This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 74 arm-level events and 10 molecular subtypes across 288 patients, 376 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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2q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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3p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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5q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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6p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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7p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p gain cnv correlated to 'METHLYATION_CNMF'.
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8q gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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9p gain cnv correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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10q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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11p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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11q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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12p gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CNMF'.
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12q gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CNMF'.
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14q gain cnv correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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16p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p gain cnv correlated to 'CN_CNMF'.
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18q gain cnv correlated to 'CN_CNMF'.
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19p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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19q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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22q gain cnv correlated to 'CN_CNMF'.
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xp gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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1q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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2p loss cnv correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CNMF'.
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2q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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3p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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4p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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6q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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8p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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8q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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9p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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13q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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14q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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21q loss cnv correlated to 'CN_CNMF'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xp loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 74 arm-level events and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 376 significant findings detected.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
7p gain | 172 (60%) | 116 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.00646 (0.0182) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.0425 (0.087) |
0.00016 (0.000805) |
0.00015 (0.000766) |
1e-05 (7.25e-05) |
17p gain | 174 (60%) | 114 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
6e-05 (0.000347) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.00283 (0.00965) |
0.00031 (0.00142) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
17q gain | 191 (66%) | 97 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.00089 (0.00364) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.032 (0.0699) |
0.00118 (0.00457) |
0.00031 (0.00142) |
2e-05 (0.000135) |
7q gain | 173 (60%) | 115 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.0118 (0.0302) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.0575 (0.109) |
0.00019 (0.000937) |
0.00028 (0.00134) |
1e-05 (7.25e-05) |
16p gain | 153 (53%) | 135 |
1e-05 (7.25e-05) |
0.0122 (0.0306) |
0.911 (0.963) |
0.00064 (0.00274) |
1e-05 (7.25e-05) |
3e-05 (0.000195) |
0.00106 (0.00423) |
2e-05 (0.000135) |
0.00834 (0.0224) |
2e-05 (0.000135) |
16q gain | 148 (51%) | 140 |
1e-05 (7.25e-05) |
0.00626 (0.0179) |
0.953 (0.992) |
0.00194 (0.00707) |
1e-05 (7.25e-05) |
0.0001 (0.000544) |
5e-05 (0.000301) |
1e-05 (7.25e-05) |
0.00218 (0.00775) |
1e-05 (7.25e-05) |
xp gain | 87 (30%) | 201 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.16 (0.256) |
0.00296 (0.00991) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.00978 (0.0258) |
6e-05 (0.000347) |
0.0019 (0.00696) |
0.0039 (0.0123) |
xq gain | 91 (32%) | 197 |
1e-05 (7.25e-05) |
2e-05 (0.000135) |
0.158 (0.253) |
0.00998 (0.0261) |
1e-05 (7.25e-05) |
3e-05 (0.000195) |
0.0116 (0.0298) |
0.00034 (0.00153) |
0.00953 (0.0253) |
0.0174 (0.0416) |
18p loss | 42 (15%) | 246 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.00231 (0.00806) |
0.00535 (0.0157) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.104 (0.178) |
0.00107 (0.00423) |
0.0195 (0.0455) |
0.00039 (0.00172) |
18q loss | 45 (16%) | 243 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.00478 (0.0144) |
0.0001 (0.000544) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.0527 (0.102) |
0.00038 (0.00168) |
0.00686 (0.0191) |
0.00013 (0.000673) |
1q gain | 17 (6%) | 271 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.604 (0.707) |
0.0491 (0.0968) |
6e-05 (0.000347) |
9e-05 (0.000497) |
0.341 (0.457) |
0.00943 (0.0251) |
0.00648 (0.0182) |
0.00049 (0.00213) |
3q gain | 94 (33%) | 194 |
1e-05 (7.25e-05) |
0.00469 (0.0142) |
0.263 (0.372) |
0.00429 (0.0133) |
1e-05 (7.25e-05) |
0.00356 (0.0115) |
0.0151 (0.0368) |
0.00074 (0.00311) |
0.508 (0.622) |
0.00448 (0.0139) |
20p gain | 99 (34%) | 189 |
3e-05 (0.000195) |
0.02 (0.0462) |
0.0252 (0.0565) |
0.00223 (0.00786) |
0.00452 (0.0139) |
0.0223 (0.0507) |
0.0328 (0.0706) |
0.00309 (0.0102) |
0.186 (0.286) |
0.0934 (0.164) |
9p loss | 33 (11%) | 255 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.337 (0.454) |
0.0159 (0.0385) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.00453 (0.0139) |
0.142 (0.231) |
0.00543 (0.0159) |
0.00141 (0.00543) |
9q loss | 34 (12%) | 254 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.0568 (0.108) |
0.0046 (0.0141) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.00295 (0.00991) |
0.0654 (0.123) |
0.00107 (0.00423) |
0.0002 (0.000974) |
13q loss | 24 (8%) | 264 |
1e-05 (7.25e-05) |
5e-05 (0.000301) |
0.478 (0.592) |
0.00117 (0.00456) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.0535 (0.104) |
0.011 (0.0284) |
0.00409 (0.0128) |
5e-05 (0.000301) |
14q loss | 47 (16%) | 241 |
1e-05 (7.25e-05) |
0.00011 (0.000586) |
0.00558 (0.0162) |
0.00011 (0.000586) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.213 (0.316) |
0.861 (0.928) |
0.00391 (0.0123) |
0.00306 (0.0102) |
3p gain | 74 (26%) | 214 |
1e-05 (7.25e-05) |
0.0017 (0.00632) |
0.21 (0.313) |
0.00011 (0.000586) |
1e-05 (7.25e-05) |
0.0019 (0.00696) |
0.0732 (0.134) |
0.00086 (0.00354) |
0.0867 (0.155) |
0.00095 (0.00384) |
20q gain | 101 (35%) | 187 |
0.00015 (0.000766) |
0.0211 (0.0484) |
0.0723 (0.133) |
0.00794 (0.0215) |
0.0106 (0.0276) |
0.0496 (0.0975) |
0.044 (0.0892) |
0.00503 (0.0149) |
0.341 (0.457) |
0.0549 (0.106) |
4p loss | 25 (9%) | 263 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.206 (0.309) |
0.00084 (0.00347) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.149 (0.241) |
0.0693 (0.129) |
0.0058 (0.0167) |
1e-05 (7.25e-05) |
4q loss | 26 (9%) | 262 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.478 (0.592) |
0.00361 (0.0116) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.262 (0.372) |
0.2 (0.303) |
0.00724 (0.0199) |
5e-05 (0.000301) |
5p loss | 8 (3%) | 280 |
0.17 (0.266) |
0.0485 (0.0965) |
0.58 (0.687) |
0.0769 (0.14) |
0.0298 (0.0657) |
0.00032 (0.00145) |
0.0391 (0.0817) |
0.0234 (0.0527) |
0.0122 (0.0307) |
6e-05 (0.000347) |
5q loss | 8 (3%) | 280 |
0.17 (0.266) |
0.0486 (0.0965) |
0.581 (0.687) |
0.0744 (0.136) |
0.0288 (0.064) |
0.00031 (0.00142) |
0.0393 (0.0819) |
0.0234 (0.0527) |
0.0119 (0.0303) |
1e-05 (7.25e-05) |
10q loss | 17 (6%) | 271 |
1e-05 (7.25e-05) |
0.00013 (0.000673) |
0.717 (0.81) |
0.0472 (0.0941) |
0.00013 (0.000673) |
0.00207 (0.00751) |
0.174 (0.271) |
0.663 (0.763) |
0.00154 (0.00587) |
0.00698 (0.0193) |
xp loss | 34 (12%) | 254 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.226 (0.329) |
0.00321 (0.0105) |
1e-05 (7.25e-05) |
7e-05 (0.000398) |
0.178 (0.277) |
0.357 (0.474) |
0.0179 (0.0424) |
0.00077 (0.00322) |
1p gain | 9 (3%) | 279 |
4e-05 (0.000255) |
2e-05 (0.000135) |
0.0706 (0.131) |
0.0286 (0.0638) |
0.00352 (0.0114) |
0.0033 (0.0108) |
0.481 (0.594) |
0.105 (0.178) |
0.0539 (0.104) |
0.00591 (0.017) |
3p loss | 22 (8%) | 266 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.159 (0.254) |
0.0319 (0.0699) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.273 (0.385) |
0.0944 (0.164) |
0.0524 (0.102) |
0.00094 (0.00382) |
6p loss | 21 (7%) | 267 |
1e-05 (7.25e-05) |
0.0444 (0.0892) |
0.946 (0.989) |
0.0414 (0.0851) |
0.00635 (0.018) |
0.00019 (0.000937) |
0.0189 (0.0442) |
0.261 (0.372) |
0.448 (0.564) |
0.0974 (0.169) |
10p loss | 16 (6%) | 272 |
1e-05 (7.25e-05) |
5e-05 (0.000301) |
0.925 (0.972) |
0.154 (0.248) |
0.00049 (0.00213) |
0.00296 (0.00991) |
0.59 (0.695) |
0.55 (0.66) |
0.0186 (0.0436) |
0.0351 (0.0747) |
11p loss | 18 (6%) | 270 |
2e-05 (0.000135) |
0.00073 (0.0031) |
0.523 (0.635) |
0.149 (0.241) |
6e-05 (0.000347) |
0.00264 (0.00909) |
0.462 (0.578) |
0.194 (0.295) |
0.0194 (0.0452) |
0.0139 (0.0342) |
11q loss | 21 (7%) | 267 |
1e-05 (7.25e-05) |
4e-05 (0.000255) |
0.0978 (0.169) |
0.0112 (0.0288) |
0.00013 (0.000673) |
0.00209 (0.00754) |
0.779 (0.862) |
0.342 (0.457) |
0.0368 (0.0772) |
0.0773 (0.14) |
15q loss | 31 (11%) | 257 |
1e-05 (7.25e-05) |
0.00219 (0.00775) |
0.0916 (0.163) |
0.029 (0.0642) |
5e-05 (0.000301) |
1e-05 (7.25e-05) |
0.0939 (0.164) |
0.0611 (0.116) |
0.0711 (0.131) |
0.0023 (0.00806) |
16q loss | 7 (2%) | 281 |
0.00036 (0.00161) |
0.00738 (0.0202) |
0.635 (0.734) |
0.0622 (0.117) |
0.00215 (0.00772) |
0.0128 (0.0318) |
0.391 (0.508) |
0.38 (0.499) |
0.0327 (0.0706) |
0.0364 (0.0765) |
17p loss | 12 (4%) | 276 |
0.00412 (0.0129) |
0.00032 (0.00145) |
0.434 (0.551) |
0.548 (0.658) |
1e-05 (7.25e-05) |
0.0003 (0.00141) |
0.429 (0.545) |
0.653 (0.754) |
0.00649 (0.0182) |
0.00074 (0.00311) |
22q loss | 60 (21%) | 228 |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.437 (0.551) |
0.014 (0.0344) |
1e-05 (7.25e-05) |
1e-05 (7.25e-05) |
0.95 (0.99) |
0.694 (0.786) |
0.0544 (0.105) |
0.00519 (0.0153) |
xq loss | 30 (10%) | 258 |
1e-05 (7.25e-05) |
2e-05 (0.000135) |
0.459 (0.574) |
0.0141 (0.0344) |
1e-05 (7.25e-05) |
9e-05 (0.000497) |
0.144 (0.235) |
0.629 (0.729) |
0.0522 (0.102) |
0.0032 (0.0105) |
6p gain | 10 (3%) | 278 |
0.049 (0.0968) |
0.00363 (0.0116) |
0.163 (0.258) |
0.134 (0.219) |
0.00156 (0.00592) |
0.0624 (0.118) |
0.162 (0.257) |
0.04 (0.0832) |
0.104 (0.177) |
0.0403 (0.0836) |
11q gain | 10 (3%) | 278 |
1e-05 (7.25e-05) |
0.00343 (0.0111) |
0.349 (0.465) |
0.0171 (0.041) |
0.0218 (0.05) |
0.00385 (0.0122) |
0.92 (0.968) |
0.919 (0.968) |
0.819 (0.896) |
0.177 (0.276) |
6q loss | 26 (9%) | 262 |
1e-05 (7.25e-05) |
0.00241 (0.00837) |
0.878 (0.939) |
0.0416 (0.0853) |
0.00016 (0.000805) |
3e-05 (0.000195) |
0.274 (0.385) |
0.754 (0.842) |
0.0987 (0.17) |
0.201 (0.303) |
16p loss | 4 (1%) | 284 |
0.0429 (0.0876) |
0.0333 (0.0714) |
0.188 (0.288) |
0.0843 (0.151) |
0.0443 (0.0892) |
0.00767 (0.0209) |
0.832 (0.906) |
0.224 (0.327) |
0.114 (0.191) |
0.0097 (0.0256) |
19p loss | 17 (6%) | 271 |
8e-05 (0.000452) |
0.00217 (0.00775) |
1 (1.00) |
0.124 (0.206) |
0.00492 (0.0147) |
0.00636 (0.018) |
0.423 (0.538) |
0.0566 (0.108) |
0.089 (0.159) |
0.013 (0.032) |
5p gain | 33 (11%) | 255 |
1e-05 (7.25e-05) |
0.00685 (0.0191) |
0.762 (0.848) |
0.843 (0.915) |
0.0184 (0.0434) |
0.00017 (0.00085) |
0.589 (0.695) |
0.211 (0.314) |
0.331 (0.447) |
0.118 (0.196) |
5q gain | 31 (11%) | 257 |
1e-05 (7.25e-05) |
0.00112 (0.00439) |
0.538 (0.647) |
0.779 (0.862) |
0.00564 (0.0163) |
5e-05 (0.000301) |
0.381 (0.5) |
0.263 (0.372) |
0.47 (0.585) |
0.254 (0.363) |
8q gain | 25 (9%) | 263 |
0.126 (0.208) |
9e-05 (0.000497) |
0.279 (0.39) |
0.449 (0.565) |
0.0128 (0.0318) |
0.0441 (0.0892) |
0.107 (0.182) |
0.0668 (0.124) |
0.0435 (0.0885) |
0.0971 (0.169) |
11p gain | 11 (4%) | 277 |
0.00038 (0.00168) |
0.02 (0.0462) |
0.575 (0.683) |
0.017 (0.0409) |
0.187 (0.286) |
0.00029 (0.00138) |
1 (1.00) |
1 (1.00) |
0.82 (0.896) |
0.177 (0.276) |
14q gain | 3 (1%) | 285 |
0.241 (0.347) |
0.0175 (0.0416) |
0.0176 (0.0416) |
0.407 (0.524) |
0.492 (0.605) |
0.0357 (0.0758) |
1 (1.00) |
0.479 (0.593) |
0.303 (0.417) |
0.012 (0.0304) |
1p loss | 30 (10%) | 258 |
1e-05 (7.25e-05) |
0.0313 (0.0687) |
0.891 (0.948) |
0.632 (0.732) |
7e-05 (0.000398) |
0.00084 (0.00347) |
0.275 (0.386) |
0.0636 (0.119) |
0.838 (0.91) |
0.125 (0.206) |
3q loss | 7 (2%) | 281 |
1e-05 (7.25e-05) |
0.00183 (0.00677) |
0.533 (0.643) |
0.203 (0.306) |
0.0219 (0.05) |
0.00298 (0.00993) |
0.389 (0.507) |
0.723 (0.816) |
0.393 (0.51) |
0.294 (0.407) |
19q loss | 16 (6%) | 272 |
2e-05 (0.000135) |
0.00467 (0.0142) |
0.796 (0.875) |
0.111 (0.186) |
0.0049 (0.0147) |
0.0226 (0.0511) |
0.59 (0.695) |
0.414 (0.529) |
0.0894 (0.159) |
0.108 (0.183) |
2q gain | 47 (16%) | 241 |
1e-05 (7.25e-05) |
0.00744 (0.0203) |
1 (1.00) |
0.0328 (0.0706) |
0.603 (0.707) |
0.738 (0.828) |
0.25 (0.359) |
0.109 (0.184) |
0.409 (0.524) |
0.276 (0.386) |
6q gain | 8 (3%) | 280 |
0.0225 (0.0511) |
0.0017 (0.00632) |
0.627 (0.729) |
0.175 (0.273) |
0.0123 (0.0308) |
0.132 (0.216) |
0.22 (0.323) |
0.161 (0.257) |
0.128 (0.21) |
0.0618 (0.117) |
10p gain | 9 (3%) | 279 |
0.00099 (0.00398) |
0.0334 (0.0714) |
1 (1.00) |
0.0342 (0.0729) |
0.0923 (0.163) |
0.357 (0.474) |
0.22 (0.323) |
0.628 (0.729) |
0.894 (0.948) |
0.185 (0.286) |
10q gain | 9 (3%) | 279 |
0.00108 (0.00425) |
0.0323 (0.0702) |
1 (1.00) |
0.0327 (0.0706) |
0.092 (0.163) |
0.357 (0.474) |
0.224 (0.327) |
0.625 (0.728) |
0.892 (0.948) |
0.186 (0.286) |
12p gain | 112 (39%) | 176 |
0.00557 (0.0162) |
0.299 (0.413) |
0.0295 (0.0651) |
0.0789 (0.143) |
0.0002 (0.000974) |
0.117 (0.194) |
0.215 (0.317) |
0.0509 (0.1) |
0.675 (0.774) |
0.0936 (0.164) |
12q gain | 112 (39%) | 176 |
0.0052 (0.0153) |
0.302 (0.416) |
0.0282 (0.063) |
0.0802 (0.145) |
0.00023 (0.00111) |
0.115 (0.193) |
0.215 (0.317) |
0.0519 (0.102) |
0.677 (0.775) |
0.0931 (0.164) |
19p gain | 4 (1%) | 284 |
0.0016 (0.00601) |
0.69 (0.784) |
0.31 (0.425) |
0.383 (0.5) |
0.0456 (0.0911) |
0.041 (0.0845) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.316 (0.43) |
19q gain | 4 (1%) | 284 |
0.0016 (0.00601) |
0.691 (0.784) |
0.31 (0.425) |
0.383 (0.5) |
0.0453 (0.0908) |
0.041 (0.0845) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.314 (0.428) |
1q loss | 21 (7%) | 267 |
0.00026 (0.00125) |
0.729 (0.82) |
0.849 (0.919) |
0.378 (0.499) |
0.0559 (0.107) |
0.00814 (0.022) |
0.201 (0.303) |
0.013 (0.032) |
0.567 (0.676) |
0.216 (0.317) |
2p loss | 5 (2%) | 283 |
0.275 (0.386) |
0.00992 (0.026) |
0.017 (0.0409) |
