This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 65 focal events and 10 molecular subtypes across 492 patients, 442 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1q22 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_3q21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_3q26.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_4p16.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
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amp_4q13.3 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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amp_5q35.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_7p14.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_7q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_8p11.23 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_8q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_8q24.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_9q33.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_11q13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_12q23.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_13q12.11 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_14q21.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_15q11.2 cnv correlated to 'CN_CNMF'.
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amp_16q11.2 cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_17q23.2 cnv correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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amp_19q13.43 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_20q13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_xp22.11 cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_xp22.11 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_xp21.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_xq21.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_xq21.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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amp_xq25 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_xq27.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_1p31.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1q23.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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del_1q42.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_2p21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_2q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_2q22.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_3p13 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_3q29 cnv correlated to 'MRNASEQ_CNMF'.
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del_4q28.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5q13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5q21.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6p25.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6q14.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_7q31.33 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8p23.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_8p21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_9p23 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q23.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11p11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_11q22.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_12p13.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_12q24.32 cnv correlated to 'CN_CNMF'.
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del_13q14.13 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_13q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_15q21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_16q22.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_16q24.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_17p13.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_17q21.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_18q21.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_18q23 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_19q13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_21q22.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_21q22.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 65 focal events and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 442 significant findings detected.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 1q22 | 40 (8%) | 452 |
1e-05 (5e-05) |
