This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and selected clinical features.
Testing the association between copy number variation 80 arm-level events and 11 clinical features across 491 patients, 316 significant findings detected with Q value < 0.25.
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1p gain cnv correlated to 'PATHOLOGY_T_STAGE', 'RADIATION_THERAPY', and 'GLEASON_SCORE'.
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1q gain cnv correlated to 'PATHOLOGY_T_STAGE', 'RADIATION_THERAPY', and 'GLEASON_SCORE'.
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2p gain cnv correlated to 'PSA_VALUE'.
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2q gain cnv correlated to 'PSA_VALUE'.
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3p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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3q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', 'GLEASON_SCORE', and 'PSA_VALUE'.
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5p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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5q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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6p gain cnv correlated to 'Time to Death', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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6q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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7p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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7q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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8p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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8q gain cnv correlated to 'PATHOLOGY_T_STAGE', 'RESIDUAL_TUMOR', 'GLEASON_SCORE', and 'PSA_VALUE'.
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9p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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9q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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10p gain cnv correlated to 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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10q gain cnv correlated to 'GLEASON_SCORE'.
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11p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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11q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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12p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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12q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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14q gain cnv correlated to 'YEARS_TO_BIRTH', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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16p gain cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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16q gain cnv correlated to 'YEARS_TO_BIRTH' and 'GLEASON_SCORE'.
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17p gain cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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17q gain cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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18p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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18q gain cnv correlated to 'YEARS_TO_BIRTH' and 'PATHOLOGY_T_STAGE'.
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19p gain cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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19q gain cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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20p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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20q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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21q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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22q gain cnv correlated to 'GLEASON_SCORE'.
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xp gain cnv correlated to 'PATHOLOGY_T_STAGE', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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xq gain cnv correlated to 'PATHOLOGY_T_STAGE', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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1p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'RADIATION_THERAPY', and 'GLEASON_SCORE'.
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1q loss cnv correlated to 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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2p loss cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', and 'GLEASON_SCORE'.
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2q loss cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', and 'GLEASON_SCORE'.
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3p loss cnv correlated to 'GLEASON_SCORE'.
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3q loss cnv correlated to 'GLEASON_SCORE'.
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4p loss cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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4q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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5p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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5q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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6p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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6q loss cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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8p loss cnv correlated to 'PATHOLOGY_T_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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8q loss cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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9p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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9q loss cnv correlated to 'GLEASON_SCORE'.
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10p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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10q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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11p loss cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', and 'GLEASON_SCORE'.
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11q loss cnv correlated to 'PATHOLOGY_T_STAGE' and 'GLEASON_SCORE'.
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12p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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12q loss cnv correlated to 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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13q loss cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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14q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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15q loss cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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16p loss cnv correlated to 'GLEASON_SCORE'.
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16q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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17p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', 'GLEASON_SCORE', and 'PSA_VALUE'.
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17q loss cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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18p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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18q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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19p loss cnv correlated to 'YEARS_TO_BIRTH' and 'GLEASON_SCORE'.
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19q loss cnv correlated to 'YEARS_TO_BIRTH' and 'GLEASON_SCORE'.
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20p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', and 'NUMBER_OF_LYMPH_NODES'.
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20q loss cnv correlated to 'PATHOLOGY_T_STAGE'.
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21q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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22q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', 'GLEASON_SCORE', and 'PSA_VALUE'.
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xp loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'NUMBER_OF_LYMPH_NODES', 'GLEASON_SCORE', and 'PSA_VALUE'.
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xq loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'NUMBER_OF_LYMPH_NODES', 'GLEASON_SCORE', and 'PSA_VALUE'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 80 arm-level events and 11 clinical features. Shown in the table are P values (Q values). Thresholded by Q value < 0.25, 316 significant findings detected.
Clinical Features |
Time to Death |
YEARS TO BIRTH |
PATHOLOGY T STAGE |
PATHOLOGY N STAGE |
RADIATION THERAPY |
HISTOLOGICAL TYPE |
RESIDUAL TUMOR |
NUMBER OF LYMPH NODES |
GLEASON SCORE |
PSA VALUE |
RACE | ||
nCNV (%) | nWild-Type | logrank test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | |
xp loss | 38 (8%) | 453 |
0.0575 (0.178) |
0.0733 (0.217) |
0.0112 (0.0528) |
0.023 (0.0868) |
0.033 (0.116) |
0.296 (0.555) |
0.572 (0.844) |
0.00782 (0.04) |
1.45e-06 (7.97e-05) |
0.0172 (0.0743) |
0.386 (0.658) |
xq loss | 38 (8%) | 453 |
0.0575 (0.178) |
0.0733 (0.217) |
0.0117 (0.0546) |
0.023 (0.0868) |
0.033 (0.116) |
0.296 (0.555) |
0.575 (0.846) |
0.00782 (0.04) |
1.45e-06 (7.97e-05) |
0.0172 (0.0743) |
0.386 (0.658) |
3q gain | 53 (11%) | 438 |
0.0937 (0.258) |
0.00513 (0.0307) |
5e-05 (0.00102) |
0.0351 (0.121) |
0.161 (0.381) |
0.184 (0.414) |
0.0273 (0.101) |
0.00901 (0.0448) |
1e-08 (2.95e-06) |
0.0287 (0.105) |
0.634 (0.895) |
5p gain | 23 (5%) | 468 |
0.397 (0.672) |
0.00181 (0.0151) |
0.00018 (0.00283) |
0.00247 (0.0191) |
0.0269 (0.1) |
0.494 (0.776) |
0.0183 (0.0759) |
5.17e-05 (0.00103) |
1.77e-06 (9.19e-05) |
0.351 (0.627) |
|
12p gain | 13 (3%) | 478 |
0.556 (0.826) |
0.0159 (0.07) |
0.00603 (0.0343) |
0.0218 (0.0837) |
0.0432 (0.143) |
1 (1.00) |
0.00286 (0.0211) |
0.0134 (0.061) |
2.03e-05 (0.000511) |
0.337 (0.61) |
|
12q gain | 16 (3%) | 475 |
0.553 (0.825) |
0.0855 (0.243) |
0.00663 (0.036) |
0.0185 (0.0761) |
0.00508 (0.0306) |
1 (1.00) |
6e-05 (0.00112) |
0.00786 (0.04) |
1.19e-05 (0.000362) |
0.675 (0.921) |
|
4p loss | 24 (5%) | 467 |
0.552 (0.825) |
0.0735 (0.217) |
0.0119 (0.0552) |
4.87e-05 (0.00102) |
0.0539 (0.171) |
0.509 (0.784) |
0.00919 (0.0454) |
2.28e-06 (0.000106) |
3.09e-07 (2.47e-05) |
0.902 (1.00) |
1 (1.00) |
22q loss | 47 (10%) | 444 |
0.218 (0.459) |
0.476 (0.757) |
3e-05 (0.000695) |
0.000733 (0.00785) |
0.011 (0.0525) |
0.634 (0.895) |
0.00893 (0.0446) |
0.000482 (0.00589) |
3.31e-08 (4.4e-06) |
0.0752 (0.219) |
0.493 (0.776) |
3p gain | 39 (8%) | 452 |
0.274 (0.535) |
0.00172 (0.0144) |
0.00223 (0.018) |
0.0449 (0.147) |
0.167 (0.386) |
0.0915 (0.253) |
0.061 (0.187) |
0.00694 (0.0366) |
5.1e-08 (5.01e-06) |
0.328 (0.603) |
0.529 (0.808) |
5q gain | 12 (2%) | 479 |
0.667 (0.913) |
0.000169 (0.00271) |
0.00878 (0.0442) |
0.00683 (0.0362) |
1 (1.00) |
1 (1.00) |
0.0226 (0.0861) |
0.00028 (0.00391) |
0.00191 (0.0157) |
0.179 (0.405) |
|
9p gain | 33 (7%) | 458 |
0.791 (1.00) |
0.00505 (0.0306) |
6e-05 (0.00112) |
0.000316 (0.00422) |
0.16 (0.381) |
0.241 (0.487) |
0.0204 (0.0796) |
0.000223 (0.00328) |
2.23e-06 (0.000106) |
0.581 (0.847) |
0.348 (0.623) |
9q gain | 49 (10%) | 442 |
0.967 (1.00) |
0.0181 (0.0757) |
2e-05 (0.000511) |
4.99e-06 (0.000176) |
0.161 (0.381) |
0.155 (0.371) |
0.0148 (0.0667) |
8.05e-07 (5.06e-05) |
1.83e-08 (3.23e-06) |
0.923 (1.00) |
0.46 (0.739) |
11p gain | 25 (5%) | 466 |
0.548 (0.821) |
0.0461 (0.149) |
0.00282 (0.021) |
0.00133 (0.0119) |
0.224 (0.467) |
1 (1.00) |
0.0239 (0.0898) |
0.00162 (0.0138) |
7.09e-05 (0.0013) |
0.207 (0.45) |
0.26 (0.514) |
11q gain | 28 (6%) | 463 |
0.508 (0.784) |
0.0516 (0.164) |
0.00437 (0.0284) |
0.0011 (0.0106) |
0.378 (0.654) |
1 (1.00) |
0.0367 (0.126) |
0.000937 (0.00959) |
1.09e-05 (0.000344) |
0.499 (0.781) |
0.264 (0.52) |
20q gain | 27 (5%) | 464 |
0.49 (0.773) |
0.00574 (0.0334) |
0.00146 (0.0128) |
0.0299 (0.108) |
0.0634 (0.193) |
1 (1.00) |
0.112 (0.293) |
0.0202 (0.0795) |
0.000339 (0.00445) |
0.284 (0.544) |
1 (1.00) |
4q loss | 16 (3%) | 475 |
0.635 (0.895) |
0.179 (0.405) |
0.018 (0.0757) |
0.00338 (0.0236) |
0.0109 (0.0523) |
0.375 (0.654) |
0.0347 (0.12) |
0.000502 (0.00605) |
2.9e-06 (0.000122) |
0.423 (0.706) |
1 (1.00) |
6q loss | 39 (8%) | 452 |
0.0514 (0.164) |
0.536 (0.814) |
0.00108 (0.0106) |
0.00314 (0.0228) |
0.0149 (0.0668) |
0.616 (0.874) |
0.2 (0.438) |
0.00129 (0.0117) |
7.94e-09 (2.95e-06) |
0.581 (0.847) |
0.125 (0.315) |
8q loss | 24 (5%) | 467 |
0.00438 (0.0284) |
0.783 (1.00) |
0.00074 (0.00785) |
0.0421 (0.14) |
0.0883 (0.249) |
1 (1.00) |
0.497 (0.779) |
0.0084 (0.0425) |
0.0853 (0.243) |
0.99 (1.00) |
1 (1.00) |
13q loss | 77 (16%) | 414 |
0.696 (0.935) |
0.082 (0.236) |
0.0008 (0.00838) |
0.0112 (0.0528) |
0.702 (0.938) |
0.707 (0.94) |
0.0361 (0.124) |
0.00318 (0.0228) |
3.23e-11 (2.84e-08) |
0.215 (0.459) |
0.438 (0.721) |
17p loss | 75 (15%) | 416 |
0.856 (1.00) |
0.372 (0.652) |
0.00106 (0.0106) |
0.0104 (0.0501) |
0.232 (0.478) |
0.706 (0.94) |
0.0567 (0.177) |
0.00152 (0.0133) |
4.98e-06 (0.000176) |
0.0413 (0.139) |
0.701 (0.938) |
18q loss | 100 (20%) | 391 |
0.667 (0.913) |
0.375 (0.654) |
0.00111 (0.0106) |
0.000371 (0.00479) |
0.0206 (0.0804) |
1 (1.00) |
5e-05 (0.00102) |
0.000116 (0.00196) |
1.74e-08 (3.23e-06) |
0.218 (0.459) |
0.755 (0.974) |
17p gain | 8 (2%) | 483 |
0.747 (0.969) |
0.361 (0.639) |
0.0183 (0.0759) |
0.00659 (0.036) |
0.0739 (0.218) |
1 (1.00) |
0.795 (1.00) |
0.00119 (0.0113) |
0.0544 (0.171) |
0.968 (1.00) |
|
20p gain | 25 (5%) | 466 |
0.271 (0.532) |
0.0545 (0.171) |
0.0109 (0.0523) |
0.0421 (0.14) |
0.102 (0.273) |
1 (1.00) |
0.396 (0.671) |
0.0278 (0.102) |
0.00105 (0.0106) |
0.172 (0.397) |
|
21q gain | 20 (4%) | 471 |
0.376 (0.654) |
0.00612 (0.0343) |
0.0156 (0.0689) |
0.0174 (0.0743) |
1 (1.00) |
0.446 (0.729) |
0.106 (0.282) |
0.0117 (0.0546) |
0.000128 (0.00213) |
0.764 (0.981) |
1 (1.00) |
5q loss | 22 (4%) | 469 |
0.582 (0.847) |
0.882 (1.00) |
3e-05 (0.000695) |
0.00158 (0.0137) |
0.00655 (0.036) |
1 (1.00) |
0.117 (0.301) |
0.00021 (0.00319) |
5.46e-07 (4e-05) |
0.653 (0.907) |
1 (1.00) |
10p loss | 41 (8%) | 450 |
0.769 (0.986) |
0.13 (0.325) |
2e-05 (0.000511) |
0.0003 (0.00413) |
0.222 (0.463) |
1 (1.00) |
0.0177 (0.0749) |
2.21e-05 (0.000541) |
2.68e-06 (0.000118) |
0.411 (0.691) |
1 (1.00) |
10q loss | 43 (9%) | 448 |
0.795 (1.00) |
0.273 (0.535) |
0.00019 (0.00293) |
0.000384 (0.00483) |
0.222 (0.463) |
1 (1.00) |
0.00611 (0.0343) |
3.91e-05 (0.000882) |
3.5e-08 (4.4e-06) |
0.578 (0.847) |
0.585 (0.849) |
14q loss | 25 (5%) | 466 |
0.38 (0.654) |
0.0999 (0.271) |
0.00054 (0.00625) |
0.0299 (0.108) |
1 (1.00) |
0.524 (0.802) |
0.0165 (0.0722) |
0.0312 (0.112) |
0.000376 (0.00479) |
0.136 (0.336) |
1 (1.00) |
15q loss | 36 (7%) | 455 |
0.843 (1.00) |
0.0192 (0.0782) |
1e-05 (0.000326) |
