This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 80 arm-level events and 10 molecular subtypes across 492 patients, 352 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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1q gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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2p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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2q gain cnv correlated to 'CN_CNMF'.
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3p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p gain cnv correlated to 'CN_CNMF'.
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5p gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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6p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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6q gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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7p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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9q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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11q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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12p gain cnv correlated to 'CN_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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12q gain cnv correlated to 'CN_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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13q gain cnv correlated to 'CN_CNMF'.
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14q gain cnv correlated to 'CN_CNMF'.
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15q gain cnv correlated to 'CN_CNMF'.
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16p gain cnv correlated to 'CN_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q gain cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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17p gain cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p gain cnv correlated to 'CN_CNMF'.
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18q gain cnv correlated to 'CN_CNMF'.
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19p gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CNMF'.
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19q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xp gain cnv correlated to 'CN_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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xq gain cnv correlated to 'CN_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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1p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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2p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3p loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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3q loss cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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4p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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5q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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9p loss cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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9q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11p loss cnv correlated to 'CN_CNMF'.
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11q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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12p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q loss cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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14q loss cnv correlated to 'CN_CNMF'.
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15q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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18p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p loss cnv correlated to 'CN_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q loss cnv correlated to 'CN_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20p loss cnv correlated to 'CN_CNMF'.
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20q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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21q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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22q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xp loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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xq loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 80 arm-level events and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 352 significant findings detected.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
3p gain | 40 (8%) | 452 |
1e-05 (0.000143) |
0.0102 (0.036) |
0.0406 (0.0961) |
0.0268 (0.0742) |
0.00468 (0.0195) |
0.00039 (0.00288) |
0.0216 (0.0627) |
0.00509 (0.0208) |
0.00371 (0.0163) |
0.00025 (0.00198) |
3q gain | 54 (11%) | 438 |
1e-05 (0.000143) |
0.00754 (0.0278) |
0.027 (0.0742) |
0.0258 (0.0725) |
0.00112 (0.00654) |
0.0013 (0.00727) |
0.00529 (0.0213) |
0.00391 (0.0171) |
0.0148 (0.0472) |
2e-05 (0.000262) |
8q gain | 124 (25%) | 368 |
1e-05 (0.000143) |
1e-05 (0.000143) |
0.00013 (0.00116) |
0.00038 (0.00284) |
5e-05 (0.000548) |
3e-05 (0.000358) |
0.00046 (0.00323) |
1e-05 (0.000143) |
1e-05 (0.000143) |
3e-05 (0.000358) |
6q loss | 40 (8%) | 452 |
1e-05 (0.000143) |
0.0347 (0.0872) |
0.0262 (0.0731) |
0.028 (0.0758) |
0.00031 (0.00238) |
0.00092 (0.00575) |
0.0129 (0.0431) |
0.0482 (0.11) |
0.00438 (0.0183) |
0.00198 (0.01) |
18q loss | 101 (21%) | 391 |
1e-05 (0.000143) |
0.00629 (0.0243) |
0.00037 (0.00279) |
0.0014 (0.00762) |
0.00332 (0.0151) |
0.0215 (0.0627) |
0.00725 (0.0269) |
0.00334 (0.0151) |
0.0151 (0.0477) |
1e-05 (0.000143) |
8p gain | 71 (14%) | 421 |
1e-05 (0.000143) |
1e-05 (0.000143) |
8e-05 (0.00078) |
0.00048 (0.00325) |
6e-05 (0.000615) |
0.00048 (0.00325) |
0.126 (0.213) |
0.00591 (0.0231) |
0.00207 (0.0103) |
0.00187 (0.00965) |
4p loss | 24 (5%) | 468 |
1e-05 (0.000143) |
0.0181 (0.0551) |
0.0376 (0.0917) |
0.128 (0.215) |
0.0043 (0.0181) |
0.0286 (0.0774) |
0.00131 (0.00728) |
0.00259 (0.0126) |
4e-05 (0.000464) |
7e-05 (7e-04) |
18p loss | 68 (14%) | 424 |
1e-05 (0.000143) |
0.00548 (0.0219) |
0.0101 (0.0358) |
0.0032 (0.0149) |
0.00329 (0.0151) |
0.0489 (0.111) |
0.0582 (0.126) |
0.0302 (0.0803) |
0.0102 (0.036) |
0.00505 (0.0207) |
7p gain | 102 (21%) | 390 |
1e-05 (0.000143) |
1e-05 (0.000143) |
0.229 (0.326) |
0.299 (0.407) |
1e-05 (0.000143) |
3e-05 (0.000358) |
0.0184 (0.0557) |
5e-05 (0.000548) |
0.00023 (0.00186) |
0.00168 (0.00895) |
7q gain | 95 (19%) | 397 |
1e-05 (0.000143) |
1e-05 (0.000143) |
0.303 (0.411) |
0.64 (0.72) |
1e-05 (0.000143) |
4e-05 (0.000464) |
0.0242 (0.0687) |
9e-05 (0.000857) |
0.0004 (0.00288) |
0.00549 (0.0219) |
20p gain | 26 (5%) | 466 |
1e-05 (0.000143) |
0.0222 (0.0644) |
0.221 (0.319) |
0.146 (0.237) |
0.0233 (0.0665) |
0.0367 (0.0901) |
0.00203 (0.0101) |
0.00401 (0.0173) |
0.0313 (0.0817) |
0.00407 (0.0174) |
21q gain | 21 (4%) | 471 |
1e-05 (0.000143) |
0.0388 (0.0924) |
0.541 (0.639) |
0.843 (0.898) |
0.00179 (0.00935) |
0.0268 (0.0742) |
0.0145 (0.0469) |
0.00321 (0.0149) |
0.0121 (0.0413) |
0.0292 (0.0784) |
1p loss | 22 (4%) | 470 |
1e-05 (0.000143) |
0.00057 (0.0038) |
0.541 (0.639) |
0.869 (0.913) |
0.00117 (0.00673) |
0.00026 (0.00204) |
0.0252 (0.0711) |
0.00361 (0.016) |
0.0204 (0.0608) |
0.013 (0.0432) |
10q loss | 43 (9%) | 449 |
1e-05 (0.000143) |
0.00078 (0.00495) |
0.352 (0.46) |
0.163 (0.253) |
0.00221 (0.0108) |
0.0004 (0.00288) |
0.0384 (0.092) |
0.00125 (0.00704) |
0.00178 (0.00935) |
0.00012 (0.00108) |
15q loss | 36 (7%) | 456 |
1e-05 (0.000143) |
0.0018 (0.00935) |
0.14 (0.23) |
0.408 (0.519) |
0.00067 (0.00439) |
0.00616 (0.0239) |
0.00012 (0.00108) |
0.00726 (0.0269) |
0.00116 (0.00672) |
0.00018 (0.00155) |
17p loss | 76 (15%) | 416 |
1e-05 (0.000143) |
0.00122 (0.00692) |
0.0223 (0.0645) |
0.154 (0.246) |
0.00012 (0.00108) |
0.00168 (0.00895) |
0.0989 (0.183) |
0.0319 (0.0826) |
0.0225 (0.0646) |
7e-05 (7e-04) |
5p gain | 23 (5%) | 469 |
1e-05 (0.000143) |
0.0591 (0.128) |
0.0275 (0.0752) |
0.191 (0.283) |
0.00882 (0.0319) |
0.0614 (0.132) |
0.00122 (0.00692) |
0.00152 (0.00822) |
0.00191 (0.00979) |
0.00403 (0.0173) |
6p loss | 25 (5%) | 467 |
1e-05 (0.000143) |
0.0153 (0.0481) |
0.168 (0.26) |
0.0575 (0.126) |
0.00027 (0.0021) |
0.00283 (0.0135) |
0.0576 (0.126) |
0.0313 (0.0817) |
0.0144 (0.0469) |
0.00354 (0.0159) |
10p loss | 41 (8%) | 451 |
1e-05 (0.000143) |
5e-05 (0.000548) |
0.21 (0.306) |
0.315 (0.423) |
0.0002 (0.00167) |
6e-05 (0.000615) |
0.0838 (0.166) |
6e-05 (0.000615) |
0.0114 (0.0393) |
0.00014 (0.00123) |
16q loss | 107 (22%) | 385 |
1e-05 (0.000143) |
0.00075 (0.0048) |
0.968 (0.995) |
0.954 (0.984) |
0.0301 (0.0802) |
0.0309 (0.0811) |
0.0812 (0.162) |
0.00045 (0.00319) |
0.00428 (0.0181) |
8e-05 (0.00078) |
17q loss | 20 (4%) | 472 |
1e-05 (0.000143) |
0.0108 (0.0375) |
0.592 (0.677) |
0.527 (0.625) |
0.00095 (0.00589) |
0.0358 (0.0885) |
0.0127 (0.0427) |
0.0466 (0.107) |
0.0306 (0.0808) |
0.146 (0.238) |
xp loss | 39 (8%) | 453 |
1e-05 (0.000143) |
3e-05 (0.000358) |
0.113 (0.195) |
0.0846 (0.166) |
0.00041 (0.00293) |
5e-05 (0.000548) |
1e-05 (0.000143) |
0.0359 (0.0885) |
0.00573 (0.0226) |
0.0963 (0.18) |
xq loss | 39 (8%) | 453 |
1e-05 (0.000143) |
1e-05 (0.000143) |
0.113 (0.195) |
0.0833 (0.165) |
0.0004 (0.00288) |
0.00011 (0.00104) |
1e-05 (0.000143) |
0.0346 (0.0872) |
0.00592 (0.0231) |
0.0958 (0.18) |
20q gain | 28 (6%) | 464 |
1e-05 (0.000143) |
0.0196 (0.0592) |
0.342 (0.448) |
0.034 (0.0864) |
0.0551 (0.123) |
0.125 (0.212) |
0.0114 (0.0393) |
0.0079 (0.029) |
0.1 (0.184) |
0.00929 (0.0335) |
5q loss | 22 (4%) | 470 |
1e-05 (0.000143) |
0.00279 (0.0134) |
0.103 (0.184) |
0.285 (0.392) |
0.012 (0.041) |
0.002 (0.0101) |
0.0573 (0.126) |
0.00112 (0.00654) |
0.111 (0.193) |
0.027 (0.0742) |
8p loss | 168 (34%) | 324 |
1e-05 (0.000143) |
1e-05 (0.000143) |
0.848 (0.899) |
0.387 (0.499) |
1e-05 (0.000143) |
1e-05 (0.000143) |
0.00035 (0.00267) |
0.0799 (0.16) |
0.058 (0.126) |
0.0316 (0.0821) |
1q gain | 26 (5%) | 466 |
1e-05 (0.000143) |
0.142 (0.233) |
0.0422 (0.0985) |
0.211 (0.307) |
0.00016 (0.00139) |
0.00054 (0.00363) |
0.0975 (0.181) |
0.0332 (0.0852) |
0.502 (0.607) |
0.195 (0.289) |
9q gain | 50 (10%) | 442 |
1e-05 (0.000143) |
0.118 (0.202) |
0.295 (0.403) |
0.0917 (0.176) |
0.0154 (0.0484) |
0.19 (0.282) |
0.357 (0.464) |
0.0109 (0.0376) |
0.00702 (0.0264) |
0.0139 (0.0456) |
10p gain | 15 (3%) | 477 |
6e-05 (0.000615) |
0.0344 (0.0871) |
0.545 (0.642) |
0.801 (0.863) |
0.105 (0.186) |
0.0337 (0.0859) |
0.574 (0.665) |
0.0135 (0.0445) |
0.172 (0.265) |
0.0007 (0.00452) |
2q loss | 18 (4%) | 474 |
0.00012 (0.00108) |
0.0207 (0.0609) |
0.478 (0.589) |
0.886 (0.928) |
0.723 (0.792) |
0.485 (0.595) |
0.127 (0.214) |
0.0349 (0.0872) |
0.00855 (0.0312) |
0.00099 (0.00609) |
4q loss | 17 (3%) | 475 |
1e-05 (0.000143) |
0.154 (0.246) |
0.593 (0.678) |
0.827 (0.887) |
0.0065 (0.0248) |
0.105 (0.186) |
0.202 (0.296) |
0.0484 (0.111) |
0.0147 (0.0471) |
0.00504 (0.0207) |
9p loss | 21 (4%) | 471 |
1e-05 (0.000143) |
0.285 (0.392) |
0.00721 (0.0269) |
0.00528 (0.0213) |
0.00423 (0.018) |
0.0225 (0.0646) |
0.263 (0.367) |
0.242 (0.344) |
0.107 (0.188) |
0.0633 (0.134) |
12p loss | 48 (10%) | 444 |
1e-05 (0.000143) |
0.298 (0.407) |
0.138 (0.229) |
0.525 (0.624) |
0.0495 (0.113) |
0.418 (0.528) |
0.456 (0.568) |
0.0167 (0.0515) |
0.00697 (0.0263) |
0.00277 (0.0133) |
13q loss | 77 (16%) | 415 |
1e-05 (0.000143) |
0.331 (0.438) |
0.499 (0.605) |
0.0125 (0.0424) |
0.0417 (0.0977) |
0.0649 (0.137) |
0.182 (0.274) |
0.0407 (0.0961) |
0.227 (0.324) |
0.0002 (0.00167) |
22q loss | 47 (10%) | 445 |
1e-05 (0.000143) |
0.213 (0.309) |
0.0887 (0.172) |
0.373 (0.482) |
0.0181 (0.0551) |
0.0469 (0.108) |
0.0691 (0.144) |
0.029 (0.078) |
0.148 (0.24) |
0.00022 (0.0018) |
1p gain | 16 (3%) | 476 |
1e-05 (0.000143) |
0.204 (0.298) |
0.0911 (0.175) |
0.279 (0.384) |
0.00977 (0.035) |
0.00062 (0.0041) |
0.312 (0.421) |
0.0419 (0.098) |
0.848 (0.899) |
0.175 (0.267) |
16p gain | 31 (6%) | 461 |
1e-05 (0.000143) |
0.265 (0.369) |
0.56 (0.652) |
0.859 (0.907) |
0.0702 (0.145) |
0.318 (0.426) |
0.155 (0.246) |
0.00398 (0.0173) |
0.0262 (0.0731) |
0.0127 (0.0427) |
17p gain | 8 (2%) | 484 |
0.0147 (0.0471) |
0.911 (0.946) |
0.334 (0.441) |
1 (1.00) |
0.0501 (0.113) |
0.663 (0.739) |
0.0208 (0.061) |
0.0165 (0.0513) |
0.606 (0.687) |
0.00361 (0.016) |
2p loss | 16 (3%) | 476 |
9e-05 (0.000857) |
0.00517 (0.021) |
0.176 (0.267) |
0.591 (0.677) |
0.481 (0.591) |
0.353 (0.461) |
0.134 (0.223) |
0.0874 (0.17) |
0.00367 (0.0162) |
0.00332 (0.0151) |
5p loss | 12 (2%) | 480 |
2e-05 (0.000262) |
0.17 (0.262) |
0.911 (0.946) |
0.551 (0.647) |
0.0388 (0.0924) |
0.00557 (0.0221) |
0.864 (0.91) |
0.00291 (0.0138) |
0.51 (0.609) |
0.103 (0.184) |
8q loss | 24 (5%) | 468 |
0.0295 (0.0789) |
0.00112 (0.00654) |
0.712 (0.782) |
0.416 (0.527) |
0.0104 (0.0365) |
0.0249 (0.0704) |
0.103 (0.184) |
0.992 (1.00) |
0.216 (0.312) |
0.248 (0.352) |
2p gain | 10 (2%) | 482 |
0.00104 (0.0063) |
0.0765 (0.155) |
0.425 (0.535) |
0.446 (0.559) |
0.00675 (0.0256) |
0.143 (0.233) |
0.113 (0.195) |
0.0365 (0.0897) |
0.165 (0.256) |
0.188 (0.281) |
10q gain | 14 (3%) | 478 |
0.00025 (0.00198) |
0.0572 (0.126) |
0.0723 (0.149) |
0.0926 (0.176) |
0.129 (0.215) |
0.0323 (0.0831) |
0.585 (0.673) |
0.0864 (0.168) |
0.273 (0.377) |
0.00197 (0.01) |
11p gain | 26 (5%) | 466 |
1e-05 (0.000143) |
0.0553 (0.123) |
1 (1.00) |
0.454 (0.566) |
0.0943 (0.179) |
0.0146 (0.047) |
0.6 (0.683) |
0.0536 (0.12) |
0.0356 (0.0885) |
0.177 (0.269) |
11q gain | 29 (6%) | 463 |
1e-05 (0.000143) |
0.0736 (0.151) |
0.955 (0.985) |
0.406 (0.518) |
0.0306 (0.0808) |
0.0383 (0.092) |
0.69 (0.761) |
0.0509 (0.114) |
0.0846 (0.166) |
0.125 (0.212) |
12p gain | 14 (3%) | 478 |
2e-05 (0.000262) |
0.185 (0.276) |
0.781 (0.844) |
0.487 (0.595) |
0.0889 (0.172) |
0.114 (0.195) |
0.364 (0.473) |
0.00106 (0.00638) |
0.0238 (0.0678) |
0.207 (0.303) |
12q gain | 17 (3%) | 475 |
0.00048 (0.00325) |
0.0827 (0.165) |
0.48 (0.59) |
0.622 (0.702) |
0.2 (0.294) |
0.111 (0.193) |
0.781 (0.844) |
0.0198 (0.0597) |
0.0157 (0.0492) |
0.096 (0.18) |
17q gain | 11 (2%) | 481 |
0.00047 (0.00325) |
0.803 (0.863) |
0.779 (0.843) |
0.957 (0.986) |
0.0172 (0.0529) |
0.216 (0.312) |
0.0903 (0.174) |
0.11 (0.193) |
0.476 (0.587) |
0.00068 (0.00442) |
19p gain | 12 (2%) | 480 |
1e-05 (0.000143) |
0.159 (0.248) |
0.015 (0.0477) |
0.298 (0.406) |
0.0357 (0.0885) |
0.342 (0.448) |
0.14 (0.229) |
0.0861 (0.168) |
0.514 (0.613) |
0.122 (0.207) |
xp gain | 7 (1%) | 485 |
0.00107 (0.00639) |
0.0661 (0.139) |
1 (1.00) |
0.838 (0.895) |
0.102 (0.184) |
0.0921 (0.176) |
0.51 (0.609) |
0.0444 (0.103) |
0.00638 (0.0244) |
0.0858 (0.168) |
xq gain | 7 (1%) | 485 |
0.00104 (0.0063) |
0.0661 (0.139) |
1 (1.00) |
0.838 (0.895) |
0.101 (0.184) |
0.0924 (0.176) |
0.507 (0.609) |
0.0461 (0.106) |
0.00638 (0.0244) |
0.086 (0.168) |
19p loss | 17 (3%) | 475 |
0.00021 (0.00173) |
0.0571 (0.126) |
0.646 (0.722) |
0.253 (0.356) |
0.305 (0.412) |
0.159 (0.248) |
0.131 (0.219) |
0.158 (0.248) |
0.003 (0.0141) |
0.00996 (0.0356) |
19q loss | 17 (3%) | 475 |
0.00019 (0.00162) |
0.0549 (0.122) |
0.644 (0.722) |
0.255 (0.357) |
0.304 (0.411) |
0.16 (0.248) |
0.131 (0.219) |
0.159 (0.248) |
0.00268 (0.013) |
0.0107 (0.0374) |