0.036 (0.0569) |
0.0116 (0.022) |
0.0424 (0.0646) |
0.00126 (0.00324) |
0.00017 (0.000576) |
0.0116 (0.022) |
0.00036 (0.00108) |
0.0388 (0.06) |
0.0206 (0.0353) |
amp 8p11 23 | 67 (14%) | 425 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.0219 (0.0373) |
0.0112 (0.0214) |
1e-05 (5e-05) |
0.00046 (0.00134) |
0.0458 (0.0687) |
0.00123 (0.00324) |
1e-05 (5e-05) |
0.00052 (0.0015) |
amp 8q22 1 | 157 (32%) | 335 |
1e-05 (5e-05) |
1e-05 (5e-05) |
7e-05 (0.000265) |
4e-05 (0.000164) |
2e-05 (8.84e-05) |
1e-05 (5e-05) |
3e-05 (0.000127) |
1e-05 (5e-05) |
1e-05 (5e-05) |
4e-05 (0.000164) |
amp 8q24 21 | 152 (31%) | 340 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.00022 (0.000711) |
3e-05 (0.000127) |
1e-05 (5e-05) |
1e-05 (5e-05) |
2e-05 (8.84e-05) |
1e-05 (5e-05) |
3e-05 (0.000127) |
0.00039 (0.00117) |
del 6q14 3 | 180 (37%) | 312 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.015 (0.0274) |
5e-05 (0.000199) |
1e-05 (5e-05) |
1e-05 (5e-05) |
1e-05 (5e-05) |
2e-05 (8.84e-05) |
0.00214 (0.00519) |
0.00496 (0.0109) |
del 8p21 3 | 294 (60%) | 198 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.0106 (0.0206) |
0.00134 (0.0034) |
1e-05 (5e-05) |
1e-05 (5e-05) |
1e-05 (5e-05) |
2e-05 (8.84e-05) |
0.0091 (0.0181) |
3e-05 (0.000127) |
del 13q22 1 | 176 (36%) | 316 |
1e-05 (5e-05) |
5e-05 (0.000199) |
0.0224 (0.0379) |
0.0001 (0.000355) |
2e-05 (8.84e-05) |
0.00012 (0.000422) |
0.00503 (0.011) |
0.0012 (0.0032) |
0.00152 (0.00381) |
9e-05 (0.000327) |
del 15q21 3 | 67 (14%) | 425 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.0335 (0.0537) |
0.0461 (0.0688) |
1e-05 (5e-05) |
1e-05 (5e-05) |
2e-05 (8.84e-05) |
6e-05 (0.000232) |
8e-05 (0.000297) |
1e-05 (5e-05) |
del 17p13 1 | 163 (33%) | 329 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.00379 (0.00855) |
0.0281 (0.0464) |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.00014 (0.000489) |
1e-05 (5e-05) |
0.0013 (0.00331) |
1e-05 (5e-05) |
del 18q21 31 | 131 (27%) | 361 |
1e-05 (5e-05) |
0.00216 (0.0052) |
0.00623 (0.0132) |
0.0023 (0.0055) |
0.00018 (0.000603) |
0.012 (0.0227) |
0.00022 (0.000711) |
0.0186 (0.0327) |
0.00398 (0.00892) |
1e-05 (5e-05) |
amp 3q21 3 | 75 (15%) | 417 |
1e-05 (5e-05) |
0.00087 (0.00245) |
0.107 (0.141) |
0.00518 (0.0111) |
0.00033 (0.001) |
7e-05 (0.000265) |
0.0175 (0.0309) |
0.00032 (0.000977) |
0.00899 (0.018) |
0.00023 (0.000736) |
del 2q22 1 | 92 (19%) | 400 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.0577 (0.0824) |
0.0495 (0.0727) |
1e-05 (5e-05) |
1e-05 (5e-05) |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.00146 (0.00369) |
0.00097 (0.00267) |
del 5q11 2 | 100 (20%) | 392 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.00183 (0.00452) |
0.445 (0.49) |
0.00031 (0.000964) |
1e-05 (5e-05) |
0.00018 (0.000603) |
2e-05 (8.84e-05) |
0.00095 (0.00264) |
0.0002 (0.00066) |
del 5q13 2 | 99 (20%) | 393 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.0033 (0.00753) |
0.689 (0.716) |
0.00107 (0.00289) |
0.0027 (0.00627) |
0.00032 (0.000977) |
1e-05 (5e-05) |
0.00214 (0.00519) |
0.00022 (0.000711) |
del 8p23 2 | 224 (46%) | 268 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.0209 (0.0357) |
0.0714 (0.0994) |
1e-05 (5e-05) |
2e-05 (8.84e-05) |
0.00025 (0.000797) |
0.00032 (0.000977) |
0.0352 (0.056) |
0.00167 (0.00417) |
del 10q23 31 | 157 (32%) | 335 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.0358 (0.0567) |
0.219 (0.263) |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.0133 (0.0247) |
1e-05 (5e-05) |
0.04 (0.0614) |
1e-05 (5e-05) |
del 13q14 13 | 227 (46%) | 265 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.0516 (0.0756) |
0.0457 (0.0686) |
4e-05 (0.000164) |
3e-05 (0.000127) |
5e-05 (0.000199) |
0.00034 (0.00103) |
0.00012 (0.000422) |
2e-05 (8.84e-05) |
del 18q23 | 137 (28%) | 355 |
1e-05 (5e-05) |
0.0106 (0.0206) |
0.112 (0.145) |
0.0423 (0.0645) |
7e-05 (0.000265) |
0.0443 (0.0672) |
0.011 (0.0211) |
0.00725 (0.0151) |
0.00859 (0.0173) |
1e-05 (5e-05) |
amp 7p14 3 | 104 (21%) | 388 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.177 (0.216) |
0.314 (0.357) |
1e-05 (5e-05) |
6e-05 (0.000232) |
0.00403 (0.009) |
0.00044 (0.00129) |
0.00121 (0.00321) |
0.00917 (0.0182) |
amp 7q22 1 | 101 (21%) | 391 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.248 (0.293) |
0.25 (0.294) |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.00669 (0.014) |
2e-05 (8.84e-05) |
0.00052 (0.0015) |
0.00306 (0.007) |