0.00352 (0.0239) |
0.175 (0.403) |
1 (1.00) |
0.185 (0.415) |
0.00132 (0.0118) |
1.4e-05 (0.000412) |
0.237 (0.484) |
1 (1.00) |
16q loss | 106 (22%) | 385 |
0.358 (0.635) |
0.273 (0.535) |
0.00246 (0.0191) |
0.071 (0.212) |
0.605 (0.867) |
1 (1.00) |
0.0177 (0.0749) |
0.0406 (0.137) |
4.42e-06 (0.000169) |
0.381 (0.654) |
1 (1.00) |
18p loss | 67 (14%) | 424 |
0.348 (0.623) |
0.296 (0.555) |
0.00622 (0.0346) |
0.111 (0.292) |
0.0887 (0.249) |
0.42 (0.703) |
0.00493 (0.0301) |
0.0857 (0.243) |
6.43e-07 (4.35e-05) |
0.6 (0.867) |
0.703 (0.938) |
6p gain | 10 (2%) | 481 |
0.046 (0.149) |
0.33 (0.604) |
0.182 (0.41) |
0.0218 (0.0837) |
0.101 (0.272) |
1 (1.00) |
0.218 (0.459) |
0.0152 (0.0676) |
0.0302 (0.109) |
0.329 (0.603) |
|
6q gain | 6 (1%) | 485 |
0.714 (0.944) |
0.0715 (0.213) |
0.48 (0.761) |
0.0785 (0.227) |
0.13 (0.325) |
1 (1.00) |
0.236 (0.483) |
0.0443 (0.146) |
0.0895 (0.249) |
0.762 (0.979) |
|
7p gain | 101 (21%) | 390 |
0.11 (0.291) |
0.0102 (0.0496) |
0.0325 (0.116) |
0.439 (0.721) |
0.38 (0.654) |
0.745 (0.969) |
0.00476 (0.0301) |
0.338 (0.61) |
8.43e-05 (0.00151) |
0.712 (0.944) |
1 (1.00) |
7q gain | 94 (19%) | 397 |
0.125 (0.315) |
0.0174 (0.0743) |
0.0874 (0.247) |
0.874 (1.00) |
0.467 (0.746) |
1 (1.00) |
0.00262 (0.02) |
0.812 (1.00) |
0.000253 (0.00359) |
0.857 (1.00) |
1 (1.00) |
8p gain | 71 (14%) | 420 |
0.696 (0.935) |
0.0099 (0.0484) |
0.00713 (0.0373) |
0.614 (0.874) |
0.322 (0.593) |
0.238 (0.484) |
0.00526 (0.0313) |
0.738 (0.962) |
3e-07 (2.47e-05) |
0.0912 (0.253) |
0.66 (0.912) |
8q gain | 123 (25%) | 368 |
0.709 (0.94) |
0.101 (0.272) |
0.00015 (0.00244) |
0.158 (0.378) |
0.249 (0.496) |
0.534 (0.812) |
0.00424 (0.0281) |
0.135 (0.336) |
5.12e-08 (5.01e-06) |
0.0378 (0.129) |
0.733 (0.957) |
14q gain | 10 (2%) | 481 |
0.402 (0.678) |
0.0293 (0.107) |
0.795 (1.00) |
0.218 (0.459) |
0.00272 (0.0205) |
0.253 (0.502) |
0.0452 (0.147) |
0.207 (0.45) |
0.00352 (0.0239) |
0.428 (0.712) |
|
16p gain | 31 (6%) | 460 |
0.246 (0.492) |
0.179 (0.405) |
0.00082 (0.00849) |
0.00163 (0.0138) |
0.378 (0.654) |
0.604 (0.867) |
0.28 (0.542) |
0.000714 (0.00776) |
6.44e-06 (0.000218) |
0.148 (0.357) |
1 (1.00) |
17q gain | 11 (2%) | 480 |
0.72 (0.948) |
0.221 (0.463) |
0.00461 (0.0296) |
0.00683 (0.0362) |
0.164 (0.385) |
1 (1.00) |
0.844 (1.00) |
0.00238 (0.0191) |
0.0691 (0.209) |
0.547 (0.821) |
|
18p gain | 18 (4%) | 473 |
0.578 (0.847) |
0.00428 (0.0281) |
0.00316 (0.0228) |
0.00338 (0.0236) |
1 (1.00) |
1 (1.00) |
0.82 (1.00) |
0.00264 (0.02) |
0.13 (0.325) |
0.722 (0.949) |
1 (1.00) |
19p gain | 11 (2%) | 480 |
0.638 (0.896) |
0.303 (0.567) |
0.00059 (0.00657) |
0.00683 (0.0362) |
0.644 (0.897) |
1 (1.00) |
0.141 (0.345) |
0.00345 (0.0237) |
0.000556 (0.00628) |
0.832 (1.00) |
|
19q gain | 11 (2%) | 480 |
0.616 (0.874) |
0.238 (0.484) |
0.00052 (0.0061) |
0.00683 (0.0362) |
1 (1.00) |
1 (1.00) |
0.14 (0.345) |
0.00345 (0.0237) |
0.000556 (0.00628) |
0.951 (1.00) |
1 (1.00) |
5p loss | 12 (2%) | 479 |
0.729 (0.955) |
0.836 (1.00) |
0.00046 (0.0057) |
0.124 (0.315) |
0.0049 (0.0301) |
1 (1.00) |
0.0626 (0.191) |
0.144 (0.351) |
5.31e-05 (0.00104) |
0.211 (0.455) |
1 (1.00) |
6p loss | 25 (5%) | 466 |
0.278 (0.538) |
0.947 (1.00) |
0.00067 (0.00737) |
0.00247 (0.0191) |
0.189 (0.421) |
1 (1.00) |
0.14 (0.345) |
0.00125 (0.0116) |
3.22e-06 (0.000129) |
0.197 (0.435) |
0.307 (0.569) |
9p loss | 21 (4%) | 470 |
0.405 (0.682) |
0.351 (0.627) |
0.0184 (0.0759) |
0.0701 (0.211) |
0.49 (0.773) |
1 (1.00) |
0.919 (1.00) |
0.0202 (0.0795) |
0.00571 (0.0334) |
0.543 (0.821) |
1 (1.00) |
12p loss | 48 (10%) | 443 |
0.355 (0.631) |
0.451 (0.73) |
0.0049 (0.0301) |
0.00109 (0.0106) |
0.636 (0.895) |
0.38 (0.654) |
0.291 (0.552) |
0.00051 (0.00606) |
0.000243 (0.00351) |
0.112 (0.293) |
1 (1.00) |
17q loss | 20 (4%) | 471 |
0.0683 (0.207) |
0.547 (0.821) |
0.0199 (0.0787) |
0.365 (0.643) |
1 (1.00) |
1 (1.00) |
0.0338 (0.118) |
0.327 (0.602) |
0.00318 (0.0228) |
0.572 (0.844) |
1 (1.00) |
20p loss | 19 (4%) | 472 |
0.197 (0.435) |
0.801 (1.00) |
0.0447 (0.147) |
0.022 (0.0843) |
0.0578 (0.178) |
1 (1.00) |
1 (1.00) |
0.00484 (0.0301) |
0.368 (0.649) |
0.887 (1.00) |
0.347 (0.623) |
21q loss | 24 (5%) | 467 |
0.582 (0.847) |
0.731 (0.956) |
0.00211 (0.0172) |
0.00371 (0.0249) |
0.524 (0.802) |
0.509 (0.784) |
0.307 (0.569) |
0.00124 (0.0116) |
0.000309 (0.00419) |
0.216 (0.459) |
1 (1.00) |
1p gain | 16 (3%) | 475 |
0.599 (0.867) |
0.146 (0.355) |
2e-05 (0.000511) |
0.166 (0.386) |
0.00761 (0.0396) |
1 (1.00) |
0.099 (0.27) |
0.165 (0.386) |
0.000101 (0.00174) |
0.288 (0.547) |
1 (1.00) |
1q gain | 26 (5%) | 465 |
0.5 (0.782) |
0.2 (0.438) |
5e-05 (0.00102) |
0.104 (0.279) |
0.0328 (0.116) |
0.538 (0.815) |
0.125 (0.315) |
0.0958 (0.263) |
9.19e-05 (0.00162) |
0.662 (0.913) |
1 (1.00) |
10p gain | 14 (3%) | 477 |
0.461 (0.74) |
0.196 (0.435) |
0.389 (0.662) |
0.0702 (0.211) |
1 (1.00) |
0.337 (0.61) |
0.171 (0.396) |
0.0758 (0.22) |
0.00576 (0.0334) |
0.442 (0.725) |
1 (1.00) |
xp gain | 7 (1%) | 484 |
0.758 (0.976) |
0.204 (0.444) |
0.0198 (0.0787) |
0.12 (0.306) |
0.572 (0.844) |
1 (1.00) |
0.00552 (0.0326) |
0.177 (0.403) |
0.00489 (0.0301) |
0.805 (1.00) |
|
xq gain | 7 (1%) | 484 |
0.758 (0.976) |
0.204 (0.444) |
0.0193 (0.0782) |
0.12 (0.306) |
0.572 (0.844) |
1 (1.00) |
0.00582 (0.0335) |
0.177 (0.403) |
0.00489 (0.0301) |
0.805 (1.00) |
|
1p loss | 22 (4%) | 469 |
0.523 (0.802) |
0.538 (0.815) |
0.0247 (0.0926) |
0.244 (0.492) |
0.0436 (0.144) |
1 (1.00) |
0.434 (0.717) |
0.166 (0.386) |
1.79e-05 (0.000509) |
0.294 (0.555) |
1 (1.00) |
1q loss | 6 (1%) | 485 |
0.746 (0.969) |
0.667 (0.913) |
0.195 (0.432) |
0.229 (0.476) |
0.506 (0.784) |
1 (1.00) |
0.0565 (0.177) |
0.0749 (0.219) |
0.0895 (0.249) |
0.371 (0.651) |
|
2p loss | 15 (3%) | 476 |
0.546 (0.821) |
0.00247 (0.0191) |
0.00983 (0.0483) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.0987 (0.27) |
0.684 (0.93) |
0.089 (0.249) |
0.414 (0.694) |
|
2q loss | 18 (4%) | 473 |
0.612 (0.874) |
0.0196 (0.0783) |
0.0194 (0.0783) |
0.749 (0.97) |
1 (1.00) |
1 (1.00) |
0.118 (0.303) |
0.53 (0.808) |
0.0195 (0.0783) |
0.688 (0.931) |
|
11p loss | 8 (2%) | 483 |
0.00635 (0.0352) |
0.307 (0.569) |
0.0753 (0.219) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.146 (0.355) |
0.714 (0.944) |
0.0191 (0.0782) |
0.999 (1.00) |
|
12q loss | 20 (4%) | 471 |
0.548 (0.821) |
0.94 (1.00) |
0.11 (0.291) |
0.0174 (0.0743) |
1 (1.00) |
1 (1.00) |
0.24 (0.487) |
0.0146 (0.066) |
0.00129 (0.0117) |
0.451 (0.73) |
1 (1.00) |
16q gain | 8 (2%) | 483 |
0.795 (1.00) |
0.00765 (0.0396) |
0.286 (0.546) |
1 (1.00) |
0.23 (0.476) |
1 (1.00) |
1 (1.00) |
0.81 (1.00) |
0.0826 (0.237) |
0.939 (1.00) |
1 (1.00) |
18q gain | 9 (2%) | 482 |
0.665 (0.913) |
0.0488 (0.157) |
0.0341 (0.118) |
0.218 (0.459) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.385 (0.658) |
0.43 (0.713) |
0.908 (1.00) |
|
8p loss | 167 (34%) | 324 |
0.38 (0.654) |
0.508 (0.784) |
0.00022 (0.00328) |
0.146 (0.355) |
0.881 (1.00) |
1 (1.00) |
0.427 (0.711) |
0.0819 (0.236) |
0.726 (0.954) |
0.286 (0.546) |
0.162 (0.381) |
11q loss | 5 (1%) | 486 |
0.896 (1.00) |
0.337 (0.61) |
0.0273 (0.101) |
0.334 (0.609) |
1 (1.00) |
1 (1.00) |
0.101 (0.272) |
0.0335 (0.118) |
0.696 (0.935) |
||
19p loss | 17 (3%) | 474 |
0.602 (0.867) |
0.0123 (0.0561) |
0.15 (0.36) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.449 (0.73) |
0.94 (1.00) |
0.0382 (0.129) |
0.464 (0.743) |
1 (1.00) |
19q loss | 17 (3%) | 474 |
0.602 (0.867) |
0.0123 (0.0561) |
0.15 (0.36) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.451 (0.73) |
0.94 (1.00) |
0.0382 (0.129) |
0.464 (0.743) |
1 (1.00) |
2p gain | 10 (2%) | 481 |
0.69 (0.933) |
0.706 (0.94) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.364 (0.643) |
0.992 (1.00) |
0.116 (0.3) |
0.0251 (0.0935) |
|
2q gain | 7 (1%) | 484 |
0.791 (1.00) |
0.413 (0.693) |
0.747 (0.969) |
1 (1.00) |
0.506 (0.784) |
1 (1.00) |
0.237 (0.484) |
0.819 (1.00) |
0.277 (0.538) |
0.00605 (0.0343) |
|
10q gain | 13 (3%) | 478 |
0.452 (0.73) |
0.814 (1.00) |
0.439 (0.721) |
0.246 (0.492) |
0.373 (0.652) |
0.317 (0.585) |
0.149 (0.358) |
0.165 (0.386) |
0.0516 (0.164) |
0.185 (0.415) |
1 (1.00) |
22q gain | 4 (1%) | 487 |
0.794 (1.00) |
0.434 (0.717) |
0.679 (0.925) |
0.558 (0.827) |
0.431 (0.714) |
1 (1.00) |
0.658 (0.911) |
0.609 (0.871) |
0.0217 (0.0837) |
0.242 (0.489) |
|
3p loss | 9 (2%) | 482 |
0.649 (0.904) |
0.772 (0.987) |
0.252 (0.502) |
0.167 (0.386) |
0.282 (0.544) |
1 (1.00) |
0.218 (0.459) |
0.138 (0.341) |
0.00333 (0.0236) |
0.126 (0.318) |
|
3q loss | 5 (1%) | 486 |
0.686 (0.93) |
0.292 (0.552) |
0.686 (0.93) |
0.59 (0.855) |
0.506 (0.784) |
1 (1.00) |
0.339 (0.611) |
0.277 (0.538) |
0.00384 (0.0256) |
0.212 (0.455) |
|
9q loss | 10 (2%) | 481 |
0.691 (0.933) |
0.656 (0.909) |
0.115 (0.299) |
0.218 (0.459) |
1 (1.00) |
1 (1.00) |
0.64 (0.897) |
0.192 (0.427) |
0.0151 (0.0676) |
0.256 (0.506) |
1 (1.00) |
16p loss | 32 (7%) | 459 |
0.451 (0.73) |
0.91 (1.00) |
0.519 (0.799) |
0.447 (0.729) |
0.554 (0.825) |
0.614 (0.874) |
0.306 (0.569) |
0.284 (0.544) |
0.0577 (0.178) |
0.898 (1.00) |
1 (1.00) |
20q loss | 9 (2%) | 482 |
0.728 (0.954) |
0.245 (0.492) |
0.048 (0.155) |
0.643 (0.897) |
0.282 (0.544) |
1 (1.00) |
0.815 (1.00) |
0.655 (0.909) |
0.114 (0.298) |
0.96 (1.00) |
1 (1.00) |
4p gain | 8 (2%) | 483 |
0.67 (0.915) |
0.122 (0.31) |
0.284 (0.544) |
0.643 (0.897) |
1 (1.00) |
1 (1.00) |
0.795 (1.00) |
0.789 (1.00) |
0.717 (0.947) |
0.476 (0.757) |
1 (1.00) |
4q gain | 10 (2%) | 481 |
0.663 (0.913) |
0.204 (0.444) |
0.179 (0.405) |
0.0915 (0.253) |
0.334 (0.609) |
0.253 (0.502) |
0.546 (0.821) |
0.116 (0.3) |
0.576 (0.846) |
0.23 (0.476) |
|
13q gain | 8 (2%) | 483 |
0.476 (0.757) |
0.456 (0.734) |
0.208 (0.45) |
0.617 (0.875) |
0.604 (0.867) |
0.208 (0.45) |
0.485 (0.767) |
0.639 (0.896) |
0.699 (0.938) |
0.231 (0.476) |
|
15q gain | 6 (1%) | 485 |
0.753 (0.973) |
0.923 (1.00) |
1 (1.00) |
0.305 (0.569) |
0.506 (0.784) |
1 (1.00) |
1 (1.00) |
0.394 (0.669) |
0.108 (0.288) |
0.353 (0.628) |
P value = 2e-05 (Fisher's exact test), Q value = 0.00051
Table S1. Gene #1: '1p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
1P GAIN MUTATED | 0 | 13 | 3 |
1P GAIN WILD-TYPE | 188 | 274 | 7 |
Figure S1. Get High-res Image Gene #1: '1p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D1V3.png)
P value = 0.00761 (Fisher's exact test), Q value = 0.04
Table S2. Gene #1: '1p gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
1P GAIN MUTATED | 9 | 6 |
1P GAIN WILD-TYPE | 369 | 51 |
Figure S2. Get High-res Image Gene #1: '1p gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D1V5.png)
P value = 0.000101 (Wilcoxon-test), Q value = 0.0017
Table S3. Gene #1: '1p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
1P GAIN MUTATED | 16 | 8.6 (0.9) |
1P GAIN WILD-TYPE | 475 | 7.6 (1.0) |
Figure S3. Get High-res Image Gene #1: '1p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D1V9.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.001
Table S4. Gene #2: '1q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
1Q GAIN MUTATED | 2 | 21 | 3 |
1Q GAIN WILD-TYPE | 186 | 266 | 7 |
Figure S4. Get High-res Image Gene #2: '1q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D2V3.png)
P value = 0.0328 (Fisher's exact test), Q value = 0.12
Table S5. Gene #2: '1q gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
1Q GAIN MUTATED | 18 | 7 |
1Q GAIN WILD-TYPE | 360 | 50 |
Figure S5. Get High-res Image Gene #2: '1q gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D2V5.png)
P value = 9.19e-05 (Wilcoxon-test), Q value = 0.0016
Table S6. Gene #2: '1q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
1Q GAIN MUTATED | 26 | 8.4 (0.9) |
1Q GAIN WILD-TYPE | 465 | 7.6 (1.0) |
Figure S6. Get High-res Image Gene #2: '1q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D2V9.png)
P value = 0.0251 (Wilcoxon-test), Q value = 0.094
Table S7. Gene #3: '2p gain' versus Clinical Feature #10: 'PSA_VALUE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 434 | 1.8 (16.0) |
2P GAIN MUTATED | 7 | 2.0 (2.7) |
2P GAIN WILD-TYPE | 427 | 1.8 (16.1) |
Figure S7. Get High-res Image Gene #3: '2p gain' versus Clinical Feature #10: 'PSA_VALUE'
![](D3V10.png)
P value = 0.00605 (Wilcoxon-test), Q value = 0.034
Table S8. Gene #4: '2q gain' versus Clinical Feature #10: 'PSA_VALUE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 434 | 1.8 (16.0) |
2Q GAIN MUTATED | 5 | 2.6 (3.0) |
2Q GAIN WILD-TYPE | 429 | 1.8 (16.1) |
Figure S8. Get High-res Image Gene #4: '2q gain' versus Clinical Feature #10: 'PSA_VALUE'
![](D4V10.png)
P value = 0.00172 (Wilcoxon-test), Q value = 0.014
Table S9. Gene #5: '3p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
3P GAIN MUTATED | 37 | 64.4 (5.6) |
3P GAIN WILD-TYPE | 443 | 60.7 (6.8) |
Figure S9. Get High-res Image Gene #5: '3p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D5V2.png)
P value = 0.00223 (Fisher's exact test), Q value = 0.018
Table S10. Gene #5: '3p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
3P GAIN MUTATED | 7 | 29 | 3 |
3P GAIN WILD-TYPE | 181 | 258 | 7 |
Figure S10. Get High-res Image Gene #5: '3p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D5V3.png)
P value = 0.0449 (Fisher's exact test), Q value = 0.15
Table S11. Gene #5: '3p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
3P GAIN MUTATED | 26 | 12 |
3P GAIN WILD-TYPE | 316 | 65 |
Figure S11. Get High-res Image Gene #5: '3p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D5V4.png)
P value = 0.061 (Fisher's exact test), Q value = 0.19
Table S12. Gene #5: '3p gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
3P GAIN MUTATED | 18 | 17 | 1 | 1 |
3P GAIN WILD-TYPE | 294 | 126 | 4 | 14 |
Figure S12. Get High-res Image Gene #5: '3p gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D5V7.png)
P value = 0.00694 (Wilcoxon-test), Q value = 0.037
Table S13. Gene #5: '3p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
3P GAIN MUTATED | 34 | 1.1 (2.0) |
3P GAIN WILD-TYPE | 367 | 0.4 (1.3) |
Figure S13. Get High-res Image Gene #5: '3p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D5V8.png)
P value = 5.1e-08 (Wilcoxon-test), Q value = 5e-06
Table S14. Gene #5: '3p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
3P GAIN MUTATED | 39 | 8.5 (0.9) |
3P GAIN WILD-TYPE | 452 | 7.5 (1.0) |
Figure S14. Get High-res Image Gene #5: '3p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D5V9.png)
P value = 0.00513 (Wilcoxon-test), Q value = 0.031
Table S15. Gene #6: '3q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
3Q GAIN MUTATED | 51 | 63.5 (6.0) |
3Q GAIN WILD-TYPE | 429 | 60.7 (6.8) |
Figure S15. Get High-res Image Gene #6: '3q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D6V2.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.001
Table S16. Gene #6: '3q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
3Q GAIN MUTATED | 8 | 41 | 4 |
3Q GAIN WILD-TYPE | 180 | 246 | 6 |
Figure S16. Get High-res Image Gene #6: '3q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D6V3.png)
P value = 0.0351 (Fisher's exact test), Q value = 0.12
Table S17. Gene #6: '3q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
3Q GAIN MUTATED | 36 | 15 |
3Q GAIN WILD-TYPE | 306 | 62 |
Figure S17. Get High-res Image Gene #6: '3q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D6V4.png)
P value = 0.0273 (Fisher's exact test), Q value = 0.1
Table S18. Gene #6: '3q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
3Q GAIN MUTATED | 25 | 24 | 1 | 1 |
3Q GAIN WILD-TYPE | 287 | 119 | 4 | 14 |
Figure S18. Get High-res Image Gene #6: '3q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D6V7.png)
P value = 0.00901 (Wilcoxon-test), Q value = 0.045
Table S19. Gene #6: '3q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
3Q GAIN MUTATED | 46 | 0.9 (1.9) |
3Q GAIN WILD-TYPE | 355 | 0.4 (1.3) |