21q loss | 24 (5%) | 468 |
3e-05 (0.000358) |
0.0683 (0.142) |
0.153 (0.246) |
0.158 (0.248) |
0.00324 (0.015) |
0.323 (0.43) |
0.571 (0.663) |
0.103 (0.184) |
0.425 (0.535) |
0.0414 (0.0974) |
5q gain | 12 (2%) | 480 |
2e-05 (0.000262) |
0.171 (0.264) |
0.588 (0.675) |
0.579 (0.669) |
0.0349 (0.0872) |
0.23 (0.327) |
0.38 (0.491) |
0.159 (0.248) |
0.123 (0.209) |
0.324 (0.43) |
6p gain | 10 (2%) | 482 |
0.00136 (0.00745) |
0.159 (0.248) |
0.174 (0.266) |
0.404 (0.517) |
0.139 (0.229) |
0.272 (0.377) |
0.67 (0.743) |
0.106 (0.187) |
0.0177 (0.0542) |
0.0745 (0.152) |
6q gain | 6 (1%) | 486 |
0.0202 (0.0607) |
0.79 (0.852) |
0.828 (0.887) |
0.913 (0.948) |
0.102 (0.184) |
0.582 (0.671) |
0.196 (0.289) |
0.0392 (0.0931) |
0.27 (0.374) |
0.568 (0.661) |
9p gain | 34 (7%) | 458 |
1e-05 (0.000143) |
0.1 (0.184) |
0.703 (0.774) |
0.128 (0.215) |
0.0785 (0.158) |
0.0984 (0.182) |
0.485 (0.595) |
0.111 (0.193) |
0.0161 (0.0501) |
0.18 (0.272) |
19q gain | 12 (2%) | 480 |
1e-05 (0.000143) |
0.102 (0.184) |
0.152 (0.245) |
0.109 (0.192) |
0.0383 (0.092) |
0.367 (0.475) |
0.218 (0.315) |
0.0615 (0.132) |
0.507 (0.609) |
0.155 (0.246) |
1q loss | 6 (1%) | 486 |
0.0204 (0.0608) |
0.154 (0.246) |
0.679 (0.752) |
0.473 (0.585) |
0.0432 (0.101) |
0.0949 (0.179) |
0.101 (0.184) |
0.102 (0.184) |
0.0511 (0.114) |
0.393 (0.506) |
3p loss | 9 (2%) | 483 |
0.0337 (0.0859) |
0.313 (0.421) |
0.518 (0.617) |
0.205 (0.3) |
0.106 (0.187) |
0.0382 (0.092) |
0.104 (0.186) |
0.411 (0.521) |
0.0503 (0.114) |
0.195 (0.289) |
9q loss | 10 (2%) | 482 |
0.00134 (0.00739) |
0.34 (0.446) |
0.197 (0.291) |
0.15 (0.242) |
0.262 (0.367) |
0.227 (0.324) |
0.615 (0.695) |
0.55 (0.647) |
0.52 (0.618) |
0.0373 (0.0913) |
11q loss | 5 (1%) | 487 |
0.0135 (0.0445) |
0.0694 (0.144) |
1 (1.00) |
0.889 (0.928) |
0.0621 (0.133) |
0.302 (0.41) |
0.634 (0.714) |
0.185 (0.276) |
0.0205 (0.0608) |
0.288 (0.395) |
12q loss | 20 (4%) | 472 |
3e-05 (0.000358) |
0.181 (0.274) |
0.504 (0.608) |
0.333 (0.44) |
0.253 (0.357) |
0.264 (0.368) |
1 (1.00) |
0.051 (0.114) |
0.0683 (0.142) |
0.00877 (0.0319) |
16p loss | 32 (7%) | 460 |
0.00169 (0.00895) |
0.336 (0.442) |
1 (1.00) |
0.139 (0.229) |
0.49 (0.596) |
0.379 (0.49) |
0.645 (0.722) |
0.319 (0.426) |
0.224 (0.321) |
0.0308 (0.0811) |
20q loss | 9 (2%) | 483 |
0.0275 (0.0752) |
0.0787 (0.158) |
1 (1.00) |
0.772 (0.839) |
0.0941 (0.179) |
0.0382 (0.092) |
0.0733 (0.15) |
0.06 (0.129) |
1 (1.00) |
0.503 (0.607) |
2q gain | 7 (1%) | 485 |
0.00092 (0.00575) |
0.469 (0.581) |
0.849 (0.899) |
0.688 (0.761) |
0.102 (0.184) |
0.555 (0.65) |
0.51 (0.609) |
0.0625 (0.133) |
0.176 (0.267) |
0.159 (0.248) |
4p gain | 9 (2%) | 483 |
0.0277 (0.0754) |
0.847 (0.899) |
0.148 (0.24) |
0.417 (0.527) |
0.489 (0.596) |
0.766 (0.835) |
0.917 (0.95) |
0.414 (0.525) |
0.605 (0.686) |
0.576 (0.667) |
13q gain | 8 (2%) | 484 |
0.0144 (0.0469) |
0.139 (0.229) |
0.0961 (0.18) |
0.849 (0.899) |
0.605 (0.686) |
0.663 (0.739) |
0.822 (0.883) |
0.558 (0.651) |
0.739 (0.807) |
0.868 (0.913) |
14q gain | 10 (2%) | 482 |
6e-05 (0.000615) |
0.158 (0.248) |
0.468 (0.58) |
0.779 (0.843) |
0.0826 (0.165) |
0.229 (0.326) |
0.113 (0.195) |
0.254 (0.357) |
0.493 (0.598) |
0.465 (0.578) |
15q gain | 6 (1%) | 486 |
0.0207 (0.0609) |
1 (1.00) |
0.427 (0.536) |
0.889 (0.928) |
0.877 (0.921) |
0.669 (0.743) |
0.777 (0.843) |
0.18 (0.272) |
0.706 (0.776) |
0.321 (0.429) |
16q gain | 8 (2%) | 484 |
0.0833 (0.165) |
0.5 (0.606) |
0.58 (0.669) |
0.771 (0.839) |
0.605 (0.686) |
0.903 (0.942) |
0.102 (0.184) |
0.0129 (0.0431) |
0.646 (0.722) |
0.543 (0.641) |
18p gain | 18 (4%) | 474 |
2e-05 (0.000262) |
0.357 (0.464) |
0.738 (0.807) |
0.953 (0.984) |
0.139 (0.229) |
0.507 (0.609) |
0.688 (0.761) |
0.613 (0.693) |
0.726 (0.794) |
0.45 (0.562) |
18q gain | 9 (2%) | 483 |
0.0049 (0.0203) |
1 (1.00) |
0.111 (0.193) |
1 (1.00) |
0.104 (0.185) |
0.91 (0.946) |
0.642 (0.721) |
0.438 (0.549) |
0.451 (0.562) |
0.665 (0.739) |
3q loss | 5 (1%) | 487 |
0.304 (0.411) |
1 (1.00) |
0.331 (0.438) |
0.251 (0.355) |
0.157 (0.248) |
0.0322 (0.0831) |
||||
11p loss | 8 (2%) | 484 |
0.00214 (0.0106) |
0.0778 (0.157) |
0.597 (0.681) |
0.702 (0.774) |
0.266 (0.369) |
0.117 (0.201) |
0.322 (0.43) |
0.26 (0.364) |
0.114 (0.196) |
0.102 (0.184) |
14q loss | 25 (5%) | 467 |
1e-05 (0.000143) |
0.0581 (0.126) |
0.182 (0.274) |
0.84 (0.896) |
0.0763 (0.155) |
0.0973 (0.181) |
0.404 (0.517) |
0.0648 (0.137) |
0.0971 (0.181) |
0.0681 (0.142) |
20p loss | 19 (4%) | 473 |
0.0377 (0.0917) |
0.0629 (0.134) |
1 (1.00) |
0.953 (0.984) |
0.222 (0.319) |
0.182 (0.274) |
0.491 (0.596) |
0.185 (0.276) |
1 (1.00) |
0.583 (0.671) |
4q gain | 10 (2%) | 482 |
0.0738 (0.151) |
0.487 (0.595) |
0.273 (0.377) |
0.403 (0.517) |
1 (1.00) |
0.558 (0.651) |
0.852 (0.901) |
0.176 (0.267) |
0.154 (0.246) |
0.0718 (0.148) |
22q gain | 4 (1%) | 488 |
0.0947 (0.179) |
0.551 (0.647) |
1 (1.00) |
0.889 (0.928) |
0.558 (0.651) |
0.224 (0.321) |
0.325 (0.431) |
0.407 (0.519) |
0.404 (0.517) |
0.159 (0.248) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S1. Gene #1: '1p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
1P GAIN MUTATED | 2 | 14 | 0 |
1P GAIN WILD-TYPE | 271 | 120 | 85 |
Figure S1. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D1V1.png)
P value = 0.00977 (Fisher's exact test), Q value = 0.035
Table S2. Gene #1: '1p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
1P GAIN MUTATED | 0 | 8 | 8 |
1P GAIN WILD-TYPE | 146 | 163 | 166 |
Figure S2. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D1V5.png)
P value = 0.00062 (Fisher's exact test), Q value = 0.0041
Table S3. Gene #1: '1p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
1P GAIN MUTATED | 0 | 13 | 3 |
1P GAIN WILD-TYPE | 171 | 192 | 112 |
Figure S3. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D1V6.png)
P value = 0.0419 (Fisher's exact test), Q value = 0.098
Table S4. Gene #1: '1p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
1P GAIN MUTATED | 1 | 4 | 1 | 9 | 1 |
1P GAIN WILD-TYPE | 146 | 94 | 58 | 119 | 55 |
Figure S4. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D1V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S5. Gene #2: '1q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
1Q GAIN MUTATED | 5 | 21 | 0 |
1Q GAIN WILD-TYPE | 268 | 113 | 85 |
Figure S5. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D2V1.png)
P value = 0.0422 (Fisher's exact test), Q value = 0.099
Table S6. Gene #2: '1q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
1Q GAIN MUTATED | 5 | 1 | 15 |
1Q GAIN WILD-TYPE | 118 | 67 | 141 |
Figure S6. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D2V3.png)
P value = 0.00016 (Fisher's exact test), Q value = 0.0014
Table S7. Gene #2: '1q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
1Q GAIN MUTATED | 0 | 10 | 16 |
1Q GAIN WILD-TYPE | 146 | 161 | 158 |
Figure S7. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D2V5.png)
P value = 0.00054 (Fisher's exact test), Q value = 0.0036
Table S8. Gene #2: '1q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
1Q GAIN MUTATED | 1 | 15 | 10 |
1Q GAIN WILD-TYPE | 170 | 190 | 105 |
Figure S8. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D2V6.png)
P value = 0.0332 (Fisher's exact test), Q value = 0.085
Table S9. Gene #2: '1q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
1Q GAIN MUTATED | 4 | 4 | 3 | 14 | 1 |
1Q GAIN WILD-TYPE | 143 | 94 | 56 | 114 | 55 |
Figure S9. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D2V8.png)
P value = 0.00104 (Fisher's exact test), Q value = 0.0063
Table S10. Gene #3: '2p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
2P GAIN MUTATED | 1 | 8 | 1 |
2P GAIN WILD-TYPE | 272 | 126 | 84 |
Figure S10. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D3V1.png)
P value = 0.00675 (Fisher's exact test), Q value = 0.026
Table S11. Gene #3: '2p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
2P GAIN MUTATED | 0 | 8 | 2 |
2P GAIN WILD-TYPE | 146 | 163 | 172 |
Figure S11. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D3V5.png)
P value = 0.0365 (Fisher's exact test), Q value = 0.09
Table S12. Gene #3: '2p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
2P GAIN MUTATED | 0 | 4 | 0 | 5 | 1 |
2P GAIN WILD-TYPE | 147 | 94 | 59 | 123 | 55 |
Figure S12. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D3V8.png)
P value = 0.00092 (Fisher's exact test), Q value = 0.0057
Table S13. Gene #4: '2q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
2Q GAIN MUTATED | 0 | 6 | 1 |
2Q GAIN WILD-TYPE | 273 | 128 | 84 |
Figure S13. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D4V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S14. Gene #5: '3p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
3P GAIN MUTATED | 3 | 32 | 5 |
3P GAIN WILD-TYPE | 270 | 102 | 80 |
Figure S14. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D5V1.png)
P value = 0.0102 (Fisher's exact test), Q value = 0.036
Table S15. Gene #5: '3p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
3P GAIN MUTATED | 7 | 22 | 11 |
3P GAIN WILD-TYPE | 153 | 143 | 156 |
Figure S15. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D5V2.png)
P value = 0.0406 (Fisher's exact test), Q value = 0.096
Table S16. Gene #5: '3p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
3P GAIN MUTATED | 7 | 2 | 19 |
3P GAIN WILD-TYPE | 116 | 66 | 137 |
Figure S16. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D5V3.png)
P value = 0.0268 (Fisher's exact test), Q value = 0.074
Table S17. Gene #5: '3p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
3P GAIN MUTATED | 2 | 13 | 4 | 9 |
3P GAIN WILD-TYPE | 72 | 100 | 88 | 59 |
Figure S17. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D5V4.png)
P value = 0.00468 (Fisher's exact test), Q value = 0.019
Table S18. Gene #5: '3p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
3P GAIN MUTATED | 5 | 23 | 12 |
3P GAIN WILD-TYPE | 141 | 148 | 162 |
Figure S18. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D5V5.png)
P value = 0.00039 (Fisher's exact test), Q value = 0.0029
Table S19. Gene #5: '3p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
3P GAIN MUTATED | 4 | 27 | 9 |
3P GAIN WILD-TYPE | 167 | 178 | 106 |
Figure S19. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D5V6.png)
P value = 0.0216 (Fisher's exact test), Q value = 0.063
Table S20. Gene #5: '3p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
3P GAIN MUTATED | 8 | 8 | 23 |
3P GAIN WILD-TYPE | 150 | 139 | 160 |
Figure S20. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D5V7.png)
P value = 0.00509 (Fisher's exact test), Q value = 0.021
Table S21. Gene #5: '3p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
3P GAIN MUTATED | 7 | 6 | 2 | 21 | 3 |
3P GAIN WILD-TYPE | 140 | 92 | 57 | 107 | 53 |
Figure S21. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D5V8.png)
P value = 0.00371 (Fisher's exact test), Q value = 0.016
Table S22. Gene #5: '3p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
3P GAIN MUTATED | 0 | 15 | 3 | 6 |
3P GAIN WILD-TYPE | 62 | 91 | 57 | 84 |
Figure S22. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D5V9.png)
P value = 0.00025 (Fisher's exact test), Q value = 0.002
Table S23. Gene #5: '3p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
3P GAIN MUTATED | 2 | 2 | 11 | 7 | 0 | 2 |
3P GAIN WILD-TYPE | 68 | 39 | 29 | 75 | 25 | 58 |
Figure S23. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D5V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S24. Gene #6: '3q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
3Q GAIN MUTATED | 9 | 37 | 8 |
3Q GAIN WILD-TYPE | 264 | 97 | 77 |
Figure S24. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D6V1.png)
P value = 0.00754 (Fisher's exact test), Q value = 0.028
Table S25. Gene #6: '3q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
3Q GAIN MUTATED | 9 | 27 | 18 |
3Q GAIN WILD-TYPE | 151 | 138 | 149 |
Figure S25. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D6V2.png)
P value = 0.027 (Fisher's exact test), Q value = 0.074
Table S26. Gene #6: '3q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
3Q GAIN MUTATED | 9 | 4 | 25 |
3Q GAIN WILD-TYPE | 114 | 64 | 131 |
Figure S26. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D6V3.png)
P value = 0.0258 (Fisher's exact test), Q value = 0.072
Table S27. Gene #6: '3q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
3Q GAIN MUTATED | 3 | 16 | 7 | 12 |
3Q GAIN WILD-TYPE | 71 | 97 | 85 | 56 |
Figure S27. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D6V4.png)
P value = 0.00112 (Fisher's exact test), Q value = 0.0065
Table S28. Gene #6: '3q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
3Q GAIN MUTATED | 6 | 28 | 20 |
3Q GAIN WILD-TYPE | 140 | 143 | 154 |
Figure S28. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D6V5.png)
P value = 0.0013 (Fisher's exact test), Q value = 0.0073
Table S29. Gene #6: '3q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
3Q GAIN MUTATED | 8 | 33 | 13 |
3Q GAIN WILD-TYPE | 163 | 172 | 102 |
Figure S29. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D6V6.png)
P value = 0.00529 (Fisher's exact test), Q value = 0.021
Table S30. Gene #6: '3q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
3Q GAIN MUTATED | 12 | 10 | 31 |
3Q GAIN WILD-TYPE | 146 | 137 | 152 |
Figure S30. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D6V7.png)
P value = 0.00391 (Fisher's exact test), Q value = 0.017
Table S31. Gene #6: '3q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
3Q GAIN MUTATED | 10 | 10 | 4 | 26 | 3 |
3Q GAIN WILD-TYPE | 137 | 88 | 55 | 102 | 53 |
Figure S31. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D6V8.png)
P value = 0.0148 (Fisher's exact test), Q value = 0.047
Table S32. Gene #6: '3q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
3Q GAIN MUTATED | 1 | 17 | 6 | 7 |
3Q GAIN WILD-TYPE | 61 | 89 | 54 | 83 |
Figure S32. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D6V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00026
Table S33. Gene #6: '3q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
3Q GAIN MUTATED | 2 | 3 | 14 | 9 | 1 | 2 |
3Q GAIN WILD-TYPE | 68 | 38 | 26 | 73 | 24 | 58 |
Figure S33. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D6V10.png)
P value = 0.0277 (Fisher's exact test), Q value = 0.075
Table S34. Gene #7: '4p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
4P GAIN MUTATED | 2 | 6 | 1 |
4P GAIN WILD-TYPE | 271 | 128 | 84 |
Figure S34. Get High-res Image Gene #7: '4p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D7V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S35. Gene #9: '5p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
5P GAIN MUTATED | 2 | 21 | 0 |
5P GAIN WILD-TYPE | 271 | 113 | 85 |
Figure S35. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D9V1.png)
P value = 0.0275 (Fisher's exact test), Q value = 0.075
Table S36. Gene #9: '5p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
5P GAIN MUTATED | 2 | 2 | 13 |
5P GAIN WILD-TYPE | 121 | 66 | 143 |
Figure S36. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D9V3.png)
P value = 0.00882 (Fisher's exact test), Q value = 0.032
Table S37. Gene #9: '5p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
5P GAIN MUTATED | 1 | 10 | 12 |
5P GAIN WILD-TYPE | 145 | 161 | 162 |
Figure S37. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D9V5.png)
P value = 0.00122 (Fisher's exact test), Q value = 0.0069
Table S38. Gene #9: '5p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
5P GAIN MUTATED | 4 | 2 | 17 |
5P GAIN WILD-TYPE | 154 | 145 | 166 |
Figure S38. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D9V7.png)
P value = 0.00152 (Fisher's exact test), Q value = 0.0082
Table S39. Gene #9: '5p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
5P GAIN MUTATED | 4 | 3 | 0 | 15 | 1 |
