PARADIGM pathway analysis of mRNASeq expression data
Head and Neck Squamous Cell Carcinoma (Primary solid tumor)
21 August 2015  |  analyses__2015_08_21
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2015): PARADIGM pathway analysis of mRNASeq expression data. Broad Institute of MIT and Harvard. doi:10.7908/C1V40TDH
- Overview
+ Introduction
- Summary

There were 38 significant pathways identified in this analysis.

Table 1.  Get Full Table Top 10 out of 131 pathways in order of significance.

Pathway.Name Avg.Num.Perturbations
TCGA08_retinoblastoma 234
Syndecan-1-mediated signaling events 201
IL4-mediated signaling events 140
Syndecan-4-mediated signaling events 138
Osteopontin-mediated events 108
HIF-1-alpha transcription factor network 108
Glypican 2 network 89
amb2 Integrin signaling 75
IL23-mediated signaling events 75
Syndecan-2-mediated signaling events 70
- Results
+ Summary Table
+ Inferred Pathway Levels Matrix
+ Methods & Data