amp 9q33 3 | 62 (13%) | 430 |
1e-05 (5e-05) |
0.02 (0.0345) |
0.256 (0.3) |
0.0709 (0.0989) |
0.00237 (0.00562) |
0.0152 (0.0275) |
0.0189 (0.0331) |
0.00101 (0.00276) |
0.0175 (0.0309) |
0.00789 (0.0161) |
amp 11q13 2 | 48 (10%) | 444 |
1e-05 (5e-05) |
0.00792 (0.0161) |
0.0887 (0.12) |
0.109 (0.143) |
0.00661 (0.0139) |
0.00044 (0.00129) |
0.0316 (0.0512) |
0.00019 (0.000633) |
0.00696 (0.0145) |
0.029 (0.0474) |
amp 20q13 2 | 45 (9%) | 447 |
1e-05 (5e-05) |
6e-05 (0.000232) |
0.711 (0.737) |
0.0273 (0.0454) |
0.00123 (0.00324) |
0.00149 (0.00375) |
0.00032 (0.000977) |
7e-05 (0.000265) |
0.159 (0.198) |
6e-05 (0.000232) |
del 1p22 1 | 58 (12%) | 434 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.536 (0.575) |
0.435 (0.479) |
0.00096 (0.00266) |
0.0002 (0.00066) |
0.00758 (0.0156) |
0.00332 (0.00755) |
0.0104 (0.0205) |
0.00752 (0.0155) |
del 2p21 | 46 (9%) | 446 |
1e-05 (5e-05) |
4e-05 (0.000164) |
0.0477 (0.0706) |
0.578 (0.614) |
0.0004 (0.00119) |
0.0203 (0.0349) |
0.00077 (0.0022) |
0.0728 (0.101) |
0.0326 (0.0523) |
0.0146 (0.0266) |
del 2q22 3 | 85 (17%) | 407 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.204 (0.247) |
0.108 (0.142) |
1e-05 (5e-05) |
1e-05 (5e-05) |
9e-05 (0.000327) |
4e-05 (0.000164) |
0.0122 (0.0229) |
0.00029 (0.000911) |
del 12p13 1 | 124 (25%) | 368 |
2e-05 (8.84e-05) |
2e-05 (8.84e-05) |
0.0501 (0.0735) |
0.0232 (0.0393) |
0.00126 (0.00324) |
0.0037 (0.00838) |
0.0623 (0.088) |
8e-05 (0.000297) |
0.0001 (0.000355) |
0.00291 (0.00668) |
del 16q22 3 | 191 (39%) | 301 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.638 (0.669) |
0.3 (0.346) |
1e-05 (5e-05) |
0.0001 (0.000355) |
4e-05 (0.000164) |
1e-05 (5e-05) |
1e-05 (5e-05) |
1e-05 (5e-05) |
del 16q24 1 | 213 (43%) | 279 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.241 (0.286) |
0.11 (0.143) |
1e-05 (5e-05) |
0.00648 (0.0136) |
0.00027 (0.000852) |
1e-05 (5e-05) |
0.00252 (0.00591) |
1e-05 (5e-05) |
del 19q13 2 | 52 (11%) | 440 |
1e-05 (5e-05) |
0.00126 (0.00324) |
0.595 (0.628) |
0.42 (0.464) |
0.00539 (0.0115) |
0.049 (0.0724) |
0.00262 (0.0061) |
0.00079 (0.00224) |
0.00223 (0.00535) |
0.00125 (0.00324) |
del 21q22 3 | 147 (30%) | 345 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.0152 (0.0275) |
0.362 (0.407) |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.0325 (0.0523) |
1e-05 (5e-05) |
0.77 (0.79) |
1e-05 (5e-05) |
amp 3q26 2 | 86 (17%) | 406 |
1e-05 (5e-05) |
0.0445 (0.0673) |
0.149 (0.186) |
0.0844 (0.114) |
0.00492 (0.0108) |
0.0146 (0.0266) |
0.0827 (0.112) |
0.00776 (0.0159) |
0.00752 (0.0155) |
2e-05 (8.84e-05) |
amp 13q12 11 | 25 (5%) | 467 |
1e-05 (5e-05) |
0.00231 (0.0055) |
0.00015 (0.000521) |
0.00116 (0.0031) |
0.00486 (0.0107) |
0.106 (0.139) |
0.0143 (0.0263) |
0.0316 (0.0512) |
0.0671 (0.0942) |
0.0724 (0.1) |
amp 19q13 43 | 19 (4%) | 473 |
1e-05 (5e-05) |
0.0374 (0.0582) |
0.397 (0.441) |
0.0666 (0.0937) |
0.00212 (0.00518) |
0.0258 (0.0431) |
0.00589 (0.0125) |
0.00128 (0.00328) |
0.152 (0.19) |
0.0114 (0.0218) |
amp xp22 11 | 25 (5%) | 467 |
2e-05 (8.84e-05) |
0.367 (0.413) |
0.581 (0.616) |
0.0133 (0.0247) |
0.0326 (0.0523) |
0.0136 (0.0253) |
0.00803 (0.0163) |
0.0103 (0.0203) |
0.0466 (0.0694) |
0.233 (0.279) |
del 1p31 3 | 60 (12%) | 432 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.535 (0.575) |
0.896 (0.9) |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.00183 (0.00452) |
0.169 (0.209) |
0.00513 (0.0111) |
0.00105 (0.00286) |
del 4q28 2 | 51 (10%) | 441 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.095 (0.127) |
0.0536 (0.0778) |
1e-05 (5e-05) |
2e-05 (8.84e-05) |
0.0904 (0.122) |
0.0156 (0.0282) |
0.00086 (0.00243) |
0.0258 (0.0431) |
del 5q21 1 | 109 (22%) | 383 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.0519 (0.0757) |
0.17 (0.209) |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.00021 (0.000689) |
0.00261 (0.0061) |
0.0994 (0.132) |
0.00449 (0.00996) |
del 7q31 33 | 28 (6%) | 464 |
9e-05 (0.000327) |
0.0151 (0.0275) |
0.103 (0.136) |
0.115 (0.149) |
0.00016 (0.000544) |
0.00031 (0.000964) |
0.00114 (0.00306) |
0.00023 (0.000736) |
0.754 (0.775) |
0.0467 (0.0694) |
del 9p23 | 45 (9%) | 447 |
1e-05 (5e-05) |
0.204 (0.247) |
0.0101 (0.0198) |
0.0053 (0.0114) |
0.00016 (0.000544) |
0.00195 (0.0048) |
0.0275 (0.0456) |
0.0799 (0.109) |
0.0731 (0.101) |
0.0164 (0.0294) |
del 11p11 2 | 34 (7%) | 458 |
1e-05 (5e-05) |
0.00248 (0.00584) |
0.0612 (0.0871) |
0.0961 (0.128) |
0.00124 (0.00324) |