5P GAIN WILD-TYPE | 143 | 95 | 59 | 113 | 55 |
Figure S39. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D9V8.png)
P value = 0.00191 (Fisher's exact test), Q value = 0.0098
Table S40. Gene #9: '5p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
5P GAIN MUTATED | 1 | 12 | 0 | 2 |
5P GAIN WILD-TYPE | 61 | 94 | 60 | 88 |
Figure S40. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D9V9.png)
P value = 0.00403 (Fisher's exact test), Q value = 0.017
Table S41. Gene #9: '5p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
5P GAIN MUTATED | 2 | 0 | 5 | 8 | 0 | 0 |
5P GAIN WILD-TYPE | 68 | 41 | 35 | 74 | 25 | 60 |
Figure S41. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D9V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00026
Table S42. Gene #10: '5q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
5Q GAIN MUTATED | 1 | 11 | 0 |
5Q GAIN WILD-TYPE | 272 | 123 | 85 |
Figure S42. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D10V1.png)
P value = 0.0349 (Fisher's exact test), Q value = 0.087
Table S43. Gene #10: '5q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
5Q GAIN MUTATED | 0 | 5 | 7 |
5Q GAIN WILD-TYPE | 146 | 166 | 167 |
Figure S43. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D10V5.png)
P value = 0.00136 (Fisher's exact test), Q value = 0.0075
Table S44. Gene #11: '6p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
6P GAIN MUTATED | 2 | 8 | 0 |
6P GAIN WILD-TYPE | 271 | 126 | 85 |
Figure S44. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D11V1.png)
P value = 0.0177 (Fisher's exact test), Q value = 0.054
Table S45. Gene #11: '6p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
6P GAIN MUTATED | 0 | 7 | 0 | 1 |
6P GAIN WILD-TYPE | 62 | 99 | 60 | 89 |
Figure S45. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D11V9.png)
P value = 0.0202 (Fisher's exact test), Q value = 0.061
Table S46. Gene #12: '6q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
6Q GAIN MUTATED | 1 | 5 | 0 |
6Q GAIN WILD-TYPE | 272 | 129 | 85 |
Figure S46. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D12V1.png)
P value = 0.0392 (Fisher's exact test), Q value = 0.093
Table S47. Gene #12: '6q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
6Q GAIN MUTATED | 0 | 1 | 0 | 5 | 0 |
6Q GAIN WILD-TYPE | 147 | 97 | 59 | 123 | 56 |
Figure S47. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D12V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S48. Gene #13: '7p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
7P GAIN MUTATED | 13 | 67 | 22 |
7P GAIN WILD-TYPE | 260 | 67 | 63 |
Figure S48. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D13V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S49. Gene #13: '7p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
7P GAIN MUTATED | 14 | 60 | 28 |
7P GAIN WILD-TYPE | 146 | 105 | 139 |
Figure S49. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D13V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S50. Gene #13: '7p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
7P GAIN MUTATED | 10 | 64 | 28 |
7P GAIN WILD-TYPE | 136 | 107 | 146 |
Figure S50. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D13V5.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00036
Table S51. Gene #13: '7p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
7P GAIN MUTATED | 21 | 64 | 17 |
7P GAIN WILD-TYPE | 150 | 141 | 98 |
Figure S51. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D13V6.png)
P value = 0.0184 (Fisher's exact test), Q value = 0.056
Table S52. Gene #13: '7p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
7P GAIN MUTATED | 22 | 31 | 48 |
7P GAIN WILD-TYPE | 136 | 116 | 135 |
Figure S52. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D13V7.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00055
Table S53. Gene #13: '7p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
7P GAIN MUTATED | 16 | 28 | 15 | 38 | 4 |
7P GAIN WILD-TYPE | 131 | 70 | 44 | 90 | 52 |
Figure S53. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D13V8.png)
P value = 0.00023 (Fisher's exact test), Q value = 0.0019
Table S54. Gene #13: '7p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
7P GAIN MUTATED | 4 | 36 | 11 | 18 |
7P GAIN WILD-TYPE | 58 | 70 | 49 | 72 |
Figure S54. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D13V9.png)
P value = 0.00168 (Fisher's exact test), Q value = 0.009
Table S55. Gene #13: '7p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
7P GAIN MUTATED | 6 | 12 | 13 | 25 | 2 | 11 |
7P GAIN WILD-TYPE | 64 | 29 | 27 | 57 | 23 | 49 |
Figure S55. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D13V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S56. Gene #14: '7q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
7Q GAIN MUTATED | 13 | 61 | 21 |
7Q GAIN WILD-TYPE | 260 | 73 | 64 |
Figure S56. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D14V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S57. Gene #14: '7q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
7Q GAIN MUTATED | 11 | 58 | 26 |
7Q GAIN WILD-TYPE | 149 | 107 | 141 |
Figure S57. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D14V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S58. Gene #14: '7q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
7Q GAIN MUTATED | 10 | 59 | 26 |
7Q GAIN WILD-TYPE | 136 | 112 | 148 |
Figure S58. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D14V5.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00046
Table S59. Gene #14: '7q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
7Q GAIN MUTATED | 20 | 59 | 16 |
7Q GAIN WILD-TYPE | 151 | 146 | 99 |
Figure S59. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D14V6.png)
P value = 0.0242 (Fisher's exact test), Q value = 0.069
Table S60. Gene #14: '7q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
7Q GAIN MUTATED | 20 | 30 | 44 |
7Q GAIN WILD-TYPE | 138 | 117 | 139 |
Figure S60. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D14V7.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00086
Table S61. Gene #14: '7q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
7Q GAIN MUTATED | 14 | 27 | 14 | 35 | 4 |
7Q GAIN WILD-TYPE | 133 | 71 | 45 | 93 | 52 |
Figure S61. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D14V8.png)
P value = 4e-04 (Fisher's exact test), Q value = 0.0029
Table S62. Gene #14: '7q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
7Q GAIN MUTATED | 4 | 35 | 11 | 16 |
7Q GAIN WILD-TYPE | 58 | 71 | 49 | 74 |
Figure S62. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D14V9.png)
P value = 0.00549 (Fisher's exact test), Q value = 0.022
Table S63. Gene #14: '7q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
7Q GAIN MUTATED | 6 | 11 | 12 | 24 | 2 | 11 |
7Q GAIN WILD-TYPE | 64 | 30 | 28 | 58 | 23 | 49 |
Figure S63. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D14V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S64. Gene #15: '8p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
8P GAIN MUTATED | 13 | 49 | 9 |
8P GAIN WILD-TYPE | 260 | 85 | 76 |
Figure S64. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D15V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S65. Gene #15: '8p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
8P GAIN MUTATED | 10 | 47 | 14 |
8P GAIN WILD-TYPE | 150 | 118 | 153 |
Figure S65. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D15V2.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00078
Table S66. Gene #15: '8p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
8P GAIN MUTATED | 10 | 4 | 38 |
8P GAIN WILD-TYPE | 113 | 64 | 118 |
Figure S66. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D15V3.png)
P value = 0.00048 (Fisher's exact test), Q value = 0.0033
Table S67. Gene #15: '8p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
8P GAIN MUTATED | 7 | 15 | 8 | 22 |
8P GAIN WILD-TYPE | 67 | 98 | 84 | 46 |
Figure S67. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D15V4.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00062
Table S68. Gene #15: '8p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
8P GAIN MUTATED | 13 | 42 | 16 |
8P GAIN WILD-TYPE | 133 | 129 | 158 |
Figure S68. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D15V5.png)
P value = 0.00048 (Fisher's exact test), Q value = 0.0033
Table S69. Gene #15: '8p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
8P GAIN MUTATED | 15 | 45 | 11 |
8P GAIN WILD-TYPE | 156 | 160 | 104 |
Figure S69. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D15V6.png)
P value = 0.00591 (Fisher's exact test), Q value = 0.023
Table S70. Gene #15: '8p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
8P GAIN MUTATED | 11 | 15 | 10 | 29 | 5 |
8P GAIN WILD-TYPE | 136 | 83 | 49 | 99 | 51 |
Figure S70. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D15V8.png)
P value = 0.00207 (Fisher's exact test), Q value = 0.01
Table S71. Gene #15: '8p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
8P GAIN MUTATED | 3 | 27 | 7 | 11 |
8P GAIN WILD-TYPE | 59 | 79 | 53 | 79 |
Figure S71. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D15V9.png)
P value = 0.00187 (Fisher's exact test), Q value = 0.0097
Table S72. Gene #15: '8p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
8P GAIN MUTATED | 4 | 6 | 6 | 24 | 2 | 6 |
8P GAIN WILD-TYPE | 66 | 35 | 34 | 58 | 23 | 54 |
Figure S72. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D15V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S73. Gene #16: '8q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
8Q GAIN MUTATED | 36 | 77 | 11 |
8Q GAIN WILD-TYPE | 237 | 57 | 74 |
Figure S73. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D16V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S74. Gene #16: '8q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
8Q GAIN MUTATED | 21 | 68 | 35 |
8Q GAIN WILD-TYPE | 139 | 97 | 132 |
Figure S74. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D16V2.png)
P value = 0.00013 (Fisher's exact test), Q value = 0.0012
Table S75. Gene #16: '8q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
8Q GAIN MUTATED | 24 | 8 | 56 |
8Q GAIN WILD-TYPE | 99 | 60 | 100 |
Figure S75. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D16V3.png)
P value = 0.00038 (Fisher's exact test), Q value = 0.0028
Table S76. Gene #16: '8q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
8Q GAIN MUTATED | 12 | 25 | 20 | 31 |
8Q GAIN WILD-TYPE | 62 | 88 | 72 | 37 |
Figure S76. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D16V4.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00055
Table S77. Gene #16: '8q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
8Q GAIN MUTATED | 21 | 63 | 40 |
8Q GAIN WILD-TYPE | 125 | 108 | 134 |
Figure S77. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D16V5.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00036
Table S78. Gene #16: '8q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
8Q GAIN MUTATED | 26 | 73 | 25 |
8Q GAIN WILD-TYPE | 145 | 132 | 90 |
Figure S78. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D16V6.png)
P value = 0.00046 (Fisher's exact test), Q value = 0.0032
Table S79. Gene #16: '8q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
8Q GAIN MUTATED | 29 | 29 | 64 |
8Q GAIN WILD-TYPE | 129 | 118 | 119 |
Figure S79. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D16V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S80. Gene #16: '8q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
8Q GAIN MUTATED | 17 | 24 | 18 | 54 | 9 |
8Q GAIN WILD-TYPE | 130 | 74 | 41 | 74 | 47 |
Figure S80. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D16V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S81. Gene #16: '8q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
8Q GAIN MUTATED | 6 | 46 | 11 | 18 |
8Q GAIN WILD-TYPE | 56 | 60 | 49 | 72 |
Figure S81. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D16V9.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00036
Table S82. Gene #16: '8q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
8Q GAIN MUTATED | 8 | 9 | 13 | 37 | 3 | 11 |
8Q GAIN WILD-TYPE | 62 | 32 | 27 | 45 | 22 | 49 |
Figure S82. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D16V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S83. Gene #17: '9p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
9P GAIN MUTATED | 4 | 30 | 0 |
9P GAIN WILD-TYPE | 269 | 104 | 85 |
Figure S83. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D17V1.png)
P value = 0.0161 (Fisher's exact test), Q value = 0.05
Table S84. Gene #17: '9p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
9P GAIN MUTATED | 2 | 13 | 1 | 3 |
9P GAIN WILD-TYPE | 60 | 93 | 59 | 87 |
Figure S84. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D17V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S85. Gene #18: '9q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
9Q GAIN MUTATED | 8 | 42 | 0 |
9Q GAIN WILD-TYPE | 265 | 92 | 85 |
Figure S85. Get High-res Image Gene #18: '9q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D18V1.png)
P value = 0.0154 (Fisher's exact test), Q value = 0.048
Table S86. Gene #18: '9q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
9Q GAIN MUTATED | 7 | 18 | 25 |
9Q GAIN WILD-TYPE | 139 | 153 | 149 |
Figure S86. Get High-res Image Gene #18: '9q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D18V5.png)
P value = 0.0109 (Fisher's exact test), Q value = 0.038
Table S87. Gene #18: '9q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
9Q GAIN MUTATED | 10 | 7 | 5 | 24 | 3 |
9Q GAIN WILD-TYPE | 137 | 91 | 54 | 104 | 53 |
Figure S87. Get High-res Image Gene #18: '9q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D18V8.png)
P value = 0.00702 (Fisher's exact test), Q value = 0.026
Table S88. Gene #18: '9q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
9Q GAIN MUTATED | 2 | 18 | 3 | 5 |
9Q GAIN WILD-TYPE | 60 | 88 | 57 | 85 |
Figure S88. Get High-res Image Gene #18: '9q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D18V9.png)
P value = 0.0139 (Fisher's exact test), Q value = 0.046
Table S89. Gene #18: '9q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
9Q GAIN MUTATED | 3 | 1 | 8 | 12 | 1 | 3 |
9Q GAIN WILD-TYPE | 67 | 40 | 32 | 70 | 24 | 57 |
Figure S89. Get High-res Image Gene #18: '9q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D18V10.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00062
Table S90. Gene #19: '10p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
10P GAIN MUTATED | 3 | 12 | 0 |
10P GAIN WILD-TYPE | 270 | 122 | 85 |
Figure S90. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D19V1.png)
P value = 0.0344 (Fisher's exact test), Q value = 0.087
Table S91. Gene #19: '10p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
10P GAIN MUTATED | 1 | 9 | 5 |
10P GAIN WILD-TYPE | 159 | 156 | 162 |
Figure S91. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D19V2.png)
P value = 0.0337 (Fisher's exact test), Q value = 0.086
Table S92. Gene #19: '10p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
10P GAIN MUTATED | 1 | 10 | 4 |
10P GAIN WILD-TYPE | 170 | 195 | 111 |
Figure S92. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D19V6.png)
P value = 0.0135 (Fisher's exact test), Q value = 0.044
Table S93. Gene #19: '10p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
10P GAIN MUTATED | 1 | 1 | 1 | 8 | 4 |
10P GAIN WILD-TYPE | 146 | 97 | 58 | 120 | 52 |
Figure S93. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D19V8.png)
P value = 7e-04 (Fisher's exact test), Q value = 0.0045
Table S94. Gene #19: '10p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
10P GAIN MUTATED | 1 | 0 | 8 | 3 | 0 | 2 |
10P GAIN WILD-TYPE | 69 | 41 | 32 | 79 | 25 | 58 |
Figure S94. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D19V10.png)