0.208 (0.311) |
0.0162 (0.0392) |
0.0747 (0.137) |
0.28 (0.391) |
0.74 (0.828) |
||
8p loss | 16 (6%) | 272 |
0.00154 (0.00587) |
0.318 (0.431) |
0.169 (0.266) |
0.287 (0.399) |
0.00462 (0.0141) |
0.00919 (0.0246) |
0.855 (0.924) |
0.947 (0.989) |
0.369 (0.488) |
0.229 (0.332) |
8q loss | 9 (3%) | 279 |
0.00248 (0.00858) |
0.382 (0.5) |
0.444 (0.56) |
0.411 (0.527) |
0.0121 (0.0306) |
0.00059 (0.00255) |
0.915 (0.966) |
0.623 (0.727) |
0.685 (0.782) |
0.533 (0.643) |
2p gain | 42 (15%) | 246 |
1e-05 (7.25e-05) |
0.00695 (0.0193) |
0.941 (0.987) |
0.12 (0.199) |
0.134 (0.219) |
0.901 (0.954) |
0.254 (0.363) |
0.147 (0.239) |
0.781 (0.863) |
0.199 (0.302) |
9p gain | 3 (1%) | 285 |
0.875 (0.939) |
0.0993 (0.171) |
0.0363 (0.0765) |
0.291 (0.403) |
0.48 (0.593) |
0.301 (0.416) |
0.0116 (0.0298) |
|||
15q gain | 5 (2%) | 283 |
0.00031 (0.00142) |
0.0199 (0.0462) |
0.311 (0.425) |
0.205 (0.307) |
0.221 (0.323) |
0.263 (0.372) |
0.527 (0.639) |
0.231 (0.334) |
||
8p gain | 20 (7%) | 268 |
0.746 (0.834) |
0.0105 (0.0274) |
0.167 (0.264) |
0.56 (0.669) |
0.0998 (0.171) |
0.0803 (0.145) |
0.359 (0.476) |
0.325 (0.439) |
0.408 (0.524) |
0.379 (0.499) |
18p gain | 12 (4%) | 276 |
0.00285 (0.00967) |
0.204 (0.307) |
0.471 (0.585) |
0.793 (0.873) |
0.555 (0.664) |
0.486 (0.599) |
0.168 (0.265) |
0.571 (0.679) |
0.465 (0.58) |
0.761 (0.848) |
18q gain | 9 (3%) | 279 |
0.0027 (0.00925) |
0.0929 (0.164) |
0.263 (0.372) |
0.593 (0.696) |
0.579 (0.687) |
0.163 (0.258) |
0.405 (0.522) |
0.208 (0.311) |
0.324 (0.439) |
0.395 (0.511) |
22q gain | 5 (2%) | 283 |
0.00871 (0.0234) |
0.727 (0.819) |
1 (1.00) |
0.883 (0.943) |
0.862 (0.928) |
0.716 (0.81) |
0.53 (0.641) |
0.391 (0.508) |
0.869 (0.934) |
1 (1.00) |
2q loss | 3 (1%) | 285 |
0.661 (0.762) |
0.105 (0.178) |
0.1 (0.171) |
0.0361 (0.0763) |
0.778 (0.862) |
1 (1.00) |
||||
21q loss | 43 (15%) | 245 |
0.00062 (0.00267) |
0.456 (0.572) |
0.073 (0.134) |
0.238 (0.343) |
0.188 (0.288) |
0.421 (0.537) |
0.876 (0.939) |
0.194 (0.295) |
0.787 (0.868) |
0.0662 (0.124) |
4p gain | 10 (3%) | 278 |
0.241 (0.347) |
0.812 (0.891) |
0.893 (0.948) |
0.435 (0.551) |
0.326 (0.44) |
0.684 (0.782) |
0.673 (0.773) |
0.848 (0.919) |
0.838 (0.91) |
0.945 (0.989) |
4q gain | 9 (3%) | 279 |
0.517 (0.63) |
0.813 (0.891) |
0.893 (0.948) |
0.435 (0.551) |
0.53 (0.641) |
0.739 (0.828) |
0.402 (0.52) |
0.69 (0.784) |
0.495 (0.607) |
1 (1.00) |
13q gain | 28 (10%) | 260 |
0.225 (0.327) |
0.966 (1.00) |
0.877 (0.939) |
0.689 (0.784) |
0.185 (0.286) |
0.774 (0.86) |
0.824 (0.899) |
0.552 (0.661) |
0.347 (0.463) |
0.312 (0.426) |
21q gain | 19 (7%) | 269 |
0.515 (0.628) |
0.151 (0.244) |
0.607 (0.709) |
0.517 (0.63) |
0.11 (0.185) |
0.949 (0.99) |
0.214 (0.317) |
0.085 (0.152) |
0.508 (0.622) |
0.0836 (0.151) |
P value = 4e-05 (Fisher's exact test), Q value = 0.00026
Table S1. Gene #1: '1p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
1P GAIN MUTATED | 1 | 0 | 0 | 8 |
1P GAIN WILD-TYPE | 113 | 76 | 46 | 44 |
Figure S1. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D1V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00013
Table S2. Gene #1: '1p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
1P GAIN MUTATED | 1 | 8 | 0 |
1P GAIN WILD-TYPE | 81 | 63 | 119 |
Figure S2. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D1V2.png)
P value = 0.0286 (Fisher's exact test), Q value = 0.064
Table S3. Gene #1: '1p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
1P GAIN MUTATED | 2 | 0 | 5 | 0 |
1P GAIN WILD-TYPE | 37 | 66 | 60 | 43 |
Figure S3. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D1V4.png)
P value = 0.00352 (Fisher's exact test), Q value = 0.011
Table S4. Gene #1: '1p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
1P GAIN MUTATED | 0 | 0 | 1 | 8 |
1P GAIN WILD-TYPE | 34 | 96 | 65 | 84 |
Figure S4. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D1V5.png)
P value = 0.0033 (Fisher's exact test), Q value = 0.011
Table S5. Gene #1: '1p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
1P GAIN MUTATED | 5 | 0 | 4 |
1P GAIN WILD-TYPE | 113 | 123 | 43 |
Figure S5. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D1V6.png)
P value = 0.00591 (Fisher's exact test), Q value = 0.017
Table S6. Gene #1: '1p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
1P GAIN MUTATED | 1 | 4 | 3 | 0 |
1P GAIN WILD-TYPE | 102 | 71 | 12 | 29 |
Figure S6. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D1V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S7. Gene #2: '1q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
1Q GAIN MUTATED | 4 | 1 | 0 | 12 |
1Q GAIN WILD-TYPE | 110 | 75 | 46 | 40 |
Figure S7. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D2V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S8. Gene #2: '1q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
1Q GAIN MUTATED | 3 | 13 | 0 |
1Q GAIN WILD-TYPE | 79 | 58 | 119 |
Figure S8. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D2V2.png)
P value = 0.0491 (Fisher's exact test), Q value = 0.097
Table S9. Gene #2: '1q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
1Q GAIN MUTATED | 2 | 1 | 8 | 1 |
1Q GAIN WILD-TYPE | 37 | 65 | 57 | 42 |
Figure S9. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D2V4.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00035
Table S10. Gene #2: '1q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
1Q GAIN MUTATED | 0 | 0 | 3 | 14 |
1Q GAIN WILD-TYPE | 34 | 96 | 63 | 78 |
Figure S10. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D2V5.png)
P value = 9e-05 (Fisher's exact test), Q value = 5e-04
Table S11. Gene #2: '1q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
1Q GAIN MUTATED | 12 | 0 | 5 |
1Q GAIN WILD-TYPE | 106 | 123 | 42 |
Figure S11. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D2V6.png)
P value = 0.00943 (Fisher's exact test), Q value = 0.025
Table S12. Gene #2: '1q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
1Q GAIN MUTATED | 9 | 0 | 8 |
1Q GAIN WILD-TYPE | 111 | 80 | 80 |
Figure S12. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D2V8.png)
P value = 0.00648 (Fisher's exact test), Q value = 0.018
Table S13. Gene #2: '1q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
1Q GAIN MUTATED | 4 | 1 | 10 |
1Q GAIN WILD-TYPE | 66 | 80 | 61 |
Figure S13. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D2V9.png)
P value = 0.00049 (Fisher's exact test), Q value = 0.0021
Table S14. Gene #2: '1q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
1Q GAIN MUTATED | 2 | 9 | 4 | 0 |
1Q GAIN WILD-TYPE | 101 | 66 | 11 | 29 |
Figure S14. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D2V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S15. Gene #3: '2p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
2P GAIN MUTATED | 1 | 3 | 14 | 24 |
2P GAIN WILD-TYPE | 113 | 73 | 32 | 28 |
Figure S15. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D3V1.png)
P value = 0.00695 (Fisher's exact test), Q value = 0.019
Table S16. Gene #3: '2p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
2P GAIN MUTATED | 4 | 14 | 21 |
2P GAIN WILD-TYPE | 78 | 57 | 98 |
Figure S16. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D3V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S17. Gene #4: '2q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
2Q GAIN MUTATED | 1 | 4 | 15 | 27 |
2Q GAIN WILD-TYPE | 113 | 72 | 31 | 25 |
Figure S17. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D4V1.png)
P value = 0.00744 (Fisher's exact test), Q value = 0.02
Table S18. Gene #4: '2q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
2Q GAIN MUTATED | 5 | 15 | 24 |
2Q GAIN WILD-TYPE | 77 | 56 | 95 |
Figure S18. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D4V2.png)
P value = 0.0328 (Fisher's exact test), Q value = 0.071
Table S19. Gene #4: '2q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
2Q GAIN MUTATED | 9 | 9 | 15 | 2 |
2Q GAIN WILD-TYPE | 30 | 57 | 50 | 41 |
Figure S19. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D4V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S20. Gene #5: '3p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
3P GAIN MUTATED | 11 | 8 | 45 | 10 |
3P GAIN WILD-TYPE | 103 | 68 | 1 | 42 |
Figure S20. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D5V1.png)
P value = 0.0017 (Fisher's exact test), Q value = 0.0063
Table S21. Gene #5: '3p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
3P GAIN MUTATED | 20 | 8 | 40 |
3P GAIN WILD-TYPE | 62 | 63 | 79 |
Figure S21. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D5V2.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.00059
Table S22. Gene #5: '3p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
3P GAIN MUTATED | 20 | 18 | 7 | 8 |
3P GAIN WILD-TYPE | 19 | 48 | 58 | 35 |
Figure S22. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D5V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S23. Gene #5: '3p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
3P GAIN MUTATED | 13 | 30 | 25 | 6 |
3P GAIN WILD-TYPE | 21 | 66 | 41 | 86 |
Figure S23. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D5V5.png)
P value = 0.0019 (Fisher's exact test), Q value = 0.007
Table S24. Gene #5: '3p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
3P GAIN MUTATED | 26 | 43 | 5 |
3P GAIN WILD-TYPE | 92 | 80 | 42 |
Figure S24. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D5V6.png)
P value = 0.00086 (Fisher's exact test), Q value = 0.0035
Table S25. Gene #5: '3p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
3P GAIN MUTATED | 31 | 31 | 12 |
3P GAIN WILD-TYPE | 89 | 49 | 76 |
Figure S25. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D5V8.png)
P value = 0.00095 (Fisher's exact test), Q value = 0.0038
Table S26. Gene #5: '3p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
3P GAIN MUTATED | 35 | 7 | 3 | 6 |
3P GAIN WILD-TYPE | 68 | 68 | 12 | 23 |
Figure S26. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D5V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S27. Gene #6: '3q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
3Q GAIN MUTATED | 20 | 14 | 45 | 15 |
3Q GAIN WILD-TYPE | 94 | 62 | 1 | 37 |
Figure S27. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D6V1.png)
P value = 0.00469 (Fisher's exact test), Q value = 0.014
Table S28. Gene #6: '3q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
3Q GAIN MUTATED | 24 | 14 | 50 |
3Q GAIN WILD-TYPE | 58 | 57 | 69 |
Figure S28. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D6V2.png)
P value = 0.00429 (Fisher's exact test), Q value = 0.013
Table S29. Gene #6: '3q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
3Q GAIN MUTATED | 21 | 23 | 14 | 10 |
3Q GAIN WILD-TYPE | 18 | 43 | 51 | 33 |
Figure S29. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D6V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S30. Gene #6: '3q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
3Q GAIN MUTATED | 18 | 35 | 31 | 10 |
3Q GAIN WILD-TYPE | 16 | 61 | 35 | 82 |
Figure S30. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D6V5.png)
P value = 0.00356 (Fisher's exact test), Q value = 0.011
Table S31. Gene #6: '3q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
3Q GAIN MUTATED | 34 | 52 | 8 |
3Q GAIN WILD-TYPE | 84 | 71 | 39 |
Figure S31. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D6V6.png)
P value = 0.0151 (Fisher's exact test), Q value = 0.037
Table S32. Gene #6: '3q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
3Q GAIN MUTATED | 38 | 36 | 20 |
3Q GAIN WILD-TYPE | 51 | 74 | 69 |
Figure S32. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D6V7.png)
P value = 0.00074 (Fisher's exact test), Q value = 0.0031
Table S33. Gene #6: '3q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
3Q GAIN MUTATED | 40 | 37 | 17 |
3Q GAIN WILD-TYPE | 80 | 43 | 71 |
Figure S33. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D6V8.png)
P value = 0.00448 (Fisher's exact test), Q value = 0.014
Table S34. Gene #6: '3q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
3Q GAIN MUTATED | 44 | 16 | 3 | 5 |
3Q GAIN WILD-TYPE | 59 | 59 | 12 | 24 |
Figure S34. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D6V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S35. Gene #9: '5p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
5P GAIN MUTATED | 13 | 3 | 0 | 17 |
5P GAIN WILD-TYPE | 101 | 73 | 46 | 35 |
Figure S35. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D9V1.png)
P value = 0.00685 (Fisher's exact test), Q value = 0.019
Table S36. Gene #9: '5p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
5P GAIN MUTATED | 10 | 14 | 6 |
5P GAIN WILD-TYPE | 72 | 57 | 113 |
Figure S36. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D9V2.png)
P value = 0.0184 (Fisher's exact test), Q value = 0.043
Table S37. Gene #9: '5p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
5P GAIN MUTATED | 4 | 5 | 6 | 18 |
5P GAIN WILD-TYPE | 30 | 91 | 60 | 74 |
Figure S37. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D9V5.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00085
Table S38. Gene #9: '5p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
5P GAIN MUTATED | 23 | 4 | 6 |
5P GAIN WILD-TYPE | 95 | 119 | 41 |
Figure S38. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D9V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S39. Gene #10: '5q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
5Q GAIN MUTATED | 14 | 1 | 0 | 16 |
5Q GAIN WILD-TYPE | 100 | 75 | 46 | 36 |
Figure S39. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D10V1.png)
P value = 0.00112 (Fisher's exact test), Q value = 0.0044
Table S40. Gene #10: '5q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
5Q GAIN MUTATED | 10 | 14 | 4 |
5Q GAIN WILD-TYPE | 72 | 57 | 115 |
Figure S40. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D10V2.png)
P value = 0.00564 (Fisher's exact test), Q value = 0.016
Table S41. Gene #10: '5q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
5Q GAIN MUTATED | 4 | 3 | 7 | 17 |
5Q GAIN WILD-TYPE | 30 | 93 | 59 | 75 |
Figure S41. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D10V5.png)
P value = 5e-05 (Fisher's exact test), Q value = 3e-04
Table S42. Gene #10: '5q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
5Q GAIN MUTATED | 23 | 3 | 5 |
5Q GAIN WILD-TYPE | 95 | 120 | 42 |
Figure S42. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D10V6.png)
P value = 0.049 (Fisher's exact test), Q value = 0.097
Table S43. Gene #11: '6p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
6P GAIN MUTATED | 4 | 1 | 0 | 5 |
6P GAIN WILD-TYPE | 110 | 75 | 46 | 47 |
Figure S43. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D11V1.png)
P value = 0.00363 (Fisher's exact test), Q value = 0.012
Table S44. Gene #11: '6p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
6P GAIN MUTATED | 1 | 7 | 1 |
6P GAIN WILD-TYPE | 81 | 64 | 118 |
Figure S44. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D11V2.png)
P value = 0.00156 (Fisher's exact test), Q value = 0.0059
Table S45. Gene #11: '6p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
6P GAIN MUTATED | 0 | 1 | 0 | 9 |
6P GAIN WILD-TYPE | 34 | 95 | 66 | 83 |
Figure S45. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D11V5.png)
P value = 0.04 (Fisher's exact test), Q value = 0.083
Table S46. Gene #11: '6p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
6P GAIN MUTATED | 4 | 0 | 6 |
6P GAIN WILD-TYPE | 116 | 80 | 82 |
Figure S46. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D11V8.png)
P value = 0.0403 (Fisher's exact test), Q value = 0.084
Table S47. Gene #11: '6p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
6P GAIN MUTATED | 1 | 5 | 2 | 1 |
6P GAIN WILD-TYPE | 102 | 70 | 13 | 28 |
Figure S47. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D11V10.png)
P value = 0.0225 (Fisher's exact test), Q value = 0.051
Table S48. Gene #12: '6q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
6Q GAIN MUTATED | 2 | 1 | 0 | 5 |
6Q GAIN WILD-TYPE | 112 | 75 | 46 | 47 |
Figure S48. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D12V1.png)
P value = 0.0017 (Fisher's exact test), Q value = 0.0063
Table S49. Gene #12: '6q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