Figure S19. Get High-res Image Gene #6: '3q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D6V8.png)
P value = 1e-08 (Wilcoxon-test), Q value = 2.9e-06
Table S20. Gene #6: '3q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
3Q GAIN MUTATED | 53 | 8.4 (0.9) |
3Q GAIN WILD-TYPE | 438 | 7.5 (1.0) |
Figure S20. Get High-res Image Gene #6: '3q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D6V9.png)
P value = 0.0287 (Wilcoxon-test), Q value = 0.1
Table S21. Gene #6: '3q gain' versus Clinical Feature #10: 'PSA_VALUE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 434 | 1.8 (16.0) |
3Q GAIN MUTATED | 44 | 2.3 (7.7) |
3Q GAIN WILD-TYPE | 390 | 1.7 (16.7) |
Figure S21. Get High-res Image Gene #6: '3q gain' versus Clinical Feature #10: 'PSA_VALUE'
![](D6V10.png)
P value = 0.00181 (Wilcoxon-test), Q value = 0.015
Table S22. Gene #9: '5p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
5P GAIN MUTATED | 23 | 65.3 (5.5) |
5P GAIN WILD-TYPE | 457 | 60.8 (6.8) |
Figure S22. Get High-res Image Gene #9: '5p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D9V2.png)
P value = 0.00018 (Fisher's exact test), Q value = 0.0028
Table S23. Gene #9: '5p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
5P GAIN MUTATED | 1 | 20 | 2 |
5P GAIN WILD-TYPE | 187 | 267 | 8 |
Figure S23. Get High-res Image Gene #9: '5p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D9V3.png)
P value = 0.00247 (Fisher's exact test), Q value = 0.019
Table S24. Gene #9: '5p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
5P GAIN MUTATED | 12 | 10 |
5P GAIN WILD-TYPE | 330 | 67 |
Figure S24. Get High-res Image Gene #9: '5p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D9V4.png)
P value = 0.0269 (Fisher's exact test), Q value = 0.1
Table S25. Gene #9: '5p gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
5P GAIN MUTATED | 13 | 6 |
5P GAIN WILD-TYPE | 365 | 51 |
Figure S25. Get High-res Image Gene #9: '5p gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D9V5.png)
P value = 0.0183 (Fisher's exact test), Q value = 0.076
Table S26. Gene #9: '5p gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
5P GAIN MUTATED | 9 | 12 | 1 | 1 |
5P GAIN WILD-TYPE | 303 | 131 | 4 | 14 |
Figure S26. Get High-res Image Gene #9: '5p gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D9V7.png)
P value = 5.17e-05 (Wilcoxon-test), Q value = 0.001
Table S27. Gene #9: '5p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
5P GAIN MUTATED | 19 | 1.7 (2.6) |
5P GAIN WILD-TYPE | 382 | 0.4 (1.2) |
Figure S27. Get High-res Image Gene #9: '5p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D9V8.png)
P value = 1.77e-06 (Wilcoxon-test), Q value = 9.2e-05
Table S28. Gene #9: '5p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
5P GAIN MUTATED | 23 | 8.6 (0.8) |
5P GAIN WILD-TYPE | 468 | 7.6 (1.0) |
Figure S28. Get High-res Image Gene #9: '5p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D9V9.png)
P value = 0.000169 (Wilcoxon-test), Q value = 0.0027
Table S29. Gene #10: '5q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
5Q GAIN MUTATED | 12 | 68.1 (3.8) |
5Q GAIN WILD-TYPE | 468 | 60.8 (6.8) |
Figure S29. Get High-res Image Gene #10: '5q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D10V2.png)
P value = 0.00878 (Fisher's exact test), Q value = 0.044
Table S30. Gene #10: '5q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
5Q GAIN MUTATED | 0 | 12 | 0 |
5Q GAIN WILD-TYPE | 188 | 275 | 10 |
Figure S30. Get High-res Image Gene #10: '5q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D10V3.png)
P value = 0.00683 (Fisher's exact test), Q value = 0.036
Table S31. Gene #10: '5q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
5Q GAIN MUTATED | 5 | 6 |
5Q GAIN WILD-TYPE | 337 | 71 |
Figure S31. Get High-res Image Gene #10: '5q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D10V4.png)
P value = 0.0226 (Fisher's exact test), Q value = 0.086
Table S32. Gene #10: '5q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
5Q GAIN MUTATED | 4 | 6 | 1 | 1 |
5Q GAIN WILD-TYPE | 308 | 137 | 4 | 14 |
Figure S32. Get High-res Image Gene #10: '5q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D10V7.png)
P value = 0.00028 (Wilcoxon-test), Q value = 0.0039
Table S33. Gene #10: '5q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
5Q GAIN MUTATED | 10 | 2.3 (3.0) |
5Q GAIN WILD-TYPE | 391 | 0.4 (1.3) |
Figure S33. Get High-res Image Gene #10: '5q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D10V8.png)
P value = 0.00191 (Wilcoxon-test), Q value = 0.016
Table S34. Gene #10: '5q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
5Q GAIN MUTATED | 12 | 8.5 (0.8) |
5Q GAIN WILD-TYPE | 479 | 7.6 (1.0) |
Figure S34. Get High-res Image Gene #10: '5q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D10V9.png)
P value = 0.046 (logrank test), Q value = 0.15
Table S35. Gene #11: '6p gain' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 489 | 9 | 0.7 - 165.2 (28.8) |
6P GAIN MUTATED | 10 | 1 | 4.3 - 109.2 (37.4) |
6P GAIN WILD-TYPE | 479 | 8 | 0.7 - 165.2 (28.8) |
Figure S35. Get High-res Image Gene #11: '6p gain' versus Clinical Feature #1: 'Time to Death'
![](D11V1.png)
P value = 0.0218 (Fisher's exact test), Q value = 0.084
Table S36. Gene #11: '6p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
6P GAIN MUTATED | 5 | 5 |
6P GAIN WILD-TYPE | 337 | 72 |
Figure S36. Get High-res Image Gene #11: '6p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D11V4.png)
P value = 0.0152 (Wilcoxon-test), Q value = 0.068
Table S37. Gene #11: '6p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
6P GAIN MUTATED | 10 | 0.8 (1.0) |
6P GAIN WILD-TYPE | 391 | 0.4 (1.4) |
Figure S37. Get High-res Image Gene #11: '6p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D11V8.png)
P value = 0.0302 (Wilcoxon-test), Q value = 0.11
Table S38. Gene #11: '6p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
6P GAIN MUTATED | 10 | 8.3 (0.9) |
6P GAIN WILD-TYPE | 481 | 7.6 (1.0) |
Figure S38. Get High-res Image Gene #11: '6p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D11V9.png)
P value = 0.0715 (Wilcoxon-test), Q value = 0.21
Table S39. Gene #12: '6q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
6Q GAIN MUTATED | 5 | 66.6 (5.0) |
6Q GAIN WILD-TYPE | 475 | 60.9 (6.8) |
Figure S39. Get High-res Image Gene #12: '6q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D12V2.png)
P value = 0.0785 (Fisher's exact test), Q value = 0.23
Table S40. Gene #12: '6q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
6Q GAIN MUTATED | 3 | 3 |
6Q GAIN WILD-TYPE | 339 | 74 |
Figure S40. Get High-res Image Gene #12: '6q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D12V4.png)
P value = 0.0443 (Wilcoxon-test), Q value = 0.15
Table S41. Gene #12: '6q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
6Q GAIN MUTATED | 6 | 1.0 (1.3) |
6Q GAIN WILD-TYPE | 395 | 0.4 (1.4) |
Figure S41. Get High-res Image Gene #12: '6q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D12V8.png)
P value = 0.0895 (Wilcoxon-test), Q value = 0.25
Table S42. Gene #12: '6q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
6Q GAIN MUTATED | 6 | 8.3 (1.0) |
6Q GAIN WILD-TYPE | 485 | 7.6 (1.0) |
Figure S42. Get High-res Image Gene #12: '6q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D12V9.png)
P value = 0.0102 (Wilcoxon-test), Q value = 0.05
Table S43. Gene #13: '7p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
7P GAIN MUTATED | 99 | 62.4 (6.6) |
7P GAIN WILD-TYPE | 381 | 60.6 (6.8) |
Figure S43. Get High-res Image Gene #13: '7p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D13V2.png)
P value = 0.0325 (Fisher's exact test), Q value = 0.12
Table S44. Gene #13: '7p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
7P GAIN MUTATED | 29 | 71 | 1 |
7P GAIN WILD-TYPE | 159 | 216 | 9 |
Figure S44. Get High-res Image Gene #13: '7p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D13V3.png)
P value = 0.00476 (Fisher's exact test), Q value = 0.03
Table S45. Gene #13: '7p gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
7P GAIN MUTATED | 50 | 43 | 1 | 4 |
7P GAIN WILD-TYPE | 262 | 100 | 4 | 11 |
Figure S45. Get High-res Image Gene #13: '7p gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D13V7.png)
P value = 8.43e-05 (Wilcoxon-test), Q value = 0.0015
Table S46. Gene #13: '7p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
7P GAIN MUTATED | 101 | 8.0 (1.1) |
7P GAIN WILD-TYPE | 390 | 7.5 (1.0) |
Figure S46. Get High-res Image Gene #13: '7p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D13V9.png)
P value = 0.0174 (Wilcoxon-test), Q value = 0.074
Table S47. Gene #14: '7q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
7Q GAIN MUTATED | 92 | 62.3 (6.8) |
7Q GAIN WILD-TYPE | 388 | 60.7 (6.8) |
Figure S47. Get High-res Image Gene #14: '7q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D14V2.png)
P value = 0.0874 (Fisher's exact test), Q value = 0.25
Table S48. Gene #14: '7q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
7Q GAIN MUTATED | 28 | 65 | 1 |
7Q GAIN WILD-TYPE | 160 | 222 | 9 |
Figure S48. Get High-res Image Gene #14: '7q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D14V3.png)
P value = 0.00262 (Fisher's exact test), Q value = 0.02
Table S49. Gene #14: '7q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
7Q GAIN MUTATED | 45 | 41 | 1 | 4 |
7Q GAIN WILD-TYPE | 267 | 102 | 4 | 11 |
Figure S49. Get High-res Image Gene #14: '7q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D14V7.png)
P value = 0.000253 (Wilcoxon-test), Q value = 0.0036
Table S50. Gene #14: '7q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
7Q GAIN MUTATED | 94 | 8.0 (1.1) |
7Q GAIN WILD-TYPE | 397 | 7.5 (1.0) |
Figure S50. Get High-res Image Gene #14: '7q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D14V9.png)
P value = 0.0099 (Wilcoxon-test), Q value = 0.048
Table S51. Gene #15: '8p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
8P GAIN MUTATED | 71 | 62.7 (6.5) |
8P GAIN WILD-TYPE | 409 | 60.7 (6.8) |
Figure S51. Get High-res Image Gene #15: '8p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D15V2.png)
P value = 0.00713 (Fisher's exact test), Q value = 0.037
Table S52. Gene #15: '8p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
8P GAIN MUTATED | 17 | 51 | 3 |
8P GAIN WILD-TYPE | 171 | 236 | 7 |
Figure S52. Get High-res Image Gene #15: '8p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D15V3.png)
P value = 0.00526 (Fisher's exact test), Q value = 0.031
Table S53. Gene #15: '8p gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
8P GAIN MUTATED | 34 | 33 | 1 | 1 |
8P GAIN WILD-TYPE | 278 | 110 | 4 | 14 |
Figure S53. Get High-res Image Gene #15: '8p gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D15V7.png)
P value = 3e-07 (Wilcoxon-test), Q value = 2.5e-05
Table S54. Gene #15: '8p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
8P GAIN MUTATED | 71 | 8.2 (1.0) |
8P GAIN WILD-TYPE | 420 | 7.5 (1.0) |
Figure S54. Get High-res Image Gene #15: '8p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D15V9.png)
P value = 0.00015 (Fisher's exact test), Q value = 0.0024
Table S55. Gene #16: '8q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
8Q GAIN MUTATED | 29 | 90 | 3 |
8Q GAIN WILD-TYPE | 159 | 197 | 7 |
Figure S55. Get High-res Image Gene #16: '8q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D16V3.png)
P value = 0.00424 (Fisher's exact test), Q value = 0.028
Table S56. Gene #16: '8q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
8Q GAIN MUTATED | 62 | 50 | 1 | 5 |
8Q GAIN WILD-TYPE | 250 | 93 | 4 | 10 |
Figure S56. Get High-res Image Gene #16: '8q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D16V7.png)
P value = 5.12e-08 (Wilcoxon-test), Q value = 5e-06
Table S57. Gene #16: '8q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
8Q GAIN MUTATED | 123 | 8.0 (1.0) |
8Q GAIN WILD-TYPE | 368 | 7.5 (1.0) |
Figure S57. Get High-res Image Gene #16: '8q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D16V9.png)
P value = 0.0378 (Wilcoxon-test), Q value = 0.13
Table S58. Gene #16: '8q gain' versus Clinical Feature #10: 'PSA_VALUE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 434 | 1.8 (16.0) |
8Q GAIN MUTATED | 104 | 4.4 (31.8) |
8Q GAIN WILD-TYPE | 330 | 1.0 (4.1) |
Figure S58. Get High-res Image Gene #16: '8q gain' versus Clinical Feature #10: 'PSA_VALUE'
![](D16V10.png)
P value = 0.00505 (Wilcoxon-test), Q value = 0.031
Table S59. Gene #17: '9p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
9P GAIN MUTATED | 33 | 64.3 (5.9) |
9P GAIN WILD-TYPE | 447 | 60.7 (6.8) |
Figure S59. Get High-res Image Gene #17: '9p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D17V2.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.0011
Table S60. Gene #17: '9p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
9P GAIN MUTATED | 2 | 29 | 1 |
9P GAIN WILD-TYPE | 186 | 258 | 9 |
Figure S60. Get High-res Image Gene #17: '9p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D17V3.png)
P value = 0.000316 (Fisher's exact test), Q value = 0.0042
Table S61. Gene #17: '9p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
9P GAIN MUTATED | 17 | 14 |
9P GAIN WILD-TYPE | 325 | 63 |
Figure S61. Get High-res Image Gene #17: '9p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D17V4.png)
P value = 0.0204 (Fisher's exact test), Q value = 0.08
Table S62. Gene #17: '9p gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
9P GAIN MUTATED | 14 | 16 | 1 | 0 |
9P GAIN WILD-TYPE | 298 | 127 | 4 | 15 |
Figure S62. Get High-res Image Gene #17: '9p gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D17V7.png)
P value = 0.000223 (Wilcoxon-test), Q value = 0.0033
Table S63. Gene #17: '9p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
9P GAIN MUTATED | 31 | 0.8 (1.4) |
9P GAIN WILD-TYPE | 370 | 0.4 (1.4) |
Figure S63. Get High-res Image Gene #17: '9p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D17V8.png)
P value = 2.23e-06 (Wilcoxon-test), Q value = 0.00011
Table S64. Gene #17: '9p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
9P GAIN MUTATED | 33 | 8.4 (0.9) |
9P GAIN WILD-TYPE | 458 | 7.5 (1.0) |
Figure S64. Get High-res Image Gene #17: '9p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D17V9.png)
P value = 0.0181 (Wilcoxon-test), Q value = 0.076
Table S65. Gene #18: '9q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
9Q GAIN MUTATED | 49 | 63.3 (5.9) |
9Q GAIN WILD-TYPE | 431 | 60.7 (6.9) |
Figure S65. Get High-res Image Gene #18: '9q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D18V2.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00051
Table S66. Gene #18: '9q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
9Q GAIN MUTATED | 4 | 42 | 2 |
9Q GAIN WILD-TYPE | 184 | 245 | 8 |
Figure S66. Get High-res Image Gene #18: '9q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D18V3.png)
P value = 4.99e-06 (Fisher's exact test), Q value = 0.00018
Table S67. Gene #18: '9q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
9Q GAIN MUTATED | 25 | 21 |
9Q GAIN WILD-TYPE | 317 | 56 |
Figure S67. Get High-res Image Gene #18: '9q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D18V4.png)
P value = 0.0148 (Fisher's exact test), Q value = 0.067
Table S68. Gene #18: '9q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
9Q GAIN MUTATED | 22 | 23 | 1 | 1 |
9Q GAIN WILD-TYPE | 290 | 120 | 4 | 14 |
Figure S68. Get High-res Image Gene #18: '9q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D18V7.png)
P value = 8.05e-07 (Wilcoxon-test), Q value = 5.1e-05
Table S69. Gene #18: '9q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
9Q GAIN MUTATED | 46 | 1.3 (2.6) |
9Q GAIN WILD-TYPE | 355 | 0.3 (1.1) |
Figure S69. Get High-res Image Gene #18: '9q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D18V8.png)
