6 1 0
WDR63 WILD-TYPE 221 234 192

Figure S280.  Get High-res Image Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

'WDR63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 0.31

Table S1859.  Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
WDR63 MUTATED 4 3 0
WDR63 WILD-TYPE 192 187 268

Figure S281.  Get High-res Image Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

'WDR63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S1860.  Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
WDR63 MUTATED 1 1 1 1
WDR63 WILD-TYPE 135 106 182 82
'WDR63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0268 (Fisher's exact test), Q value = 0.29

Table S1861.  Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
WDR63 MUTATED 1 0 3
WDR63 WILD-TYPE 221 184 100

Figure S282.  Get High-res Image Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'WDR63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1862.  Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
WDR63 MUTATED 2 1 1
WDR63 WILD-TYPE 182 161 158
'WDR63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S1863.  Gene #172: 'WDR63 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
WDR63 MUTATED 0 1 1 2
WDR63 WILD-TYPE 90 137 187 87
'KIF26B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S1864.  Gene #173: 'KIF26B MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
KIF26B MUTATED 3 3 0
KIF26B WILD-TYPE 292 478 7
'KIF26B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.19

Table S1865.  Gene #173: 'KIF26B MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
KIF26B MUTATED 5 0 0 1
KIF26B WILD-TYPE 155 232 64 165

Figure S283.  Get High-res Image Gene #173: 'KIF26B MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

'KIF26B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S1866.  Gene #173: 'KIF26B MUTATION STATUS' versus Molecular Subtype #7: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 195 186 189
KIF26B MUTATED 2 2 1
KIF26B WILD-TYPE 193 184 188
'KIF26B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1867.  Gene #173: 'KIF26B MUTATION STATUS' versus Molecular Subtype #8: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 204 219 147
KIF26B MUTATED 3 1 1
KIF26B WILD-TYPE 201 218 146
'KIF26B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.69

Table S1868.  Gene #173: 'KIF26B MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
KIF26B MUTATED 3 0 3
KIF26B WILD-TYPE 224 235 189
'KIF26B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S1869.  Gene #173: 'KIF26B MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
KIF26B MUTATED 2 1 3
KIF26B WILD-TYPE 194 189 265
'KIF26B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1870.  Gene #173: 'KIF26B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
KIF26B MUTATED 1 1 2 1
KIF26B WILD-TYPE 135 106 181 82
'KIF26B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0034 (Fisher's exact test), Q value = 0.072

Table S1871.  Gene #173: 'KIF26B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
KIF26B MUTATED 0 1 4
KIF26B WILD-TYPE 222 183 99

Figure S284.  Get High-res Image Gene #173: 'KIF26B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

'KIF26B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1872.  Gene #173: 'KIF26B MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
KIF26B MUTATED 1 1 3
KIF26B WILD-TYPE 183 161 156
'KIF26B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0847 (Fisher's exact test), Q value = 0.57

Table S1873.  Gene #173: 'KIF26B MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
KIF26B MUTATED 0 0 2 3
KIF26B WILD-TYPE 90 138 186 86
'AGXT2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1874.  Gene #174: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #5: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 295 481 7
AGXT2L1 MUTATED 2 2 0
AGXT2L1 WILD-TYPE 293 479 7
'AGXT2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.97

Table S1875.  Gene #174: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #6: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 160 232 64 166
AGXT2L1 MUTATED 2 0 0 1
AGXT2L1 WILD-TYPE 158 232 64 165
'AGXT2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.79

Table S1876.  Gene #174: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 227 235 192
AGXT2L1 MUTATED 3 0 1
AGXT2L1 WILD-TYPE 224 235 191
'AGXT2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1877.  Gene #174: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 196 190 268
AGXT2L1 MUTATED 2 1 1
AGXT2L1 WILD-TYPE 194 189 267
'AGXT2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1878.  Gene #174: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 136 107 183 83
AGXT2L1 MUTATED 1 1 1 0
AGXT2L1 WILD-TYPE 135 106 182 83
'AGXT2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S1879.  Gene #174: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 222 184 103
AGXT2L1 MUTATED 1 1 1
AGXT2L1 WILD-TYPE 221 183 102
'AGXT2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S1880.  Gene #174: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #13: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 184 162 159
AGXT2L1 MUTATED 1 0 2
AGXT2L1 WILD-TYPE 183 162 157
'AGXT2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S1881.  Gene #174: 'AGXT2L1 MUTATION STATUS' versus Molecular Subtype #14: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 90 138 188 89
AGXT2L1 MUTATED 1 0 2 0
AGXT2L1 WILD-TYPE 89 138 186 89
Methods & Data
Input

  • Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline

  • Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBMLGG-TP/20223848/transformed.cor.cli.txt

  • Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBMLGG-TP/20148947/GBMLGG-TP.transferedmergedcluster.txt

  • Number of patients = 796

  • Number of significantly mutated genes = 174

  • Number of Molecular subtypes = 14

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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