6Q GAIN MUTATED | 0 | 6 | 1 |
6Q GAIN WILD-TYPE | 82 | 65 | 118 |
Figure S49. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D12V2.png)
P value = 0.0123 (Fisher's exact test), Q value = 0.031
Table S50. Gene #12: '6q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
6Q GAIN MUTATED | 0 | 1 | 0 | 7 |
6Q GAIN WILD-TYPE | 34 | 95 | 66 | 85 |
Figure S50. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D12V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S51. Gene #13: '7p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
7P GAIN MUTATED | 32 | 73 | 43 | 24 |
7P GAIN WILD-TYPE | 82 | 3 | 3 | 28 |
Figure S51. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D13V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S52. Gene #13: '7p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
7P GAIN MUTATED | 38 | 23 | 101 |
7P GAIN WILD-TYPE | 44 | 48 | 18 |
Figure S52. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D13V2.png)
P value = 0.00646 (Fisher's exact test), Q value = 0.018
Table S53. Gene #13: '7p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
7P GAIN MUTATED | 45 | 60 | 26 |
7P GAIN WILD-TYPE | 30 | 22 | 30 |
Figure S53. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D13V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S54. Gene #13: '7p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
7P GAIN MUTATED | 31 | 53 | 27 | 20 |
7P GAIN WILD-TYPE | 8 | 13 | 38 | 23 |
Figure S54. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D13V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S55. Gene #13: '7p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
7P GAIN MUTATED | 29 | 82 | 39 | 22 |
7P GAIN WILD-TYPE | 5 | 14 | 27 | 70 |
Figure S55. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D13V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S56. Gene #13: '7p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
7P GAIN MUTATED | 53 | 103 | 16 |
7P GAIN WILD-TYPE | 65 | 20 | 31 |
Figure S56. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D13V6.png)
P value = 0.0425 (Fisher's exact test), Q value = 0.087
Table S57. Gene #13: '7p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
7P GAIN MUTATED | 45 | 75 | 52 |
7P GAIN WILD-TYPE | 44 | 35 | 37 |
Figure S57. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D13V7.png)
P value = 0.00016 (Fisher's exact test), Q value = 0.00081
Table S58. Gene #13: '7p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
7P GAIN MUTATED | 63 | 63 | 46 |
7P GAIN WILD-TYPE | 57 | 17 | 42 |
Figure S58. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D13V8.png)
P value = 0.00015 (Fisher's exact test), Q value = 0.00077
Table S59. Gene #13: '7p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
7P GAIN MUTATED | 33 | 62 | 34 |
7P GAIN WILD-TYPE | 37 | 19 | 37 |
Figure S59. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D13V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S60. Gene #13: '7p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
7P GAIN MUTATED | 70 | 30 | 4 | 25 |
7P GAIN WILD-TYPE | 33 | 45 | 11 | 4 |
Figure S60. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D13V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S61. Gene #14: '7q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
7Q GAIN MUTATED | 32 | 73 | 43 | 25 |
7Q GAIN WILD-TYPE | 82 | 3 | 3 | 27 |
Figure S61. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D14V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S62. Gene #14: '7q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
7Q GAIN MUTATED | 38 | 24 | 101 |
7Q GAIN WILD-TYPE | 44 | 47 | 18 |
Figure S62. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D14V2.png)
P value = 0.0118 (Fisher's exact test), Q value = 0.03
Table S63. Gene #14: '7q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
7Q GAIN MUTATED | 45 | 60 | 27 |
7Q GAIN WILD-TYPE | 30 | 22 | 29 |
Figure S63. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D14V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S64. Gene #14: '7q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
7Q GAIN MUTATED | 31 | 53 | 28 | 20 |
7Q GAIN WILD-TYPE | 8 | 13 | 37 | 23 |
Figure S64. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D14V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S65. Gene #14: '7q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
7Q GAIN MUTATED | 29 | 82 | 39 | 23 |
7Q GAIN WILD-TYPE | 5 | 14 | 27 | 69 |
Figure S65. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D14V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S66. Gene #14: '7q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
7Q GAIN MUTATED | 54 | 103 | 16 |
7Q GAIN WILD-TYPE | 64 | 20 | 31 |
Figure S66. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D14V6.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.00094
Table S67. Gene #14: '7q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
7Q GAIN MUTATED | 64 | 63 | 46 |
7Q GAIN WILD-TYPE | 56 | 17 | 42 |
Figure S67. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D14V8.png)
P value = 0.00028 (Fisher's exact test), Q value = 0.0013
Table S68. Gene #14: '7q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
7Q GAIN MUTATED | 34 | 62 | 34 |
7Q GAIN WILD-TYPE | 36 | 19 | 37 |
Figure S68. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D14V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S69. Gene #14: '7q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
7Q GAIN MUTATED | 70 | 31 | 4 | 25 |
7Q GAIN WILD-TYPE | 33 | 44 | 11 | 4 |
Figure S69. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D14V10.png)
P value = 0.0105 (Fisher's exact test), Q value = 0.027
Table S70. Gene #15: '8p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
8P GAIN MUTATED | 3 | 11 | 5 |
8P GAIN WILD-TYPE | 79 | 60 | 114 |
Figure S70. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D15V2.png)
P value = 9e-05 (Fisher's exact test), Q value = 5e-04
Table S71. Gene #16: '8q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
8Q GAIN MUTATED | 2 | 15 | 6 |
8Q GAIN WILD-TYPE | 80 | 56 | 113 |
Figure S71. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D16V2.png)
P value = 0.0128 (Fisher's exact test), Q value = 0.032
Table S72. Gene #16: '8q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
8Q GAIN MUTATED | 0 | 6 | 4 | 15 |
8Q GAIN WILD-TYPE | 34 | 90 | 62 | 77 |
Figure S72. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D16V5.png)
P value = 0.0441 (Fisher's exact test), Q value = 0.089
Table S73. Gene #16: '8q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
8Q GAIN MUTATED | 14 | 5 | 6 |
8Q GAIN WILD-TYPE | 104 | 118 | 41 |
Figure S73. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D16V6.png)
P value = 0.0435 (Fisher's exact test), Q value = 0.089
Table S74. Gene #16: '8q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
8Q GAIN MUTATED | 4 | 7 | 13 |
8Q GAIN WILD-TYPE | 66 | 74 | 58 |
Figure S74. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D16V9.png)
P value = 0.0363 (Fisher's exact test), Q value = 0.076
Table S75. Gene #17: '9p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
9P GAIN MUTATED | 1 | 0 | 2 |
9P GAIN WILD-TYPE | 117 | 123 | 45 |
Figure S75. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D17V6.png)
P value = 0.0116 (Fisher's exact test), Q value = 0.03
Table S76. Gene #17: '9p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
9P GAIN MUTATED | 0 | 1 | 2 | 0 |
9P GAIN WILD-TYPE | 103 | 74 | 13 | 29 |
Figure S76. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D17V10.png)
P value = 0.00099 (Fisher's exact test), Q value = 0.004
Table S77. Gene #18: '10p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
10P GAIN MUTATED | 0 | 2 | 1 | 6 |
10P GAIN WILD-TYPE | 114 | 74 | 45 | 46 |
Figure S77. Get High-res Image Gene #18: '10p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D18V1.png)
P value = 0.0334 (Fisher's exact test), Q value = 0.071
Table S78. Gene #18: '10p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
10P GAIN MUTATED | 1 | 5 | 1 |
10P GAIN WILD-TYPE | 81 | 66 | 118 |
Figure S78. Get High-res Image Gene #18: '10p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D18V2.png)
P value = 0.0342 (Fisher's exact test), Q value = 0.073
Table S79. Gene #18: '10p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
10P GAIN MUTATED | 0 | 0 | 5 | 1 |
10P GAIN WILD-TYPE | 39 | 66 | 60 | 42 |
Figure S79. Get High-res Image Gene #18: '10p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D18V4.png)
P value = 0.00108 (Fisher's exact test), Q value = 0.0043
Table S80. Gene #19: '10q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
10Q GAIN MUTATED | 0 | 2 | 1 | 6 |
10Q GAIN WILD-TYPE | 114 | 74 | 45 | 46 |
Figure S80. Get High-res Image Gene #19: '10q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D19V1.png)
P value = 0.0323 (Fisher's exact test), Q value = 0.07
Table S81. Gene #19: '10q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
10Q GAIN MUTATED | 1 | 5 | 1 |
10Q GAIN WILD-TYPE | 81 | 66 | 118 |
Figure S81. Get High-res Image Gene #19: '10q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D19V2.png)
P value = 0.0327 (Fisher's exact test), Q value = 0.071
Table S82. Gene #19: '10q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
10Q GAIN MUTATED | 0 | 0 | 5 | 1 |
10Q GAIN WILD-TYPE | 39 | 66 | 60 | 42 |
Figure S82. Get High-res Image Gene #19: '10q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D19V4.png)
P value = 0.00038 (Fisher's exact test), Q value = 0.0017
Table S83. Gene #20: '11p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
11P GAIN MUTATED | 2 | 1 | 0 | 8 |
11P GAIN WILD-TYPE | 112 | 75 | 46 | 44 |
Figure S83. Get High-res Image Gene #20: '11p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D20V1.png)
P value = 0.02 (Fisher's exact test), Q value = 0.046
Table S84. Gene #20: '11p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
11P GAIN MUTATED | 3 | 6 | 1 |
11P GAIN WILD-TYPE | 79 | 65 | 118 |
Figure S84. Get High-res Image Gene #20: '11p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D20V2.png)
P value = 0.017 (Fisher's exact test), Q value = 0.041
Table S85. Gene #20: '11p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
11P GAIN MUTATED | 0 | 2 | 7 | 0 |
11P GAIN WILD-TYPE | 39 | 64 | 58 | 43 |
Figure S85. Get High-res Image Gene #20: '11p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D20V4.png)
P value = 0.00029 (Fisher's exact test), Q value = 0.0014
Table S86. Gene #20: '11p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
11P GAIN MUTATED | 5 | 0 | 6 |
11P GAIN WILD-TYPE | 113 | 123 | 41 |
Figure S86. Get High-res Image Gene #20: '11p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D20V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S87. Gene #21: '11q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
11Q GAIN MUTATED | 1 | 0 | 0 | 9 |
11Q GAIN WILD-TYPE | 113 | 76 | 46 | 43 |
Figure S87. Get High-res Image Gene #21: '11q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D21V1.png)
P value = 0.00343 (Fisher's exact test), Q value = 0.011
Table S88. Gene #21: '11q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
11Q GAIN MUTATED | 1 | 7 | 1 |
11Q GAIN WILD-TYPE | 81 | 64 | 118 |
Figure S88. Get High-res Image Gene #21: '11q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D21V2.png)
P value = 0.0171 (Fisher's exact test), Q value = 0.041
Table S89. Gene #21: '11q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
11Q GAIN MUTATED | 0 | 2 | 7 | 0 |
11Q GAIN WILD-TYPE | 39 | 64 | 58 | 43 |
Figure S89. Get High-res Image Gene #21: '11q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D21V4.png)
P value = 0.0218 (Fisher's exact test), Q value = 0.05
Table S90. Gene #21: '11q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
11Q GAIN MUTATED | 0 | 1 | 1 | 8 |
11Q GAIN WILD-TYPE | 34 | 95 | 65 | 84 |
Figure S90. Get High-res Image Gene #21: '11q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D21V5.png)
P value = 0.00385 (Fisher's exact test), Q value = 0.012
Table S91. Gene #21: '11q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
11Q GAIN MUTATED | 6 | 0 | 4 |
11Q GAIN WILD-TYPE | 112 | 123 | 43 |
Figure S91. Get High-res Image Gene #21: '11q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D21V6.png)
P value = 0.00557 (Fisher's exact test), Q value = 0.016
Table S92. Gene #22: '12p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
12P GAIN MUTATED | 31 | 33 | 25 | 23 |
12P GAIN WILD-TYPE | 83 | 43 | 21 | 29 |
Figure S92. Get High-res Image Gene #22: '12p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D22V1.png)
P value = 0.0295 (Fisher's exact test), Q value = 0.065
Table S93. Gene #22: '12p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
12P GAIN MUTATED | 38 | 27 | 17 |
12P GAIN WILD-TYPE | 37 | 55 | 39 |
Figure S93. Get High-res Image Gene #22: '12p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D22V3.png)
P value = 2e-04 (Fisher's exact test), Q value = 0.00097
Table S94. Gene #22: '12p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
12P GAIN MUTATED | 21 | 40 | 30 | 21 |
12P GAIN WILD-TYPE | 13 | 56 | 36 | 71 |
Figure S94. Get High-res Image Gene #22: '12p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D22V5.png)
P value = 0.0052 (Fisher's exact test), Q value = 0.015
Table S95. Gene #23: '12q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
12Q GAIN MUTATED | 31 | 33 | 25 | 23 |
12Q GAIN WILD-TYPE | 83 | 43 | 21 | 29 |
Figure S95. Get High-res Image Gene #23: '12q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D23V1.png)
P value = 0.0282 (Fisher's exact test), Q value = 0.063
Table S96. Gene #23: '12q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
12Q GAIN MUTATED | 38 | 27 | 17 |
12Q GAIN WILD-TYPE | 37 | 55 | 39 |
Figure S96. Get High-res Image Gene #23: '12q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D23V3.png)
P value = 0.00023 (Fisher's exact test), Q value = 0.0011
Table S97. Gene #23: '12q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
12Q GAIN MUTATED | 21 | 40 | 30 | 21 |
12Q GAIN WILD-TYPE | 13 | 56 | 36 | 71 |
Figure S97. Get High-res Image Gene #23: '12q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D23V5.png)
P value = 0.0175 (Fisher's exact test), Q value = 0.042
Table S98. Gene #25: '14q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
14Q GAIN MUTATED | 0 | 3 | 0 |
14Q GAIN WILD-TYPE | 82 | 68 | 119 |
Figure S98. Get High-res Image Gene #25: '14q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D25V2.png)
P value = 0.0176 (Fisher's exact test), Q value = 0.042
Table S99. Gene #25: '14q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
14Q GAIN MUTATED | 0 | 0 | 3 |
14Q GAIN WILD-TYPE | 75 | 82 | 53 |
Figure S99. Get High-res Image Gene #25: '14q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D25V3.png)
P value = 0.0357 (Fisher's exact test), Q value = 0.076
Table S100. Gene #25: '14q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
14Q GAIN MUTATED | 1 | 0 | 2 |
14Q GAIN WILD-TYPE | 117 | 123 | 45 |
Figure S100. Get High-res Image Gene #25: '14q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D25V6.png)
P value = 0.012 (Fisher's exact test), Q value = 0.03
Table S101. Gene #25: '14q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
14Q GAIN MUTATED | 0 | 1 | 2 | 0 |
14Q GAIN WILD-TYPE | 103 | 74 | 13 | 29 |
Figure S101. Get High-res Image Gene #25: '14q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D25V10.png)
P value = 0.00031 (Fisher's exact test), Q value = 0.0014
Table S102. Gene #26: '15q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
15Q GAIN MUTATED | 0 | 0 | 0 | 5 |
15Q GAIN WILD-TYPE | 114 | 76 | 46 | 47 |
Figure S102. Get High-res Image Gene #26: '15q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D26V1.png)
P value = 0.0199 (Fisher's exact test), Q value = 0.046
Table S103. Gene #26: '15q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
15Q GAIN MUTATED | 0 | 4 | 1 |
15Q GAIN WILD-TYPE | 82 | 67 | 118 |