P value = 0.00025 (Fisher's exact test), Q value = 0.002
Table S95. Gene #20: '10q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
10Q GAIN MUTATED | 3 | 11 | 0 |
10Q GAIN WILD-TYPE | 270 | 123 | 85 |
Figure S95. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D20V1.png)
P value = 0.0323 (Fisher's exact test), Q value = 0.083
Table S96. Gene #20: '10q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
10Q GAIN MUTATED | 1 | 10 | 3 |
10Q GAIN WILD-TYPE | 170 | 195 | 112 |
Figure S96. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D20V6.png)
P value = 0.00197 (Fisher's exact test), Q value = 0.01
Table S97. Gene #20: '10q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
10Q GAIN MUTATED | 0 | 0 | 6 | 2 | 0 | 2 |
10Q GAIN WILD-TYPE | 70 | 41 | 34 | 80 | 25 | 58 |
Figure S97. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D20V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S98. Gene #21: '11p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
11P GAIN MUTATED | 3 | 21 | 2 |
11P GAIN WILD-TYPE | 270 | 113 | 83 |
Figure S98. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D21V1.png)
P value = 0.0146 (Fisher's exact test), Q value = 0.047
Table S99. Gene #21: '11p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
11P GAIN MUTATED | 4 | 18 | 4 |
11P GAIN WILD-TYPE | 167 | 187 | 111 |
Figure S99. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D21V6.png)
P value = 0.0356 (Fisher's exact test), Q value = 0.089
Table S100. Gene #21: '11p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
11P GAIN MUTATED | 1 | 11 | 2 | 2 |
11P GAIN WILD-TYPE | 61 | 95 | 58 | 88 |
Figure S100. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D21V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S101. Gene #22: '11q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
11Q GAIN MUTATED | 3 | 24 | 2 |
11Q GAIN WILD-TYPE | 270 | 110 | 83 |
Figure S101. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D22V1.png)
P value = 0.0306 (Fisher's exact test), Q value = 0.081
Table S102. Gene #22: '11q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
11Q GAIN MUTATED | 3 | 15 | 11 |
11Q GAIN WILD-TYPE | 143 | 156 | 163 |
Figure S102. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D22V5.png)
P value = 0.0383 (Fisher's exact test), Q value = 0.092
Table S103. Gene #22: '11q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
11Q GAIN MUTATED | 6 | 19 | 4 |
11Q GAIN WILD-TYPE | 165 | 186 | 111 |
Figure S103. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D22V6.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00026
Table S104. Gene #23: '12p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
12P GAIN MUTATED | 2 | 12 | 0 |
12P GAIN WILD-TYPE | 271 | 122 | 85 |
Figure S104. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D23V1.png)
P value = 0.00106 (Fisher's exact test), Q value = 0.0064
Table S105. Gene #23: '12p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
12P GAIN MUTATED | 1 | 1 | 1 | 11 | 0 |
12P GAIN WILD-TYPE | 146 | 97 | 58 | 117 | 56 |
Figure S105. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D23V8.png)
P value = 0.0238 (Fisher's exact test), Q value = 0.068
Table S106. Gene #23: '12p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
12P GAIN MUTATED | 0 | 8 | 1 | 1 |
12P GAIN WILD-TYPE | 62 | 98 | 59 | 89 |
Figure S106. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D23V9.png)
P value = 0.00048 (Fisher's exact test), Q value = 0.0033
Table S107. Gene #24: '12q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
12Q GAIN MUTATED | 5 | 12 | 0 |
12Q GAIN WILD-TYPE | 268 | 122 | 85 |
Figure S107. Get High-res Image Gene #24: '12q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D24V1.png)
P value = 0.0198 (Fisher's exact test), Q value = 0.06
Table S108. Gene #24: '12q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
12Q GAIN MUTATED | 3 | 1 | 3 | 10 | 0 |
12Q GAIN WILD-TYPE | 144 | 97 | 56 | 118 | 56 |
Figure S108. Get High-res Image Gene #24: '12q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D24V8.png)
P value = 0.0157 (Fisher's exact test), Q value = 0.049
Table S109. Gene #24: '12q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
12Q GAIN MUTATED | 1 | 10 | 1 | 1 |
12Q GAIN WILD-TYPE | 61 | 96 | 59 | 89 |
Figure S109. Get High-res Image Gene #24: '12q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D24V9.png)
P value = 0.0144 (Fisher's exact test), Q value = 0.047
Table S110. Gene #25: '13q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
13Q GAIN MUTATED | 2 | 6 | 0 |
13Q GAIN WILD-TYPE | 271 | 128 | 85 |
Figure S110. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D25V1.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00062
Table S111. Gene #26: '14q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
14Q GAIN MUTATED | 0 | 9 | 1 |
14Q GAIN WILD-TYPE | 273 | 125 | 84 |
Figure S111. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D26V1.png)
P value = 0.0207 (Fisher's exact test), Q value = 0.061
Table S112. Gene #27: '15q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
15Q GAIN MUTATED | 1 | 5 | 0 |
15Q GAIN WILD-TYPE | 272 | 129 | 85 |
Figure S112. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D27V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S113. Gene #28: '16p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
16P GAIN MUTATED | 8 | 23 | 0 |
16P GAIN WILD-TYPE | 265 | 111 | 85 |
Figure S113. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D28V1.png)
P value = 0.00398 (Fisher's exact test), Q value = 0.017
Table S114. Gene #28: '16p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
16P GAIN MUTATED | 2 | 4 | 6 | 14 | 4 |
16P GAIN WILD-TYPE | 145 | 94 | 53 | 114 | 52 |
Figure S114. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D28V8.png)
P value = 0.0262 (Fisher's exact test), Q value = 0.073
Table S115. Gene #28: '16p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
16P GAIN MUTATED | 0 | 9 | 2 | 9 |
16P GAIN WILD-TYPE | 62 | 97 | 58 | 81 |
Figure S115. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D28V9.png)
P value = 0.0127 (Fisher's exact test), Q value = 0.043
Table S116. Gene #28: '16p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
16P GAIN MUTATED | 1 | 1 | 7 | 5 | 0 | 6 |
16P GAIN WILD-TYPE | 69 | 40 | 33 | 77 | 25 | 54 |
Figure S116. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D28V10.png)
P value = 0.0129 (Fisher's exact test), Q value = 0.043
Table S117. Gene #29: '16q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
16Q GAIN MUTATED | 0 | 0 | 1 | 6 | 1 |
16Q GAIN WILD-TYPE | 147 | 98 | 58 | 122 | 55 |
Figure S117. Get High-res Image Gene #29: '16q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D29V8.png)
P value = 0.0147 (Fisher's exact test), Q value = 0.047
Table S118. Gene #30: '17p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
17P GAIN MUTATED | 2 | 6 | 0 |
17P GAIN WILD-TYPE | 271 | 128 | 85 |
Figure S118. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D30V1.png)
P value = 0.0208 (Fisher's exact test), Q value = 0.061
Table S119. Gene #30: '17p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
17P GAIN MUTATED | 6 | 0 | 2 |
17P GAIN WILD-TYPE | 152 | 147 | 181 |
Figure S119. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D30V7.png)
P value = 0.0165 (Fisher's exact test), Q value = 0.051
Table S120. Gene #30: '17p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
17P GAIN MUTATED | 1 | 0 | 4 | 3 | 0 |
17P GAIN WILD-TYPE | 146 | 98 | 55 | 125 | 56 |
Figure S120. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D30V8.png)
P value = 0.00361 (Fisher's exact test), Q value = 0.016
Table S121. Gene #30: '17p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
17P GAIN MUTATED | 0 | 0 | 4 | 1 | 1 | 0 |
17P GAIN WILD-TYPE | 70 | 41 | 36 | 81 | 24 | 60 |
Figure S121. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D30V10.png)
P value = 0.00047 (Fisher's exact test), Q value = 0.0033
Table S122. Gene #31: '17q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
17Q GAIN MUTATED | 2 | 9 | 0 |
17Q GAIN WILD-TYPE | 271 | 125 | 85 |
Figure S122. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D31V1.png)
P value = 0.0172 (Fisher's exact test), Q value = 0.053
Table S123. Gene #31: '17q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
17Q GAIN MUTATED | 0 | 3 | 8 |
17Q GAIN WILD-TYPE | 146 | 168 | 166 |
Figure S123. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D31V5.png)
P value = 0.00068 (Fisher's exact test), Q value = 0.0044
Table S124. Gene #31: '17q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
17Q GAIN MUTATED | 1 | 0 | 6 | 1 | 1 | 0 |
17Q GAIN WILD-TYPE | 69 | 41 | 34 | 81 | 24 | 60 |
Figure S124. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D31V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00026
Table S125. Gene #32: '18p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
18P GAIN MUTATED | 3 | 15 | 0 |
18P GAIN WILD-TYPE | 270 | 119 | 85 |
Figure S125. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D32V1.png)
P value = 0.0049 (Fisher's exact test), Q value = 0.02
Table S126. Gene #33: '18q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
18Q GAIN MUTATED | 2 | 7 | 0 |
18Q GAIN WILD-TYPE | 271 | 127 | 85 |
Figure S126. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D33V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S127. Gene #34: '19p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
19P GAIN MUTATED | 0 | 12 | 0 |
19P GAIN WILD-TYPE | 273 | 122 | 85 |
Figure S127. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D34V1.png)
P value = 0.015 (Fisher's exact test), Q value = 0.048
Table S128. Gene #34: '19p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
19P GAIN MUTATED | 0 | 1 | 8 |
19P GAIN WILD-TYPE | 123 | 67 | 148 |
Figure S128. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D34V3.png)
P value = 0.0357 (Fisher's exact test), Q value = 0.089
Table S129. Gene #34: '19p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
19P GAIN MUTATED | 0 | 5 | 7 |
19P GAIN WILD-TYPE | 146 | 166 | 167 |
Figure S129. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D34V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S130. Gene #35: '19q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
19Q GAIN MUTATED | 0 | 12 | 0 |
19Q GAIN WILD-TYPE | 273 | 122 | 85 |
Figure S130. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D35V1.png)
P value = 0.0383 (Fisher's exact test), Q value = 0.092
Table S131. Gene #35: '19q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
19Q GAIN MUTATED | 0 | 6 | 6 |
19Q GAIN WILD-TYPE | 146 | 165 | 168 |
Figure S131. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D35V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S132. Gene #36: '20p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
20P GAIN MUTATED | 3 | 22 | 1 |
20P GAIN WILD-TYPE | 270 | 112 | 84 |
Figure S132. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D36V1.png)
P value = 0.0222 (Fisher's exact test), Q value = 0.064
Table S133. Gene #36: '20p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
20P GAIN MUTATED | 3 | 14 | 9 |
20P GAIN WILD-TYPE | 157 | 151 | 158 |
Figure S133. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D36V2.png)
P value = 0.0233 (Fisher's exact test), Q value = 0.066
Table S134. Gene #36: '20p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
20P GAIN MUTATED | 2 | 11 | 13 |
20P GAIN WILD-TYPE | 144 | 160 | 161 |
Figure S134. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D36V5.png)
P value = 0.0367 (Fisher's exact test), Q value = 0.09
Table S135. Gene #36: '20p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
20P GAIN MUTATED | 4 | 17 | 5 |
20P GAIN WILD-TYPE | 167 | 188 | 110 |
Figure S135. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D36V6.png)
P value = 0.00203 (Fisher's exact test), Q value = 0.01
Table S136. Gene #36: '20p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
20P GAIN MUTATED | 4 | 3 | 18 |
20P GAIN WILD-TYPE | 154 | 144 | 165 |
Figure S136. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D36V7.png)
P value = 0.00401 (Fisher's exact test), Q value = 0.017
Table S137. Gene #36: '20p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
20P GAIN MUTATED | 3 | 5 | 1 | 15 | 1 |
20P GAIN WILD-TYPE | 144 | 93 | 58 | 113 | 55 |
Figure S137. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D36V8.png)
P value = 0.0313 (Fisher's exact test), Q value = 0.082
Table S138. Gene #36: '20p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
20P GAIN MUTATED | 0 | 10 | 2 | 3 |
20P GAIN WILD-TYPE | 62 | 96 | 58 | 87 |
Figure S138. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D36V9.png)
P value = 0.00407 (Fisher's exact test), Q value = 0.017
Table S139. Gene #36: '20p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
20P GAIN MUTATED | 1 | 0 | 7 | 5 | 0 | 2 |
20P GAIN WILD-TYPE | 69 | 41 | 33 | 77 | 25 | 58 |
Figure S139. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D36V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S140. Gene #37: '20q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
20Q GAIN MUTATED | 3 | 24 | 1 |
20Q GAIN WILD-TYPE | 270 | 110 | 84 |
Figure S140. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D37V1.png)
P value = 0.0196 (Fisher's exact test), Q value = 0.059
Table S141. Gene #37: '20q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
20Q GAIN MUTATED | 4 | 16 | 8 |
20Q GAIN WILD-TYPE | 156 | 149 | 159 |
Figure S141. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D37V2.png)
P value = 0.034 (Fisher's exact test), Q value = 0.086
Table S142. Gene #37: '20q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
20Q GAIN MUTATED | 3 | 9 | 2 | 9 |
20Q GAIN WILD-TYPE | 71 | 104 | 90 | 59 |
Figure S142. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D37V4.png)
P value = 0.0114 (Fisher's exact test), Q value = 0.039
Table S143. Gene #37: '20q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
20Q GAIN MUTATED | 4 | 6 | 18 |
20Q GAIN WILD-TYPE | 154 | 141 | 165 |
Figure S143. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D37V7.png)
P value = 0.0079 (Fisher's exact test), Q value = 0.029
Table S144. Gene #37: '20q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
20Q GAIN MUTATED | 4 | 7 | 1 | 15 | 1 |
20Q GAIN WILD-TYPE | 143 | 91 | 58 | 113 | 55 |
Figure S144. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D37V8.png)
P value = 0.00929 (Fisher's exact test), Q value = 0.033
Table S145. Gene #37: '20q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
20Q GAIN MUTATED | 1 | 1 | 8 | 4 | 1 | 3 |
20Q GAIN WILD-TYPE | 69 | 40 | 32 | 78 | 24 | 57 |
Figure S145. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D37V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S146. Gene #38: '21q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
21Q GAIN MUTATED | 0 | 21 | 0 |
21Q GAIN WILD-TYPE | 273 | 113 | 85 |
Figure S146. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D38V1.png)
P value = 0.0388 (Fisher's exact test), Q value = 0.092
Table S147. Gene #38: '21q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
21Q GAIN MUTATED | 2 | 11 | 8 |
21Q GAIN WILD-TYPE | 158 | 154 | 159 |
Figure S147. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D38V2.png)
P value = 0.00179 (Fisher's exact test), Q value = 0.0094
Table S148. Gene #38: '21q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
21Q GAIN MUTATED | 0 | 11 | 10 |
21Q GAIN WILD-TYPE | 146 | 160 | 164 |
Figure S148. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D38V5.png)
P value = 0.0268 (Fisher's exact test), Q value = 0.074
Table S149. Gene #38: '21q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
21Q GAIN MUTATED | 2 | 13 | 6 |
21Q GAIN WILD-TYPE | 169 | 192 | 109 |