0.0257 (0.0431) |
0.0289 (0.0473) |
0.0242 (0.0408) |
0.0086 (0.0173) |
0.476 (0.519) |
del 21q22 2 | 52 (11%) | 440 |
0.00042 (0.00125) |
9e-05 (0.000327) |
0.0352 (0.056) |
0.797 (0.811) |
2e-05 (8.84e-05) |
0.00026 (0.000824) |
0.163 (0.202) |
0.0391 (0.0603) |
0.836 (0.845) |
0.00289 (0.00666) |
amp 14q21 1 | 30 (6%) | 462 |
1e-05 (5e-05) |
0.0781 (0.107) |
0.337 (0.381) |
0.819 (0.831) |
0.0107 (0.0208) |
0.0363 (0.0571) |
0.00842 (0.017) |
0.0108 (0.0209) |
0.0673 (0.0942) |
0.0286 (0.0471) |
amp xp21 1 | 23 (5%) | 469 |
3e-05 (0.000127) |
0.0281 (0.0464) |
0.524 (0.565) |
0.116 (0.15) |
0.0406 (0.0623) |
0.126 (0.161) |
0.0193 (0.0338) |
0.00905 (0.018) |
0.00508 (0.011) |
0.146 (0.183) |
del 1q23 1 | 28 (6%) | 464 |
0.00513 (0.0111) |
5e-05 (0.000199) |
0.335 (0.38) |
0.745 (0.767) |
0.0001 (0.000355) |
0.0006 (0.00173) |
0.0446 (0.0673) |
0.0551 (0.0795) |
0.0195 (0.0339) |
0.191 (0.233) |
del 6p25 1 | 46 (9%) | 446 |
1e-05 (5e-05) |
0.0138 (0.0256) |
0.632 (0.664) |
0.257 (0.301) |
0.00648 (0.0136) |
0.0119 (0.0225) |
0.147 (0.185) |
0.0491 (0.0724) |
0.387 (0.432) |
0.0166 (0.0295) |
amp 5q35 3 | 28 (6%) | 464 |
1e-05 (5e-05) |
0.0144 (0.0265) |
0.0616 (0.0872) |
0.205 (0.248) |
0.0543 (0.0786) |
0.0419 (0.0642) |
0.185 (0.226) |
0.00091 (0.00254) |
0.017 (0.0303) |
0.292 (0.338) |
amp 12q23 1 | 36 (7%) | 456 |
2e-05 (8.84e-05) |
0.00208 (0.0051) |
0.0527 (0.0767) |
0.00574 (0.0122) |
0.0614 (0.0871) |
0.00044 (0.00129) |
0.65 (0.68) |
0.00216 (0.0052) |
0.289 (0.336) |
0.12 (0.154) |
amp xq21 1 | 16 (3%) | 476 |
0.00124 (0.00324) |
0.0307 (0.05) |
0.525 (0.565) |
0.0365 (0.0571) |
0.00771 (0.0158) |
0.0195 (0.0339) |
0.311 (0.355) |
0.456 (0.5) |
0.452 (0.496) |
0.397 (0.441) |
amp xq27 1 | 19 (4%) | 473 |
0.00392 (0.00882) |
0.0365 (0.0571) |
0.826 (0.836) |
0.434 (0.479) |
0.0965 (0.129) |
0.111 (0.144) |
0.001 (0.00274) |
0.00016 (0.000544) |
0.0364 (0.0571) |
0.124 (0.159) |
del 3p13 | 78 (16%) | 414 |
0.00062 (0.00178) |
1e-05 (5e-05) |
0.746 (0.767) |
0.207 (0.25) |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.292 (0.338) |
0.0657 (0.0926) |
0.0289 (0.0473) |
0.169 (0.209) |
del 17q21 31 | 96 (20%) | 396 |
1e-05 (5e-05) |
1e-05 (5e-05) |
0.506 (0.549) |
0.0347 (0.0555) |
1e-05 (5e-05) |
0.00016 (0.000544) |
0.559 (0.595) |
0.0547 (0.079) |
0.171 (0.21) |
0.31 (0.354) |
amp 4p16 3 | 20 (4%) | 472 |
1e-05 (5e-05) |
0.0106 (0.0206) |
0.373 (0.418) |
0.0208 (0.0356) |
0.0186 (0.0327) |
0.137 (0.174) |
0.406 (0.449) |
0.0733 (0.101) |
0.745 (0.767) |
0.579 (0.614) |
amp 4q13 3 | 22 (4%) | 470 |
1e-05 (5e-05) |
0.522 (0.564) |
0.0577 (0.0824) |
0.0391 (0.0603) |
0.101 (0.134) |
0.285 (0.332) |
0.0273 (0.0454) |
0.0674 (0.0942) |
0.0372 (0.058) |
0.166 (0.205) |
amp xp22 11 | 26 (5%) | 466 |
1e-05 (5e-05) |
0.141 (0.179) |
0.401 (0.445) |
0.0575 (0.0824) |
0.093 (0.125) |
0.0589 (0.0839) |
0.0161 (0.0288) |
0.00491 (0.0108) |
0.0455 (0.0684) |
0.312 (0.356) |
amp xq21 1 | 14 (3%) | 478 |
0.00247 (0.00584) |
0.0166 (0.0295) |
0.556 (0.593) |
0.011 (0.0211) |
0.208 (0.25) |
0.00411 (0.00915) |
0.0527 (0.0767) |
0.237 (0.282) |
0.302 (0.348) |
0.773 (0.791) |
del 1q42 3 | 47 (10%) | 445 |
0.00089 (0.00249) |
8e-05 (0.000297) |
0.777 (0.794) |
0.303 (0.348) |
0.351 (0.397) |
0.0757 (0.104) |
0.11 (0.143) |
0.031 (0.0504) |
0.698 (0.725) |
0.047 (0.0698) |
del 11q22 3 | 43 (9%) | 449 |
0.0436 (0.0662) |
0.02 (0.0346) |
0.0377 (0.0586) |
0.113 (0.146) |
0.356 (0.402) |
0.104 (0.137) |
0.864 (0.871) |
0.782 (0.798) |
0.161 (0.199) |
0.0121 (0.0227) |
amp 16q11 2 | 30 (6%) | 462 |
1e-05 (5e-05) |
0.14 (0.177) |
0.463 (0.507) |
0.504 (0.548) |
0.145 (0.182) |
0.0577 (0.0824) |
0.00175 (0.00436) |
0.00107 (0.00289) |
0.0832 (0.113) |
0.244 (0.289) |
amp xq25 | 19 (4%) | 473 |
0.00272 (0.00629) |
0.0196 (0.0339) |
0.723 (0.748) |
0.212 (0.255) |
0.108 (0.141) |
0.0247 (0.0417) |
0.204 (0.247) |
0.15 (0.188) |
0.732 (0.756) |
0.141 (0.179) |
amp 17q23 2 | 25 (5%) | 467 |
1e-05 (5e-05) |
0.791 (0.805) |
0.661 (0.69) |
0.292 (0.338) |
0.0748 (0.103) |
0.235 (0.28) |
0.522 (0.564) |
0.0141 (0.0261) |
0.379 (0.424) |
0.0915 (0.123) |
amp 15q11 2 | 16 (3%) | 476 |
0.01 (0.0198) |
0.506 (0.549) |
0.304 (0.349) |
0.266 (0.311) |
0.902 (0.905) |
0.522 (0.564) |
0.134 (0.17) |
0.684 (0.713) |
0.537 (0.575) |
0.154 (0.192) |
del 3q29 | 32 (7%) | 460 |
0.609 (0.642) |
0.3 (0.346) |
0.849 (0.857) |
0.662 (0.69) |
0.0365 (0.0571) |
0.0735 (0.101) |
0.309 (0.354) |
0.251 (0.296) |