P value = 1.83e-08 (Wilcoxon-test), Q value = 3.2e-06
Table S70. Gene #18: '9q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
9Q GAIN MUTATED | 49 | 8.4 (0.9) |
9Q GAIN WILD-TYPE | 442 | 7.5 (1.0) |
Figure S70. Get High-res Image Gene #18: '9q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D18V9.png)
P value = 0.0702 (Fisher's exact test), Q value = 0.21
Table S71. Gene #19: '10p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
10P GAIN MUTATED | 8 | 5 |
10P GAIN WILD-TYPE | 334 | 72 |
Figure S71. Get High-res Image Gene #19: '10p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D19V4.png)
P value = 0.0758 (Wilcoxon-test), Q value = 0.22
Table S72. Gene #19: '10p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
10P GAIN MUTATED | 13 | 1.2 (3.0) |
10P GAIN WILD-TYPE | 388 | 0.4 (1.3) |
Figure S72. Get High-res Image Gene #19: '10p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D19V8.png)
P value = 0.00576 (Wilcoxon-test), Q value = 0.033
Table S73. Gene #19: '10p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
10P GAIN MUTATED | 14 | 8.4 (0.9) |
10P GAIN WILD-TYPE | 477 | 7.6 (1.0) |
Figure S73. Get High-res Image Gene #19: '10p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D19V9.png)
P value = 0.0516 (Wilcoxon-test), Q value = 0.16
Table S74. Gene #20: '10q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
10Q GAIN MUTATED | 13 | 8.2 (1.0) |
10Q GAIN WILD-TYPE | 478 | 7.6 (1.0) |
Figure S74. Get High-res Image Gene #20: '10q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D20V9.png)
P value = 0.0461 (Wilcoxon-test), Q value = 0.15
Table S75. Gene #21: '11p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
11P GAIN MUTATED | 25 | 63.3 (6.4) |
11P GAIN WILD-TYPE | 455 | 60.8 (6.8) |
Figure S75. Get High-res Image Gene #21: '11p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D21V2.png)
P value = 0.00282 (Fisher's exact test), Q value = 0.021
Table S76. Gene #21: '11p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
11P GAIN MUTATED | 3 | 20 | 2 |
11P GAIN WILD-TYPE | 185 | 267 | 8 |
Figure S76. Get High-res Image Gene #21: '11p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D21V3.png)
P value = 0.00133 (Fisher's exact test), Q value = 0.012
Table S77. Gene #21: '11p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
11P GAIN MUTATED | 13 | 11 |
11P GAIN WILD-TYPE | 329 | 66 |
Figure S77. Get High-res Image Gene #21: '11p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D21V4.png)
P value = 0.0239 (Fisher's exact test), Q value = 0.09
Table S78. Gene #21: '11p gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
11P GAIN MUTATED | 10 | 13 | 0 | 2 |
11P GAIN WILD-TYPE | 302 | 130 | 5 | 13 |
Figure S78. Get High-res Image Gene #21: '11p gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D21V7.png)
P value = 0.00162 (Wilcoxon-test), Q value = 0.014
Table S79. Gene #21: '11p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
11P GAIN MUTATED | 24 | 0.8 (1.5) |
11P GAIN WILD-TYPE | 377 | 0.4 (1.4) |
Figure S79. Get High-res Image Gene #21: '11p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D21V8.png)
P value = 7.09e-05 (Wilcoxon-test), Q value = 0.0013
Table S80. Gene #21: '11p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
11P GAIN MUTATED | 25 | 8.4 (1.0) |
11P GAIN WILD-TYPE | 466 | 7.6 (1.0) |
Figure S80. Get High-res Image Gene #21: '11p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D21V9.png)
P value = 0.0516 (Wilcoxon-test), Q value = 0.16
Table S81. Gene #22: '11q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
11Q GAIN MUTATED | 28 | 63.2 (6.4) |
11Q GAIN WILD-TYPE | 452 | 60.8 (6.8) |
Figure S81. Get High-res Image Gene #22: '11q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D22V2.png)
P value = 0.00437 (Fisher's exact test), Q value = 0.028
Table S82. Gene #22: '11q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
11Q GAIN MUTATED | 4 | 22 | 2 |
11Q GAIN WILD-TYPE | 184 | 265 | 8 |
Figure S82. Get High-res Image Gene #22: '11q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D22V3.png)
P value = 0.0011 (Fisher's exact test), Q value = 0.011
Table S83. Gene #22: '11q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
11Q GAIN MUTATED | 15 | 12 |
11Q GAIN WILD-TYPE | 327 | 65 |
Figure S83. Get High-res Image Gene #22: '11q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D22V4.png)
P value = 0.0367 (Fisher's exact test), Q value = 0.13
Table S84. Gene #22: '11q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
11Q GAIN MUTATED | 12 | 14 | 0 | 2 |
11Q GAIN WILD-TYPE | 300 | 129 | 5 | 13 |
Figure S84. Get High-res Image Gene #22: '11q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D22V7.png)
P value = 0.000937 (Wilcoxon-test), Q value = 0.0096
Table S85. Gene #22: '11q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
11Q GAIN MUTATED | 26 | 0.8 (1.5) |
11Q GAIN WILD-TYPE | 375 | 0.4 (1.4) |
Figure S85. Get High-res Image Gene #22: '11q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D22V8.png)
P value = 1.09e-05 (Wilcoxon-test), Q value = 0.00034
Table S86. Gene #22: '11q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
11Q GAIN MUTATED | 28 | 8.5 (1.0) |
11Q GAIN WILD-TYPE | 463 | 7.6 (1.0) |
Figure S86. Get High-res Image Gene #22: '11q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D22V9.png)
P value = 0.0159 (Wilcoxon-test), Q value = 0.07
Table S87. Gene #23: '12p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
12P GAIN MUTATED | 13 | 65.6 (5.8) |
12P GAIN WILD-TYPE | 467 | 60.8 (6.8) |
Figure S87. Get High-res Image Gene #23: '12p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D23V2.png)
P value = 0.00603 (Fisher's exact test), Q value = 0.034
Table S88. Gene #23: '12p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
12P GAIN MUTATED | 0 | 13 | 0 |
12P GAIN WILD-TYPE | 188 | 274 | 10 |
Figure S88. Get High-res Image Gene #23: '12p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D23V3.png)
P value = 0.0218 (Fisher's exact test), Q value = 0.084
Table S89. Gene #23: '12p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
12P GAIN MUTATED | 5 | 5 |
12P GAIN WILD-TYPE | 337 | 72 |
Figure S89. Get High-res Image Gene #23: '12p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D23V4.png)
P value = 0.0432 (Fisher's exact test), Q value = 0.14
Table S90. Gene #23: '12p gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
12P GAIN MUTATED | 7 | 4 |
12P GAIN WILD-TYPE | 371 | 53 |
Figure S90. Get High-res Image Gene #23: '12p gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D23V5.png)
P value = 0.00286 (Fisher's exact test), Q value = 0.021
Table S91. Gene #23: '12p gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
12P GAIN MUTATED | 3 | 9 | 1 | 0 |
12P GAIN WILD-TYPE | 309 | 134 | 4 | 15 |
Figure S91. Get High-res Image Gene #23: '12p gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D23V7.png)
P value = 0.0134 (Wilcoxon-test), Q value = 0.061
Table S92. Gene #23: '12p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
12P GAIN MUTATED | 10 | 1.2 (2.1) |
12P GAIN WILD-TYPE | 391 | 0.4 (1.3) |
Figure S92. Get High-res Image Gene #23: '12p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D23V8.png)
P value = 2.03e-05 (Wilcoxon-test), Q value = 0.00051
Table S93. Gene #23: '12p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
12P GAIN MUTATED | 13 | 8.8 (0.7) |
12P GAIN WILD-TYPE | 478 | 7.6 (1.0) |
Figure S93. Get High-res Image Gene #23: '12p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D23V9.png)
P value = 0.0855 (Wilcoxon-test), Q value = 0.24
Table S94. Gene #24: '12q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
12Q GAIN MUTATED | 16 | 64.1 (6.1) |
12Q GAIN WILD-TYPE | 464 | 60.9 (6.8) |
Figure S94. Get High-res Image Gene #24: '12q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D24V2.png)
P value = 0.00663 (Fisher's exact test), Q value = 0.036
Table S95. Gene #24: '12q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
12Q GAIN MUTATED | 1 | 14 | 1 |
12Q GAIN WILD-TYPE | 187 | 273 | 9 |
Figure S95. Get High-res Image Gene #24: '12q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D24V3.png)
P value = 0.0185 (Fisher's exact test), Q value = 0.076
Table S96. Gene #24: '12q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
12Q GAIN MUTATED | 7 | 6 |
12Q GAIN WILD-TYPE | 335 | 71 |
Figure S96. Get High-res Image Gene #24: '12q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D24V4.png)
P value = 0.00508 (Fisher's exact test), Q value = 0.031
Table S97. Gene #24: '12q gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
12Q GAIN MUTATED | 8 | 6 |
12Q GAIN WILD-TYPE | 370 | 51 |
Figure S97. Get High-res Image Gene #24: '12q gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D24V5.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.0011
Table S98. Gene #24: '12q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
12Q GAIN MUTATED | 2 | 13 | 1 | 0 |
12Q GAIN WILD-TYPE | 310 | 130 | 4 | 15 |
Figure S98. Get High-res Image Gene #24: '12q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D24V7.png)
P value = 0.00786 (Wilcoxon-test), Q value = 0.04
Table S99. Gene #24: '12q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
12Q GAIN MUTATED | 12 | 1.1 (2.0) |
12Q GAIN WILD-TYPE | 389 | 0.4 (1.3) |
Figure S99. Get High-res Image Gene #24: '12q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D24V8.png)
P value = 1.19e-05 (Wilcoxon-test), Q value = 0.00036
Table S100. Gene #24: '12q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
12Q GAIN MUTATED | 16 | 8.8 (0.8) |
12Q GAIN WILD-TYPE | 475 | 7.6 (1.0) |
Figure S100. Get High-res Image Gene #24: '12q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D24V9.png)
P value = 0.0293 (Wilcoxon-test), Q value = 0.11
Table S101. Gene #26: '14q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
14Q GAIN MUTATED | 10 | 65.2 (5.4) |
14Q GAIN WILD-TYPE | 470 | 60.9 (6.8) |
Figure S101. Get High-res Image Gene #26: '14q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D26V2.png)
P value = 0.00272 (Fisher's exact test), Q value = 0.02
Table S102. Gene #26: '14q gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
14Q GAIN MUTATED | 4 | 5 |
14Q GAIN WILD-TYPE | 374 | 52 |
Figure S102. Get High-res Image Gene #26: '14q gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D26V5.png)
P value = 0.0452 (Fisher's exact test), Q value = 0.15
Table S103. Gene #26: '14q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
14Q GAIN MUTATED | 3 | 6 | 0 | 1 |
14Q GAIN WILD-TYPE | 309 | 137 | 5 | 14 |
Figure S103. Get High-res Image Gene #26: '14q gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D26V7.png)
P value = 0.00352 (Wilcoxon-test), Q value = 0.024
Table S104. Gene #26: '14q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
14Q GAIN MUTATED | 10 | 8.5 (0.7) |
14Q GAIN WILD-TYPE | 481 | 7.6 (1.0) |
Figure S104. Get High-res Image Gene #26: '14q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D26V9.png)
P value = 0.00082 (Fisher's exact test), Q value = 0.0085
Table S105. Gene #28: '16p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
16P GAIN MUTATED | 3 | 27 | 1 |
16P GAIN WILD-TYPE | 185 | 260 | 9 |
Figure S105. Get High-res Image Gene #28: '16p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D28V3.png)
P value = 0.00163 (Fisher's exact test), Q value = 0.014
Table S106. Gene #28: '16p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
16P GAIN MUTATED | 16 | 12 |
16P GAIN WILD-TYPE | 326 | 65 |
Figure S106. Get High-res Image Gene #28: '16p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D28V4.png)
P value = 0.000714 (Wilcoxon-test), Q value = 0.0078
Table S107. Gene #28: '16p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
16P GAIN MUTATED | 26 | 0.8 (1.6) |
16P GAIN WILD-TYPE | 375 | 0.4 (1.3) |
Figure S107. Get High-res Image Gene #28: '16p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D28V8.png)
P value = 6.44e-06 (Wilcoxon-test), Q value = 0.00022
Table S108. Gene #28: '16p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
16P GAIN MUTATED | 31 | 8.5 (1.0) |
16P GAIN WILD-TYPE | 460 | 7.5 (1.0) |
Figure S108. Get High-res Image Gene #28: '16p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D28V9.png)
P value = 0.00765 (Wilcoxon-test), Q value = 0.04
Table S109. Gene #29: '16q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
16Q GAIN MUTATED | 8 | 66.9 (3.6) |
16Q GAIN WILD-TYPE | 472 | 60.9 (6.8) |
Figure S109. Get High-res Image Gene #29: '16q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D29V2.png)
P value = 0.0826 (Wilcoxon-test), Q value = 0.24
Table S110. Gene #29: '16q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
16Q GAIN MUTATED | 8 | 8.2 (1.0) |
16Q GAIN WILD-TYPE | 483 | 7.6 (1.0) |
Figure S110. Get High-res Image Gene #29: '16q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D29V9.png)
P value = 0.0183 (Fisher's exact test), Q value = 0.076
Table S111. Gene #30: '17p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
17P GAIN MUTATED | 0 | 7 | 1 |
17P GAIN WILD-TYPE | 188 | 280 | 9 |
Figure S111. Get High-res Image Gene #30: '17p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D30V3.png)
P value = 0.00659 (Fisher's exact test), Q value = 0.036
Table S112. Gene #30: '17p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
17P GAIN MUTATED | 3 | 5 |
17P GAIN WILD-TYPE | 339 | 72 |
Figure S112. Get High-res Image Gene #30: '17p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D30V4.png)
P value = 0.0739 (Fisher's exact test), Q value = 0.22
Table S113. Gene #30: '17p gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
17P GAIN MUTATED | 5 | 3 |
17P GAIN WILD-TYPE | 373 | 54 |
Figure S113. Get High-res Image Gene #30: '17p gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D30V5.png)
P value = 0.00119 (Wilcoxon-test), Q value = 0.011
Table S114. Gene #30: '17p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
17P GAIN MUTATED | 8 | 2.1 (3.7) |
17P GAIN WILD-TYPE | 393 | 0.4 (1.3) |
Figure S114. Get High-res Image Gene #30: '17p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D30V8.png)
P value = 0.0544 (Wilcoxon-test), Q value = 0.17
Table S115. Gene #30: '17p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
17P GAIN MUTATED | 8 | 8.4 (1.2) |
17P GAIN WILD-TYPE | 483 | 7.6 (1.0) |
Figure S115. Get High-res Image Gene #30: '17p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D30V9.png)
P value = 0.00461 (Fisher's exact test), Q value = 0.03
Table S116. Gene #31: '17q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
17Q GAIN MUTATED | 0 | 10 | 1 |
17Q GAIN WILD-TYPE | 188 | 277 | 9 |
Figure S116. Get High-res Image Gene #31: '17q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D31V3.png)
P value = 0.00683 (Fisher's exact test), Q value = 0.036
Table S117. Gene #31: '17q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
17Q GAIN MUTATED | 5 | 6 |
17Q GAIN WILD-TYPE | 337 | 71 |
Figure S117. Get High-res Image Gene #31: '17q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D31V4.png)
P value = 0.00238 (Wilcoxon-test), Q value = 0.019
Table S118. Gene #31: '17q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
17Q GAIN MUTATED | 11 | 1.6 (3.2) |
17Q GAIN WILD-TYPE | 390 | 0.4 (1.3) |
Figure S118. Get High-res Image Gene #31: '17q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D31V8.png)
P value = 0.0691 (Wilcoxon-test), Q value = 0.21
Table S119. Gene #31: '17q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
17Q GAIN MUTATED | 11 | 8.2 (1.1) |
17Q GAIN WILD-TYPE | 480 | 7.6 (1.0) |
Figure S119. Get High-res Image Gene #31: '17q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D31V9.png)
P value = 0.00428 (Wilcoxon-test), Q value = 0.028
Table S120. Gene #32: '18p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
18P GAIN MUTATED | 18 | 65.4 (6.0) |