Figure S149. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D38V6.png)
P value = 0.0145 (Fisher's exact test), Q value = 0.047
Table S150. Gene #38: '21q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
21Q GAIN MUTATED | 2 | 5 | 14 |
21Q GAIN WILD-TYPE | 156 | 142 | 169 |
Figure S150. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D38V7.png)
P value = 0.00321 (Fisher's exact test), Q value = 0.015
Table S151. Gene #38: '21q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
21Q GAIN MUTATED | 1 | 3 | 2 | 13 | 2 |
21Q GAIN WILD-TYPE | 146 | 95 | 57 | 115 | 54 |
Figure S151. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D38V8.png)
P value = 0.0121 (Fisher's exact test), Q value = 0.041
Table S152. Gene #38: '21q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
21Q GAIN MUTATED | 0 | 11 | 1 | 5 |
21Q GAIN WILD-TYPE | 62 | 95 | 59 | 85 |
Figure S152. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D38V9.png)
P value = 0.0292 (Fisher's exact test), Q value = 0.078
Table S153. Gene #38: '21q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
21Q GAIN MUTATED | 1 | 1 | 6 | 7 | 0 | 2 |
21Q GAIN WILD-TYPE | 69 | 40 | 34 | 75 | 25 | 58 |
Figure S153. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D38V10.png)
P value = 0.00107 (Fisher's exact test), Q value = 0.0064
Table S154. Gene #40: 'xp gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
XP GAIN MUTATED | 0 | 6 | 1 |
XP GAIN WILD-TYPE | 273 | 128 | 84 |
Figure S154. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D40V1.png)
P value = 0.0444 (Fisher's exact test), Q value = 0.1
Table S155. Gene #40: 'xp gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
XP GAIN MUTATED | 0 | 2 | 0 | 5 | 0 |
XP GAIN WILD-TYPE | 147 | 96 | 59 | 123 | 56 |
Figure S155. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D40V8.png)
P value = 0.00638 (Fisher's exact test), Q value = 0.024
Table S156. Gene #40: 'xp gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
XP GAIN MUTATED | 0 | 6 | 0 | 0 |
XP GAIN WILD-TYPE | 62 | 100 | 60 | 90 |
Figure S156. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D40V9.png)
P value = 0.00104 (Fisher's exact test), Q value = 0.0063
Table S157. Gene #41: 'xq gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
XQ GAIN MUTATED | 0 | 6 | 1 |
XQ GAIN WILD-TYPE | 273 | 128 | 84 |
Figure S157. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D41V1.png)
P value = 0.0461 (Fisher's exact test), Q value = 0.11
Table S158. Gene #41: 'xq gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
XQ GAIN MUTATED | 0 | 2 | 0 | 5 | 0 |
XQ GAIN WILD-TYPE | 147 | 96 | 59 | 123 | 56 |
Figure S158. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D41V8.png)
P value = 0.00638 (Fisher's exact test), Q value = 0.024
Table S159. Gene #41: 'xq gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
XQ GAIN MUTATED | 0 | 6 | 0 | 0 |
XQ GAIN WILD-TYPE | 62 | 100 | 60 | 90 |
Figure S159. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D41V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S160. Gene #42: '1p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
1P LOSS MUTATED | 1 | 20 | 1 |
1P LOSS WILD-TYPE | 272 | 114 | 84 |
Figure S160. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D42V1.png)
P value = 0.00057 (Fisher's exact test), Q value = 0.0038
Table S161. Gene #42: '1p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
1P LOSS MUTATED | 0 | 11 | 11 |
1P LOSS WILD-TYPE | 160 | 154 | 156 |
Figure S161. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D42V2.png)
P value = 0.00117 (Fisher's exact test), Q value = 0.0067
Table S162. Gene #42: '1p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
1P LOSS MUTATED | 0 | 11 | 11 |
1P LOSS WILD-TYPE | 146 | 160 | 163 |
Figure S162. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D42V5.png)
P value = 0.00026 (Fisher's exact test), Q value = 0.002
Table S163. Gene #42: '1p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
1P LOSS MUTATED | 0 | 13 | 9 |
1P LOSS WILD-TYPE | 171 | 192 | 106 |
Figure S163. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D42V6.png)
P value = 0.0252 (Fisher's exact test), Q value = 0.071
Table S164. Gene #42: '1p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
1P LOSS MUTATED | 2 | 6 | 13 |
1P LOSS WILD-TYPE | 156 | 141 | 170 |
Figure S164. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D42V7.png)
P value = 0.00361 (Fisher's exact test), Q value = 0.016
Table S165. Gene #42: '1p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
1P LOSS MUTATED | 1 | 3 | 4 | 12 | 1 |
1P LOSS WILD-TYPE | 146 | 95 | 55 | 116 | 55 |
Figure S165. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D42V8.png)
P value = 0.0204 (Fisher's exact test), Q value = 0.061
Table S166. Gene #42: '1p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
1P LOSS MUTATED | 0 | 11 | 4 | 3 |
1P LOSS WILD-TYPE | 62 | 95 | 56 | 87 |
Figure S166. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D42V9.png)
P value = 0.013 (Fisher's exact test), Q value = 0.043
Table S167. Gene #42: '1p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
1P LOSS MUTATED | 0 | 1 | 5 | 8 | 0 | 4 |
1P LOSS WILD-TYPE | 70 | 40 | 35 | 74 | 25 | 56 |
Figure S167. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D42V10.png)
P value = 0.0204 (Fisher's exact test), Q value = 0.061
Table S168. Gene #43: '1q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
1Q LOSS MUTATED | 1 | 5 | 0 |
1Q LOSS WILD-TYPE | 272 | 129 | 85 |
Figure S168. Get High-res Image Gene #43: '1q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D43V1.png)
P value = 0.0432 (Fisher's exact test), Q value = 0.1
Table S169. Gene #43: '1q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
1Q LOSS MUTATED | 0 | 5 | 1 |
1Q LOSS WILD-TYPE | 146 | 166 | 173 |
Figure S169. Get High-res Image Gene #43: '1q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D43V5.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00086
Table S170. Gene #44: '2p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
2P LOSS MUTATED | 2 | 12 | 2 |
2P LOSS WILD-TYPE | 271 | 122 | 83 |
Figure S170. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D44V1.png)
P value = 0.00517 (Fisher's exact test), Q value = 0.021
Table S171. Gene #44: '2p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
2P LOSS MUTATED | 0 | 9 | 7 |
2P LOSS WILD-TYPE | 160 | 156 | 160 |
Figure S171. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D44V2.png)
P value = 0.00367 (Fisher's exact test), Q value = 0.016
Table S172. Gene #44: '2p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
2P LOSS MUTATED | 0 | 11 | 1 | 2 |
2P LOSS WILD-TYPE | 62 | 95 | 59 | 88 |
Figure S172. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D44V9.png)
P value = 0.00332 (Fisher's exact test), Q value = 0.015
Table S173. Gene #44: '2p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
2P LOSS MUTATED | 0 | 0 | 2 | 10 | 0 | 2 |
2P LOSS WILD-TYPE | 70 | 41 | 38 | 72 | 25 | 58 |
Figure S173. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D44V10.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.0011
Table S174. Gene #45: '2q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
2Q LOSS MUTATED | 3 | 13 | 2 |
2Q LOSS WILD-TYPE | 270 | 121 | 83 |
Figure S174. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D45V1.png)
P value = 0.0207 (Fisher's exact test), Q value = 0.061
Table S175. Gene #45: '2q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
2Q LOSS MUTATED | 1 | 10 | 7 |
2Q LOSS WILD-TYPE | 159 | 155 | 160 |
Figure S175. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D45V2.png)
P value = 0.0349 (Fisher's exact test), Q value = 0.087
Table S176. Gene #45: '2q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
2Q LOSS MUTATED | 3 | 2 | 0 | 10 | 3 |
2Q LOSS WILD-TYPE | 144 | 96 | 59 | 118 | 53 |
Figure S176. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D45V8.png)
P value = 0.00855 (Fisher's exact test), Q value = 0.031
Table S177. Gene #45: '2q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
2Q LOSS MUTATED | 0 | 11 | 1 | 3 |
2Q LOSS WILD-TYPE | 62 | 95 | 59 | 87 |
Figure S177. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D45V9.png)
P value = 0.00099 (Fisher's exact test), Q value = 0.0061
Table S178. Gene #45: '2q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
2Q LOSS MUTATED | 0 | 0 | 1 | 11 | 0 | 3 |
2Q LOSS WILD-TYPE | 70 | 41 | 39 | 71 | 25 | 57 |
Figure S178. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D45V10.png)
P value = 0.0337 (Fisher's exact test), Q value = 0.086
Table S179. Gene #46: '3p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
3P LOSS MUTATED | 3 | 6 | 0 |
3P LOSS WILD-TYPE | 270 | 128 | 85 |
Figure S179. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D46V1.png)
P value = 0.0382 (Fisher's exact test), Q value = 0.092
Table S180. Gene #46: '3p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
3P LOSS MUTATED | 0 | 5 | 4 |
3P LOSS WILD-TYPE | 171 | 200 | 111 |
Figure S180. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D46V6.png)
P value = 0.0322 (Fisher's exact test), Q value = 0.083
Table S181. Gene #47: '3q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
3Q LOSS MUTATED | 0 | 3 | 1 | 0 | 0 |
3Q LOSS WILD-TYPE | 147 | 95 | 58 | 128 | 56 |
Figure S181. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D47V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S182. Gene #48: '4p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
4P LOSS MUTATED | 2 | 21 | 1 |
4P LOSS WILD-TYPE | 271 | 113 | 84 |
Figure S182. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D48V1.png)
P value = 0.0181 (Fisher's exact test), Q value = 0.055
Table S183. Gene #48: '4p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
4P LOSS MUTATED | 2 | 12 | 10 |
4P LOSS WILD-TYPE | 158 | 153 | 157 |
Figure S183. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D48V2.png)
P value = 0.0376 (Fisher's exact test), Q value = 0.092
Table S184. Gene #48: '4p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
4P LOSS MUTATED | 2 | 2 | 12 |
4P LOSS WILD-TYPE | 121 | 66 | 144 |
Figure S184. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D48V3.png)
P value = 0.0043 (Fisher's exact test), Q value = 0.018
Table S185. Gene #48: '4p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
4P LOSS MUTATED | 1 | 9 | 14 |
4P LOSS WILD-TYPE | 145 | 162 | 160 |
Figure S185. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D48V5.png)
P value = 0.0286 (Fisher's exact test), Q value = 0.077
Table S186. Gene #48: '4p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
4P LOSS MUTATED | 3 | 12 | 9 |
4P LOSS WILD-TYPE | 168 | 193 | 106 |
Figure S186. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D48V6.png)
P value = 0.00131 (Fisher's exact test), Q value = 0.0073
Table S187. Gene #48: '4p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
4P LOSS MUTATED | 6 | 1 | 16 |
4P LOSS WILD-TYPE | 152 | 146 | 167 |
Figure S187. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D48V7.png)
P value = 0.00259 (Fisher's exact test), Q value = 0.013
Table S188. Gene #48: '4p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
4P LOSS MUTATED | 6 | 1 | 2 | 14 | 0 |
4P LOSS WILD-TYPE | 141 | 97 | 57 | 114 | 56 |
Figure S188. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D48V8.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00046
Table S189. Gene #48: '4p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
4P LOSS MUTATED | 0 | 14 | 3 | 0 |
4P LOSS WILD-TYPE | 62 | 92 | 57 | 90 |
Figure S189. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D48V9.png)
P value = 7e-05 (Fisher's exact test), Q value = 7e-04
Table S190. Gene #48: '4p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
4P LOSS MUTATED | 1 | 0 | 7 | 9 | 0 | 0 |
4P LOSS WILD-TYPE | 69 | 41 | 33 | 73 | 25 | 60 |
Figure S190. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D48V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S191. Gene #49: '4q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
4Q LOSS MUTATED | 2 | 15 | 0 |
4Q LOSS WILD-TYPE | 271 | 119 | 85 |
Figure S191. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D49V1.png)
P value = 0.0065 (Fisher's exact test), Q value = 0.025
Table S192. Gene #49: '4q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
4Q LOSS MUTATED | 0 | 8 | 9 |
4Q LOSS WILD-TYPE | 146 | 163 | 165 |
Figure S192. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D49V5.png)
P value = 0.0484 (Fisher's exact test), Q value = 0.11
Table S193. Gene #49: '4q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
4Q LOSS MUTATED | 3 | 1 | 1 | 10 | 1 |
4Q LOSS WILD-TYPE | 144 | 97 | 58 | 118 | 55 |
Figure S193. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D49V8.png)
P value = 0.0147 (Fisher's exact test), Q value = 0.047
Table S194. Gene #49: '4q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
4Q LOSS MUTATED | 0 | 9 | 2 | 1 |
4Q LOSS WILD-TYPE | 62 | 97 | 58 | 89 |
Figure S194. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D49V9.png)
P value = 0.00504 (Fisher's exact test), Q value = 0.021
Table S195. Gene #49: '4q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
4Q LOSS MUTATED | 2 | 0 | 6 | 4 | 0 | 0 |
4Q LOSS WILD-TYPE | 68 | 41 | 34 | 78 | 25 | 60 |
Figure S195. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D49V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00026
Table S196. Gene #50: '5p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
5P LOSS MUTATED | 1 | 11 | 0 |
5P LOSS WILD-TYPE | 272 | 123 | 85 |
Figure S196. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D50V1.png)
P value = 0.0388 (Fisher's exact test), Q value = 0.092
Table S197. Gene #50: '5p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
5P LOSS MUTATED | 0 | 6 | 6 |
5P LOSS WILD-TYPE | 146 | 165 | 168 |
Figure S197. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D50V5.png)
P value = 0.00557 (Fisher's exact test), Q value = 0.022
Table S198. Gene #50: '5p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
5P LOSS MUTATED | 0 | 6 | 6 |
5P LOSS WILD-TYPE | 171 | 199 | 109 |
Figure S198. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D50V6.png)
P value = 0.00291 (Fisher's exact test), Q value = 0.014
Table S199. Gene #50: '5p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
5P LOSS MUTATED | 0 | 1 | 4 | 6 | 0 |
5P LOSS WILD-TYPE | 147 | 97 | 55 | 122 | 56 |
Figure S199. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D50V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S200. Gene #51: '5q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
5Q LOSS MUTATED | 0 | 22 | 0 |
5Q LOSS WILD-TYPE | 273 | 112 | 85 |
Figure S200. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D51V1.png)
P value = 0.00279 (Fisher's exact test), Q value = 0.013
Table S201. Gene #51: '5q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
5Q LOSS MUTATED | 1 | 13 | 8 |
5Q LOSS WILD-TYPE | 159 | 152 | 159 |
Figure S201. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D51V2.png)
P value = 0.012 (Fisher's exact test), Q value = 0.041
Table S202. Gene #51: '5q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
5Q LOSS MUTATED | 1 | 11 | 10 |
5Q LOSS WILD-TYPE | 145 | 160 | 164 |
Figure S202. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D51V5.png)
P value = 0.002 (Fisher's exact test), Q value = 0.01
Table S203. Gene #51: '5q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
5Q LOSS MUTATED | 1 | 15 | 6 |
5Q LOSS WILD-TYPE | 170 | 190 | 109 |
Figure S203. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D51V6.png)
P value = 0.00112 (Fisher's exact test), Q value = 0.0065
Table S204. Gene #51: '5q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
5Q LOSS MUTATED | 1 | 2 | 5 | 12 | 1 |
5Q LOSS WILD-TYPE | 146 | 96 | 54 | 116 | 55 |