Figure S103. Get High-res Image Gene #26: '15q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D26V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S104. Gene #27: '16p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
16P GAIN MUTATED | 49 | 36 | 46 | 22 |
16P GAIN WILD-TYPE | 65 | 40 | 0 | 30 |
Figure S104. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D27V1.png)
P value = 0.0122 (Fisher's exact test), Q value = 0.031
Table S105. Gene #27: '16p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
16P GAIN MUTATED | 37 | 33 | 76 |
16P GAIN WILD-TYPE | 45 | 38 | 43 |
Figure S105. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D27V2.png)
P value = 0.00064 (Fisher's exact test), Q value = 0.0027
Table S106. Gene #27: '16p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
16P GAIN MUTATED | 27 | 35 | 23 | 30 |
16P GAIN WILD-TYPE | 12 | 31 | 42 | 13 |
Figure S106. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D27V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S107. Gene #27: '16p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
16P GAIN MUTATED | 18 | 57 | 50 | 28 |
16P GAIN WILD-TYPE | 16 | 39 | 16 | 64 |
Figure S107. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D27V5.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00019
Table S108. Gene #27: '16p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
16P GAIN MUTATED | 68 | 74 | 11 |
16P GAIN WILD-TYPE | 50 | 49 | 36 |
Figure S108. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D27V6.png)
P value = 0.00106 (Fisher's exact test), Q value = 0.0042
Table S109. Gene #27: '16p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
16P GAIN MUTATED | 51 | 69 | 33 |
16P GAIN WILD-TYPE | 38 | 41 | 56 |
Figure S109. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D27V7.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00013
Table S110. Gene #27: '16p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
16P GAIN MUTATED | 66 | 58 | 29 |
16P GAIN WILD-TYPE | 54 | 22 | 59 |
Figure S110. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D27V8.png)
P value = 0.00834 (Fisher's exact test), Q value = 0.022
Table S111. Gene #27: '16p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
16P GAIN MUTATED | 42 | 47 | 26 |
16P GAIN WILD-TYPE | 28 | 34 | 45 |
Figure S111. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D27V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00013
Table S112. Gene #27: '16p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
16P GAIN MUTATED | 71 | 29 | 4 | 11 |
16P GAIN WILD-TYPE | 32 | 46 | 11 | 18 |
Figure S112. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D27V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S113. Gene #28: '16q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
16Q GAIN MUTATED | 49 | 35 | 46 | 18 |
16Q GAIN WILD-TYPE | 65 | 41 | 0 | 34 |
Figure S113. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D28V1.png)
P value = 0.00626 (Fisher's exact test), Q value = 0.018
Table S114. Gene #28: '16q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
16Q GAIN MUTATED | 37 | 30 | 75 |
16Q GAIN WILD-TYPE | 45 | 41 | 44 |
Figure S114. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D28V2.png)
P value = 0.00194 (Fisher's exact test), Q value = 0.0071
Table S115. Gene #28: '16q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
16Q GAIN MUTATED | 27 | 35 | 23 | 28 |
16Q GAIN WILD-TYPE | 12 | 31 | 42 | 15 |
Figure S115. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D28V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S116. Gene #28: '16q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
16Q GAIN MUTATED | 18 | 56 | 50 | 24 |
16Q GAIN WILD-TYPE | 16 | 40 | 16 | 68 |
Figure S116. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D28V5.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00054
Table S117. Gene #28: '16q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
16Q GAIN MUTATED | 64 | 73 | 11 |
16Q GAIN WILD-TYPE | 54 | 50 | 36 |
Figure S117. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D28V6.png)
P value = 5e-05 (Fisher's exact test), Q value = 3e-04
Table S118. Gene #28: '16q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
16Q GAIN MUTATED | 49 | 70 | 29 |
16Q GAIN WILD-TYPE | 40 | 40 | 60 |
Figure S118. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D28V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S119. Gene #28: '16q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
16Q GAIN MUTATED | 62 | 58 | 28 |
16Q GAIN WILD-TYPE | 58 | 22 | 60 |
Figure S119. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D28V8.png)
P value = 0.00218 (Fisher's exact test), Q value = 0.0078
Table S120. Gene #28: '16q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
16Q GAIN MUTATED | 41 | 46 | 23 |
16Q GAIN WILD-TYPE | 29 | 35 | 48 |
Figure S120. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D28V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S121. Gene #28: '16q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
16Q GAIN MUTATED | 71 | 25 | 4 | 10 |
16Q GAIN WILD-TYPE | 32 | 50 | 11 | 19 |
Figure S121. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D28V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S122. Gene #29: '17p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
17P GAIN MUTATED | 29 | 75 | 45 | 25 |
17P GAIN WILD-TYPE | 85 | 1 | 1 | 27 |
Figure S122. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D29V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S123. Gene #29: '17p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
17P GAIN MUTATED | 37 | 22 | 105 |
17P GAIN WILD-TYPE | 45 | 49 | 14 |
Figure S123. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D29V2.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00035
Table S124. Gene #29: '17p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
17P GAIN MUTATED | 48 | 61 | 21 |
17P GAIN WILD-TYPE | 27 | 21 | 35 |
Figure S124. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D29V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S125. Gene #29: '17p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
17P GAIN MUTATED | 31 | 52 | 29 | 18 |
17P GAIN WILD-TYPE | 8 | 14 | 36 | 25 |
Figure S125. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D29V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S126. Gene #29: '17p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
17P GAIN MUTATED | 23 | 87 | 41 | 23 |
17P GAIN WILD-TYPE | 11 | 9 | 25 | 69 |
Figure S126. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D29V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S127. Gene #29: '17p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
17P GAIN MUTATED | 55 | 108 | 11 |
17P GAIN WILD-TYPE | 63 | 15 | 36 |
Figure S127. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D29V6.png)
P value = 0.00283 (Fisher's exact test), Q value = 0.0097
Table S128. Gene #29: '17p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
17P GAIN MUTATED | 45 | 80 | 49 |
17P GAIN WILD-TYPE | 44 | 30 | 40 |
Figure S128. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D29V7.png)
P value = 0.00031 (Fisher's exact test), Q value = 0.0014
Table S129. Gene #29: '17p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
17P GAIN MUTATED | 62 | 63 | 49 |
17P GAIN WILD-TYPE | 58 | 17 | 39 |
Figure S129. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D29V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S130. Gene #29: '17p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
17P GAIN MUTATED | 33 | 66 | 30 |
17P GAIN WILD-TYPE | 37 | 15 | 41 |
Figure S130. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D29V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S131. Gene #29: '17p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
17P GAIN MUTATED | 72 | 27 | 4 | 26 |
17P GAIN WILD-TYPE | 31 | 48 | 11 | 3 |
Figure S131. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D29V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S132. Gene #30: '17q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
17Q GAIN MUTATED | 38 | 75 | 45 | 33 |
17Q GAIN WILD-TYPE | 76 | 1 | 1 | 19 |
Figure S132. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D30V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S133. Gene #30: '17q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
17Q GAIN MUTATED | 42 | 33 | 105 |
17Q GAIN WILD-TYPE | 40 | 38 | 14 |
Figure S133. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D30V2.png)
P value = 0.00089 (Fisher's exact test), Q value = 0.0036
Table S134. Gene #30: '17q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
17Q GAIN MUTATED | 53 | 63 | 26 |
17Q GAIN WILD-TYPE | 22 | 19 | 30 |
Figure S134. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D30V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S135. Gene #30: '17q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
17Q GAIN MUTATED | 35 | 53 | 33 | 21 |
17Q GAIN WILD-TYPE | 4 | 13 | 32 | 22 |
Figure S135. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D30V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S136. Gene #30: '17q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
17Q GAIN MUTATED | 24 | 87 | 44 | 36 |
17Q GAIN WILD-TYPE | 10 | 9 | 22 | 56 |
Figure S136. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D30V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S137. Gene #30: '17q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
17Q GAIN MUTATED | 68 | 108 | 15 |
17Q GAIN WILD-TYPE | 50 | 15 | 32 |
Figure S137. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D30V6.png)
P value = 0.032 (Fisher's exact test), Q value = 0.07
Table S138. Gene #30: '17q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
17Q GAIN MUTATED | 53 | 83 | 55 |
17Q GAIN WILD-TYPE | 36 | 27 | 34 |
Figure S138. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D30V7.png)
P value = 0.00118 (Fisher's exact test), Q value = 0.0046
Table S139. Gene #30: '17q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
17Q GAIN MUTATED | 72 | 66 | 53 |
17Q GAIN WILD-TYPE | 48 | 14 | 35 |
Figure S139. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D30V8.png)
P value = 0.00031 (Fisher's exact test), Q value = 0.0014
Table S140. Gene #30: '17q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
17Q GAIN MUTATED | 39 | 66 | 38 |
17Q GAIN WILD-TYPE | 31 | 15 | 33 |
Figure S140. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D30V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00013
Table S141. Gene #30: '17q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
17Q GAIN MUTATED | 77 | 35 | 5 | 26 |
17Q GAIN WILD-TYPE | 26 | 40 | 10 | 3 |
Figure S141. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D30V10.png)
P value = 0.00285 (Fisher's exact test), Q value = 0.0097
Table S142. Gene #31: '18p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
18P GAIN MUTATED | 0 | 4 | 5 | 3 |
18P GAIN WILD-TYPE | 114 | 72 | 41 | 49 |
Figure S142. Get High-res Image Gene #31: '18p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D31V1.png)
P value = 0.0027 (Fisher's exact test), Q value = 0.0092
Table S143. Gene #32: '18q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
18Q GAIN MUTATED | 0 | 3 | 5 | 1 |
18Q GAIN WILD-TYPE | 114 | 73 | 41 | 51 |
Figure S143. Get High-res Image Gene #32: '18q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D32V1.png)
P value = 0.0016 (Fisher's exact test), Q value = 0.006
Table S144. Gene #33: '19p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
19P GAIN MUTATED | 0 | 0 | 0 | 4 |
19P GAIN WILD-TYPE | 114 | 76 | 46 | 48 |
Figure S144. Get High-res Image Gene #33: '19p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D33V1.png)
P value = 0.0456 (Fisher's exact test), Q value = 0.091
Table S145. Gene #33: '19p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
19P GAIN MUTATED | 0 | 0 | 0 | 4 |
19P GAIN WILD-TYPE | 34 | 96 | 66 | 88 |
Figure S145. Get High-res Image Gene #33: '19p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D33V5.png)
P value = 0.041 (Fisher's exact test), Q value = 0.085
Table S146. Gene #33: '19p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
19P GAIN MUTATED | 2 | 0 | 2 |
19P GAIN WILD-TYPE | 116 | 123 | 45 |
Figure S146. Get High-res Image Gene #33: '19p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D33V6.png)
P value = 0.0016 (Fisher's exact test), Q value = 0.006
Table S147. Gene #34: '19q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
19Q GAIN MUTATED | 0 | 0 | 0 | 4 |
19Q GAIN WILD-TYPE | 114 | 76 | 46 | 48 |
Figure S147. Get High-res Image Gene #34: '19q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D34V1.png)
P value = 0.0453 (Fisher's exact test), Q value = 0.091
Table S148. Gene #34: '19q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
19Q GAIN MUTATED | 0 | 0 | 0 | 4 |
19Q GAIN WILD-TYPE | 34 | 96 | 66 | 88 |
Figure S148. Get High-res Image Gene #34: '19q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D34V5.png)
P value = 0.041 (Fisher's exact test), Q value = 0.085
Table S149. Gene #34: '19q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
19Q GAIN MUTATED | 2 | 0 | 2 |
19Q GAIN WILD-TYPE | 116 | 123 | 45 |
Figure S149. Get High-res Image Gene #34: '19q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D34V6.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00019
Table S150. Gene #35: '20p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
20P GAIN MUTATED | 21 | 31 | 24 | 23 |
20P GAIN WILD-TYPE | 93 | 45 | 22 | 29 |
Figure S150. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D35V1.png)
P value = 0.02 (Fisher's exact test), Q value = 0.046
Table S151. Gene #35: '20p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
20P GAIN MUTATED | 19 | 23 | 50 |
20P GAIN WILD-TYPE | 63 | 48 | 69 |
Figure S151. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D35V2.png)
P value = 0.0252 (Fisher's exact test), Q value = 0.056
Table S152. Gene #35: '20p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
20P GAIN MUTATED | 22 | 35 | 12 |
20P GAIN WILD-TYPE | 53 | 47 | 44 |
Figure S152. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D35V3.png)
P value = 0.00223 (Fisher's exact test), Q value = 0.0079
Table S153. Gene #35: '20p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
20P GAIN MUTATED | 14 | 31 | 18 | 6 |
20P GAIN WILD-TYPE | 25 | 35 | 47 | 37 |
Figure S153. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D35V4.png)
P value = 0.00452 (Fisher's exact test), Q value = 0.014
Table S154. Gene #35: '20p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
20P GAIN MUTATED | 9 | 46 | 22 | 22 |
20P GAIN WILD-TYPE | 25 | 50 | 44 | 70 |
Figure S154. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D35V5.png)
P value = 0.0223 (Fisher's exact test), Q value = 0.051
Table S155. Gene #35: '20p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
20P GAIN MUTATED | 35 | 53 | 11 |
20P GAIN WILD-TYPE | 83 | 70 | 36 |
Figure S155. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D35V6.png)
P value = 0.0328 (Fisher's exact test), Q value = 0.071
Table S156. Gene #35: '20p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
20P GAIN MUTATED | 24 | 48 | 27 |
20P GAIN WILD-TYPE | 65 | 62 | 62 |
Figure S156. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D35V7.png)
P value = 0.00309 (Fisher's exact test), Q value = 0.01
Table S157. Gene #35: '20p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
20P GAIN MUTATED | 34 | 40 | 25 |
20P GAIN WILD-TYPE | 86 | 40 | 63 |
Figure S157. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D35V8.png)
P value = 0.00015 (Fisher's exact test), Q value = 0.00077
Table S158. Gene #36: '20q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
20Q GAIN MUTATED | 23 | 32 | 23 | 23 |
20Q GAIN WILD-TYPE | 91 | 44 | 23 | 29 |
Figure S158. Get High-res Image Gene #36: '20q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D36V1.png)
P value = 0.0211 (Fisher's exact test), Q value = 0.048
Table S159. Gene #36: '20q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
20Q GAIN MUTATED | 19 | 24 | 50 |
20Q GAIN WILD-TYPE | 63 | 47 | 69 |
Figure S159. Get High-res Image Gene #36: '20q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D36V2.png)