18P GAIN WILD-TYPE | 462 | 60.8 (6.8) |
Figure S120. Get High-res Image Gene #32: '18p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D32V2.png)
P value = 0.00316 (Fisher's exact test), Q value = 0.023
Table S121. Gene #32: '18p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
18P GAIN MUTATED | 1 | 16 | 1 |
18P GAIN WILD-TYPE | 187 | 271 | 9 |
Figure S121. Get High-res Image Gene #32: '18p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D32V3.png)
P value = 0.00338 (Fisher's exact test), Q value = 0.024
Table S122. Gene #32: '18p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
18P GAIN MUTATED | 8 | 8 |
18P GAIN WILD-TYPE | 334 | 69 |
Figure S122. Get High-res Image Gene #32: '18p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D32V4.png)
P value = 0.00264 (Wilcoxon-test), Q value = 0.02
Table S123. Gene #32: '18p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
18P GAIN MUTATED | 16 | 1.2 (2.7) |
18P GAIN WILD-TYPE | 385 | 0.4 (1.3) |
Figure S123. Get High-res Image Gene #32: '18p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D32V8.png)
P value = 0.0488 (Wilcoxon-test), Q value = 0.16
Table S124. Gene #33: '18q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
18Q GAIN MUTATED | 9 | 64.9 (3.0) |
18Q GAIN WILD-TYPE | 471 | 60.9 (6.8) |
Figure S124. Get High-res Image Gene #33: '18q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D33V2.png)
P value = 0.0341 (Fisher's exact test), Q value = 0.12
Table S125. Gene #33: '18q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
18Q GAIN MUTATED | 0 | 9 | 0 |
18Q GAIN WILD-TYPE | 188 | 278 | 10 |
Figure S125. Get High-res Image Gene #33: '18q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D33V3.png)
P value = 0.00059 (Fisher's exact test), Q value = 0.0066
Table S126. Gene #34: '19p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
19P GAIN MUTATED | 0 | 9 | 2 |
19P GAIN WILD-TYPE | 188 | 278 | 8 |
Figure S126. Get High-res Image Gene #34: '19p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D34V3.png)
P value = 0.00683 (Fisher's exact test), Q value = 0.036
Table S127. Gene #34: '19p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
19P GAIN MUTATED | 5 | 6 |
19P GAIN WILD-TYPE | 337 | 71 |
Figure S127. Get High-res Image Gene #34: '19p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D34V4.png)
P value = 0.00345 (Wilcoxon-test), Q value = 0.024
Table S128. Gene #34: '19p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
19P GAIN MUTATED | 11 | 1.3 (2.3) |
19P GAIN WILD-TYPE | 390 | 0.4 (1.3) |
Figure S128. Get High-res Image Gene #34: '19p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D34V8.png)
P value = 0.000556 (Wilcoxon-test), Q value = 0.0063
Table S129. Gene #34: '19p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
19P GAIN MUTATED | 11 | 8.7 (0.9) |
19P GAIN WILD-TYPE | 480 | 7.6 (1.0) |
Figure S129. Get High-res Image Gene #34: '19p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D34V9.png)
P value = 0.00052 (Fisher's exact test), Q value = 0.0061
Table S130. Gene #35: '19q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
19Q GAIN MUTATED | 0 | 9 | 2 |
19Q GAIN WILD-TYPE | 188 | 278 | 8 |
Figure S130. Get High-res Image Gene #35: '19q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D35V3.png)
P value = 0.00683 (Fisher's exact test), Q value = 0.036
Table S131. Gene #35: '19q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
19Q GAIN MUTATED | 5 | 6 |
19Q GAIN WILD-TYPE | 337 | 71 |
Figure S131. Get High-res Image Gene #35: '19q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D35V4.png)
P value = 0.00345 (Wilcoxon-test), Q value = 0.024
Table S132. Gene #35: '19q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
19Q GAIN MUTATED | 11 | 1.3 (2.3) |
19Q GAIN WILD-TYPE | 390 | 0.4 (1.3) |
Figure S132. Get High-res Image Gene #35: '19q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D35V8.png)
P value = 0.000556 (Wilcoxon-test), Q value = 0.0063
Table S133. Gene #35: '19q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
19Q GAIN MUTATED | 11 | 8.7 (0.9) |
19Q GAIN WILD-TYPE | 480 | 7.6 (1.0) |
Figure S133. Get High-res Image Gene #35: '19q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D35V9.png)
P value = 0.0545 (Wilcoxon-test), Q value = 0.17
Table S134. Gene #36: '20p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
20P GAIN MUTATED | 24 | 63.4 (4.7) |
20P GAIN WILD-TYPE | 456 | 60.8 (6.9) |
Figure S134. Get High-res Image Gene #36: '20p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D36V2.png)
P value = 0.0109 (Fisher's exact test), Q value = 0.052
Table S135. Gene #36: '20p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
20P GAIN MUTATED | 3 | 20 | 1 |
20P GAIN WILD-TYPE | 185 | 267 | 9 |
Figure S135. Get High-res Image Gene #36: '20p gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D36V3.png)
P value = 0.0421 (Fisher's exact test), Q value = 0.14
Table S136. Gene #36: '20p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
20P GAIN MUTATED | 14 | 8 |
20P GAIN WILD-TYPE | 328 | 69 |
Figure S136. Get High-res Image Gene #36: '20p gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D36V4.png)
P value = 0.0278 (Wilcoxon-test), Q value = 0.1
Table S137. Gene #36: '20p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
20P GAIN MUTATED | 21 | 0.8 (1.4) |
20P GAIN WILD-TYPE | 380 | 0.4 (1.4) |
Figure S137. Get High-res Image Gene #36: '20p gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D36V8.png)
P value = 0.00105 (Wilcoxon-test), Q value = 0.011
Table S138. Gene #36: '20p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
20P GAIN MUTATED | 25 | 8.3 (1.2) |
20P GAIN WILD-TYPE | 466 | 7.6 (1.0) |
Figure S138. Get High-res Image Gene #36: '20p gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D36V9.png)
P value = 0.00574 (Wilcoxon-test), Q value = 0.033
Table S139. Gene #37: '20q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
20Q GAIN MUTATED | 26 | 64.3 (4.5) |
20Q GAIN WILD-TYPE | 454 | 60.8 (6.9) |
Figure S139. Get High-res Image Gene #37: '20q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D37V2.png)
P value = 0.00146 (Fisher's exact test), Q value = 0.013
Table S140. Gene #37: '20q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
20Q GAIN MUTATED | 3 | 22 | 2 |
20Q GAIN WILD-TYPE | 185 | 265 | 8 |
Figure S140. Get High-res Image Gene #37: '20q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D37V3.png)
P value = 0.0299 (Fisher's exact test), Q value = 0.11
Table S141. Gene #37: '20q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
20Q GAIN MUTATED | 16 | 9 |
20Q GAIN WILD-TYPE | 326 | 68 |
Figure S141. Get High-res Image Gene #37: '20q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D37V4.png)
P value = 0.0634 (Fisher's exact test), Q value = 0.19
Table S142. Gene #37: '20q gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
20Q GAIN MUTATED | 19 | 7 |
20Q GAIN WILD-TYPE | 359 | 50 |
Figure S142. Get High-res Image Gene #37: '20q gain' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D37V5.png)
P value = 0.0202 (Wilcoxon-test), Q value = 0.079
Table S143. Gene #37: '20q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
20Q GAIN MUTATED | 24 | 0.8 (1.4) |
20Q GAIN WILD-TYPE | 377 | 0.4 (1.4) |
Figure S143. Get High-res Image Gene #37: '20q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D37V8.png)
P value = 0.000339 (Wilcoxon-test), Q value = 0.0044
Table S144. Gene #37: '20q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
20Q GAIN MUTATED | 27 | 8.3 (1.1) |
20Q GAIN WILD-TYPE | 464 | 7.6 (1.0) |
Figure S144. Get High-res Image Gene #37: '20q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D37V9.png)
P value = 0.00612 (Wilcoxon-test), Q value = 0.034
Table S145. Gene #38: '21q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
21Q GAIN MUTATED | 20 | 65.0 (5.5) |
21Q GAIN WILD-TYPE | 460 | 60.8 (6.8) |
Figure S145. Get High-res Image Gene #38: '21q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D38V2.png)
P value = 0.0156 (Fisher's exact test), Q value = 0.069
Table S146. Gene #38: '21q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
21Q GAIN MUTATED | 2 | 18 | 0 |
21Q GAIN WILD-TYPE | 186 | 269 | 10 |
Figure S146. Get High-res Image Gene #38: '21q gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D38V3.png)
P value = 0.0174 (Fisher's exact test), Q value = 0.074
Table S147. Gene #38: '21q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
21Q GAIN MUTATED | 12 | 8 |
21Q GAIN WILD-TYPE | 330 | 69 |
Figure S147. Get High-res Image Gene #38: '21q gain' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D38V4.png)
P value = 0.0117 (Wilcoxon-test), Q value = 0.055
Table S148. Gene #38: '21q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
21Q GAIN MUTATED | 20 | 1.2 (2.3) |
21Q GAIN WILD-TYPE | 381 | 0.4 (1.3) |
Figure S148. Get High-res Image Gene #38: '21q gain' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D38V8.png)
P value = 0.000128 (Wilcoxon-test), Q value = 0.0021
Table S149. Gene #38: '21q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
21Q GAIN MUTATED | 20 | 8.5 (0.9) |
21Q GAIN WILD-TYPE | 471 | 7.6 (1.0) |
Figure S149. Get High-res Image Gene #38: '21q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D38V9.png)
P value = 0.0217 (Wilcoxon-test), Q value = 0.084
Table S150. Gene #39: '22q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
22Q GAIN MUTATED | 4 | 8.8 (0.5) |
22Q GAIN WILD-TYPE | 487 | 7.6 (1.0) |
Figure S150. Get High-res Image Gene #39: '22q gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D39V9.png)
P value = 0.0198 (Fisher's exact test), Q value = 0.079
Table S151. Gene #40: 'xp gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
XP GAIN MUTATED | 0 | 6 | 1 |
XP GAIN WILD-TYPE | 188 | 281 | 9 |
Figure S151. Get High-res Image Gene #40: 'xp gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D40V3.png)
P value = 0.00552 (Fisher's exact test), Q value = 0.033
Table S152. Gene #40: 'xp gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
XP GAIN MUTATED | 1 | 5 | 1 | 0 |
XP GAIN WILD-TYPE | 311 | 138 | 4 | 15 |
Figure S152. Get High-res Image Gene #40: 'xp gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D40V7.png)
P value = 0.00489 (Wilcoxon-test), Q value = 0.03
Table S153. Gene #40: 'xp gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
XP GAIN MUTATED | 7 | 8.7 (0.8) |
XP GAIN WILD-TYPE | 484 | 7.6 (1.0) |
Figure S153. Get High-res Image Gene #40: 'xp gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D40V9.png)
P value = 0.0193 (Fisher's exact test), Q value = 0.078
Table S154. Gene #41: 'xq gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
XQ GAIN MUTATED | 0 | 6 | 1 |
XQ GAIN WILD-TYPE | 188 | 281 | 9 |
Figure S154. Get High-res Image Gene #41: 'xq gain' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D41V3.png)
P value = 0.00582 (Fisher's exact test), Q value = 0.033
Table S155. Gene #41: 'xq gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
XQ GAIN MUTATED | 1 | 5 | 1 | 0 |
XQ GAIN WILD-TYPE | 311 | 138 | 4 | 15 |
Figure S155. Get High-res Image Gene #41: 'xq gain' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D41V7.png)
P value = 0.00489 (Wilcoxon-test), Q value = 0.03
Table S156. Gene #41: 'xq gain' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
XQ GAIN MUTATED | 7 | 8.7 (0.8) |
XQ GAIN WILD-TYPE | 484 | 7.6 (1.0) |
Figure S156. Get High-res Image Gene #41: 'xq gain' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D41V9.png)
P value = 0.0247 (Fisher's exact test), Q value = 0.093
Table S157. Gene #42: '1p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
1P LOSS MUTATED | 3 | 18 | 1 |
1P LOSS WILD-TYPE | 185 | 269 | 9 |
Figure S157. Get High-res Image Gene #42: '1p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D42V3.png)
P value = 0.0436 (Fisher's exact test), Q value = 0.14
Table S158. Gene #42: '1p loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
1P LOSS MUTATED | 15 | 6 |
1P LOSS WILD-TYPE | 363 | 51 |
Figure S158. Get High-res Image Gene #42: '1p loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D42V5.png)
P value = 1.79e-05 (Wilcoxon-test), Q value = 0.00051
Table S159. Gene #42: '1p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
1P LOSS MUTATED | 22 | 8.5 (0.9) |
1P LOSS WILD-TYPE | 469 | 7.6 (1.0) |
Figure S159. Get High-res Image Gene #42: '1p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D42V9.png)
P value = 0.0565 (Fisher's exact test), Q value = 0.18
Table S160. Gene #43: '1q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
1Q LOSS MUTATED | 1 | 5 | 0 | 0 |
1Q LOSS WILD-TYPE | 311 | 138 | 5 | 15 |
Figure S160. Get High-res Image Gene #43: '1q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D43V7.png)
P value = 0.0749 (Wilcoxon-test), Q value = 0.22
Table S161. Gene #43: '1q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
1Q LOSS MUTATED | 4 | 1.2 (1.5) |
1Q LOSS WILD-TYPE | 397 | 0.4 (1.4) |
Figure S161. Get High-res Image Gene #43: '1q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D43V8.png)
P value = 0.0895 (Wilcoxon-test), Q value = 0.25
Table S162. Gene #43: '1q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
1Q LOSS MUTATED | 6 | 8.3 (1.0) |
1Q LOSS WILD-TYPE | 485 | 7.6 (1.0) |
Figure S162. Get High-res Image Gene #43: '1q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D43V9.png)
P value = 0.00247 (Wilcoxon-test), Q value = 0.019
Table S163. Gene #44: '2p loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
2P LOSS MUTATED | 15 | 66.2 (6.0) |
2P LOSS WILD-TYPE | 465 | 60.8 (6.8) |
Figure S163. Get High-res Image Gene #44: '2p loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D44V2.png)
P value = 0.00983 (Fisher's exact test), Q value = 0.048
Table S164. Gene #44: '2p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
2P LOSS MUTATED | 1 | 13 | 1 |
2P LOSS WILD-TYPE | 187 | 274 | 9 |
Figure S164. Get High-res Image Gene #44: '2p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D44V3.png)
P value = 0.089 (Wilcoxon-test), Q value = 0.25
Table S165. Gene #44: '2p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
2P LOSS MUTATED | 15 | 8.1 (1.0) |
2P LOSS WILD-TYPE | 476 | 7.6 (1.0) |
Figure S165. Get High-res Image Gene #44: '2p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D44V9.png)
P value = 0.0196 (Wilcoxon-test), Q value = 0.078
Table S166. Gene #45: '2q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
2Q LOSS MUTATED | 18 | 64.8 (6.5) |
2Q LOSS WILD-TYPE | 462 | 60.8 (6.8) |
Figure S166. Get High-res Image Gene #45: '2q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D45V2.png)
P value = 0.0194 (Fisher's exact test), Q value = 0.078
Table S167. Gene #45: '2q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
2Q LOSS MUTATED | 2 | 15 | 1 |
2Q LOSS WILD-TYPE | 186 | 272 | 9 |
Figure S167. Get High-res Image Gene #45: '2q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D45V3.png)
P value = 0.0195 (Wilcoxon-test), Q value = 0.078
Table S168. Gene #45: '2q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
2Q LOSS MUTATED | 18 | 8.2 (1.0) |
2Q LOSS WILD-TYPE | 473 | 7.6 (1.0) |
Figure S168. Get High-res Image Gene #45: '2q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D45V9.png)
P value = 0.00333 (Wilcoxon-test), Q value = 0.024
Table S169. Gene #46: '3p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
3P LOSS MUTATED | 9 | 8.7 (1.1) |
3P LOSS WILD-TYPE | 482 | 7.6 (1.0) |
Figure S169. Get High-res Image Gene #46: '3p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D46V9.png)
P value = 0.00384 (Wilcoxon-test), Q value = 0.026
Table S170. Gene #47: '3q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
3Q LOSS MUTATED | 5 | 9.0 (0.7) |
3Q LOSS WILD-TYPE | 486 | 7.6 (1.0) |
Figure S170. Get High-res Image Gene #47: '3q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D47V9.png)