Figure S204. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D51V8.png)
P value = 0.027 (Fisher's exact test), Q value = 0.074
Table S205. Gene #51: '5q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
5Q LOSS MUTATED | 0 | 0 | 3 | 7 | 0 | 2 |
5Q LOSS WILD-TYPE | 70 | 41 | 37 | 75 | 25 | 58 |
Figure S205. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D51V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S206. Gene #52: '6p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
6P LOSS MUTATED | 4 | 21 | 0 |
6P LOSS WILD-TYPE | 269 | 113 | 85 |
Figure S206. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D52V1.png)
P value = 0.0153 (Fisher's exact test), Q value = 0.048
Table S207. Gene #52: '6p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
6P LOSS MUTATED | 2 | 11 | 12 |
6P LOSS WILD-TYPE | 158 | 154 | 155 |
Figure S207. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D52V2.png)
P value = 0.00027 (Fisher's exact test), Q value = 0.0021
Table S208. Gene #52: '6p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
6P LOSS MUTATED | 0 | 10 | 15 |
6P LOSS WILD-TYPE | 146 | 161 | 159 |
Figure S208. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D52V5.png)
P value = 0.00283 (Fisher's exact test), Q value = 0.013
Table S209. Gene #52: '6p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
6P LOSS MUTATED | 2 | 12 | 11 |
6P LOSS WILD-TYPE | 169 | 193 | 104 |
Figure S209. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D52V6.png)
P value = 0.0313 (Fisher's exact test), Q value = 0.082
Table S210. Gene #52: '6p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
6P LOSS MUTATED | 2 | 5 | 4 | 12 | 2 |
6P LOSS WILD-TYPE | 145 | 93 | 55 | 116 | 54 |
Figure S210. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D52V8.png)
P value = 0.0144 (Fisher's exact test), Q value = 0.047
Table S211. Gene #52: '6p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
6P LOSS MUTATED | 0 | 11 | 2 | 3 |
6P LOSS WILD-TYPE | 62 | 95 | 58 | 87 |
Figure S211. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D52V9.png)
P value = 0.00354 (Fisher's exact test), Q value = 0.016
Table S212. Gene #52: '6p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
6P LOSS MUTATED | 0 | 0 | 5 | 8 | 0 | 3 |
6P LOSS WILD-TYPE | 70 | 41 | 35 | 74 | 25 | 57 |
Figure S212. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D52V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S213. Gene #53: '6q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
6Q LOSS MUTATED | 5 | 32 | 3 |
6Q LOSS WILD-TYPE | 268 | 102 | 82 |
Figure S213. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D53V1.png)
P value = 0.0347 (Fisher's exact test), Q value = 0.087
Table S214. Gene #53: '6q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
6Q LOSS MUTATED | 6 | 17 | 17 |
6Q LOSS WILD-TYPE | 154 | 148 | 150 |
Figure S214. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D53V2.png)
P value = 0.0262 (Fisher's exact test), Q value = 0.073
Table S215. Gene #53: '6q loss' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
6Q LOSS MUTATED | 4 | 4 | 18 |
6Q LOSS WILD-TYPE | 119 | 64 | 138 |
Figure S215. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D53V3.png)
P value = 0.028 (Fisher's exact test), Q value = 0.076
Table S216. Gene #53: '6q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
6Q LOSS MUTATED | 4 | 8 | 3 | 11 |
6Q LOSS WILD-TYPE | 70 | 105 | 89 | 57 |
Figure S216. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D53V4.png)
P value = 0.00031 (Fisher's exact test), Q value = 0.0024
Table S217. Gene #53: '6q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
6Q LOSS MUTATED | 2 | 19 | 19 |
6Q LOSS WILD-TYPE | 144 | 152 | 155 |
Figure S217. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D53V5.png)
P value = 0.00092 (Fisher's exact test), Q value = 0.0057
Table S218. Gene #53: '6q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
6Q LOSS MUTATED | 4 | 24 | 12 |
6Q LOSS WILD-TYPE | 167 | 181 | 103 |
Figure S218. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D53V6.png)
P value = 0.0129 (Fisher's exact test), Q value = 0.043
Table S219. Gene #53: '6q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
6Q LOSS MUTATED | 8 | 8 | 24 |
6Q LOSS WILD-TYPE | 150 | 139 | 159 |
Figure S219. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D53V7.png)
P value = 0.0482 (Fisher's exact test), Q value = 0.11
Table S220. Gene #53: '6q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
6Q LOSS MUTATED | 5 | 8 | 7 | 16 | 4 |
6Q LOSS WILD-TYPE | 142 | 90 | 52 | 112 | 52 |
Figure S220. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D53V8.png)
P value = 0.00438 (Fisher's exact test), Q value = 0.018
Table S221. Gene #53: '6q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
6Q LOSS MUTATED | 1 | 17 | 2 | 8 |
6Q LOSS WILD-TYPE | 61 | 89 | 58 | 82 |
Figure S221. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D53V9.png)
P value = 0.00198 (Fisher's exact test), Q value = 0.01
Table S222. Gene #53: '6q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
6Q LOSS MUTATED | 2 | 1 | 8 | 13 | 0 | 4 |
6Q LOSS WILD-TYPE | 68 | 40 | 32 | 69 | 25 | 56 |
Figure S222. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D53V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S223. Gene #54: '8p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
8P LOSS MUTATED | 104 | 55 | 9 |
8P LOSS WILD-TYPE | 169 | 79 | 76 |
Figure S223. Get High-res Image Gene #54: '8p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D54V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S224. Gene #54: '8p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
8P LOSS MUTATED | 27 | 56 | 85 |
8P LOSS WILD-TYPE | 133 | 109 | 82 |
Figure S224. Get High-res Image Gene #54: '8p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D54V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S225. Gene #54: '8p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
8P LOSS MUTATED | 33 | 46 | 89 |
8P LOSS WILD-TYPE | 113 | 125 | 85 |
Figure S225. Get High-res Image Gene #54: '8p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D54V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S226. Gene #54: '8p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
8P LOSS MUTATED | 39 | 68 | 61 |
8P LOSS WILD-TYPE | 132 | 137 | 54 |
Figure S226. Get High-res Image Gene #54: '8p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D54V6.png)
P value = 0.00035 (Fisher's exact test), Q value = 0.0027
Table S227. Gene #54: '8p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
8P LOSS MUTATED | 43 | 41 | 83 |
8P LOSS WILD-TYPE | 115 | 106 | 100 |
Figure S227. Get High-res Image Gene #54: '8p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D54V7.png)
P value = 0.0316 (Fisher's exact test), Q value = 0.082
Table S228. Gene #54: '8p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
8P LOSS MUTATED | 16 | 7 | 18 | 24 | 5 | 23 |
8P LOSS WILD-TYPE | 54 | 34 | 22 | 58 | 20 | 37 |
Figure S228. Get High-res Image Gene #54: '8p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D54V10.png)
P value = 0.0295 (Fisher's exact test), Q value = 0.079
Table S229. Gene #55: '8q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
8Q LOSS MUTATED | 11 | 12 | 1 |
8Q LOSS WILD-TYPE | 262 | 122 | 84 |
Figure S229. Get High-res Image Gene #55: '8q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D55V1.png)
P value = 0.00112 (Fisher's exact test), Q value = 0.0065
Table S230. Gene #55: '8q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
8Q LOSS MUTATED | 1 | 8 | 15 |
8Q LOSS WILD-TYPE | 159 | 157 | 152 |
Figure S230. Get High-res Image Gene #55: '8q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D55V2.png)
P value = 0.0104 (Fisher's exact test), Q value = 0.037
Table S231. Gene #55: '8q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
8Q LOSS MUTATED | 2 | 7 | 15 |
8Q LOSS WILD-TYPE | 144 | 164 | 159 |
Figure S231. Get High-res Image Gene #55: '8q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D55V5.png)
P value = 0.0249 (Fisher's exact test), Q value = 0.07
Table S232. Gene #55: '8q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
8Q LOSS MUTATED | 4 | 9 | 11 |
8Q LOSS WILD-TYPE | 167 | 196 | 104 |
Figure S232. Get High-res Image Gene #55: '8q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D55V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S233. Gene #56: '9p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
9P LOSS MUTATED | 5 | 16 | 0 |
9P LOSS WILD-TYPE | 268 | 118 | 85 |
Figure S233. Get High-res Image Gene #56: '9p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D56V1.png)
P value = 0.00721 (Fisher's exact test), Q value = 0.027
Table S234. Gene #56: '9p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
9P LOSS MUTATED | 2 | 0 | 12 |
9P LOSS WILD-TYPE | 121 | 68 | 144 |
Figure S234. Get High-res Image Gene #56: '9p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D56V3.png)
P value = 0.00528 (Fisher's exact test), Q value = 0.021
Table S235. Gene #56: '9p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
9P LOSS MUTATED | 2 | 1 | 3 | 8 |
9P LOSS WILD-TYPE | 72 | 112 | 89 | 60 |
Figure S235. Get High-res Image Gene #56: '9p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D56V4.png)
P value = 0.00423 (Fisher's exact test), Q value = 0.018
Table S236. Gene #56: '9p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
9P LOSS MUTATED | 1 | 6 | 14 |
9P LOSS WILD-TYPE | 145 | 165 | 160 |
Figure S236. Get High-res Image Gene #56: '9p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D56V5.png)
P value = 0.0225 (Fisher's exact test), Q value = 0.065
Table S237. Gene #56: '9p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
9P LOSS MUTATED | 3 | 8 | 10 |
9P LOSS WILD-TYPE | 168 | 197 | 105 |
Figure S237. Get High-res Image Gene #56: '9p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D56V6.png)
P value = 0.00134 (Fisher's exact test), Q value = 0.0074
Table S238. Gene #57: '9q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
9Q LOSS MUTATED | 2 | 8 | 0 |
9Q LOSS WILD-TYPE | 271 | 126 | 85 |
Figure S238. Get High-res Image Gene #57: '9q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D57V1.png)
P value = 0.0373 (Fisher's exact test), Q value = 0.091
Table S239. Gene #57: '9q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
9Q LOSS MUTATED | 0 | 0 | 4 | 3 | 0 | 1 |
9Q LOSS WILD-TYPE | 70 | 41 | 36 | 79 | 25 | 59 |
Figure S239. Get High-res Image Gene #57: '9q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D57V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S240. Gene #58: '10p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
10P LOSS MUTATED | 9 | 30 | 2 |
10P LOSS WILD-TYPE | 264 | 104 | 83 |
Figure S240. Get High-res Image Gene #58: '10p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D58V1.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00055
Table S241. Gene #58: '10p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
10P LOSS MUTATED | 2 | 17 | 22 |
10P LOSS WILD-TYPE | 158 | 148 | 145 |
Figure S241. Get High-res Image Gene #58: '10p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D58V2.png)
P value = 2e-04 (Fisher's exact test), Q value = 0.0017
Table S242. Gene #58: '10p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
10P LOSS MUTATED | 2 | 18 | 21 |
10P LOSS WILD-TYPE | 144 | 153 | 153 |
Figure S242. Get High-res Image Gene #58: '10p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D58V5.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00062
Table S243. Gene #58: '10p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
10P LOSS MUTATED | 3 | 22 | 16 |
10P LOSS WILD-TYPE | 168 | 183 | 99 |
Figure S243. Get High-res Image Gene #58: '10p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D58V6.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00062
Table S244. Gene #58: '10p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
10P LOSS MUTATED | 3 | 5 | 7 | 22 | 2 |
10P LOSS WILD-TYPE | 144 | 93 | 52 | 106 | 54 |
Figure S244. Get High-res Image Gene #58: '10p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D58V8.png)
P value = 0.0114 (Fisher's exact test), Q value = 0.039
Table S245. Gene #58: '10p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
10P LOSS MUTATED | 0 | 12 | 3 | 10 |
10P LOSS WILD-TYPE | 62 | 94 | 57 | 80 |
Figure S245. Get High-res Image Gene #58: '10p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D58V9.png)
P value = 0.00014 (Fisher's exact test), Q value = 0.0012
Table S246. Gene #58: '10p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
10P LOSS MUTATED | 0 | 0 | 6 | 13 | 0 | 6 |
10P LOSS WILD-TYPE | 70 | 41 | 34 | 69 | 25 | 54 |
Figure S246. Get High-res Image Gene #58: '10p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D58V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S247. Gene #59: '10q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
10Q LOSS MUTATED | 9 | 31 | 3 |
10Q LOSS WILD-TYPE | 264 | 103 | 82 |
Figure S247. Get High-res Image Gene #59: '10q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D59V1.png)
P value = 0.00078 (Fisher's exact test), Q value = 0.005
Table S248. Gene #59: '10q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
10Q LOSS MUTATED | 4 | 17 | 22 |
10Q LOSS WILD-TYPE | 156 | 148 | 145 |
Figure S248. Get High-res Image Gene #59: '10q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D59V2.png)
P value = 0.00221 (Fisher's exact test), Q value = 0.011
Table S249. Gene #59: '10q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
10Q LOSS MUTATED | 4 | 16 | 23 |
10Q LOSS WILD-TYPE | 142 | 155 | 151 |
Figure S249. Get High-res Image Gene #59: '10q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D59V5.png)
P value = 4e-04 (Fisher's exact test), Q value = 0.0029
Table S250. Gene #59: '10q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
10Q LOSS MUTATED | 5 | 20 | 18 |
10Q LOSS WILD-TYPE | 166 | 185 | 97 |
Figure S250. Get High-res Image Gene #59: '10q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D59V6.png)
P value = 0.0384 (Fisher's exact test), Q value = 0.092
Table S251. Gene #59: '10q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
10Q LOSS MUTATED | 8 | 10 | 23 |
10Q LOSS WILD-TYPE | 150 | 137 | 160 |
Figure S251. Get High-res Image Gene #59: '10q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D59V7.png)
P value = 0.00125 (Fisher's exact test), Q value = 0.007
Table S252. Gene #59: '10q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
10Q LOSS MUTATED | 5 | 4 | 6 | 21 | 5 |
10Q LOSS WILD-TYPE | 142 | 94 | 53 | 107 | 51 |
Figure S252. Get High-res Image Gene #59: '10q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D59V8.png)
P value = 0.00178 (Fisher's exact test), Q value = 0.0094
Table S253. Gene #59: '10q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
10Q LOSS MUTATED | 0 | 14 | 3 | 13 |
10Q LOSS WILD-TYPE | 62 | 92 | 57 | 77 |
Figure S253. Get High-res Image Gene #59: '10q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D59V9.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.0011
Table S254. Gene #59: '10q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
10Q LOSS MUTATED | 1 | 0 | 9 | 12 | 0 | 8 |
10Q LOSS WILD-TYPE | 69 | 41 | 31 | 70 | 25 | 52 |
Figure S254. Get High-res Image Gene #59: '10q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D59V10.png)
P value = 0.00214 (Fisher's exact test), Q value = 0.011
Table S255. Gene #60: '11p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
11P LOSS MUTATED | 1 | 7 | 0 |
11P LOSS WILD-TYPE | 272 | 127 | 85 |
Figure S255. Get High-res Image Gene #60: '11p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D60V1.png)
P value = 0.0135 (Fisher's exact test), Q value = 0.044
Table S256. Gene #61: '11q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