0.121 (0.155) |
0.604 (0.637) |
del 12q24 32 | 43 (9%) | 449 |
6e-05 (0.000232) |
0.376 (0.421) |
0.815 (0.828) |
0.881 (0.887) |
0.234 (0.28) |
0.57 (0.606) |
0.63 (0.662) |
0.551 (0.589) |
0.395 (0.44) |
0.0719 (0.0999) |
del 11q23 2 | 48 (10%) | 444 |
0.133 (0.17) |
0.0839 (0.114) |
0.172 (0.211) |
0.102 (0.135) |
1 (1.00) |
0.924 (0.926) |
0.239 (0.284) |
0.466 (0.509) |
0.303 (0.348) |
0.257 (0.301) |
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S1. Gene #1: 'amp_1q22' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 1(1Q22) MUTATED | 11 | 28 | 1 |
AMP PEAK 1(1Q22) WILD-TYPE | 262 | 106 | 84 |
Figure S1. Get High-res Image Gene #1: 'amp_1q22' versus Molecular Subtype #1: 'CN_CNMF'
![](D1V1.png)
P value = 0.036 (Fisher's exact test), Q value = 0.057
Table S2. Gene #1: 'amp_1q22' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 1(1Q22) MUTATED | 6 | 17 | 17 |
AMP PEAK 1(1Q22) WILD-TYPE | 154 | 148 | 150 |
Figure S2. Get High-res Image Gene #1: 'amp_1q22' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D1V2.png)
P value = 0.0116 (Fisher's exact test), Q value = 0.022
Table S3. Gene #1: 'amp_1q22' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
AMP PEAK 1(1Q22) MUTATED | 6 | 3 | 22 |
AMP PEAK 1(1Q22) WILD-TYPE | 117 | 65 | 134 |
Figure S3. Get High-res Image Gene #1: 'amp_1q22' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D1V3.png)
P value = 0.0424 (Fisher's exact test), Q value = 0.065
Table S4. Gene #1: 'amp_1q22' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
AMP PEAK 1(1Q22) MUTATED | 3 | 8 | 8 | 12 |
AMP PEAK 1(1Q22) WILD-TYPE | 71 | 105 | 84 | 56 |
Figure S4. Get High-res Image Gene #1: 'amp_1q22' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D1V4.png)
P value = 0.00126 (Fisher's exact test), Q value = 0.0032
Table S5. Gene #1: 'amp_1q22' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 1(1Q22) MUTATED | 3 | 15 | 22 |
AMP PEAK 1(1Q22) WILD-TYPE | 143 | 156 | 152 |
Figure S5. Get High-res Image Gene #1: 'amp_1q22' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D1V5.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00058
Table S6. Gene #1: 'amp_1q22' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 1(1Q22) MUTATED | 3 | 25 | 12 |
AMP PEAK 1(1Q22) WILD-TYPE | 168 | 180 | 103 |
Figure S6. Get High-res Image Gene #1: 'amp_1q22' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D1V6.png)
P value = 0.0116 (Fisher's exact test), Q value = 0.022
Table S7. Gene #1: 'amp_1q22' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 1(1Q22) MUTATED | 8 | 8 | 24 |
AMP PEAK 1(1Q22) WILD-TYPE | 150 | 139 | 159 |
Figure S7. Get High-res Image Gene #1: 'amp_1q22' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D1V7.png)
P value = 0.00036 (Fisher's exact test), Q value = 0.0011
Table S8. Gene #1: 'amp_1q22' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 1(1Q22) MUTATED | 5 | 7 | 5 | 22 | 1 |
AMP PEAK 1(1Q22) WILD-TYPE | 142 | 91 | 54 | 106 | 55 |
Figure S8. Get High-res Image Gene #1: 'amp_1q22' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D1V8.png)
P value = 0.0388 (Fisher's exact test), Q value = 0.06
Table S9. Gene #1: 'amp_1q22' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 1(1Q22) MUTATED | 2 | 15 | 2 | 7 |
AMP PEAK 1(1Q22) WILD-TYPE | 60 | 91 | 58 | 83 |
Figure S9. Get High-res Image Gene #1: 'amp_1q22' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D1V9.png)
P value = 0.0206 (Fisher's exact test), Q value = 0.035
Table S10. Gene #1: 'amp_1q22' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
AMP PEAK 1(1Q22) MUTATED | 1 | 2 | 5 | 13 | 1 | 4 |
AMP PEAK 1(1Q22) WILD-TYPE | 69 | 39 | 35 | 69 | 24 | 56 |
Figure S10. Get High-res Image Gene #1: 'amp_1q22' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D1V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S11. Gene #2: 'amp_3q21.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 2(3Q21.3) MUTATED | 15 | 48 | 12 |
AMP PEAK 2(3Q21.3) WILD-TYPE | 258 | 86 | 73 |
Figure S11. Get High-res Image Gene #2: 'amp_3q21.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D2V1.png)
P value = 0.00087 (Fisher's exact test), Q value = 0.0024
Table S12. Gene #2: 'amp_3q21.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 2(3Q21.3) MUTATED | 13 | 38 | 24 |
AMP PEAK 2(3Q21.3) WILD-TYPE | 147 | 127 | 143 |
Figure S12. Get High-res Image Gene #2: 'amp_3q21.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D2V2.png)
P value = 0.00518 (Fisher's exact test), Q value = 0.011