P value = 0.00794 (Fisher's exact test), Q value = 0.022
Table S160. Gene #36: '20q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
20Q GAIN MUTATED | 13 | 31 | 19 | 7 |
20Q GAIN WILD-TYPE | 26 | 35 | 46 | 36 |
Figure S160. Get High-res Image Gene #36: '20q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D36V4.png)
P value = 0.0106 (Fisher's exact test), Q value = 0.028
Table S161. Gene #36: '20q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
20Q GAIN MUTATED | 9 | 46 | 22 | 24 |
20Q GAIN WILD-TYPE | 25 | 50 | 44 | 68 |
Figure S161. Get High-res Image Gene #36: '20q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D36V5.png)
P value = 0.0496 (Fisher's exact test), Q value = 0.098
Table S162. Gene #36: '20q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
20Q GAIN MUTATED | 35 | 53 | 13 |
20Q GAIN WILD-TYPE | 83 | 70 | 34 |
Figure S162. Get High-res Image Gene #36: '20q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D36V6.png)
P value = 0.044 (Fisher's exact test), Q value = 0.089
Table S163. Gene #36: '20q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
20Q GAIN MUTATED | 24 | 48 | 29 |
20Q GAIN WILD-TYPE | 65 | 62 | 60 |
Figure S163. Get High-res Image Gene #36: '20q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D36V7.png)
P value = 0.00503 (Fisher's exact test), Q value = 0.015
Table S164. Gene #36: '20q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
20Q GAIN MUTATED | 34 | 40 | 27 |
20Q GAIN WILD-TYPE | 86 | 40 | 61 |
Figure S164. Get High-res Image Gene #36: '20q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D36V8.png)
P value = 0.00871 (Fisher's exact test), Q value = 0.023
Table S165. Gene #38: '22q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
22Q GAIN MUTATED | 0 | 0 | 2 | 3 |
22Q GAIN WILD-TYPE | 114 | 76 | 44 | 49 |
Figure S165. Get High-res Image Gene #38: '22q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D38V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S166. Gene #39: 'xp gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
XP GAIN MUTATED | 6 | 30 | 39 | 12 |
XP GAIN WILD-TYPE | 108 | 46 | 7 | 40 |
Figure S166. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D39V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S167. Gene #39: 'xp gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
XP GAIN MUTATED | 14 | 12 | 54 |
XP GAIN WILD-TYPE | 68 | 59 | 65 |
Figure S167. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D39V2.png)
P value = 0.00296 (Fisher's exact test), Q value = 0.0099
Table S168. Gene #39: 'xp gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
XP GAIN MUTATED | 18 | 25 | 11 | 9 |
XP GAIN WILD-TYPE | 21 | 41 | 54 | 34 |
Figure S168. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D39V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S169. Gene #39: 'xp gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
XP GAIN MUTATED | 8 | 45 | 28 | 6 |
XP GAIN WILD-TYPE | 26 | 51 | 38 | 86 |
Figure S169. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D39V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S170. Gene #39: 'xp gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
XP GAIN MUTATED | 27 | 55 | 5 |
XP GAIN WILD-TYPE | 91 | 68 | 42 |
Figure S170. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D39V6.png)
P value = 0.00978 (Fisher's exact test), Q value = 0.026
Table S171. Gene #39: 'xp gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
XP GAIN MUTATED | 25 | 44 | 18 |
XP GAIN WILD-TYPE | 64 | 66 | 71 |
Figure S171. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D39V7.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00035
Table S172. Gene #39: 'xp gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
XP GAIN MUTATED | 31 | 39 | 17 |
XP GAIN WILD-TYPE | 89 | 41 | 71 |
Figure S172. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D39V8.png)
P value = 0.0019 (Fisher's exact test), Q value = 0.007
Table S173. Gene #39: 'xp gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
XP GAIN MUTATED | 21 | 30 | 9 |
XP GAIN WILD-TYPE | 49 | 51 | 62 |
Figure S173. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D39V9.png)
P value = 0.0039 (Fisher's exact test), Q value = 0.012
Table S174. Gene #39: 'xp gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
XP GAIN MUTATED | 37 | 10 | 3 | 10 |
XP GAIN WILD-TYPE | 66 | 65 | 12 | 19 |
Figure S174. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D39V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S175. Gene #40: 'xq gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
XQ GAIN MUTATED | 7 | 31 | 39 | 14 |
XQ GAIN WILD-TYPE | 107 | 45 | 7 | 38 |
Figure S175. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D40V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00013
Table S176. Gene #40: 'xq gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
XQ GAIN MUTATED | 14 | 14 | 55 |
XQ GAIN WILD-TYPE | 68 | 57 | 64 |
Figure S176. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D40V2.png)
P value = 0.00998 (Fisher's exact test), Q value = 0.026
Table S177. Gene #40: 'xq gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
XQ GAIN MUTATED | 18 | 25 | 13 | 9 |
XQ GAIN WILD-TYPE | 21 | 41 | 52 | 34 |
Figure S177. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D40V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S178. Gene #40: 'xq gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
XQ GAIN MUTATED | 8 | 46 | 28 | 9 |
XQ GAIN WILD-TYPE | 26 | 50 | 38 | 83 |
Figure S178. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D40V5.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00019
Table S179. Gene #40: 'xq gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
XQ GAIN MUTATED | 29 | 56 | 6 |
XQ GAIN WILD-TYPE | 89 | 67 | 41 |
Figure S179. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D40V6.png)
P value = 0.0116 (Fisher's exact test), Q value = 0.03
Table S180. Gene #40: 'xq gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
XQ GAIN MUTATED | 27 | 45 | 19 |
XQ GAIN WILD-TYPE | 62 | 65 | 70 |
Figure S180. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D40V7.png)
P value = 0.00034 (Fisher's exact test), Q value = 0.0015
Table S181. Gene #40: 'xq gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
XQ GAIN MUTATED | 34 | 39 | 18 |
XQ GAIN WILD-TYPE | 86 | 41 | 70 |
Figure S181. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D40V8.png)
P value = 0.00953 (Fisher's exact test), Q value = 0.025
Table S182. Gene #40: 'xq gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
XQ GAIN MUTATED | 21 | 30 | 11 |
XQ GAIN WILD-TYPE | 49 | 51 | 60 |
Figure S182. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D40V9.png)
P value = 0.0174 (Fisher's exact test), Q value = 0.042
Table S183. Gene #40: 'xq gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
XQ GAIN MUTATED | 37 | 12 | 3 | 10 |
XQ GAIN WILD-TYPE | 66 | 63 | 12 | 19 |
Figure S183. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D40V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S184. Gene #41: '1p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
1P LOSS MUTATED | 13 | 0 | 2 | 15 |
1P LOSS WILD-TYPE | 101 | 76 | 44 | 37 |
Figure S184. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D41V1.png)
P value = 0.0313 (Fisher's exact test), Q value = 0.069
Table S185. Gene #41: '1p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
1P LOSS MUTATED | 9 | 13 | 7 |
1P LOSS WILD-TYPE | 73 | 58 | 112 |
Figure S185. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D41V2.png)
P value = 7e-05 (Fisher's exact test), Q value = 4e-04
Table S186. Gene #41: '1p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
1P LOSS MUTATED | 0 | 4 | 5 | 21 |
1P LOSS WILD-TYPE | 34 | 92 | 61 | 71 |
Figure S186. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D41V5.png)
P value = 0.00084 (Fisher's exact test), Q value = 0.0035
Table S187. Gene #41: '1p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
1P LOSS MUTATED | 12 | 6 | 12 |
1P LOSS WILD-TYPE | 106 | 117 | 35 |
Figure S187. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D41V6.png)
P value = 0.00026 (Fisher's exact test), Q value = 0.0012
Table S188. Gene #42: '1q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
1Q LOSS MUTATED | 9 | 0 | 2 | 10 |
1Q LOSS WILD-TYPE | 105 | 76 | 44 | 42 |
Figure S188. Get High-res Image Gene #42: '1q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D42V1.png)
P value = 0.00814 (Fisher's exact test), Q value = 0.022
Table S189. Gene #42: '1q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
1Q LOSS MUTATED | 6 | 6 | 9 |
1Q LOSS WILD-TYPE | 112 | 117 | 38 |
Figure S189. Get High-res Image Gene #42: '1q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D42V6.png)
P value = 0.013 (Fisher's exact test), Q value = 0.032
Table S190. Gene #42: '1q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
1Q LOSS MUTATED | 5 | 12 | 4 |
1Q LOSS WILD-TYPE | 115 | 68 | 84 |
Figure S190. Get High-res Image Gene #42: '1q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D42V8.png)
P value = 0.00992 (Fisher's exact test), Q value = 0.026
Table S191. Gene #43: '2p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
2P LOSS MUTATED | 1 | 4 | 0 |
2P LOSS WILD-TYPE | 81 | 67 | 119 |
Figure S191. Get High-res Image Gene #43: '2p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D43V2.png)
P value = 0.017 (Fisher's exact test), Q value = 0.041
Table S192. Gene #43: '2p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
2P LOSS MUTATED | 0 | 0 | 3 |
2P LOSS WILD-TYPE | 75 | 82 | 53 |
Figure S192. Get High-res Image Gene #43: '2p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D43V3.png)
P value = 0.0162 (Fisher's exact test), Q value = 0.039
Table S193. Gene #43: '2p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
2P LOSS MUTATED | 0 | 0 | 0 | 5 |
2P LOSS WILD-TYPE | 34 | 96 | 66 | 87 |
Figure S193. Get High-res Image Gene #43: '2p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D43V5.png)
P value = 0.0361 (Fisher's exact test), Q value = 0.076
Table S194. Gene #44: '2q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
2Q LOSS MUTATED | 1 | 0 | 2 |
2Q LOSS WILD-TYPE | 117 | 123 | 45 |
Figure S194. Get High-res Image Gene #44: '2q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D44V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S195. Gene #45: '3p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
3P LOSS MUTATED | 5 | 0 | 0 | 17 |
3P LOSS WILD-TYPE | 109 | 76 | 46 | 35 |
Figure S195. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D45V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S196. Gene #45: '3p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
3P LOSS MUTATED | 5 | 15 | 1 |
3P LOSS WILD-TYPE | 77 | 56 | 118 |
Figure S196. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D45V2.png)
P value = 0.0319 (Fisher's exact test), Q value = 0.07
Table S197. Gene #45: '3p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
3P LOSS MUTATED | 3 | 3 | 11 | 1 |
3P LOSS WILD-TYPE | 36 | 63 | 54 | 42 |
Figure S197. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D45V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S198. Gene #45: '3p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
3P LOSS MUTATED | 0 | 0 | 4 | 18 |
3P LOSS WILD-TYPE | 34 | 96 | 62 | 74 |
Figure S198. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D45V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S199. Gene #45: '3p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
3P LOSS MUTATED | 18 | 0 | 4 |
3P LOSS WILD-TYPE | 100 | 123 | 43 |
Figure S199. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D45V6.png)
P value = 0.00094 (Fisher's exact test), Q value = 0.0038
Table S200. Gene #45: '3p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
3P LOSS MUTATED | 5 | 16 | 1 | 0 |
3P LOSS WILD-TYPE | 98 | 59 | 14 | 29 |
Figure S200. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D45V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S201. Gene #46: '3q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
3Q LOSS MUTATED | 0 | 0 | 0 | 7 |
3Q LOSS WILD-TYPE | 114 | 76 | 46 | 45 |
Figure S201. Get High-res Image Gene #46: '3q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D46V1.png)
P value = 0.00183 (Fisher's exact test), Q value = 0.0068
Table S202. Gene #46: '3q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
3Q LOSS MUTATED | 0 | 6 | 1 |
3Q LOSS WILD-TYPE | 82 | 65 | 118 |
Figure S202. Get High-res Image Gene #46: '3q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D46V2.png)
P value = 0.0219 (Fisher's exact test), Q value = 0.05
Table S203. Gene #46: '3q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
3Q LOSS MUTATED | 0 | 0 | 1 | 6 |
3Q LOSS WILD-TYPE | 34 | 96 | 65 | 86 |
Figure S203. Get High-res Image Gene #46: '3q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D46V5.png)
P value = 0.00298 (Fisher's exact test), Q value = 0.0099
Table S204. Gene #46: '3q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
3Q LOSS MUTATED | 3 | 0 | 4 |
3Q LOSS WILD-TYPE | 115 | 123 | 43 |
Figure S204. Get High-res Image Gene #46: '3q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D46V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S205. Gene #47: '4p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
4P LOSS MUTATED | 6 | 0 | 0 | 19 |
4P LOSS WILD-TYPE | 108 | 76 | 46 | 33 |
Figure S205. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D47V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S206. Gene #47: '4p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
4P LOSS MUTATED | 5 | 18 | 1 |
4P LOSS WILD-TYPE | 77 | 53 | 118 |
Figure S206. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D47V2.png)
P value = 0.00084 (Fisher's exact test), Q value = 0.0035
Table S207. Gene #47: '4p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
4P LOSS MUTATED | 2 | 3 | 15 | 1 |
4P LOSS WILD-TYPE | 37 | 63 | 50 | 42 |
Figure S207. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D47V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S208. Gene #47: '4p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
4P LOSS MUTATED | 0 | 0 | 1 | 24 |
4P LOSS WILD-TYPE | 34 | 96 | 65 | 68 |
Figure S208. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D47V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S209. Gene #47: '4p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
4P LOSS MUTATED | 12 | 1 | 12 |
4P LOSS WILD-TYPE | 106 | 122 | 35 |
Figure S209. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D47V6.png)
P value = 0.0058 (Fisher's exact test), Q value = 0.017
Table S210. Gene #47: '4p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
4P LOSS MUTATED | 5 | 2 | 12 |
4P LOSS WILD-TYPE | 65 | 79 | 59 |
Figure S210. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D47V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S211. Gene #47: '4p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
4P LOSS MUTATED | 4 | 7 | 8 | 0 |
4P LOSS WILD-TYPE | 99 | 68 | 7 | 29 |
Figure S211. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D47V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S212. Gene #48: '4q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
4Q LOSS MUTATED | 6 | 0 | 0 | 20 |
4Q LOSS WILD-TYPE | 108 | 76 | 46 | 32 |
Figure S212. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D48V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S213. Gene #48: '4q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
4Q LOSS MUTATED | 5 | 19 | 1 |
4Q LOSS WILD-TYPE | 77 | 52 | 118 |
Figure S213. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D48V2.png)
P value = 0.00361 (Fisher's exact test), Q value = 0.012
Table S214. Gene #48: '4q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
4Q LOSS MUTATED | 2 | 4 | 14 | 1 |
4Q LOSS WILD-TYPE | 37 | 62 | 51 | 42 |
Figure S214. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D48V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S215. Gene #48: '4q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
4Q LOSS MUTATED | 0 | 0 | 1 | 25 |
4Q LOSS WILD-TYPE | 34 | 96 | 65 | 67 |