11Q LOSS MUTATED | 0 | 4 | 1 |
11Q LOSS WILD-TYPE | 273 | 130 | 84 |
Figure S256. Get High-res Image Gene #61: '11q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D61V1.png)
P value = 0.0205 (Fisher's exact test), Q value = 0.061
Table S257. Gene #61: '11q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
11Q LOSS MUTATED | 0 | 5 | 0 | 0 |
11Q LOSS WILD-TYPE | 62 | 101 | 60 | 90 |
Figure S257. Get High-res Image Gene #61: '11q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D61V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S258. Gene #62: '12p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
12P LOSS MUTATED | 22 | 26 | 0 |
12P LOSS WILD-TYPE | 251 | 108 | 85 |
Figure S258. Get High-res Image Gene #62: '12p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D62V1.png)
P value = 0.0495 (Fisher's exact test), Q value = 0.11
Table S259. Gene #62: '12p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
12P LOSS MUTATED | 11 | 12 | 25 |
12P LOSS WILD-TYPE | 135 | 159 | 149 |
Figure S259. Get High-res Image Gene #62: '12p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D62V5.png)
P value = 0.0167 (Fisher's exact test), Q value = 0.051
Table S260. Gene #62: '12p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
12P LOSS MUTATED | 13 | 4 | 11 | 15 | 2 |
12P LOSS WILD-TYPE | 134 | 94 | 48 | 113 | 54 |
Figure S260. Get High-res Image Gene #62: '12p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D62V8.png)
P value = 0.00697 (Fisher's exact test), Q value = 0.026
Table S261. Gene #62: '12p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
12P LOSS MUTATED | 4 | 20 | 3 | 5 |
12P LOSS WILD-TYPE | 58 | 86 | 57 | 85 |
Figure S261. Get High-res Image Gene #62: '12p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D62V9.png)
P value = 0.00277 (Fisher's exact test), Q value = 0.013
Table S262. Gene #62: '12p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
12P LOSS MUTATED | 3 | 0 | 7 | 15 | 3 | 4 |
12P LOSS WILD-TYPE | 67 | 41 | 33 | 67 | 22 | 56 |
Figure S262. Get High-res Image Gene #62: '12p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D62V10.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00036
Table S263. Gene #63: '12q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
12Q LOSS MUTATED | 5 | 15 | 0 |
12Q LOSS WILD-TYPE | 268 | 119 | 85 |
Figure S263. Get High-res Image Gene #63: '12q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D63V1.png)
P value = 0.00877 (Fisher's exact test), Q value = 0.032
Table S264. Gene #63: '12q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
12Q LOSS MUTATED | 0 | 0 | 5 | 7 | 1 | 2 |
12Q LOSS WILD-TYPE | 70 | 41 | 35 | 75 | 24 | 58 |
Figure S264. Get High-res Image Gene #63: '12q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D63V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S265. Gene #64: '13q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
13Q LOSS MUTATED | 19 | 49 | 9 |
13Q LOSS WILD-TYPE | 254 | 85 | 76 |
Figure S265. Get High-res Image Gene #64: '13q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D64V1.png)
P value = 0.0125 (Fisher's exact test), Q value = 0.042
Table S266. Gene #64: '13q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
13Q LOSS MUTATED | 10 | 21 | 6 | 16 |
13Q LOSS WILD-TYPE | 64 | 92 | 86 | 52 |
Figure S266. Get High-res Image Gene #64: '13q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D64V4.png)
P value = 0.0417 (Fisher's exact test), Q value = 0.098
Table S267. Gene #64: '13q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
13Q LOSS MUTATED | 14 | 30 | 33 |
13Q LOSS WILD-TYPE | 132 | 141 | 141 |
Figure S267. Get High-res Image Gene #64: '13q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D64V5.png)
P value = 0.0407 (Fisher's exact test), Q value = 0.096
Table S268. Gene #64: '13q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
13Q LOSS MUTATED | 16 | 15 | 9 | 30 | 5 |
13Q LOSS WILD-TYPE | 131 | 83 | 50 | 98 | 51 |
Figure S268. Get High-res Image Gene #64: '13q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D64V8.png)
P value = 2e-04 (Fisher's exact test), Q value = 0.0017
Table S269. Gene #64: '13q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
13Q LOSS MUTATED | 4 | 5 | 14 | 21 | 2 | 6 |
13Q LOSS WILD-TYPE | 66 | 36 | 26 | 61 | 23 | 54 |
Figure S269. Get High-res Image Gene #64: '13q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D64V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S270. Gene #65: '14q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
14Q LOSS MUTATED | 6 | 18 | 1 |
14Q LOSS WILD-TYPE | 267 | 116 | 84 |
Figure S270. Get High-res Image Gene #65: '14q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D65V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S271. Gene #66: '15q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
15Q LOSS MUTATED | 4 | 30 | 2 |
15Q LOSS WILD-TYPE | 269 | 104 | 83 |
Figure S271. Get High-res Image Gene #66: '15q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D66V1.png)
P value = 0.0018 (Fisher's exact test), Q value = 0.0094
Table S272. Gene #66: '15q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
15Q LOSS MUTATED | 3 | 18 | 15 |
15Q LOSS WILD-TYPE | 157 | 147 | 152 |
Figure S272. Get High-res Image Gene #66: '15q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D66V2.png)
P value = 0.00067 (Fisher's exact test), Q value = 0.0044
Table S273. Gene #66: '15q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
15Q LOSS MUTATED | 2 | 20 | 14 |
15Q LOSS WILD-TYPE | 144 | 151 | 160 |
Figure S273. Get High-res Image Gene #66: '15q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D66V5.png)
P value = 0.00616 (Fisher's exact test), Q value = 0.024
Table S274. Gene #66: '15q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
15Q LOSS MUTATED | 5 | 23 | 8 |
15Q LOSS WILD-TYPE | 166 | 182 | 107 |
Figure S274. Get High-res Image Gene #66: '15q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D66V6.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.0011
Table S275. Gene #66: '15q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
15Q LOSS MUTATED | 2 | 10 | 23 |
15Q LOSS WILD-TYPE | 156 | 137 | 160 |
Figure S275. Get High-res Image Gene #66: '15q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D66V7.png)
P value = 0.00726 (Fisher's exact test), Q value = 0.027
Table S276. Gene #66: '15q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
15Q LOSS MUTATED | 3 | 7 | 3 | 15 | 7 |
15Q LOSS WILD-TYPE | 144 | 91 | 56 | 113 | 49 |
Figure S276. Get High-res Image Gene #66: '15q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D66V8.png)
P value = 0.00116 (Fisher's exact test), Q value = 0.0067
Table S277. Gene #66: '15q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
15Q LOSS MUTATED | 0 | 17 | 3 | 7 |
15Q LOSS WILD-TYPE | 62 | 89 | 57 | 83 |
Figure S277. Get High-res Image Gene #66: '15q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D66V9.png)
P value = 0.00018 (Fisher's exact test), Q value = 0.0015
Table S278. Gene #66: '15q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
15Q LOSS MUTATED | 0 | 1 | 8 | 12 | 0 | 6 |
15Q LOSS WILD-TYPE | 70 | 40 | 32 | 70 | 25 | 54 |
Figure S278. Get High-res Image Gene #66: '15q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D66V10.png)
P value = 0.00169 (Fisher's exact test), Q value = 0.009
Table S279. Gene #67: '16p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
16P LOSS MUTATED | 11 | 18 | 3 |
16P LOSS WILD-TYPE | 262 | 116 | 82 |
Figure S279. Get High-res Image Gene #67: '16p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D67V1.png)
P value = 0.0308 (Fisher's exact test), Q value = 0.081
Table S280. Gene #67: '16p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
16P LOSS MUTATED | 2 | 3 | 5 | 14 | 1 | 3 |
16P LOSS WILD-TYPE | 68 | 38 | 35 | 68 | 24 | 57 |
Figure S280. Get High-res Image Gene #67: '16p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D67V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S281. Gene #68: '16q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
16Q LOSS MUTATED | 40 | 62 | 5 |
16Q LOSS WILD-TYPE | 233 | 72 | 80 |
Figure S281. Get High-res Image Gene #68: '16q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D68V1.png)
P value = 0.00075 (Fisher's exact test), Q value = 0.0048
Table S282. Gene #68: '16q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
16Q LOSS MUTATED | 19 | 44 | 44 |
16Q LOSS WILD-TYPE | 141 | 121 | 123 |
Figure S282. Get High-res Image Gene #68: '16q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D68V2.png)
P value = 0.0301 (Fisher's exact test), Q value = 0.08
Table S283. Gene #68: '16q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
16Q LOSS MUTATED | 21 | 42 | 44 |
16Q LOSS WILD-TYPE | 125 | 129 | 130 |
Figure S283. Get High-res Image Gene #68: '16q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D68V5.png)
P value = 0.0309 (Fisher's exact test), Q value = 0.081
Table S284. Gene #68: '16q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
16Q LOSS MUTATED | 26 | 51 | 30 |
16Q LOSS WILD-TYPE | 145 | 154 | 85 |
Figure S284. Get High-res Image Gene #68: '16q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D68V6.png)
P value = 0.00045 (Fisher's exact test), Q value = 0.0032
Table S285. Gene #68: '16q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
16Q LOSS MUTATED | 20 | 15 | 18 | 42 | 10 |
16Q LOSS WILD-TYPE | 127 | 83 | 41 | 86 | 46 |
Figure S285. Get High-res Image Gene #68: '16q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D68V8.png)
P value = 0.00428 (Fisher's exact test), Q value = 0.018
Table S286. Gene #68: '16q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
16Q LOSS MUTATED | 6 | 35 | 12 | 18 |
16Q LOSS WILD-TYPE | 56 | 71 | 48 | 72 |
Figure S286. Get High-res Image Gene #68: '16q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D68V9.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00078
Table S287. Gene #68: '16q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
16Q LOSS MUTATED | 7 | 4 | 15 | 30 | 3 | 12 |
16Q LOSS WILD-TYPE | 63 | 37 | 25 | 52 | 22 | 48 |
Figure S287. Get High-res Image Gene #68: '16q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D68V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S288. Gene #69: '17p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
17P LOSS MUTATED | 21 | 52 | 3 |
17P LOSS WILD-TYPE | 252 | 82 | 82 |
Figure S288. Get High-res Image Gene #69: '17p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D69V1.png)
P value = 0.00122 (Fisher's exact test), Q value = 0.0069
Table S289. Gene #69: '17p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
17P LOSS MUTATED | 12 | 29 | 35 |
17P LOSS WILD-TYPE | 148 | 136 | 132 |
Figure S289. Get High-res Image Gene #69: '17p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D69V2.png)
P value = 0.0223 (Fisher's exact test), Q value = 0.064
Table S290. Gene #69: '17p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
17P LOSS MUTATED | 17 | 5 | 33 |
17P LOSS WILD-TYPE | 106 | 63 | 123 |
Figure S290. Get High-res Image Gene #69: '17p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D69V3.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.0011
Table S291. Gene #69: '17p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
17P LOSS MUTATED | 10 | 25 | 41 |
17P LOSS WILD-TYPE | 136 | 146 | 133 |
Figure S291. Get High-res Image Gene #69: '17p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D69V5.png)
P value = 0.00168 (Fisher's exact test), Q value = 0.009
Table S292. Gene #69: '17p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
17P LOSS MUTATED | 16 | 31 | 29 |
17P LOSS WILD-TYPE | 155 | 174 | 86 |
Figure S292. Get High-res Image Gene #69: '17p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D69V6.png)
P value = 0.0319 (Fisher's exact test), Q value = 0.083
Table S293. Gene #69: '17p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
17P LOSS MUTATED | 15 | 11 | 10 | 30 | 9 |
17P LOSS WILD-TYPE | 132 | 87 | 49 | 98 | 47 |
Figure S293. Get High-res Image Gene #69: '17p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D69V8.png)
P value = 0.0225 (Fisher's exact test), Q value = 0.065
Table S294. Gene #69: '17p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
17P LOSS MUTATED | 3 | 23 | 11 | 15 |
17P LOSS WILD-TYPE | 59 | 83 | 49 | 75 |
Figure S294. Get High-res Image Gene #69: '17p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D69V9.png)
P value = 7e-05 (Fisher's exact test), Q value = 7e-04
Table S295. Gene #69: '17p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
17P LOSS MUTATED | 5 | 1 | 15 | 19 | 2 | 10 |
17P LOSS WILD-TYPE | 65 | 40 | 25 | 63 | 23 | 50 |
Figure S295. Get High-res Image Gene #69: '17p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D69V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S296. Gene #70: '17q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
17Q LOSS MUTATED | 2 | 16 | 2 |
17Q LOSS WILD-TYPE | 271 | 118 | 83 |
Figure S296. Get High-res Image Gene #70: '17q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D70V1.png)
P value = 0.0108 (Fisher's exact test), Q value = 0.037
Table S297. Gene #70: '17q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
17Q LOSS MUTATED | 1 | 11 | 8 |
17Q LOSS WILD-TYPE | 159 | 154 | 159 |
Figure S297. Get High-res Image Gene #70: '17q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D70V2.png)
P value = 0.00095 (Fisher's exact test), Q value = 0.0059
Table S298. Gene #70: '17q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
17Q LOSS MUTATED | 0 | 7 | 13 |
17Q LOSS WILD-TYPE | 146 | 164 | 161 |
Figure S298. Get High-res Image Gene #70: '17q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D70V5.png)
P value = 0.0358 (Fisher's exact test), Q value = 0.089
Table S299. Gene #70: '17q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
17Q LOSS MUTATED | 2 | 11 | 7 |
17Q LOSS WILD-TYPE | 169 | 194 | 108 |
Figure S299. Get High-res Image Gene #70: '17q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D70V6.png)
P value = 0.0127 (Fisher's exact test), Q value = 0.043
Table S300. Gene #70: '17q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
17Q LOSS MUTATED | 1 | 8 | 11 |
17Q LOSS WILD-TYPE | 157 | 139 | 172 |
Figure S300. Get High-res Image Gene #70: '17q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D70V7.png)
P value = 0.0466 (Fisher's exact test), Q value = 0.11
Table S301. Gene #70: '17q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
17Q LOSS MUTATED | 1 | 7 | 2 | 7 | 3 |
17Q LOSS WILD-TYPE | 146 | 91 | 57 | 121 | 53 |
Figure S301. Get High-res Image Gene #70: '17q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D70V8.png)
P value = 0.0306 (Fisher's exact test), Q value = 0.081
Table S302. Gene #70: '17q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
17Q LOSS MUTATED | 0 | 10 | 2 | 3 |
17Q LOSS WILD-TYPE | 62 | 96 | 58 | 87 |
Figure S302. Get High-res Image Gene #70: '17q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D70V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S303. Gene #71: '18p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
18P LOSS MUTATED | 21 | 43 | 4 |
18P LOSS WILD-TYPE | 252 | 91 | 81 |
Figure S303. Get High-res Image Gene #71: '18p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D71V1.png)
P value = 0.00548 (Fisher's exact test), Q value = 0.022
Table S304. Gene #71: '18p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
18P LOSS MUTATED | 11 | 29 | 28 |
18P LOSS WILD-TYPE | 149 | 136 | 139 |
Figure S304. Get High-res Image Gene #71: '18p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D71V2.png)
P value = 0.0101 (Fisher's exact test), Q value = 0.036
Table S305. Gene #71: '18p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