Table S13. Gene #2: 'amp_3q21.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
AMP PEAK 2(3Q21.3) MUTATED | 5 | 22 | 8 | 16 |
AMP PEAK 2(3Q21.3) WILD-TYPE | 69 | 91 | 84 | 52 |
Figure S13. Get High-res Image Gene #2: 'amp_3q21.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D2V4.png)
P value = 0.00033 (Fisher's exact test), Q value = 0.001
Table S14. Gene #2: 'amp_3q21.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 2(3Q21.3) MUTATED | 10 | 39 | 26 |
AMP PEAK 2(3Q21.3) WILD-TYPE | 136 | 132 | 148 |
Figure S14. Get High-res Image Gene #2: 'amp_3q21.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D2V5.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00026
Table S15. Gene #2: 'amp_3q21.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 2(3Q21.3) MUTATED | 11 | 45 | 19 |
AMP PEAK 2(3Q21.3) WILD-TYPE | 160 | 160 | 96 |
Figure S15. Get High-res Image Gene #2: 'amp_3q21.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D2V6.png)
P value = 0.0175 (Fisher's exact test), Q value = 0.031
Table S16. Gene #2: 'amp_3q21.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 2(3Q21.3) MUTATED | 18 | 17 | 39 |
AMP PEAK 2(3Q21.3) WILD-TYPE | 140 | 130 | 144 |
Figure S16. Get High-res Image Gene #2: 'amp_3q21.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D2V7.png)
P value = 0.00032 (Fisher's exact test), Q value = 0.00098
Table S17. Gene #2: 'amp_3q21.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 2(3Q21.3) MUTATED | 12 | 15 | 6 | 35 | 6 |
AMP PEAK 2(3Q21.3) WILD-TYPE | 135 | 83 | 53 | 93 | 50 |
Figure S17. Get High-res Image Gene #2: 'amp_3q21.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D2V8.png)
P value = 0.00899 (Fisher's exact test), Q value = 0.018
Table S18. Gene #2: 'amp_3q21.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 2(3Q21.3) MUTATED | 2 | 22 | 10 | 12 |
AMP PEAK 2(3Q21.3) WILD-TYPE | 60 | 84 | 50 | 78 |
Figure S18. Get High-res Image Gene #2: 'amp_3q21.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D2V9.png)
P value = 0.00023 (Fisher's exact test), Q value = 0.00074
Table S19. Gene #2: 'amp_3q21.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
AMP PEAK 2(3Q21.3) MUTATED | 5 | 4 | 16 | 14 | 1 | 6 |
AMP PEAK 2(3Q21.3) WILD-TYPE | 65 | 37 | 24 | 68 | 24 | 54 |
Figure S19. Get High-res Image Gene #2: 'amp_3q21.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D2V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S20. Gene #3: 'amp_3q26.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 3(3Q26.2) MUTATED | 22 | 51 | 13 |
AMP PEAK 3(3Q26.2) WILD-TYPE | 251 | 83 | 72 |
Figure S20. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D3V1.png)
P value = 0.0445 (Fisher's exact test), Q value = 0.067
Table S21. Gene #3: 'amp_3q26.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 3(3Q26.2) MUTATED | 20 | 38 | 28 |
AMP PEAK 3(3Q26.2) WILD-TYPE | 140 | 127 | 139 |
Figure S21. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D3V2.png)
P value = 0.00492 (Fisher's exact test), Q value = 0.011
Table S22. Gene #3: 'amp_3q26.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 3(3Q26.2) MUTATED | 15 | 41 | 30 |
AMP PEAK 3(3Q26.2) WILD-TYPE | 131 | 130 | 144 |
Figure S22. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D3V5.png)
P value = 0.0146 (Fisher's exact test), Q value = 0.027
Table S23. Gene #3: 'amp_3q26.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 3(3Q26.2) MUTATED | 19 | 46 | 21 |
AMP PEAK 3(3Q26.2) WILD-TYPE | 152 | 159 | 94 |
Figure S23. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D3V6.png)
P value = 0.00776 (Fisher's exact test), Q value = 0.016
Table S24. Gene #3: 'amp_3q26.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 3(3Q26.2) MUTATED | 17 | 16 | 8 | 36 | 8 |
AMP PEAK 3(3Q26.2) WILD-TYPE | 130 | 82 | 51 | 92 | 48 |
Figure S24. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D3V8.png)
P value = 0.00752 (Fisher's exact test), Q value = 0.016
Table S25. Gene #3: 'amp_3q26.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 3(3Q26.2) MUTATED | 5 | 25 | 14 | 9 |
AMP PEAK 3(3Q26.2) WILD-TYPE | 57 | 81 | 46 | 81 |
Figure S25. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D3V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S26. Gene #3: 'amp_3q26.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
AMP PEAK 3(3Q26.2) MUTATED | 4 | 6 | 17 | 19 | 4 | 3 |
AMP PEAK 3(3Q26.2) WILD-TYPE | 66 | 35 | 23 | 63 | 21 | 57 |