Figure S215. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D48V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S216. Gene #48: '4q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
4Q LOSS MUTATED | 14 | 1 | 11 |
4Q LOSS WILD-TYPE | 104 | 122 | 36 |
Figure S216. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D48V6.png)
P value = 0.00724 (Fisher's exact test), Q value = 0.02
Table S217. Gene #48: '4q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
4Q LOSS MUTATED | 6 | 2 | 12 |
4Q LOSS WILD-TYPE | 64 | 79 | 59 |
Figure S217. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D48V9.png)
P value = 5e-05 (Fisher's exact test), Q value = 3e-04
Table S218. Gene #48: '4q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
4Q LOSS MUTATED | 4 | 9 | 7 | 0 |
4Q LOSS WILD-TYPE | 99 | 66 | 8 | 29 |
Figure S218. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D48V10.png)
P value = 0.0485 (Fisher's exact test), Q value = 0.096
Table S219. Gene #49: '5p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
5P LOSS MUTATED | 2 | 5 | 1 |
5P LOSS WILD-TYPE | 80 | 66 | 118 |
Figure S219. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D49V2.png)
P value = 0.0298 (Fisher's exact test), Q value = 0.066
Table S220. Gene #49: '5p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
5P LOSS MUTATED | 1 | 0 | 1 | 6 |
5P LOSS WILD-TYPE | 33 | 96 | 65 | 86 |
Figure S220. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D49V5.png)
P value = 0.00032 (Fisher's exact test), Q value = 0.0015
Table S221. Gene #49: '5p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
5P LOSS MUTATED | 1 | 1 | 6 |
5P LOSS WILD-TYPE | 117 | 122 | 41 |
Figure S221. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D49V6.png)
P value = 0.0391 (Fisher's exact test), Q value = 0.082
Table S222. Gene #49: '5p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
5P LOSS MUTATED | 1 | 1 | 6 |
5P LOSS WILD-TYPE | 88 | 109 | 83 |
Figure S222. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D49V7.png)
P value = 0.0234 (Fisher's exact test), Q value = 0.053
Table S223. Gene #49: '5p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
5P LOSS MUTATED | 2 | 0 | 6 |
5P LOSS WILD-TYPE | 118 | 80 | 82 |
Figure S223. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D49V8.png)
P value = 0.0122 (Fisher's exact test), Q value = 0.031
Table S224. Gene #49: '5p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
5P LOSS MUTATED | 2 | 0 | 6 |
5P LOSS WILD-TYPE | 68 | 81 | 65 |
Figure S224. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D49V9.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00035
Table S225. Gene #49: '5p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
5P LOSS MUTATED | 1 | 2 | 5 | 0 |
5P LOSS WILD-TYPE | 102 | 73 | 10 | 29 |
Figure S225. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D49V10.png)
P value = 0.0486 (Fisher's exact test), Q value = 0.096
Table S226. Gene #50: '5q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
5Q LOSS MUTATED | 2 | 5 | 1 |
5Q LOSS WILD-TYPE | 80 | 66 | 118 |
Figure S226. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D50V2.png)
P value = 0.0288 (Fisher's exact test), Q value = 0.064
Table S227. Gene #50: '5q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
5Q LOSS MUTATED | 1 | 0 | 1 | 6 |
5Q LOSS WILD-TYPE | 33 | 96 | 65 | 86 |
Figure S227. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D50V5.png)
P value = 0.00031 (Fisher's exact test), Q value = 0.0014
Table S228. Gene #50: '5q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
5Q LOSS MUTATED | 1 | 1 | 6 |
5Q LOSS WILD-TYPE | 117 | 122 | 41 |
Figure S228. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D50V6.png)
P value = 0.0393 (Fisher's exact test), Q value = 0.082
Table S229. Gene #50: '5q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
5Q LOSS MUTATED | 1 | 1 | 6 |
5Q LOSS WILD-TYPE | 88 | 109 | 83 |
Figure S229. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D50V7.png)
P value = 0.0234 (Fisher's exact test), Q value = 0.053
Table S230. Gene #50: '5q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
5Q LOSS MUTATED | 2 | 0 | 6 |
5Q LOSS WILD-TYPE | 118 | 80 | 82 |
Figure S230. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D50V8.png)
P value = 0.0119 (Fisher's exact test), Q value = 0.03
Table S231. Gene #50: '5q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
5Q LOSS MUTATED | 2 | 0 | 6 |
5Q LOSS WILD-TYPE | 68 | 81 | 65 |
Figure S231. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D50V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S232. Gene #50: '5q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
5Q LOSS MUTATED | 1 | 1 | 6 | 0 |
5Q LOSS WILD-TYPE | 102 | 74 | 9 | 29 |
Figure S232. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D50V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S233. Gene #51: '6p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
6P LOSS MUTATED | 6 | 0 | 1 | 14 |
6P LOSS WILD-TYPE | 108 | 76 | 45 | 38 |
Figure S233. Get High-res Image Gene #51: '6p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D51V1.png)
P value = 0.0444 (Fisher's exact test), Q value = 0.089
Table S234. Gene #51: '6p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
6P LOSS MUTATED | 5 | 10 | 5 |
6P LOSS WILD-TYPE | 77 | 61 | 114 |
Figure S234. Get High-res Image Gene #51: '6p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D51V2.png)
P value = 0.0414 (Fisher's exact test), Q value = 0.085
Table S235. Gene #51: '6p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
6P LOSS MUTATED | 2 | 5 | 9 | 0 |
6P LOSS WILD-TYPE | 37 | 61 | 56 | 43 |
Figure S235. Get High-res Image Gene #51: '6p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D51V4.png)
P value = 0.00635 (Fisher's exact test), Q value = 0.018
Table S236. Gene #51: '6p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
6P LOSS MUTATED | 0 | 4 | 3 | 14 |
6P LOSS WILD-TYPE | 34 | 92 | 63 | 78 |
Figure S236. Get High-res Image Gene #51: '6p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D51V5.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.00094
Table S237. Gene #51: '6p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
6P LOSS MUTATED | 6 | 4 | 11 |
6P LOSS WILD-TYPE | 112 | 119 | 36 |
Figure S237. Get High-res Image Gene #51: '6p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D51V6.png)
P value = 0.0189 (Fisher's exact test), Q value = 0.044
Table S238. Gene #51: '6p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
6P LOSS MUTATED | 2 | 14 | 5 |
6P LOSS WILD-TYPE | 87 | 96 | 84 |
Figure S238. Get High-res Image Gene #51: '6p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D51V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S239. Gene #52: '6q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
6Q LOSS MUTATED | 7 | 0 | 1 | 18 |
6Q LOSS WILD-TYPE | 107 | 76 | 45 | 34 |
Figure S239. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D52V1.png)
P value = 0.00241 (Fisher's exact test), Q value = 0.0084
Table S240. Gene #52: '6q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
6Q LOSS MUTATED | 8 | 13 | 4 |
6Q LOSS WILD-TYPE | 74 | 58 | 115 |
Figure S240. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D52V2.png)
P value = 0.0416 (Fisher's exact test), Q value = 0.085
Table S241. Gene #52: '6q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
6Q LOSS MUTATED | 3 | 5 | 12 | 1 |
6Q LOSS WILD-TYPE | 36 | 61 | 53 | 42 |
Figure S241. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D52V4.png)
P value = 0.00016 (Fisher's exact test), Q value = 0.00081
Table S242. Gene #52: '6q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
6Q LOSS MUTATED | 0 | 3 | 5 | 18 |
6Q LOSS WILD-TYPE | 34 | 93 | 61 | 74 |
Figure S242. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D52V5.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00019
Table S243. Gene #52: '6q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
6Q LOSS MUTATED | 11 | 3 | 12 |
6Q LOSS WILD-TYPE | 107 | 120 | 35 |
Figure S243. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D52V6.png)
P value = 0.00154 (Fisher's exact test), Q value = 0.0059
Table S244. Gene #53: '8p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
8P LOSS MUTATED | 5 | 2 | 0 | 9 |
8P LOSS WILD-TYPE | 109 | 74 | 46 | 43 |
Figure S244. Get High-res Image Gene #53: '8p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D53V1.png)
P value = 0.00462 (Fisher's exact test), Q value = 0.014
Table S245. Gene #53: '8p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
8P LOSS MUTATED | 1 | 2 | 1 | 12 |
8P LOSS WILD-TYPE | 33 | 94 | 65 | 80 |
Figure S245. Get High-res Image Gene #53: '8p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D53V5.png)
P value = 0.00919 (Fisher's exact test), Q value = 0.025
Table S246. Gene #53: '8p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
8P LOSS MUTATED | 6 | 3 | 7 |
8P LOSS WILD-TYPE | 112 | 120 | 40 |
Figure S246. Get High-res Image Gene #53: '8p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D53V6.png)
P value = 0.00248 (Fisher's exact test), Q value = 0.0086
Table S247. Gene #54: '8q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
8Q LOSS MUTATED | 3 | 0 | 0 | 6 |
8Q LOSS WILD-TYPE | 111 | 76 | 46 | 46 |
Figure S247. Get High-res Image Gene #54: '8q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D54V1.png)
P value = 0.0121 (Fisher's exact test), Q value = 0.031
Table S248. Gene #54: '8q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
8Q LOSS MUTATED | 1 | 0 | 1 | 7 |
8Q LOSS WILD-TYPE | 33 | 96 | 65 | 85 |
Figure S248. Get High-res Image Gene #54: '8q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D54V5.png)
P value = 0.00059 (Fisher's exact test), Q value = 0.0026
Table S249. Gene #54: '8q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
8Q LOSS MUTATED | 2 | 1 | 6 |
8Q LOSS WILD-TYPE | 116 | 122 | 41 |
Figure S249. Get High-res Image Gene #54: '8q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D54V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S250. Gene #55: '9p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
9P LOSS MUTATED | 9 | 0 | 1 | 23 |
9P LOSS WILD-TYPE | 105 | 76 | 45 | 29 |
Figure S250. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D55V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S251. Gene #55: '9p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
9P LOSS MUTATED | 11 | 18 | 1 |
9P LOSS WILD-TYPE | 71 | 53 | 118 |
Figure S251. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D55V2.png)
P value = 0.0159 (Fisher's exact test), Q value = 0.038
Table S252. Gene #55: '9p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
9P LOSS MUTATED | 3 | 4 | 15 | 3 |
9P LOSS WILD-TYPE | 36 | 62 | 50 | 40 |
Figure S252. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D55V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S253. Gene #55: '9p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
9P LOSS MUTATED | 1 | 0 | 3 | 29 |
9P LOSS WILD-TYPE | 33 | 96 | 63 | 63 |
Figure S253. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D55V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S254. Gene #55: '9p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
9P LOSS MUTATED | 19 | 0 | 14 |
9P LOSS WILD-TYPE | 99 | 123 | 33 |
Figure S254. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D55V6.png)
P value = 0.00453 (Fisher's exact test), Q value = 0.014
Table S255. Gene #55: '9p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
9P LOSS MUTATED | 3 | 14 | 16 |
9P LOSS WILD-TYPE | 86 | 96 | 73 |
Figure S255. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D55V7.png)
P value = 0.00543 (Fisher's exact test), Q value = 0.016
Table S256. Gene #55: '9p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
9P LOSS MUTATED | 8 | 4 | 16 |
9P LOSS WILD-TYPE | 62 | 77 | 55 |
Figure S256. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D55V9.png)
P value = 0.00141 (Fisher's exact test), Q value = 0.0054
Table S257. Gene #55: '9p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
9P LOSS MUTATED | 8 | 17 | 3 | 0 |
9P LOSS WILD-TYPE | 95 | 58 | 12 | 29 |
Figure S257. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D55V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S258. Gene #56: '9q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
9Q LOSS MUTATED | 11 | 1 | 1 | 21 |
9Q LOSS WILD-TYPE | 103 | 75 | 45 | 31 |
Figure S258. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D56V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S259. Gene #56: '9q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
9Q LOSS MUTATED | 12 | 18 | 1 |
9Q LOSS WILD-TYPE | 70 | 53 | 118 |
Figure S259. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D56V2.png)
P value = 0.0046 (Fisher's exact test), Q value = 0.014
Table S260. Gene #56: '9q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
9Q LOSS MUTATED | 3 | 3 | 16 | 4 |
9Q LOSS WILD-TYPE | 36 | 63 | 49 | 39 |
Figure S260. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D56V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S261. Gene #56: '9q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
9Q LOSS MUTATED | 1 | 0 | 3 | 30 |
9Q LOSS WILD-TYPE | 33 | 96 | 63 | 62 |
Figure S261. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D56V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S262. Gene #56: '9q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
9Q LOSS MUTATED | 17 | 0 | 17 |
9Q LOSS WILD-TYPE | 101 | 123 | 30 |
Figure S262. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D56V6.png)
P value = 0.00295 (Fisher's exact test), Q value = 0.0099
Table S263. Gene #56: '9q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 110 | 89 |
9Q LOSS MUTATED | 3 | 14 | 17 |
9Q LOSS WILD-TYPE | 86 | 96 | 72 |
Figure S263. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D56V7.png)
P value = 0.00107 (Fisher's exact test), Q value = 0.0042
Table S264. Gene #56: '9q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
9Q LOSS MUTATED | 8 | 4 | 18 |
9Q LOSS WILD-TYPE | 62 | 77 | 53 |
Figure S264. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D56V9.png)
P value = 2e-04 (Fisher's exact test), Q value = 0.00097
Table S265. Gene #56: '9q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
9Q LOSS MUTATED | 8 | 16 | 6 | 0 |
9Q LOSS WILD-TYPE | 95 | 59 | 9 | 29 |
Figure S265. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D56V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S266. Gene #57: '10p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
10P LOSS MUTATED | 3 | 0 | 0 | 13 |
10P LOSS WILD-TYPE | 111 | 76 | 46 | 39 |
Figure S266. Get High-res Image Gene #57: '10p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D57V1.png)
P value = 5e-05 (Fisher's exact test), Q value = 3e-04
Table S267. Gene #57: '10p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
10P LOSS MUTATED | 1 | 11 | 2 |
10P LOSS WILD-TYPE | 81 | 60 | 117 |
Figure S267. Get High-res Image Gene #57: '10p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D57V2.png)
P value = 0.00049 (Fisher's exact test), Q value = 0.0021
Table S268. Gene #57: '10p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
10P LOSS MUTATED | 0 | 1 | 2 | 13 |
10P LOSS WILD-TYPE | 34 | 95 | 64 | 79 |
Figure S268. Get High-res Image Gene #57: '10p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D57V5.png)
P value = 0.00296 (Fisher's exact test), Q value = 0.0099
Table S269. Gene #57: '10p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
10P LOSS MUTATED | 10 | 1 | 5 |
10P LOSS WILD-TYPE | 108 | 122 | 42 |
Figure S269. Get High-res Image Gene #57: '10p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D57V6.png)
P value = 0.0186 (Fisher's exact test), Q value = 0.044
Table S270. Gene #57: '10p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
10P LOSS MUTATED | 2 | 1 | 8 |
10P LOSS WILD-TYPE | 68 | 80 | 63 |
Figure S270. Get High-res Image Gene #57: '10p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D57V9.png)
P value = 0.0351 (Fisher's exact test), Q value = 0.075
Table S271. Gene #57: '10p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
10P LOSS MUTATED | 2 | 8 | 1 | 0 |
10P LOSS WILD-TYPE | 101 | 67 | 14 | 29 |