P value = 0.0735 (Wilcoxon-test), Q value = 0.22
Table S171. Gene #48: '4p loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
4P LOSS MUTATED | 24 | 63.3 (7.5) |
4P LOSS WILD-TYPE | 456 | 60.9 (6.8) |
Figure S171. Get High-res Image Gene #48: '4p loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D48V2.png)
P value = 0.0119 (Fisher's exact test), Q value = 0.055
Table S172. Gene #48: '4p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
4P LOSS MUTATED | 4 | 18 | 2 |
4P LOSS WILD-TYPE | 184 | 269 | 8 |
Figure S172. Get High-res Image Gene #48: '4p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D48V3.png)
P value = 4.87e-05 (Fisher's exact test), Q value = 0.001
Table S173. Gene #48: '4p loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
4P LOSS MUTATED | 11 | 13 |
4P LOSS WILD-TYPE | 331 | 64 |
Figure S173. Get High-res Image Gene #48: '4p loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D48V4.png)
P value = 0.0539 (Fisher's exact test), Q value = 0.17
Table S174. Gene #48: '4p loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
4P LOSS MUTATED | 16 | 6 |
4P LOSS WILD-TYPE | 362 | 51 |
Figure S174. Get High-res Image Gene #48: '4p loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D48V5.png)
P value = 0.00919 (Fisher's exact test), Q value = 0.045
Table S175. Gene #48: '4p loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
4P LOSS MUTATED | 8 | 14 | 0 | 1 |
4P LOSS WILD-TYPE | 304 | 129 | 5 | 14 |
Figure S175. Get High-res Image Gene #48: '4p loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D48V7.png)
P value = 2.28e-06 (Wilcoxon-test), Q value = 0.00011
Table S176. Gene #48: '4p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
4P LOSS MUTATED | 23 | 1.3 (1.7) |
4P LOSS WILD-TYPE | 378 | 0.4 (1.3) |
Figure S176. Get High-res Image Gene #48: '4p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D48V8.png)
P value = 3.09e-07 (Wilcoxon-test), Q value = 2.5e-05
Table S177. Gene #48: '4p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
4P LOSS MUTATED | 24 | 8.7 (0.8) |
4P LOSS WILD-TYPE | 467 | 7.6 (1.0) |
Figure S177. Get High-res Image Gene #48: '4p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D48V9.png)
P value = 0.018 (Fisher's exact test), Q value = 0.076
Table S178. Gene #49: '4q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
4Q LOSS MUTATED | 3 | 11 | 2 |
4Q LOSS WILD-TYPE | 185 | 276 | 8 |
Figure S178. Get High-res Image Gene #49: '4q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D49V3.png)
P value = 0.00338 (Fisher's exact test), Q value = 0.024
Table S179. Gene #49: '4q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
4Q LOSS MUTATED | 8 | 8 |
4Q LOSS WILD-TYPE | 334 | 69 |
Figure S179. Get High-res Image Gene #49: '4q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D49V4.png)
P value = 0.0109 (Fisher's exact test), Q value = 0.052
Table S180. Gene #49: '4q loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
4Q LOSS MUTATED | 10 | 6 |
4Q LOSS WILD-TYPE | 368 | 51 |
Figure S180. Get High-res Image Gene #49: '4q loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D49V5.png)
P value = 0.0347 (Fisher's exact test), Q value = 0.12
Table S181. Gene #49: '4q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
4Q LOSS MUTATED | 5 | 10 | 0 | 0 |
4Q LOSS WILD-TYPE | 307 | 133 | 5 | 15 |
Figure S181. Get High-res Image Gene #49: '4q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D49V7.png)
P value = 0.000502 (Wilcoxon-test), Q value = 0.006
Table S182. Gene #49: '4q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
4Q LOSS MUTATED | 15 | 1.2 (1.7) |
4Q LOSS WILD-TYPE | 386 | 0.4 (1.3) |
Figure S182. Get High-res Image Gene #49: '4q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D49V8.png)
P value = 2.9e-06 (Wilcoxon-test), Q value = 0.00012
Table S183. Gene #49: '4q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
4Q LOSS MUTATED | 16 | 8.8 (0.7) |
4Q LOSS WILD-TYPE | 475 | 7.6 (1.0) |
Figure S183. Get High-res Image Gene #49: '4q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D49V9.png)
P value = 0.00046 (Fisher's exact test), Q value = 0.0057
Table S184. Gene #50: '5p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
5P LOSS MUTATED | 0 | 10 | 2 |
5P LOSS WILD-TYPE | 188 | 277 | 8 |
Figure S184. Get High-res Image Gene #50: '5p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D50V3.png)
P value = 0.0049 (Fisher's exact test), Q value = 0.03
Table S185. Gene #50: '5p loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
5P LOSS MUTATED | 5 | 5 |
5P LOSS WILD-TYPE | 373 | 52 |
Figure S185. Get High-res Image Gene #50: '5p loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D50V5.png)
P value = 0.0626 (Fisher's exact test), Q value = 0.19
Table S186. Gene #50: '5p loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
5P LOSS MUTATED | 4 | 8 | 0 | 0 |
5P LOSS WILD-TYPE | 308 | 135 | 5 | 15 |
Figure S186. Get High-res Image Gene #50: '5p loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D50V7.png)
P value = 5.31e-05 (Wilcoxon-test), Q value = 0.001
Table S187. Gene #50: '5p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
5P LOSS MUTATED | 12 | 8.8 (0.7) |
5P LOSS WILD-TYPE | 479 | 7.6 (1.0) |
Figure S187. Get High-res Image Gene #50: '5p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D50V9.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00069
Table S188. Gene #51: '5q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
5Q LOSS MUTATED | 2 | 16 | 4 |
5Q LOSS WILD-TYPE | 186 | 271 | 6 |
Figure S188. Get High-res Image Gene #51: '5q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D51V3.png)
P value = 0.00158 (Fisher's exact test), Q value = 0.014
Table S189. Gene #51: '5q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
5Q LOSS MUTATED | 11 | 10 |
5Q LOSS WILD-TYPE | 331 | 67 |
Figure S189. Get High-res Image Gene #51: '5q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D51V4.png)
P value = 0.00655 (Fisher's exact test), Q value = 0.036
Table S190. Gene #51: '5q loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
5Q LOSS MUTATED | 12 | 7 |
5Q LOSS WILD-TYPE | 366 | 50 |
Figure S190. Get High-res Image Gene #51: '5q loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D51V5.png)
P value = 0.00021 (Wilcoxon-test), Q value = 0.0032
Table S191. Gene #51: '5q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
5Q LOSS MUTATED | 19 | 1.0 (1.5) |
5Q LOSS WILD-TYPE | 382 | 0.4 (1.4) |
Figure S191. Get High-res Image Gene #51: '5q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D51V8.png)
P value = 5.46e-07 (Wilcoxon-test), Q value = 4e-05
Table S192. Gene #51: '5q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
5Q LOSS MUTATED | 22 | 8.7 (0.7) |
5Q LOSS WILD-TYPE | 469 | 7.6 (1.0) |
Figure S192. Get High-res Image Gene #51: '5q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D51V9.png)
P value = 0.00067 (Fisher's exact test), Q value = 0.0074
Table S193. Gene #52: '6p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
6P LOSS MUTATED | 3 | 18 | 3 |
6P LOSS WILD-TYPE | 185 | 269 | 7 |
Figure S193. Get High-res Image Gene #52: '6p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D52V3.png)
P value = 0.00247 (Fisher's exact test), Q value = 0.019
Table S194. Gene #52: '6p loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
6P LOSS MUTATED | 12 | 10 |
6P LOSS WILD-TYPE | 330 | 67 |
Figure S194. Get High-res Image Gene #52: '6p loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D52V4.png)
P value = 0.00125 (Wilcoxon-test), Q value = 0.012
Table S195. Gene #52: '6p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
6P LOSS MUTATED | 21 | 0.7 (0.8) |
6P LOSS WILD-TYPE | 380 | 0.4 (1.4) |
Figure S195. Get High-res Image Gene #52: '6p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D52V8.png)
P value = 3.22e-06 (Wilcoxon-test), Q value = 0.00013
Table S196. Gene #52: '6p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
6P LOSS MUTATED | 25 | 8.6 (0.9) |
6P LOSS WILD-TYPE | 466 | 7.6 (1.0) |
Figure S196. Get High-res Image Gene #52: '6p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D52V9.png)
P value = 0.0514 (logrank test), Q value = 0.16
Table S197. Gene #53: '6q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 489 | 9 | 0.7 - 165.2 (28.8) |
6Q LOSS MUTATED | 39 | 2 | 1.0 - 75.8 (31.4) |
6Q LOSS WILD-TYPE | 450 | 7 | 0.7 - 165.2 (28.8) |
Figure S197. Get High-res Image Gene #53: '6q loss' versus Clinical Feature #1: 'Time to Death'
![](D53V1.png)
P value = 0.00108 (Fisher's exact test), Q value = 0.011
Table S198. Gene #53: '6q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
6Q LOSS MUTATED | 6 | 29 | 3 |
6Q LOSS WILD-TYPE | 182 | 258 | 7 |
Figure S198. Get High-res Image Gene #53: '6q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D53V3.png)
P value = 0.00314 (Fisher's exact test), Q value = 0.023
Table S199. Gene #53: '6q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
6Q LOSS MUTATED | 23 | 14 |
6Q LOSS WILD-TYPE | 319 | 63 |
Figure S199. Get High-res Image Gene #53: '6q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D53V4.png)
P value = 0.0149 (Fisher's exact test), Q value = 0.067
Table S200. Gene #53: '6q loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
6Q LOSS MUTATED | 25 | 10 |
6Q LOSS WILD-TYPE | 353 | 47 |
Figure S200. Get High-res Image Gene #53: '6q loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D53V5.png)
P value = 0.00129 (Wilcoxon-test), Q value = 0.012
Table S201. Gene #53: '6q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
6Q LOSS MUTATED | 36 | 0.8 (1.3) |
6Q LOSS WILD-TYPE | 365 | 0.4 (1.4) |
Figure S201. Get High-res Image Gene #53: '6q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D53V8.png)
P value = 7.94e-09 (Wilcoxon-test), Q value = 2.9e-06
Table S202. Gene #53: '6q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
6Q LOSS MUTATED | 39 | 8.5 (0.9) |
6Q LOSS WILD-TYPE | 452 | 7.5 (1.0) |
Figure S202. Get High-res Image Gene #53: '6q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D53V9.png)
P value = 0.00022 (Fisher's exact test), Q value = 0.0033
Table S203. Gene #54: '8p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
8P LOSS MUTATED | 44 | 118 | 3 |
8P LOSS WILD-TYPE | 144 | 169 | 7 |
Figure S203. Get High-res Image Gene #54: '8p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D54V3.png)
P value = 0.0819 (Wilcoxon-test), Q value = 0.24
Table S204. Gene #54: '8p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
8P LOSS MUTATED | 137 | 0.6 (1.8) |
8P LOSS WILD-TYPE | 264 | 0.3 (1.0) |
Figure S204. Get High-res Image Gene #54: '8p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D54V8.png)
P value = 0.00438 (logrank test), Q value = 0.028
Table S205. Gene #55: '8q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 489 | 9 | 0.7 - 165.2 (28.8) |
8Q LOSS MUTATED | 24 | 2 | 1.0 - 109.2 (29.6) |
8Q LOSS WILD-TYPE | 465 | 7 | 0.7 - 165.2 (28.8) |
Figure S205. Get High-res Image Gene #55: '8q loss' versus Clinical Feature #1: 'Time to Death'
![](D55V1.png)
P value = 0.00074 (Fisher's exact test), Q value = 0.0078
Table S206. Gene #55: '8q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
8Q LOSS MUTATED | 2 | 20 | 2 |
8Q LOSS WILD-TYPE | 186 | 267 | 8 |
Figure S206. Get High-res Image Gene #55: '8q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D55V3.png)
P value = 0.0421 (Fisher's exact test), Q value = 0.14
Table S207. Gene #55: '8q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
8Q LOSS MUTATED | 14 | 8 |
8Q LOSS WILD-TYPE | 328 | 69 |
Figure S207. Get High-res Image Gene #55: '8q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D55V4.png)
P value = 0.0883 (Fisher's exact test), Q value = 0.25
Table S208. Gene #55: '8q loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
8Q LOSS MUTATED | 14 | 5 |
8Q LOSS WILD-TYPE | 364 | 52 |
Figure S208. Get High-res Image Gene #55: '8q loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D55V5.png)
P value = 0.0084 (Wilcoxon-test), Q value = 0.042
Table S209. Gene #55: '8q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
8Q LOSS MUTATED | 20 | 0.9 (1.4) |
8Q LOSS WILD-TYPE | 381 | 0.4 (1.4) |
Figure S209. Get High-res Image Gene #55: '8q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D55V8.png)
P value = 0.0853 (Wilcoxon-test), Q value = 0.24
Table S210. Gene #55: '8q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
8Q LOSS MUTATED | 24 | 8.0 (1.1) |
8Q LOSS WILD-TYPE | 467 | 7.6 (1.0) |
Figure S210. Get High-res Image Gene #55: '8q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D55V9.png)
P value = 0.0184 (Fisher's exact test), Q value = 0.076
Table S211. Gene #56: '9p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
9P LOSS MUTATED | 4 | 15 | 2 |
9P LOSS WILD-TYPE | 184 | 272 | 8 |
Figure S211. Get High-res Image Gene #56: '9p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D56V3.png)
P value = 0.0701 (Fisher's exact test), Q value = 0.21
Table S212. Gene #56: '9p loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
9P LOSS MUTATED | 13 | 7 |
9P LOSS WILD-TYPE | 329 | 70 |
Figure S212. Get High-res Image Gene #56: '9p loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D56V4.png)
P value = 0.0202 (Wilcoxon-test), Q value = 0.079
Table S213. Gene #56: '9p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
9P LOSS MUTATED | 18 | 1.4 (2.9) |
9P LOSS WILD-TYPE | 383 | 0.4 (1.2) |
Figure S213. Get High-res Image Gene #56: '9p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D56V8.png)
P value = 0.00571 (Wilcoxon-test), Q value = 0.033
Table S214. Gene #56: '9p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
9P LOSS MUTATED | 21 | 8.2 (1.1) |
9P LOSS WILD-TYPE | 470 | 7.6 (1.0) |
Figure S214. Get High-res Image Gene #56: '9p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D56V9.png)
P value = 0.0151 (Wilcoxon-test), Q value = 0.068
Table S215. Gene #57: '9q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
9Q LOSS MUTATED | 10 | 8.4 (1.1) |
9Q LOSS WILD-TYPE | 481 | 7.6 (1.0) |
Figure S215. Get High-res Image Gene #57: '9q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D57V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00051
Table S216. Gene #58: '10p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
10P LOSS MUTATED | 7 | 28 | 6 |
10P LOSS WILD-TYPE | 181 | 259 | 4 |
Figure S216. Get High-res Image Gene #58: '10p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D58V3.png)
P value = 3e-04 (Fisher's exact test), Q value = 0.0041
Table S217. Gene #58: '10p loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
10P LOSS MUTATED | 22 | 16 |
10P LOSS WILD-TYPE | 320 | 61 |
Figure S217. Get High-res Image Gene #58: '10p loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D58V4.png)
P value = 0.0177 (Fisher's exact test), Q value = 0.075
Table S218. Gene #58: '10p loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
10P LOSS MUTATED | 19 | 20 | 1 | 0 |
10P LOSS WILD-TYPE | 293 | 123 | 4 | 15 |
Figure S218. Get High-res Image Gene #58: '10p loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D58V7.png)
P value = 2.21e-05 (Wilcoxon-test), Q value = 0.00054
Table S219. Gene #58: '10p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
10P LOSS MUTATED | 37 | 1.3 (2.2) |
10P LOSS WILD-TYPE | 364 | 0.3 (1.2) |
Figure S219. Get High-res Image Gene #58: '10p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D58V8.png)
P value = 2.68e-06 (Wilcoxon-test), Q value = 0.00012
Table S220. Gene #58: '10p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
10P LOSS MUTATED | 41 | 8.3 (1.0) |
10P LOSS WILD-TYPE | 450 | 7.5 (1.0) |
Figure S220. Get High-res Image Gene #58: '10p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D58V9.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.0029