Figure S26. Get High-res Image Gene #3: 'amp_3q26.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D3V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S27. Gene #4: 'amp_4p16.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 4(4P16.3) MUTATED | 2 | 17 | 1 |
AMP PEAK 4(4P16.3) WILD-TYPE | 271 | 117 | 84 |
Figure S27. Get High-res Image Gene #4: 'amp_4p16.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D4V1.png)
P value = 0.0106 (Fisher's exact test), Q value = 0.021
Table S28. Gene #4: 'amp_4p16.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 4(4P16.3) MUTATED | 1 | 11 | 8 |
AMP PEAK 4(4P16.3) WILD-TYPE | 159 | 154 | 159 |
Figure S28. Get High-res Image Gene #4: 'amp_4p16.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D4V2.png)
P value = 0.0208 (Fisher's exact test), Q value = 0.036
Table S29. Gene #4: 'amp_4p16.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
AMP PEAK 4(4P16.3) MUTATED | 3 | 1 | 3 | 7 |
AMP PEAK 4(4P16.3) WILD-TYPE | 71 | 112 | 89 | 61 |
Figure S29. Get High-res Image Gene #4: 'amp_4p16.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D4V4.png)
P value = 0.0186 (Fisher's exact test), Q value = 0.033
Table S30. Gene #4: 'amp_4p16.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 4(4P16.3) MUTATED | 1 | 11 | 8 |
AMP PEAK 4(4P16.3) WILD-TYPE | 145 | 160 | 166 |
Figure S30. Get High-res Image Gene #4: 'amp_4p16.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D4V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S31. Gene #5: 'amp_4q13.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 5(4Q13.3) MUTATED | 5 | 17 | 0 |
AMP PEAK 5(4Q13.3) WILD-TYPE | 268 | 117 | 85 |
Figure S31. Get High-res Image Gene #5: 'amp_4q13.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D5V1.png)
P value = 0.0391 (Fisher's exact test), Q value = 0.06
Table S32. Gene #5: 'amp_4q13.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
AMP PEAK 5(4Q13.3) MUTATED | 1 | 8 | 2 | 7 |
AMP PEAK 5(4Q13.3) WILD-TYPE | 73 | 105 | 90 | 61 |
Figure S32. Get High-res Image Gene #5: 'amp_4q13.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D5V4.png)
P value = 0.0273 (Fisher's exact test), Q value = 0.045
Table S33. Gene #5: 'amp_4q13.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 5(4Q13.3) MUTATED | 4 | 3 | 14 |
AMP PEAK 5(4Q13.3) WILD-TYPE | 154 | 144 | 169 |
Figure S33. Get High-res Image Gene #5: 'amp_4q13.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D5V7.png)
P value = 0.0372 (Fisher's exact test), Q value = 0.058
Table S34. Gene #5: 'amp_4q13.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 5(4Q13.3) MUTATED | 1 | 6 | 4 | 0 |
AMP PEAK 5(4Q13.3) WILD-TYPE | 61 | 100 | 56 | 90 |
Figure S34. Get High-res Image Gene #5: 'amp_4q13.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D5V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S35. Gene #6: 'amp_5q35.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 6(5Q35.3) MUTATED | 4 | 24 | 0 |
AMP PEAK 6(5Q35.3) WILD-TYPE | 269 | 110 | 85 |
Figure S35. Get High-res Image Gene #6: 'amp_5q35.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D6V1.png)
P value = 0.0144 (Fisher's exact test), Q value = 0.026
Table S36. Gene #6: 'amp_5q35.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 6(5Q35.3) MUTATED | 3 | 15 | 10 |
AMP PEAK 6(5Q35.3) WILD-TYPE | 157 | 150 | 157 |
Figure S36. Get High-res Image Gene #6: 'amp_5q35.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D6V2.png)
P value = 0.0419 (Fisher's exact test), Q value = 0.064
Table S37. Gene #6: 'amp_5q35.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 6(5Q35.3) MUTATED | 4 | 16 | 8 |
AMP PEAK 6(5Q35.3) WILD-TYPE | 167 | 189 | 107 |
Figure S37. Get High-res Image Gene #6: 'amp_5q35.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D6V6.png)
P value = 0.00091 (Fisher's exact test), Q value = 0.0025
Table S38. Gene #6: 'amp_5q35.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 6(5Q35.3) MUTATED | 6 | 6 | 0 | 16 | 0 |
AMP PEAK 6(5Q35.3) WILD-TYPE | 141 | 92 | 59 | 112 | 56 |
Figure S38. Get High-res Image Gene #6: 'amp_5q35.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D6V8.png)
P value = 0.017 (Fisher's exact test), Q value = 0.03
Table S39. Gene #6: 'amp_5q35.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 6(5Q35.3) MUTATED | 1 | 13 | 2 | 3 |
AMP PEAK 6(5Q35.3) WILD-TYPE | 61 | 93 | 58 | 87 |