Figure S271. Get High-res Image Gene #57: '10p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D57V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S272. Gene #58: '10q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
10Q LOSS MUTATED | 3 | 0 | 0 | 14 |
10Q LOSS WILD-TYPE | 111 | 76 | 46 | 38 |
Figure S272. Get High-res Image Gene #58: '10q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D58V1.png)
P value = 0.00013 (Fisher's exact test), Q value = 0.00067
Table S273. Gene #58: '10q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
10Q LOSS MUTATED | 2 | 12 | 2 |
10Q LOSS WILD-TYPE | 80 | 59 | 117 |
Figure S273. Get High-res Image Gene #58: '10q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D58V2.png)
P value = 0.0472 (Fisher's exact test), Q value = 0.094
Table S274. Gene #58: '10q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
10Q LOSS MUTATED | 1 | 4 | 8 | 0 |
10Q LOSS WILD-TYPE | 38 | 62 | 57 | 43 |
Figure S274. Get High-res Image Gene #58: '10q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D58V4.png)
P value = 0.00013 (Fisher's exact test), Q value = 0.00067
Table S275. Gene #58: '10q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
10Q LOSS MUTATED | 0 | 1 | 2 | 14 |
10Q LOSS WILD-TYPE | 34 | 95 | 64 | 78 |
Figure S275. Get High-res Image Gene #58: '10q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D58V5.png)
P value = 0.00207 (Fisher's exact test), Q value = 0.0075
Table S276. Gene #58: '10q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
10Q LOSS MUTATED | 12 | 1 | 4 |
10Q LOSS WILD-TYPE | 106 | 122 | 43 |
Figure S276. Get High-res Image Gene #58: '10q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D58V6.png)
P value = 0.00154 (Fisher's exact test), Q value = 0.0059
Table S277. Gene #58: '10q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
10Q LOSS MUTATED | 2 | 1 | 10 |
10Q LOSS WILD-TYPE | 68 | 80 | 61 |
Figure S277. Get High-res Image Gene #58: '10q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D58V9.png)
P value = 0.00698 (Fisher's exact test), Q value = 0.019
Table S278. Gene #58: '10q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
10Q LOSS MUTATED | 2 | 10 | 1 | 0 |
10Q LOSS WILD-TYPE | 101 | 65 | 14 | 29 |
Figure S278. Get High-res Image Gene #58: '10q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D58V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00013
Table S279. Gene #59: '11p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
11P LOSS MUTATED | 5 | 1 | 0 | 12 |
11P LOSS WILD-TYPE | 109 | 75 | 46 | 40 |
Figure S279. Get High-res Image Gene #59: '11p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D59V1.png)
P value = 0.00073 (Fisher's exact test), Q value = 0.0031
Table S280. Gene #59: '11p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
11P LOSS MUTATED | 4 | 11 | 2 |
11P LOSS WILD-TYPE | 78 | 60 | 117 |
Figure S280. Get High-res Image Gene #59: '11p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D59V2.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00035
Table S281. Gene #59: '11p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
11P LOSS MUTATED | 0 | 1 | 2 | 15 |
11P LOSS WILD-TYPE | 34 | 95 | 64 | 77 |
Figure S281. Get High-res Image Gene #59: '11p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D59V5.png)
P value = 0.00264 (Fisher's exact test), Q value = 0.0091
Table S282. Gene #59: '11p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
11P LOSS MUTATED | 9 | 2 | 7 |
11P LOSS WILD-TYPE | 109 | 121 | 40 |
Figure S282. Get High-res Image Gene #59: '11p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D59V6.png)
P value = 0.0194 (Fisher's exact test), Q value = 0.045
Table S283. Gene #59: '11p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
11P LOSS MUTATED | 4 | 2 | 10 |
11P LOSS WILD-TYPE | 66 | 79 | 61 |
Figure S283. Get High-res Image Gene #59: '11p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D59V9.png)
P value = 0.0139 (Fisher's exact test), Q value = 0.034
Table S284. Gene #59: '11p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
11P LOSS MUTATED | 4 | 9 | 3 | 0 |
11P LOSS WILD-TYPE | 99 | 66 | 12 | 29 |
Figure S284. Get High-res Image Gene #59: '11p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D59V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S285. Gene #60: '11q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
11Q LOSS MUTATED | 5 | 0 | 0 | 16 |
11Q LOSS WILD-TYPE | 109 | 76 | 46 | 36 |
Figure S285. Get High-res Image Gene #60: '11q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D60V1.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00026
Table S286. Gene #60: '11q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
11Q LOSS MUTATED | 5 | 14 | 2 |
11Q LOSS WILD-TYPE | 77 | 57 | 117 |
Figure S286. Get High-res Image Gene #60: '11q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D60V2.png)
P value = 0.0112 (Fisher's exact test), Q value = 0.029
Table S287. Gene #60: '11q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
11Q LOSS MUTATED | 3 | 1 | 11 | 3 |
11Q LOSS WILD-TYPE | 36 | 65 | 54 | 40 |
Figure S287. Get High-res Image Gene #60: '11q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D60V4.png)
P value = 0.00013 (Fisher's exact test), Q value = 0.00067
Table S288. Gene #60: '11q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
11Q LOSS MUTATED | 1 | 1 | 3 | 16 |
11Q LOSS WILD-TYPE | 33 | 95 | 63 | 76 |
Figure S288. Get High-res Image Gene #60: '11q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D60V5.png)
P value = 0.00209 (Fisher's exact test), Q value = 0.0075
Table S289. Gene #60: '11q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
11Q LOSS MUTATED | 13 | 2 | 6 |
11Q LOSS WILD-TYPE | 105 | 121 | 41 |
Figure S289. Get High-res Image Gene #60: '11q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D60V6.png)
P value = 0.0368 (Fisher's exact test), Q value = 0.077
Table S290. Gene #60: '11q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
11Q LOSS MUTATED | 5 | 3 | 11 |
11Q LOSS WILD-TYPE | 65 | 78 | 60 |
Figure S290. Get High-res Image Gene #60: '11q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D60V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S291. Gene #61: '13q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
13Q LOSS MUTATED | 6 | 0 | 1 | 17 |
13Q LOSS WILD-TYPE | 108 | 76 | 45 | 35 |
Figure S291. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D61V1.png)
P value = 5e-05 (Fisher's exact test), Q value = 3e-04
Table S292. Gene #61: '13q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
13Q LOSS MUTATED | 5 | 15 | 3 |
13Q LOSS WILD-TYPE | 77 | 56 | 116 |
Figure S292. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D61V2.png)
P value = 0.00117 (Fisher's exact test), Q value = 0.0046
Table S293. Gene #61: '13q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
13Q LOSS MUTATED | 4 | 2 | 14 | 1 |
13Q LOSS WILD-TYPE | 35 | 64 | 51 | 42 |
Figure S293. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D61V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S294. Gene #61: '13q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
13Q LOSS MUTATED | 0 | 2 | 0 | 22 |
13Q LOSS WILD-TYPE | 34 | 94 | 66 | 70 |
Figure S294. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D61V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S295. Gene #61: '13q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
13Q LOSS MUTATED | 8 | 2 | 14 |
13Q LOSS WILD-TYPE | 110 | 121 | 33 |
Figure S295. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D61V6.png)
P value = 0.011 (Fisher's exact test), Q value = 0.028
Table S296. Gene #61: '13q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
13Q LOSS MUTATED | 4 | 7 | 13 |
13Q LOSS WILD-TYPE | 116 | 73 | 75 |
Figure S296. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D61V8.png)
P value = 0.00409 (Fisher's exact test), Q value = 0.013
Table S297. Gene #61: '13q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
13Q LOSS MUTATED | 3 | 3 | 13 |
13Q LOSS WILD-TYPE | 67 | 78 | 58 |
Figure S297. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D61V9.png)
P value = 5e-05 (Fisher's exact test), Q value = 3e-04
Table S298. Gene #61: '13q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
13Q LOSS MUTATED | 5 | 7 | 7 | 0 |
13Q LOSS WILD-TYPE | 98 | 68 | 8 | 29 |
Figure S298. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D61V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S299. Gene #62: '14q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
14Q LOSS MUTATED | 18 | 0 | 1 | 28 |
14Q LOSS WILD-TYPE | 96 | 76 | 45 | 24 |
Figure S299. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D62V1.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.00059
Table S300. Gene #62: '14q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
14Q LOSS MUTATED | 18 | 18 | 7 |
14Q LOSS WILD-TYPE | 64 | 53 | 112 |
Figure S300. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D62V2.png)
P value = 0.00558 (Fisher's exact test), Q value = 0.016
Table S301. Gene #62: '14q loss' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
14Q LOSS MUTATED | 20 | 8 | 5 |
14Q LOSS WILD-TYPE | 55 | 74 | 51 |
Figure S301. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D62V3.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.00059
Table S302. Gene #62: '14q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
14Q LOSS MUTATED | 7 | 5 | 20 | 1 |
14Q LOSS WILD-TYPE | 32 | 61 | 45 | 42 |
Figure S302. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D62V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S303. Gene #62: '14q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
14Q LOSS MUTATED | 3 | 4 | 9 | 31 |
14Q LOSS WILD-TYPE | 31 | 92 | 57 | 61 |
Figure S303. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D62V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S304. Gene #62: '14q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
14Q LOSS MUTATED | 22 | 6 | 19 |
14Q LOSS WILD-TYPE | 96 | 117 | 28 |
Figure S304. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D62V6.png)
P value = 0.00391 (Fisher's exact test), Q value = 0.012
Table S305. Gene #62: '14q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
14Q LOSS MUTATED | 9 | 7 | 20 |
14Q LOSS WILD-TYPE | 61 | 74 | 51 |
Figure S305. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D62V9.png)
P value = 0.00306 (Fisher's exact test), Q value = 0.01
Table S306. Gene #62: '14q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
14Q LOSS MUTATED | 11 | 20 | 4 | 1 |
14Q LOSS WILD-TYPE | 92 | 55 | 11 | 28 |
Figure S306. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D62V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S307. Gene #63: '15q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
15Q LOSS MUTATED | 11 | 0 | 3 | 17 |
15Q LOSS WILD-TYPE | 103 | 76 | 43 | 35 |
Figure S307. Get High-res Image Gene #63: '15q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D63V1.png)
P value = 0.00219 (Fisher's exact test), Q value = 0.0078
Table S308. Gene #63: '15q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
15Q LOSS MUTATED | 11 | 14 | 5 |
15Q LOSS WILD-TYPE | 71 | 57 | 114 |
Figure S308. Get High-res Image Gene #63: '15q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D63V2.png)
P value = 0.029 (Fisher's exact test), Q value = 0.064
Table S309. Gene #63: '15q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
15Q LOSS MUTATED | 3 | 5 | 15 | 3 |
15Q LOSS WILD-TYPE | 36 | 61 | 50 | 40 |
Figure S309. Get High-res Image Gene #63: '15q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D63V4.png)
P value = 5e-05 (Fisher's exact test), Q value = 3e-04
Table S310. Gene #63: '15q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
15Q LOSS MUTATED | 1 | 3 | 6 | 21 |
15Q LOSS WILD-TYPE | 33 | 93 | 60 | 71 |
Figure S310. Get High-res Image Gene #63: '15q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D63V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S311. Gene #63: '15q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
15Q LOSS MUTATED | 12 | 4 | 15 |
15Q LOSS WILD-TYPE | 106 | 119 | 32 |
Figure S311. Get High-res Image Gene #63: '15q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D63V6.png)
P value = 0.0023 (Fisher's exact test), Q value = 0.0081
Table S312. Gene #63: '15q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
15Q LOSS MUTATED | 10 | 9 | 6 | 0 |
15Q LOSS WILD-TYPE | 93 | 66 | 9 | 29 |
Figure S312. Get High-res Image Gene #63: '15q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D63V10.png)
P value = 0.0429 (Fisher's exact test), Q value = 0.088
Table S313. Gene #64: '16p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
16P LOSS MUTATED | 1 | 0 | 0 | 3 |
16P LOSS WILD-TYPE | 113 | 76 | 46 | 49 |
Figure S313. Get High-res Image Gene #64: '16p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D64V1.png)
P value = 0.0333 (Fisher's exact test), Q value = 0.071
Table S314. Gene #64: '16p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
16P LOSS MUTATED | 1 | 3 | 0 |
16P LOSS WILD-TYPE | 81 | 68 | 119 |
Figure S314. Get High-res Image Gene #64: '16p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D64V2.png)
P value = 0.0443 (Fisher's exact test), Q value = 0.089
Table S315. Gene #64: '16p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
16P LOSS MUTATED | 0 | 0 | 0 | 4 |
16P LOSS WILD-TYPE | 34 | 96 | 66 | 88 |
Figure S315. Get High-res Image Gene #64: '16p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D64V5.png)
P value = 0.00767 (Fisher's exact test), Q value = 0.021
Table S316. Gene #64: '16p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
16P LOSS MUTATED | 1 | 0 | 3 |
16P LOSS WILD-TYPE | 117 | 123 | 44 |
Figure S316. Get High-res Image Gene #64: '16p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D64V6.png)
P value = 0.0097 (Fisher's exact test), Q value = 0.026
Table S317. Gene #64: '16p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
16P LOSS MUTATED | 0 | 2 | 2 | 0 |
16P LOSS WILD-TYPE | 103 | 73 | 13 | 29 |
Figure S317. Get High-res Image Gene #64: '16p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D64V10.png)
P value = 0.00036 (Fisher's exact test), Q value = 0.0016
Table S318. Gene #65: '16q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
16Q LOSS MUTATED | 1 | 0 | 0 | 6 |
16Q LOSS WILD-TYPE | 113 | 76 | 46 | 46 |
Figure S318. Get High-res Image Gene #65: '16q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D65V1.png)
P value = 0.00738 (Fisher's exact test), Q value = 0.02
Table S319. Gene #65: '16q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
16Q LOSS MUTATED | 2 | 5 | 0 |
16Q LOSS WILD-TYPE | 80 | 66 | 119 |
Figure S319. Get High-res Image Gene #65: '16q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D65V2.png)
P value = 0.00215 (Fisher's exact test), Q value = 0.0077
Table S320. Gene #65: '16q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
16Q LOSS MUTATED | 0 | 0 | 0 | 7 |
16Q LOSS WILD-TYPE | 34 | 96 | 66 | 85 |
Figure S320. Get High-res Image Gene #65: '16q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D65V5.png)
P value = 0.0128 (Fisher's exact test), Q value = 0.032
Table S321. Gene #65: '16q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
16Q LOSS MUTATED | 4 | 0 | 3 |
16Q LOSS WILD-TYPE | 114 | 123 | 44 |
Figure S321. Get High-res Image Gene #65: '16q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D65V6.png)
P value = 0.0327 (Fisher's exact test), Q value = 0.071
Table S322. Gene #65: '16q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
16Q LOSS MUTATED | 2 | 0 | 5 |
16Q LOSS WILD-TYPE | 68 | 81 | 66 |
Figure S322. Get High-res Image Gene #65: '16q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D65V9.png)
P value = 0.0364 (Fisher's exact test), Q value = 0.076
Table S323. Gene #65: '16q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
16Q LOSS MUTATED | 1 | 4 | 2 | 0 |
16Q LOSS WILD-TYPE | 102 | 71 | 13 | 29 |
Figure S323. Get High-res Image Gene #65: '16q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D65V10.png)
P value = 0.00412 (Fisher's exact test), Q value = 0.013