Table S221. Gene #59: '10q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
10Q LOSS MUTATED | 9 | 29 | 5 |
10Q LOSS WILD-TYPE | 179 | 258 | 5 |
Figure S221. Get High-res Image Gene #59: '10q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D59V3.png)
P value = 0.000384 (Fisher's exact test), Q value = 0.0048
Table S222. Gene #59: '10q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
10Q LOSS MUTATED | 24 | 17 |
10Q LOSS WILD-TYPE | 318 | 60 |
Figure S222. Get High-res Image Gene #59: '10q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D59V4.png)
P value = 0.00611 (Fisher's exact test), Q value = 0.034
Table S223. Gene #59: '10q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
10Q LOSS MUTATED | 19 | 23 | 0 | 0 |
10Q LOSS WILD-TYPE | 293 | 120 | 5 | 15 |
Figure S223. Get High-res Image Gene #59: '10q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D59V7.png)
P value = 3.91e-05 (Wilcoxon-test), Q value = 0.00088
Table S224. Gene #59: '10q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
10Q LOSS MUTATED | 40 | 1.1 (1.9) |
10Q LOSS WILD-TYPE | 361 | 0.4 (1.3) |
Figure S224. Get High-res Image Gene #59: '10q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D59V8.png)
P value = 3.5e-08 (Wilcoxon-test), Q value = 4.4e-06
Table S225. Gene #59: '10q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
10Q LOSS MUTATED | 43 | 8.4 (0.9) |
10Q LOSS WILD-TYPE | 448 | 7.5 (1.0) |
Figure S225. Get High-res Image Gene #59: '10q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D59V9.png)
P value = 0.00635 (logrank test), Q value = 0.035
Table S226. Gene #60: '11p loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 489 | 9 | 0.7 - 165.2 (28.8) |
11P LOSS MUTATED | 8 | 1 | 4.3 - 67.5 (26.5) |
11P LOSS WILD-TYPE | 481 | 8 | 0.7 - 165.2 (29.0) |
Figure S226. Get High-res Image Gene #60: '11p loss' versus Clinical Feature #1: 'Time to Death'
![](D60V1.png)
P value = 0.0753 (Fisher's exact test), Q value = 0.22
Table S227. Gene #60: '11p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
11P LOSS MUTATED | 1 | 5 | 1 |
11P LOSS WILD-TYPE | 187 | 282 | 9 |
Figure S227. Get High-res Image Gene #60: '11p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D60V3.png)
P value = 0.0191 (Wilcoxon-test), Q value = 0.078
Table S228. Gene #60: '11p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
11P LOSS MUTATED | 8 | 8.5 (1.1) |
11P LOSS WILD-TYPE | 483 | 7.6 (1.0) |
Figure S228. Get High-res Image Gene #60: '11p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D60V9.png)
P value = 0.0273 (Fisher's exact test), Q value = 0.1
Table S229. Gene #61: '11q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
11Q LOSS MUTATED | 0 | 4 | 1 |
11Q LOSS WILD-TYPE | 188 | 283 | 9 |
Figure S229. Get High-res Image Gene #61: '11q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D61V3.png)
P value = 0.0335 (Wilcoxon-test), Q value = 0.12
Table S230. Gene #61: '11q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
11Q LOSS MUTATED | 5 | 8.6 (0.9) |
11Q LOSS WILD-TYPE | 486 | 7.6 (1.0) |
Figure S230. Get High-res Image Gene #61: '11q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D61V9.png)
P value = 0.0049 (Fisher's exact test), Q value = 0.03
Table S231. Gene #62: '12p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
12P LOSS MUTATED | 10 | 35 | 3 |
12P LOSS WILD-TYPE | 178 | 252 | 7 |
Figure S231. Get High-res Image Gene #62: '12p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D62V3.png)
P value = 0.00109 (Fisher's exact test), Q value = 0.011
Table S232. Gene #62: '12p loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
12P LOSS MUTATED | 30 | 18 |
12P LOSS WILD-TYPE | 312 | 59 |
Figure S232. Get High-res Image Gene #62: '12p loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D62V4.png)
P value = 0.00051 (Wilcoxon-test), Q value = 0.0061
Table S233. Gene #62: '12p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
12P LOSS MUTATED | 46 | 0.7 (1.1) |
12P LOSS WILD-TYPE | 355 | 0.4 (1.4) |
Figure S233. Get High-res Image Gene #62: '12p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D62V8.png)
P value = 0.000243 (Wilcoxon-test), Q value = 0.0035
Table S234. Gene #62: '12p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
12P LOSS MUTATED | 48 | 8.1 (1.0) |
12P LOSS WILD-TYPE | 443 | 7.6 (1.0) |
Figure S234. Get High-res Image Gene #62: '12p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D62V9.png)
P value = 0.0174 (Fisher's exact test), Q value = 0.074
Table S235. Gene #63: '12q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
12Q LOSS MUTATED | 12 | 8 |
12Q LOSS WILD-TYPE | 330 | 69 |
Figure S235. Get High-res Image Gene #63: '12q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D63V4.png)
P value = 0.0146 (Wilcoxon-test), Q value = 0.066
Table S236. Gene #63: '12q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
12Q LOSS MUTATED | 19 | 0.7 (1.3) |
12Q LOSS WILD-TYPE | 382 | 0.4 (1.4) |
Figure S236. Get High-res Image Gene #63: '12q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D63V8.png)
P value = 0.00129 (Wilcoxon-test), Q value = 0.012
Table S237. Gene #63: '12q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
12Q LOSS MUTATED | 20 | 8.3 (1.0) |
12Q LOSS WILD-TYPE | 471 | 7.6 (1.0) |
Figure S237. Get High-res Image Gene #63: '12q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D63V9.png)
P value = 0.082 (Wilcoxon-test), Q value = 0.24
Table S238. Gene #64: '13q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
13Q LOSS MUTATED | 75 | 62.2 (6.8) |
13Q LOSS WILD-TYPE | 405 | 60.8 (6.8) |
Figure S238. Get High-res Image Gene #64: '13q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D64V2.png)
P value = 8e-04 (Fisher's exact test), Q value = 0.0084
Table S239. Gene #64: '13q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
13Q LOSS MUTATED | 16 | 57 | 3 |
13Q LOSS WILD-TYPE | 172 | 230 | 7 |
Figure S239. Get High-res Image Gene #64: '13q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D64V3.png)
P value = 0.0112 (Fisher's exact test), Q value = 0.053
Table S240. Gene #64: '13q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
13Q LOSS MUTATED | 50 | 21 |
13Q LOSS WILD-TYPE | 292 | 56 |
Figure S240. Get High-res Image Gene #64: '13q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D64V4.png)
P value = 0.0361 (Fisher's exact test), Q value = 0.12
Table S241. Gene #64: '13q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
13Q LOSS MUTATED | 39 | 32 | 0 | 3 |
13Q LOSS WILD-TYPE | 273 | 111 | 5 | 12 |
Figure S241. Get High-res Image Gene #64: '13q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D64V7.png)
P value = 0.00318 (Wilcoxon-test), Q value = 0.023
Table S242. Gene #64: '13q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
13Q LOSS MUTATED | 68 | 0.8 (1.7) |
13Q LOSS WILD-TYPE | 333 | 0.3 (1.3) |
Figure S242. Get High-res Image Gene #64: '13q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D64V8.png)
P value = 3.23e-11 (Wilcoxon-test), Q value = 2.8e-08
Table S243. Gene #64: '13q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
13Q LOSS MUTATED | 77 | 8.3 (0.9) |
13Q LOSS WILD-TYPE | 414 | 7.5 (1.0) |
Figure S243. Get High-res Image Gene #64: '13q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D64V9.png)
P value = 0.00054 (Fisher's exact test), Q value = 0.0063
Table S244. Gene #65: '14q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
14Q LOSS MUTATED | 2 | 21 | 2 |
14Q LOSS WILD-TYPE | 186 | 266 | 8 |
Figure S244. Get High-res Image Gene #65: '14q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D65V3.png)
P value = 0.0299 (Fisher's exact test), Q value = 0.11
Table S245. Gene #65: '14q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
14Q LOSS MUTATED | 16 | 9 |
14Q LOSS WILD-TYPE | 326 | 68 |
Figure S245. Get High-res Image Gene #65: '14q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D65V4.png)
P value = 0.0165 (Fisher's exact test), Q value = 0.072
Table S246. Gene #65: '14q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
14Q LOSS MUTATED | 9 | 14 | 0 | 1 |
14Q LOSS WILD-TYPE | 303 | 129 | 5 | 14 |
Figure S246. Get High-res Image Gene #65: '14q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D65V7.png)
P value = 0.0312 (Wilcoxon-test), Q value = 0.11
Table S247. Gene #65: '14q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
14Q LOSS MUTATED | 25 | 0.6 (1.0) |
14Q LOSS WILD-TYPE | 376 | 0.4 (1.4) |
Figure S247. Get High-res Image Gene #65: '14q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D65V8.png)
P value = 0.000376 (Wilcoxon-test), Q value = 0.0048
Table S248. Gene #65: '14q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
14Q LOSS MUTATED | 25 | 8.3 (0.9) |
14Q LOSS WILD-TYPE | 466 | 7.6 (1.0) |
Figure S248. Get High-res Image Gene #65: '14q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D65V9.png)
P value = 0.0192 (Wilcoxon-test), Q value = 0.078
Table S249. Gene #66: '15q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
15Q LOSS MUTATED | 36 | 63.7 (6.3) |
15Q LOSS WILD-TYPE | 444 | 60.8 (6.8) |
Figure S249. Get High-res Image Gene #66: '15q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D66V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00033
Table S250. Gene #66: '15q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
15Q LOSS MUTATED | 2 | 31 | 3 |
15Q LOSS WILD-TYPE | 186 | 256 | 7 |
Figure S250. Get High-res Image Gene #66: '15q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D66V3.png)
P value = 0.00352 (Fisher's exact test), Q value = 0.024
Table S251. Gene #66: '15q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
15Q LOSS MUTATED | 20 | 13 |
15Q LOSS WILD-TYPE | 322 | 64 |
Figure S251. Get High-res Image Gene #66: '15q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D66V4.png)
P value = 0.00132 (Wilcoxon-test), Q value = 0.012
Table S252. Gene #66: '15q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
15Q LOSS MUTATED | 33 | 0.9 (1.5) |
15Q LOSS WILD-TYPE | 368 | 0.4 (1.3) |
Figure S252. Get High-res Image Gene #66: '15q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D66V8.png)
P value = 1.4e-05 (Wilcoxon-test), Q value = 0.00041
Table S253. Gene #66: '15q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
15Q LOSS MUTATED | 36 | 8.3 (1.0) |
15Q LOSS WILD-TYPE | 455 | 7.5 (1.0) |
Figure S253. Get High-res Image Gene #66: '15q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D66V9.png)
P value = 0.0577 (Wilcoxon-test), Q value = 0.18
Table S254. Gene #67: '16p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
16P LOSS MUTATED | 32 | 8.0 (1.1) |
16P LOSS WILD-TYPE | 459 | 7.6 (1.0) |
Figure S254. Get High-res Image Gene #67: '16p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D67V9.png)
P value = 0.00246 (Fisher's exact test), Q value = 0.019
Table S255. Gene #68: '16q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
16Q LOSS MUTATED | 26 | 76 | 3 |
16Q LOSS WILD-TYPE | 162 | 211 | 7 |
Figure S255. Get High-res Image Gene #68: '16q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D68V3.png)
P value = 0.071 (Fisher's exact test), Q value = 0.21
Table S256. Gene #68: '16q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
16Q LOSS MUTATED | 72 | 24 |
16Q LOSS WILD-TYPE | 270 | 53 |
Figure S256. Get High-res Image Gene #68: '16q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D68V4.png)
P value = 0.0177 (Fisher's exact test), Q value = 0.075
Table S257. Gene #68: '16q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
16Q LOSS MUTATED | 56 | 43 | 0 | 2 |
16Q LOSS WILD-TYPE | 256 | 100 | 5 | 13 |
Figure S257. Get High-res Image Gene #68: '16q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D68V7.png)
P value = 0.0406 (Wilcoxon-test), Q value = 0.14
Table S258. Gene #68: '16q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
16Q LOSS MUTATED | 91 | 0.6 (1.4) |
16Q LOSS WILD-TYPE | 310 | 0.4 (1.4) |
Figure S258. Get High-res Image Gene #68: '16q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D68V8.png)
P value = 4.42e-06 (Wilcoxon-test), Q value = 0.00017
Table S259. Gene #68: '16q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
16Q LOSS MUTATED | 106 | 8.0 (1.0) |
16Q LOSS WILD-TYPE | 385 | 7.5 (1.0) |
Figure S259. Get High-res Image Gene #68: '16q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D68V9.png)
P value = 0.00106 (Fisher's exact test), Q value = 0.011
Table S260. Gene #69: '17p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
17P LOSS MUTATED | 15 | 57 | 1 |
17P LOSS WILD-TYPE | 173 | 230 | 9 |
Figure S260. Get High-res Image Gene #69: '17p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D69V3.png)
P value = 0.0104 (Fisher's exact test), Q value = 0.05
Table S261. Gene #69: '17p loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
17P LOSS MUTATED | 49 | 21 |
17P LOSS WILD-TYPE | 293 | 56 |
Figure S261. Get High-res Image Gene #69: '17p loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D69V4.png)
P value = 0.0567 (Fisher's exact test), Q value = 0.18
Table S262. Gene #69: '17p loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
17P LOSS MUTATED | 40 | 32 | 0 | 2 |
17P LOSS WILD-TYPE | 272 | 111 | 5 | 13 |
Figure S262. Get High-res Image Gene #69: '17p loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D69V7.png)
P value = 0.00152 (Wilcoxon-test), Q value = 0.013
Table S263. Gene #69: '17p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
17P LOSS MUTATED | 66 | 0.9 (1.7) |
17P LOSS WILD-TYPE | 335 | 0.3 (1.3) |
Figure S263. Get High-res Image Gene #69: '17p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D69V8.png)
P value = 4.98e-06 (Wilcoxon-test), Q value = 0.00018
Table S264. Gene #69: '17p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
17P LOSS MUTATED | 75 | 8.1 (1.0) |
17P LOSS WILD-TYPE | 416 | 7.5 (1.0) |
Figure S264. Get High-res Image Gene #69: '17p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D69V9.png)
P value = 0.0413 (Wilcoxon-test), Q value = 0.14
Table S265. Gene #69: '17p loss' versus Clinical Feature #10: 'PSA_VALUE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 434 | 1.8 (16.0) |
17P LOSS MUTATED | 65 | 7.0 (40.3) |
17P LOSS WILD-TYPE | 369 | 0.9 (3.5) |
Figure S265. Get High-res Image Gene #69: '17p loss' versus Clinical Feature #10: 'PSA_VALUE'
![](D69V10.png)
P value = 0.0683 (logrank test), Q value = 0.21
Table S266. Gene #70: '17q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 489 | 9 | 0.7 - 165.2 (28.8) |
17Q LOSS MUTATED | 20 | 2 | 1.7 - 115.1 (33.5) |
17Q LOSS WILD-TYPE | 469 | 7 | 0.7 - 165.2 (28.8) |
Figure S266. Get High-res Image Gene #70: '17q loss' versus Clinical Feature #1: 'Time to Death'
![](D70V1.png)
P value = 0.0199 (Fisher's exact test), Q value = 0.079
Table S267. Gene #70: '17q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
17Q LOSS MUTATED | 2 | 17 | 0 |
17Q LOSS WILD-TYPE | 186 | 270 | 10 |
Figure S267. Get High-res Image Gene #70: '17q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D70V3.png)
P value = 0.0338 (Fisher's exact test), Q value = 0.12
Table S268. Gene #70: '17q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
17Q LOSS MUTATED | 7 | 11 | 0 | 1 |
17Q LOSS WILD-TYPE | 305 | 132 | 5 | 14 |
Figure S268. Get High-res Image Gene #70: '17q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D70V7.png)
P value = 0.00318 (Wilcoxon-test), Q value = 0.023
Table S269. Gene #70: '17q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
17Q LOSS MUTATED | 20 | 8.3 (1.0) |
17Q LOSS WILD-TYPE | 471 | 7.6 (1.0) |
Figure S269. Get High-res Image Gene #70: '17q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D70V9.png)
P value = 0.00622 (Fisher's exact test), Q value = 0.035
Table S270. Gene #71: '18p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
18P LOSS MUTATED | 17 | 46 | 4 |
18P LOSS WILD-TYPE | 171 | 241 | 6 |