18P LOSS MUTATED | 12 | 4 | 30 |
18P LOSS WILD-TYPE | 111 | 64 | 126 |
Figure S305. Get High-res Image Gene #71: '18p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D71V3.png)
P value = 0.0032 (Fisher's exact test), Q value = 0.015
Table S306. Gene #71: '18p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
18P LOSS MUTATED | 8 | 11 | 8 | 19 |
18P LOSS WILD-TYPE | 66 | 102 | 84 | 49 |
Figure S306. Get High-res Image Gene #71: '18p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D71V4.png)
P value = 0.00329 (Fisher's exact test), Q value = 0.015
Table S307. Gene #71: '18p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
18P LOSS MUTATED | 9 | 30 | 29 |
18P LOSS WILD-TYPE | 137 | 141 | 145 |
Figure S307. Get High-res Image Gene #71: '18p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D71V5.png)
P value = 0.0489 (Fisher's exact test), Q value = 0.11
Table S308. Gene #71: '18p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
18P LOSS MUTATED | 15 | 35 | 18 |
18P LOSS WILD-TYPE | 156 | 170 | 97 |
Figure S308. Get High-res Image Gene #71: '18p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D71V6.png)
P value = 0.0302 (Fisher's exact test), Q value = 0.08
Table S309. Gene #71: '18p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
18P LOSS MUTATED | 15 | 7 | 12 | 24 | 9 |
18P LOSS WILD-TYPE | 132 | 91 | 47 | 104 | 47 |
Figure S309. Get High-res Image Gene #71: '18p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D71V8.png)
P value = 0.0102 (Fisher's exact test), Q value = 0.036
Table S310. Gene #71: '18p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
18P LOSS MUTATED | 2 | 22 | 8 | 14 |
18P LOSS WILD-TYPE | 60 | 84 | 52 | 76 |
Figure S310. Get High-res Image Gene #71: '18p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D71V9.png)
P value = 0.00505 (Fisher's exact test), Q value = 0.021
Table S311. Gene #71: '18p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
18P LOSS MUTATED | 5 | 2 | 11 | 17 | 1 | 10 |
18P LOSS WILD-TYPE | 65 | 39 | 29 | 65 | 24 | 50 |
Figure S311. Get High-res Image Gene #71: '18p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D71V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S312. Gene #72: '18q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
18Q LOSS MUTATED | 30 | 64 | 7 |
18Q LOSS WILD-TYPE | 243 | 70 | 78 |
Figure S312. Get High-res Image Gene #72: '18q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D72V1.png)
P value = 0.00629 (Fisher's exact test), Q value = 0.024
Table S313. Gene #72: '18q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
18Q LOSS MUTATED | 20 | 39 | 42 |
18Q LOSS WILD-TYPE | 140 | 126 | 125 |
Figure S313. Get High-res Image Gene #72: '18q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D72V2.png)
P value = 0.00037 (Fisher's exact test), Q value = 0.0028
Table S314. Gene #72: '18q loss' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
18Q LOSS MUTATED | 15 | 8 | 46 |
18Q LOSS WILD-TYPE | 108 | 60 | 110 |
Figure S314. Get High-res Image Gene #72: '18q loss' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D72V3.png)
P value = 0.0014 (Fisher's exact test), Q value = 0.0076
Table S315. Gene #72: '18q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
18Q LOSS MUTATED | 10 | 22 | 12 | 25 |
18Q LOSS WILD-TYPE | 64 | 91 | 80 | 43 |
Figure S315. Get High-res Image Gene #72: '18q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D72V4.png)
P value = 0.00332 (Fisher's exact test), Q value = 0.015
Table S316. Gene #72: '18q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
18Q LOSS MUTATED | 17 | 39 | 45 |
18Q LOSS WILD-TYPE | 129 | 132 | 129 |
Figure S316. Get High-res Image Gene #72: '18q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D72V5.png)
P value = 0.0215 (Fisher's exact test), Q value = 0.063
Table S317. Gene #72: '18q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
18Q LOSS MUTATED | 24 | 47 | 30 |
18Q LOSS WILD-TYPE | 147 | 158 | 85 |
Figure S317. Get High-res Image Gene #72: '18q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D72V6.png)
P value = 0.00725 (Fisher's exact test), Q value = 0.027
Table S318. Gene #72: '18q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
18Q LOSS MUTATED | 25 | 23 | 51 |
18Q LOSS WILD-TYPE | 133 | 124 | 132 |
Figure S318. Get High-res Image Gene #72: '18q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D72V7.png)
P value = 0.00334 (Fisher's exact test), Q value = 0.015
Table S319. Gene #72: '18q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
18Q LOSS MUTATED | 21 | 12 | 17 | 37 | 12 |
18Q LOSS WILD-TYPE | 126 | 86 | 42 | 91 | 44 |
Figure S319. Get High-res Image Gene #72: '18q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D72V8.png)
P value = 0.0151 (Fisher's exact test), Q value = 0.048
Table S320. Gene #72: '18q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
18Q LOSS MUTATED | 6 | 32 | 11 | 19 |
18Q LOSS WILD-TYPE | 56 | 74 | 49 | 71 |
Figure S320. Get High-res Image Gene #72: '18q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D72V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S321. Gene #72: '18q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
18Q LOSS MUTATED | 6 | 3 | 18 | 26 | 3 | 12 |
18Q LOSS WILD-TYPE | 64 | 38 | 22 | 56 | 22 | 48 |
Figure S321. Get High-res Image Gene #72: '18q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D72V10.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.0017
Table S322. Gene #73: '19p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
19P LOSS MUTATED | 2 | 11 | 4 |
19P LOSS WILD-TYPE | 271 | 123 | 81 |
Figure S322. Get High-res Image Gene #73: '19p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D73V1.png)
P value = 0.003 (Fisher's exact test), Q value = 0.014
Table S323. Gene #73: '19p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
19P LOSS MUTATED | 0 | 9 | 0 | 1 |
19P LOSS WILD-TYPE | 62 | 97 | 60 | 89 |
Figure S323. Get High-res Image Gene #73: '19p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D73V9.png)
P value = 0.00996 (Fisher's exact test), Q value = 0.036
Table S324. Gene #73: '19p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
19P LOSS MUTATED | 0 | 0 | 1 | 8 | 0 | 1 |
19P LOSS WILD-TYPE | 70 | 41 | 39 | 74 | 25 | 59 |
Figure S324. Get High-res Image Gene #73: '19p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D73V10.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.0016
Table S325. Gene #74: '19q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
19Q LOSS MUTATED | 2 | 11 | 4 |
19Q LOSS WILD-TYPE | 271 | 123 | 81 |
Figure S325. Get High-res Image Gene #74: '19q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D74V1.png)
P value = 0.00268 (Fisher's exact test), Q value = 0.013
Table S326. Gene #74: '19q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
19Q LOSS MUTATED | 0 | 9 | 0 | 1 |
19Q LOSS WILD-TYPE | 62 | 97 | 60 | 89 |
Figure S326. Get High-res Image Gene #74: '19q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D74V9.png)
P value = 0.0107 (Fisher's exact test), Q value = 0.037
Table S327. Gene #74: '19q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
19Q LOSS MUTATED | 0 | 0 | 1 | 8 | 0 | 1 |
19Q LOSS WILD-TYPE | 70 | 41 | 39 | 74 | 25 | 59 |
Figure S327. Get High-res Image Gene #74: '19q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D74V10.png)
P value = 0.0377 (Fisher's exact test), Q value = 0.092
Table S328. Gene #75: '20p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
20P LOSS MUTATED | 8 | 10 | 1 |
20P LOSS WILD-TYPE | 265 | 124 | 84 |
Figure S328. Get High-res Image Gene #75: '20p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D75V1.png)
P value = 0.0275 (Fisher's exact test), Q value = 0.075
Table S329. Gene #76: '20q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
20Q LOSS MUTATED | 2 | 6 | 1 |
20Q LOSS WILD-TYPE | 271 | 128 | 84 |
Figure S329. Get High-res Image Gene #76: '20q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D76V1.png)
P value = 0.0382 (Fisher's exact test), Q value = 0.092
Table S330. Gene #76: '20q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
20Q LOSS MUTATED | 0 | 5 | 4 |
20Q LOSS WILD-TYPE | 171 | 200 | 111 |
Figure S330. Get High-res Image Gene #76: '20q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D76V6.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00036
Table S331. Gene #77: '21q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
21Q LOSS MUTATED | 7 | 17 | 0 |
21Q LOSS WILD-TYPE | 266 | 117 | 85 |
Figure S331. Get High-res Image Gene #77: '21q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D77V1.png)
P value = 0.00324 (Fisher's exact test), Q value = 0.015
Table S332. Gene #77: '21q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
21Q LOSS MUTATED | 2 | 6 | 16 |
21Q LOSS WILD-TYPE | 144 | 165 | 158 |
Figure S332. Get High-res Image Gene #77: '21q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D77V5.png)
P value = 0.0414 (Fisher's exact test), Q value = 0.097
Table S333. Gene #77: '21q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
21Q LOSS MUTATED | 1 | 1 | 6 | 7 | 0 | 3 |
21Q LOSS WILD-TYPE | 69 | 40 | 34 | 75 | 25 | 57 |
Figure S333. Get High-res Image Gene #77: '21q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D77V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S334. Gene #78: '22q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
22Q LOSS MUTATED | 12 | 32 | 3 |
22Q LOSS WILD-TYPE | 261 | 102 | 82 |
Figure S334. Get High-res Image Gene #78: '22q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D78V1.png)
P value = 0.0181 (Fisher's exact test), Q value = 0.055
Table S335. Gene #78: '22q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
22Q LOSS MUTATED | 6 | 20 | 21 |
22Q LOSS WILD-TYPE | 140 | 151 | 153 |
Figure S335. Get High-res Image Gene #78: '22q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D78V5.png)
P value = 0.0469 (Fisher's exact test), Q value = 0.11
Table S336. Gene #78: '22q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
22Q LOSS MUTATED | 9 | 25 | 13 |
22Q LOSS WILD-TYPE | 162 | 180 | 102 |
Figure S336. Get High-res Image Gene #78: '22q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D78V6.png)
P value = 0.029 (Fisher's exact test), Q value = 0.078
Table S337. Gene #78: '22q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
22Q LOSS MUTATED | 6 | 11 | 7 | 18 | 3 |
22Q LOSS WILD-TYPE | 141 | 87 | 52 | 110 | 53 |
Figure S337. Get High-res Image Gene #78: '22q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D78V8.png)
P value = 0.00022 (Fisher's exact test), Q value = 0.0018
Table S338. Gene #78: '22q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
22Q LOSS MUTATED | 1 | 2 | 12 | 8 | 2 | 4 |
22Q LOSS WILD-TYPE | 69 | 39 | 28 | 74 | 23 | 56 |
Figure S338. Get High-res Image Gene #78: '22q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D78V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S339. Gene #79: 'xp loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
XP LOSS MUTATED | 7 | 29 | 3 |
XP LOSS WILD-TYPE | 266 | 105 | 82 |
Figure S339. Get High-res Image Gene #79: 'xp loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D79V1.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00036
Table S340. Gene #79: 'xp loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
XP LOSS MUTATED | 1 | 20 | 18 |
XP LOSS WILD-TYPE | 159 | 145 | 149 |
Figure S340. Get High-res Image Gene #79: 'xp loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D79V2.png)
P value = 0.00041 (Fisher's exact test), Q value = 0.0029
Table S341. Gene #79: 'xp loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
XP LOSS MUTATED | 2 | 17 | 20 |
XP LOSS WILD-TYPE | 144 | 154 | 154 |
Figure S341. Get High-res Image Gene #79: 'xp loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D79V5.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00055
Table S342. Gene #79: 'xp loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
XP LOSS MUTATED | 2 | 24 | 13 |
XP LOSS WILD-TYPE | 169 | 181 | 102 |
Figure S342. Get High-res Image Gene #79: 'xp loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D79V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S343. Gene #79: 'xp loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
XP LOSS MUTATED | 4 | 4 | 30 |
XP LOSS WILD-TYPE | 154 | 143 | 153 |
Figure S343. Get High-res Image Gene #79: 'xp loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D79V7.png)
P value = 0.0359 (Fisher's exact test), Q value = 0.089
Table S344. Gene #79: 'xp loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
XP LOSS MUTATED | 6 | 5 | 5 | 18 | 4 |
XP LOSS WILD-TYPE | 141 | 93 | 54 | 110 | 52 |
Figure S344. Get High-res Image Gene #79: 'xp loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D79V8.png)
P value = 0.00573 (Fisher's exact test), Q value = 0.023
Table S345. Gene #79: 'xp loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
XP LOSS MUTATED | 0 | 12 | 1 | 7 |
XP LOSS WILD-TYPE | 62 | 94 | 59 | 83 |
Figure S345. Get High-res Image Gene #79: 'xp loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D79V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S346. Gene #80: 'xq loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
XQ LOSS MUTATED | 7 | 29 | 3 |
XQ LOSS WILD-TYPE | 266 | 105 | 82 |
Figure S346. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D80V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S347. Gene #80: 'xq loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
XQ LOSS MUTATED | 1 | 20 | 18 |
XQ LOSS WILD-TYPE | 159 | 145 | 149 |
Figure S347. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D80V2.png)
P value = 4e-04 (Fisher's exact test), Q value = 0.0029
Table S348. Gene #80: 'xq loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
XQ LOSS MUTATED | 2 | 17 | 20 |
XQ LOSS WILD-TYPE | 144 | 154 | 154 |
Figure S348. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D80V5.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.001
Table S349. Gene #80: 'xq loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
XQ LOSS MUTATED | 2 | 24 | 13 |
XQ LOSS WILD-TYPE | 169 | 181 | 102 |
Figure S349. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D80V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00014
Table S350. Gene #80: 'xq loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
XQ LOSS MUTATED | 4 | 4 | 30 |
XQ LOSS WILD-TYPE | 154 | 143 | 153 |
Figure S350. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D80V7.png)
P value = 0.0346 (Fisher's exact test), Q value = 0.087
Table S351. Gene #80: 'xq loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
XQ LOSS MUTATED | 6 | 5 | 5 | 18 | 4 |
XQ LOSS WILD-TYPE | 141 | 93 | 54 | 110 | 52 |
Figure S351. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D80V8.png)
P value = 0.00592 (Fisher's exact test), Q value = 0.023
Table S352. Gene #80: 'xq loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
XQ LOSS MUTATED | 0 | 12 | 1 | 7 |
XQ LOSS WILD-TYPE | 62 | 94 | 59 | 83 |
Figure S352. Get High-res Image Gene #80: 'xq loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D80V9.png)
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Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/19782427/transformed.cor.cli.txt
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Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PRAD-TP/20168456/PRAD-TP.transferedmergedcluster.txt
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Number of patients = 492
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Number of significantly arm-level cnvs = 80
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Number of molecular subtypes = 10
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Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.