Table S324. Gene #66: '17p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
17P LOSS MUTATED | 6 | 0 | 0 | 6 |
17P LOSS WILD-TYPE | 108 | 76 | 46 | 46 |
Figure S324. Get High-res Image Gene #66: '17p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D66V1.png)
P value = 0.00032 (Fisher's exact test), Q value = 0.0015
Table S325. Gene #66: '17p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
17P LOSS MUTATED | 3 | 8 | 0 |
17P LOSS WILD-TYPE | 79 | 63 | 119 |
Figure S325. Get High-res Image Gene #66: '17p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D66V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S326. Gene #66: '17p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
17P LOSS MUTATED | 0 | 0 | 0 | 12 |
17P LOSS WILD-TYPE | 34 | 96 | 66 | 80 |
Figure S326. Get High-res Image Gene #66: '17p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D66V5.png)
P value = 3e-04 (Fisher's exact test), Q value = 0.0014
Table S327. Gene #66: '17p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
17P LOSS MUTATED | 6 | 0 | 6 |
17P LOSS WILD-TYPE | 112 | 123 | 41 |
Figure S327. Get High-res Image Gene #66: '17p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D66V6.png)
P value = 0.00649 (Fisher's exact test), Q value = 0.018
Table S328. Gene #66: '17p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
17P LOSS MUTATED | 3 | 0 | 7 |
17P LOSS WILD-TYPE | 67 | 81 | 64 |
Figure S328. Get High-res Image Gene #66: '17p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D66V9.png)
P value = 0.00074 (Fisher's exact test), Q value = 0.0031
Table S329. Gene #66: '17p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
17P LOSS MUTATED | 1 | 5 | 4 | 0 |
17P LOSS WILD-TYPE | 102 | 70 | 11 | 29 |
Figure S329. Get High-res Image Gene #66: '17p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D66V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S330. Gene #67: '18p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
18P LOSS MUTATED | 17 | 5 | 1 | 19 |
18P LOSS WILD-TYPE | 97 | 71 | 45 | 33 |
Figure S330. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D67V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S331. Gene #67: '18p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
18P LOSS MUTATED | 11 | 23 | 6 |
18P LOSS WILD-TYPE | 71 | 48 | 113 |
Figure S331. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D67V2.png)
P value = 0.00231 (Fisher's exact test), Q value = 0.0081
Table S332. Gene #67: '18p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
18P LOSS MUTATED | 15 | 4 | 13 |
18P LOSS WILD-TYPE | 60 | 78 | 43 |
Figure S332. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D67V3.png)
P value = 0.00535 (Fisher's exact test), Q value = 0.016
Table S333. Gene #67: '18p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
18P LOSS MUTATED | 5 | 3 | 17 | 7 |
18P LOSS WILD-TYPE | 34 | 63 | 48 | 36 |
Figure S333. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D67V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S334. Gene #67: '18p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
18P LOSS MUTATED | 2 | 2 | 7 | 31 |
18P LOSS WILD-TYPE | 32 | 94 | 59 | 61 |
Figure S334. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D67V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S335. Gene #67: '18p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
18P LOSS MUTATED | 24 | 3 | 15 |
18P LOSS WILD-TYPE | 94 | 120 | 32 |
Figure S335. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D67V6.png)
P value = 0.00107 (Fisher's exact test), Q value = 0.0042
Table S336. Gene #67: '18p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
18P LOSS MUTATED | 19 | 3 | 20 |
18P LOSS WILD-TYPE | 101 | 77 | 68 |
Figure S336. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D67V8.png)
P value = 0.0195 (Fisher's exact test), Q value = 0.045
Table S337. Gene #67: '18p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
18P LOSS MUTATED | 10 | 8 | 19 |
18P LOSS WILD-TYPE | 60 | 73 | 52 |
Figure S337. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D67V9.png)
P value = 0.00039 (Fisher's exact test), Q value = 0.0017
Table S338. Gene #67: '18p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
18P LOSS MUTATED | 11 | 18 | 7 | 1 |
18P LOSS WILD-TYPE | 92 | 57 | 8 | 28 |
Figure S338. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D67V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S339. Gene #68: '18q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
18Q LOSS MUTATED | 18 | 4 | 1 | 22 |
18Q LOSS WILD-TYPE | 96 | 72 | 45 | 30 |
Figure S339. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D68V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S340. Gene #68: '18q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
18Q LOSS MUTATED | 12 | 26 | 5 |
18Q LOSS WILD-TYPE | 70 | 45 | 114 |
Figure S340. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D68V2.png)
P value = 0.00478 (Fisher's exact test), Q value = 0.014
Table S341. Gene #68: '18q loss' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
18Q LOSS MUTATED | 16 | 5 | 13 |
18Q LOSS WILD-TYPE | 59 | 77 | 43 |
Figure S341. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D68V3.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00054
Table S342. Gene #68: '18q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
18Q LOSS MUTATED | 5 | 2 | 20 | 7 |
18Q LOSS WILD-TYPE | 34 | 64 | 45 | 36 |
Figure S342. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D68V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S343. Gene #68: '18q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
18Q LOSS MUTATED | 2 | 1 | 7 | 35 |
18Q LOSS WILD-TYPE | 32 | 95 | 59 | 57 |
Figure S343. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D68V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S344. Gene #68: '18q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
18Q LOSS MUTATED | 28 | 3 | 14 |
18Q LOSS WILD-TYPE | 90 | 120 | 33 |
Figure S344. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D68V6.png)
P value = 0.00038 (Fisher's exact test), Q value = 0.0017
Table S345. Gene #68: '18q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
18Q LOSS MUTATED | 21 | 3 | 21 |
18Q LOSS WILD-TYPE | 99 | 77 | 67 |
Figure S345. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D68V8.png)
P value = 0.00686 (Fisher's exact test), Q value = 0.019
Table S346. Gene #68: '18q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
18Q LOSS MUTATED | 11 | 8 | 21 |
18Q LOSS WILD-TYPE | 59 | 73 | 50 |
Figure S346. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D68V9.png)
P value = 0.00013 (Fisher's exact test), Q value = 0.00067
Table S347. Gene #68: '18q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
18Q LOSS MUTATED | 11 | 21 | 7 | 1 |
18Q LOSS WILD-TYPE | 92 | 54 | 8 | 28 |
Figure S347. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D68V10.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00045
Table S348. Gene #69: '19p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
19P LOSS MUTATED | 3 | 2 | 1 | 11 |
19P LOSS WILD-TYPE | 111 | 74 | 45 | 41 |
Figure S348. Get High-res Image Gene #69: '19p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D69V1.png)
P value = 0.00217 (Fisher's exact test), Q value = 0.0078
Table S349. Gene #69: '19p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
19P LOSS MUTATED | 3 | 11 | 3 |
19P LOSS WILD-TYPE | 79 | 60 | 116 |
Figure S349. Get High-res Image Gene #69: '19p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D69V2.png)
P value = 0.00492 (Fisher's exact test), Q value = 0.015
Table S350. Gene #69: '19p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
19P LOSS MUTATED | 0 | 1 | 6 | 10 |
19P LOSS WILD-TYPE | 34 | 95 | 60 | 82 |
Figure S350. Get High-res Image Gene #69: '19p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D69V5.png)
P value = 0.00636 (Fisher's exact test), Q value = 0.018
Table S351. Gene #69: '19p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
19P LOSS MUTATED | 13 | 2 | 2 |
19P LOSS WILD-TYPE | 105 | 121 | 45 |
Figure S351. Get High-res Image Gene #69: '19p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D69V6.png)
P value = 0.013 (Fisher's exact test), Q value = 0.032
Table S352. Gene #69: '19p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
19P LOSS MUTATED | 4 | 11 | 0 | 0 |
19P LOSS WILD-TYPE | 99 | 64 | 15 | 29 |
Figure S352. Get High-res Image Gene #69: '19p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D69V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00013
Table S353. Gene #70: '19q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
19Q LOSS MUTATED | 1 | 2 | 1 | 12 |
19Q LOSS WILD-TYPE | 113 | 74 | 45 | 40 |
Figure S353. Get High-res Image Gene #70: '19q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D70V1.png)
P value = 0.00467 (Fisher's exact test), Q value = 0.014
Table S354. Gene #70: '19q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
19Q LOSS MUTATED | 3 | 10 | 3 |
19Q LOSS WILD-TYPE | 79 | 61 | 116 |
Figure S354. Get High-res Image Gene #70: '19q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D70V2.png)
P value = 0.0049 (Fisher's exact test), Q value = 0.015
Table S355. Gene #70: '19q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
19Q LOSS MUTATED | 0 | 1 | 4 | 11 |
19Q LOSS WILD-TYPE | 34 | 95 | 62 | 81 |
Figure S355. Get High-res Image Gene #70: '19q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D70V5.png)
P value = 0.0226 (Fisher's exact test), Q value = 0.051
Table S356. Gene #70: '19q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
19Q LOSS MUTATED | 11 | 2 | 3 |
19Q LOSS WILD-TYPE | 107 | 121 | 44 |
Figure S356. Get High-res Image Gene #70: '19q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D70V6.png)
P value = 0.00062 (Fisher's exact test), Q value = 0.0027
Table S357. Gene #71: '21q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
21Q LOSS MUTATED | 12 | 6 | 7 | 18 |
21Q LOSS WILD-TYPE | 102 | 70 | 39 | 34 |
Figure S357. Get High-res Image Gene #71: '21q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D71V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S358. Gene #72: '22q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
22Q LOSS MUTATED | 22 | 5 | 2 | 31 |
22Q LOSS WILD-TYPE | 92 | 71 | 44 | 21 |
Figure S358. Get High-res Image Gene #72: '22q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D72V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S359. Gene #72: '22q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
22Q LOSS MUTATED | 13 | 34 | 10 |
22Q LOSS WILD-TYPE | 69 | 37 | 109 |
Figure S359. Get High-res Image Gene #72: '22q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D72V2.png)
P value = 0.014 (Fisher's exact test), Q value = 0.034
Table S360. Gene #72: '22q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
22Q LOSS MUTATED | 4 | 11 | 23 | 10 |
22Q LOSS WILD-TYPE | 35 | 55 | 42 | 33 |
Figure S360. Get High-res Image Gene #72: '22q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D72V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S361. Gene #72: '22q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
22Q LOSS MUTATED | 0 | 6 | 12 | 42 |
22Q LOSS WILD-TYPE | 34 | 90 | 54 | 50 |
Figure S361. Get High-res Image Gene #72: '22q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D72V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S362. Gene #72: '22q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
22Q LOSS MUTATED | 35 | 8 | 17 |
22Q LOSS WILD-TYPE | 83 | 115 | 30 |
Figure S362. Get High-res Image Gene #72: '22q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D72V6.png)
P value = 0.00519 (Fisher's exact test), Q value = 0.015
Table S363. Gene #72: '22q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
22Q LOSS MUTATED | 20 | 22 | 6 | 1 |
22Q LOSS WILD-TYPE | 83 | 53 | 9 | 28 |
Figure S363. Get High-res Image Gene #72: '22q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D72V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S364. Gene #73: 'xp loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
XP LOSS MUTATED | 10 | 2 | 2 | 20 |
XP LOSS WILD-TYPE | 104 | 74 | 44 | 32 |
Figure S364. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D73V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S365. Gene #73: 'xp loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
XP LOSS MUTATED | 8 | 19 | 4 |
XP LOSS WILD-TYPE | 74 | 52 | 115 |
Figure S365. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D73V2.png)
P value = 0.00321 (Fisher's exact test), Q value = 0.011
Table S366. Gene #73: 'xp loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
XP LOSS MUTATED | 1 | 6 | 14 | 1 |
XP LOSS WILD-TYPE | 38 | 60 | 51 | 42 |
Figure S366. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D73V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S367. Gene #73: 'xp loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
XP LOSS MUTATED | 0 | 3 | 4 | 27 |
XP LOSS WILD-TYPE | 34 | 93 | 62 | 65 |
Figure S367. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D73V5.png)
P value = 7e-05 (Fisher's exact test), Q value = 4e-04
Table S368. Gene #73: 'xp loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
XP LOSS MUTATED | 19 | 4 | 11 |
XP LOSS WILD-TYPE | 99 | 119 | 36 |
Figure S368. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D73V6.png)
P value = 0.0179 (Fisher's exact test), Q value = 0.042
Table S369. Gene #73: 'xp loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 70 | 81 | 71 |
XP LOSS MUTATED | 8 | 4 | 14 |
XP LOSS WILD-TYPE | 62 | 77 | 57 |
Figure S369. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D73V9.png)
P value = 0.00077 (Fisher's exact test), Q value = 0.0032
Table S370. Gene #73: 'xp loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
XP LOSS MUTATED | 5 | 17 | 3 | 1 |
XP LOSS WILD-TYPE | 98 | 58 | 12 | 28 |
Figure S370. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D73V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S371. Gene #74: 'xq loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
XQ LOSS MUTATED | 9 | 1 | 2 | 18 |
XQ LOSS WILD-TYPE | 105 | 75 | 44 | 34 |
Figure S371. Get High-res Image Gene #74: 'xq loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D74V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00013
Table S372. Gene #74: 'xq loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
XQ LOSS MUTATED | 8 | 17 | 3 |
XQ LOSS WILD-TYPE | 74 | 54 | 116 |
Figure S372. Get High-res Image Gene #74: 'xq loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D74V2.png)
P value = 0.0141 (Fisher's exact test), Q value = 0.034
Table S373. Gene #74: 'xq loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
XQ LOSS MUTATED | 1 | 6 | 12 | 1 |
XQ LOSS WILD-TYPE | 38 | 60 | 53 | 42 |
Figure S373. Get High-res Image Gene #74: 'xq loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D74V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 7.3e-05
Table S374. Gene #74: 'xq loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
XQ LOSS MUTATED | 0 | 2 | 4 | 24 |
XQ LOSS WILD-TYPE | 34 | 94 | 62 | 68 |
Figure S374. Get High-res Image Gene #74: 'xq loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D74V5.png)
P value = 9e-05 (Fisher's exact test), Q value = 5e-04
Table S375. Gene #74: 'xq loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
XQ LOSS MUTATED | 17 | 3 | 10 |
XQ LOSS WILD-TYPE | 101 | 120 | 37 |
Figure S375. Get High-res Image Gene #74: 'xq loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D74V6.png)
P value = 0.0032 (Fisher's exact test), Q value = 0.011
Table S376. Gene #74: 'xq loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 103 | 75 | 15 | 29 |
XQ LOSS MUTATED | 5 | 15 | 3 | 1 |
XQ LOSS WILD-TYPE | 98 | 60 | 12 | 28 |
Figure S376. Get High-res Image Gene #74: 'xq loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D74V10.png)
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/19781623/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRP-TP/20139337/KIRP-TP.transferedmergedcluster.txt
-
Number of patients = 288
-
Number of significantly arm-level cnvs = 74
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.