Figure S270. Get High-res Image Gene #71: '18p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D71V3.png)
P value = 0.0887 (Fisher's exact test), Q value = 0.25
Table S271. Gene #71: '18p loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
18P LOSS MUTATED | 45 | 12 |
18P LOSS WILD-TYPE | 333 | 45 |
Figure S271. Get High-res Image Gene #71: '18p loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D71V5.png)
P value = 0.00493 (Fisher's exact test), Q value = 0.03
Table S272. Gene #71: '18p loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
18P LOSS MUTATED | 33 | 31 | 0 | 0 |
18P LOSS WILD-TYPE | 279 | 112 | 5 | 15 |
Figure S272. Get High-res Image Gene #71: '18p loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D71V7.png)
P value = 0.0857 (Wilcoxon-test), Q value = 0.24
Table S273. Gene #71: '18p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
18P LOSS MUTATED | 60 | 0.7 (1.5) |
18P LOSS WILD-TYPE | 341 | 0.4 (1.3) |
Figure S273. Get High-res Image Gene #71: '18p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D71V8.png)
P value = 6.43e-07 (Wilcoxon-test), Q value = 4.3e-05
Table S274. Gene #71: '18p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
18P LOSS MUTATED | 67 | 8.2 (1.0) |
18P LOSS WILD-TYPE | 424 | 7.5 (1.0) |
Figure S274. Get High-res Image Gene #71: '18p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D71V9.png)
P value = 0.00111 (Fisher's exact test), Q value = 0.011
Table S275. Gene #72: '18q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
18Q LOSS MUTATED | 24 | 71 | 4 |
18Q LOSS WILD-TYPE | 164 | 216 | 6 |
Figure S275. Get High-res Image Gene #72: '18q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D72V3.png)
P value = 0.000371 (Fisher's exact test), Q value = 0.0048
Table S276. Gene #72: '18q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
18Q LOSS MUTATED | 62 | 29 |
18Q LOSS WILD-TYPE | 280 | 48 |
Figure S276. Get High-res Image Gene #72: '18q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D72V4.png)
P value = 0.0206 (Fisher's exact test), Q value = 0.08
Table S277. Gene #72: '18q loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
18Q LOSS MUTATED | 68 | 18 |
18Q LOSS WILD-TYPE | 310 | 39 |
Figure S277. Get High-res Image Gene #72: '18q loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D72V5.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.001
Table S278. Gene #72: '18q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
18Q LOSS MUTATED | 47 | 49 | 0 | 2 |
18Q LOSS WILD-TYPE | 265 | 94 | 5 | 13 |
Figure S278. Get High-res Image Gene #72: '18q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D72V7.png)
P value = 0.000116 (Wilcoxon-test), Q value = 0.002
Table S279. Gene #72: '18q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
18Q LOSS MUTATED | 87 | 0.9 (2.3) |
18Q LOSS WILD-TYPE | 314 | 0.3 (0.9) |
Figure S279. Get High-res Image Gene #72: '18q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D72V8.png)
P value = 1.74e-08 (Wilcoxon-test), Q value = 3.2e-06
Table S280. Gene #72: '18q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
18Q LOSS MUTATED | 100 | 8.1 (1.0) |
18Q LOSS WILD-TYPE | 391 | 7.5 (1.0) |
Figure S280. Get High-res Image Gene #72: '18q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D72V9.png)
P value = 0.0123 (Wilcoxon-test), Q value = 0.056
Table S281. Gene #73: '19p loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
19P LOSS MUTATED | 17 | 64.7 (6.1) |
19P LOSS WILD-TYPE | 463 | 60.8 (6.8) |
Figure S281. Get High-res Image Gene #73: '19p loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D73V2.png)
P value = 0.0382 (Wilcoxon-test), Q value = 0.13
Table S282. Gene #73: '19p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
19P LOSS MUTATED | 17 | 8.1 (1.0) |
19P LOSS WILD-TYPE | 474 | 7.6 (1.0) |
Figure S282. Get High-res Image Gene #73: '19p loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D73V9.png)
P value = 0.0123 (Wilcoxon-test), Q value = 0.056
Table S283. Gene #74: '19q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
19Q LOSS MUTATED | 17 | 64.7 (6.1) |
19Q LOSS WILD-TYPE | 463 | 60.8 (6.8) |
Figure S283. Get High-res Image Gene #74: '19q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D74V2.png)
P value = 0.0382 (Wilcoxon-test), Q value = 0.13
Table S284. Gene #74: '19q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
19Q LOSS MUTATED | 17 | 8.1 (1.0) |
19Q LOSS WILD-TYPE | 474 | 7.6 (1.0) |
Figure S284. Get High-res Image Gene #74: '19q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D74V9.png)
P value = 0.0447 (Fisher's exact test), Q value = 0.15
Table S285. Gene #75: '20p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
20P LOSS MUTATED | 3 | 15 | 1 |
20P LOSS WILD-TYPE | 185 | 272 | 9 |
Figure S285. Get High-res Image Gene #75: '20p loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D75V3.png)
P value = 0.022 (Fisher's exact test), Q value = 0.084
Table S286. Gene #75: '20p loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
20P LOSS MUTATED | 10 | 7 |
20P LOSS WILD-TYPE | 332 | 70 |
Figure S286. Get High-res Image Gene #75: '20p loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D75V4.png)
P value = 0.0578 (Fisher's exact test), Q value = 0.18
Table S287. Gene #75: '20p loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
20P LOSS MUTATED | 12 | 5 |
20P LOSS WILD-TYPE | 366 | 52 |
Figure S287. Get High-res Image Gene #75: '20p loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D75V5.png)
P value = 0.00484 (Wilcoxon-test), Q value = 0.03
Table S288. Gene #75: '20p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
20P LOSS MUTATED | 16 | 1.4 (2.1) |
20P LOSS WILD-TYPE | 385 | 0.4 (1.3) |
Figure S288. Get High-res Image Gene #75: '20p loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D75V8.png)
P value = 0.048 (Fisher's exact test), Q value = 0.15
Table S289. Gene #76: '20q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
20Q LOSS MUTATED | 1 | 7 | 1 |
20Q LOSS WILD-TYPE | 187 | 280 | 9 |
Figure S289. Get High-res Image Gene #76: '20q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D76V3.png)
P value = 0.00211 (Fisher's exact test), Q value = 0.017
Table S290. Gene #77: '21q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
21Q LOSS MUTATED | 4 | 17 | 3 |
21Q LOSS WILD-TYPE | 184 | 270 | 7 |
Figure S290. Get High-res Image Gene #77: '21q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D77V3.png)
P value = 0.00371 (Fisher's exact test), Q value = 0.025
Table S291. Gene #77: '21q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
21Q LOSS MUTATED | 13 | 10 |
21Q LOSS WILD-TYPE | 329 | 67 |
Figure S291. Get High-res Image Gene #77: '21q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D77V4.png)
P value = 0.00124 (Wilcoxon-test), Q value = 0.012
Table S292. Gene #77: '21q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
21Q LOSS MUTATED | 22 | 1.1 (2.4) |
21Q LOSS WILD-TYPE | 379 | 0.4 (1.3) |
Figure S292. Get High-res Image Gene #77: '21q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D77V8.png)
P value = 0.000309 (Wilcoxon-test), Q value = 0.0042
Table S293. Gene #77: '21q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
21Q LOSS MUTATED | 24 | 8.3 (1.0) |
21Q LOSS WILD-TYPE | 467 | 7.6 (1.0) |
Figure S293. Get High-res Image Gene #77: '21q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D77V9.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00069
Table S294. Gene #78: '22q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
22Q LOSS MUTATED | 5 | 39 | 2 |
22Q LOSS WILD-TYPE | 183 | 248 | 8 |
Figure S294. Get High-res Image Gene #78: '22q loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D78V3.png)
P value = 0.000733 (Fisher's exact test), Q value = 0.0078
Table S295. Gene #78: '22q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
22Q LOSS MUTATED | 27 | 17 |
22Q LOSS WILD-TYPE | 315 | 60 |
Figure S295. Get High-res Image Gene #78: '22q loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D78V4.png)
P value = 0.011 (Fisher's exact test), Q value = 0.052
Table S296. Gene #78: '22q loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
22Q LOSS MUTATED | 29 | 11 |
22Q LOSS WILD-TYPE | 349 | 46 |
Figure S296. Get High-res Image Gene #78: '22q loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D78V5.png)
P value = 0.00893 (Fisher's exact test), Q value = 0.045
Table S297. Gene #78: '22q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 312 | 143 | 5 | 15 |
22Q LOSS MUTATED | 22 | 24 | 0 | 0 |
22Q LOSS WILD-TYPE | 290 | 119 | 5 | 15 |
Figure S297. Get High-res Image Gene #78: '22q loss' versus Clinical Feature #7: 'RESIDUAL_TUMOR'
![](D78V7.png)
P value = 0.000482 (Wilcoxon-test), Q value = 0.0059
Table S298. Gene #78: '22q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
22Q LOSS MUTATED | 43 | 0.9 (2.4) |
22Q LOSS WILD-TYPE | 358 | 0.4 (1.2) |
Figure S298. Get High-res Image Gene #78: '22q loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D78V8.png)
P value = 3.31e-08 (Wilcoxon-test), Q value = 4.4e-06
Table S299. Gene #78: '22q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
22Q LOSS MUTATED | 47 | 8.4 (0.9) |
22Q LOSS WILD-TYPE | 444 | 7.5 (1.0) |
Figure S299. Get High-res Image Gene #78: '22q loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D78V9.png)
P value = 0.0752 (Wilcoxon-test), Q value = 0.22
Table S300. Gene #78: '22q loss' versus Clinical Feature #10: 'PSA_VALUE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 434 | 1.8 (16.0) |
22Q LOSS MUTATED | 41 | 10.5 (50.4) |
22Q LOSS WILD-TYPE | 393 | 0.9 (3.8) |
Figure S300. Get High-res Image Gene #78: '22q loss' versus Clinical Feature #10: 'PSA_VALUE'
![](D78V10.png)
P value = 0.0575 (logrank test), Q value = 0.18
Table S301. Gene #79: 'xp loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 489 | 9 | 0.7 - 165.2 (28.8) |
XP LOSS MUTATED | 38 | 2 | 1.0 - 113.3 (38.1) |
XP LOSS WILD-TYPE | 451 | 7 | 0.7 - 165.2 (28.7) |
Figure S301. Get High-res Image Gene #79: 'xp loss' versus Clinical Feature #1: 'Time to Death'
![](D79V1.png)
P value = 0.0733 (Wilcoxon-test), Q value = 0.22
Table S302. Gene #79: 'xp loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
XP LOSS MUTATED | 38 | 62.8 (6.8) |
XP LOSS WILD-TYPE | 442 | 60.8 (6.8) |
Figure S302. Get High-res Image Gene #79: 'xp loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D79V2.png)
P value = 0.0112 (Fisher's exact test), Q value = 0.053
Table S303. Gene #79: 'xp loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
XP LOSS MUTATED | 7 | 28 | 2 |
XP LOSS WILD-TYPE | 181 | 259 | 8 |
Figure S303. Get High-res Image Gene #79: 'xp loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D79V3.png)
P value = 0.023 (Fisher's exact test), Q value = 0.087
Table S304. Gene #79: 'xp loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
XP LOSS MUTATED | 24 | 12 |
XP LOSS WILD-TYPE | 318 | 65 |
Figure S304. Get High-res Image Gene #79: 'xp loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D79V4.png)
P value = 0.033 (Fisher's exact test), Q value = 0.12
Table S305. Gene #79: 'xp loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
XP LOSS MUTATED | 26 | 9 |
XP LOSS WILD-TYPE | 352 | 48 |
Figure S305. Get High-res Image Gene #79: 'xp loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D79V5.png)
P value = 0.00782 (Wilcoxon-test), Q value = 0.04
Table S306. Gene #79: 'xp loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
XP LOSS MUTATED | 35 | 0.9 (1.6) |
XP LOSS WILD-TYPE | 366 | 0.4 (1.3) |
Figure S306. Get High-res Image Gene #79: 'xp loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D79V8.png)
P value = 1.45e-06 (Wilcoxon-test), Q value = 8e-05
Table S307. Gene #79: 'xp loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
XP LOSS MUTATED | 38 | 8.4 (0.9) |
XP LOSS WILD-TYPE | 453 | 7.5 (1.0) |
Figure S307. Get High-res Image Gene #79: 'xp loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D79V9.png)
P value = 0.0172 (Wilcoxon-test), Q value = 0.074
Table S308. Gene #79: 'xp loss' versus Clinical Feature #10: 'PSA_VALUE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 434 | 1.8 (16.0) |
XP LOSS MUTATED | 34 | 10.7 (55.2) |
XP LOSS WILD-TYPE | 400 | 1.0 (4.2) |
Figure S308. Get High-res Image Gene #79: 'xp loss' versus Clinical Feature #10: 'PSA_VALUE'
![](D79V10.png)
P value = 0.0575 (logrank test), Q value = 0.18
Table S309. Gene #80: 'xq loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 489 | 9 | 0.7 - 165.2 (28.8) |
XQ LOSS MUTATED | 38 | 2 | 1.0 - 113.3 (38.1) |
XQ LOSS WILD-TYPE | 451 | 7 | 0.7 - 165.2 (28.7) |
Figure S309. Get High-res Image Gene #80: 'xq loss' versus Clinical Feature #1: 'Time to Death'
![](D80V1.png)
P value = 0.0733 (Wilcoxon-test), Q value = 0.22
Table S310. Gene #80: 'xq loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 480 | 61.0 (6.8) |
XQ LOSS MUTATED | 38 | 62.8 (6.8) |
XQ LOSS WILD-TYPE | 442 | 60.8 (6.8) |
Figure S310. Get High-res Image Gene #80: 'xq loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D80V2.png)
P value = 0.0117 (Fisher's exact test), Q value = 0.055
Table S311. Gene #80: 'xq loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 188 | 287 | 10 |
XQ LOSS MUTATED | 7 | 28 | 2 |
XQ LOSS WILD-TYPE | 181 | 259 | 8 |
Figure S311. Get High-res Image Gene #80: 'xq loss' versus Clinical Feature #3: 'PATHOLOGY_T_STAGE'
![](D80V3.png)
P value = 0.023 (Fisher's exact test), Q value = 0.087
Table S312. Gene #80: 'xq loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 342 | 77 |
XQ LOSS MUTATED | 24 | 12 |
XQ LOSS WILD-TYPE | 318 | 65 |
Figure S312. Get High-res Image Gene #80: 'xq loss' versus Clinical Feature #4: 'PATHOLOGY_N_STAGE'
![](D80V4.png)
P value = 0.033 (Fisher's exact test), Q value = 0.12
Table S313. Gene #80: 'xq loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
nPatients | NO | YES |
---|---|---|
ALL | 378 | 57 |
XQ LOSS MUTATED | 26 | 9 |
XQ LOSS WILD-TYPE | 352 | 48 |
Figure S313. Get High-res Image Gene #80: 'xq loss' versus Clinical Feature #5: 'RADIATION_THERAPY'
![](D80V5.png)
P value = 0.00782 (Wilcoxon-test), Q value = 0.04
Table S314. Gene #80: 'xq loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 401 | 0.4 (1.4) |
XQ LOSS MUTATED | 35 | 0.9 (1.6) |
XQ LOSS WILD-TYPE | 366 | 0.4 (1.3) |
Figure S314. Get High-res Image Gene #80: 'xq loss' versus Clinical Feature #8: 'NUMBER_OF_LYMPH_NODES'
![](D80V8.png)
P value = 1.45e-06 (Wilcoxon-test), Q value = 8e-05
Table S315. Gene #80: 'xq loss' versus Clinical Feature #9: 'GLEASON_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 491 | 7.6 (1.0) |
XQ LOSS MUTATED | 38 | 8.4 (0.9) |
XQ LOSS WILD-TYPE | 453 | 7.5 (1.0) |
Figure S315. Get High-res Image Gene #80: 'xq loss' versus Clinical Feature #9: 'GLEASON_SCORE'
![](D80V9.png)
P value = 0.0172 (Wilcoxon-test), Q value = 0.074
Table S316. Gene #80: 'xq loss' versus Clinical Feature #10: 'PSA_VALUE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 434 | 1.8 (16.0) |
XQ LOSS MUTATED | 34 | 10.7 (55.2) |
XQ LOSS WILD-TYPE | 400 | 1.0 (4.2) |
Figure S316. Get High-res Image Gene #80: 'xq loss' versus Clinical Feature #10: 'PSA_VALUE'
![](D80V10.png)
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Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/19782427/transformed.cor.cli.txt
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Clinical data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PRAD-TP/19775467/PRAD-TP.merged_data.txt
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Number of patients = 491
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Number of significantly arm-level cnvs = 80
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Number of selected clinical features = 11
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Exclude regions that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.