Figure S39. Get High-res Image Gene #6: 'amp_5q35.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D6V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S40. Gene #7: 'amp_7p14.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 7(7P14.3) MUTATED | 13 | 69 | 22 |
AMP PEAK 7(7P14.3) WILD-TYPE | 260 | 65 | 63 |
Figure S40. Get High-res Image Gene #7: 'amp_7p14.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D7V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S41. Gene #7: 'amp_7p14.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 7(7P14.3) MUTATED | 14 | 60 | 30 |
AMP PEAK 7(7P14.3) WILD-TYPE | 146 | 105 | 137 |
Figure S41. Get High-res Image Gene #7: 'amp_7p14.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D7V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S42. Gene #7: 'amp_7p14.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 7(7P14.3) MUTATED | 11 | 64 | 29 |
AMP PEAK 7(7P14.3) WILD-TYPE | 135 | 107 | 145 |
Figure S42. Get High-res Image Gene #7: 'amp_7p14.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D7V5.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00023
Table S43. Gene #7: 'amp_7p14.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 7(7P14.3) MUTATED | 22 | 64 | 18 |
AMP PEAK 7(7P14.3) WILD-TYPE | 149 | 141 | 97 |
Figure S43. Get High-res Image Gene #7: 'amp_7p14.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D7V6.png)
P value = 0.00403 (Fisher's exact test), Q value = 0.009
Table S44. Gene #7: 'amp_7p14.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 7(7P14.3) MUTATED | 21 | 31 | 51 |
AMP PEAK 7(7P14.3) WILD-TYPE | 137 | 116 | 132 |
Figure S44. Get High-res Image Gene #7: 'amp_7p14.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D7V7.png)
P value = 0.00044 (Fisher's exact test), Q value = 0.0013
Table S45. Gene #7: 'amp_7p14.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 7(7P14.3) MUTATED | 17 | 28 | 13 | 38 | 7 |
AMP PEAK 7(7P14.3) WILD-TYPE | 130 | 70 | 46 | 90 | 49 |
Figure S45. Get High-res Image Gene #7: 'amp_7p14.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D7V8.png)
P value = 0.00121 (Fisher's exact test), Q value = 0.0032
Table S46. Gene #7: 'amp_7p14.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 7(7P14.3) MUTATED | 5 | 35 | 10 | 20 |
AMP PEAK 7(7P14.3) WILD-TYPE | 57 | 71 | 50 | 70 |
Figure S46. Get High-res Image Gene #7: 'amp_7p14.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D7V9.png)
P value = 0.00917 (Fisher's exact test), Q value = 0.018
Table S47. Gene #7: 'amp_7p14.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
AMP PEAK 7(7P14.3) MUTATED | 6 | 12 | 12 | 24 | 3 | 13 |
AMP PEAK 7(7P14.3) WILD-TYPE | 64 | 29 | 28 | 58 | 22 | 47 |
Figure S47. Get High-res Image Gene #7: 'amp_7p14.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D7V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S48. Gene #8: 'amp_7q22.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 8(7Q22.1) MUTATED | 13 | 66 | 22 |
AMP PEAK 8(7Q22.1) WILD-TYPE | 260 | 68 | 63 |
Figure S48. Get High-res Image Gene #8: 'amp_7q22.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D8V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S49. Gene #8: 'amp_7q22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 8(7Q22.1) MUTATED | 15 | 59 | 27 |
AMP PEAK 8(7Q22.1) WILD-TYPE | 145 | 106 | 140 |
Figure S49. Get High-res Image Gene #8: 'amp_7q22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D8V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S50. Gene #8: 'amp_7q22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 8(7Q22.1) MUTATED | 11 | 64 | 26 |
AMP PEAK 8(7Q22.1) WILD-TYPE | 135 | 107 | 148 |
Figure S50. Get High-res Image Gene #8: 'amp_7q22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D8V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S51. Gene #8: 'amp_7q22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 8(7Q22.1) MUTATED | 22 | 64 | 15 |
AMP PEAK 8(7Q22.1) WILD-TYPE | 149 | 141 | 100 |
Figure S51. Get High-res Image Gene #8: 'amp_7q22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D8V6.png)
P value = 0.00669 (Fisher's exact test), Q value = 0.014
Table S52. Gene #8: 'amp_7q22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 8(7Q22.1) MUTATED | 20 | 32 | 48 |
AMP PEAK 8(7Q22.1) WILD-TYPE | 138 | 115 | 135 |
Figure S52. Get High-res Image Gene #8: 'amp_7q22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D8V7.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S53. Gene #8: 'amp_7q22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 8(7Q22.1) MUTATED | 13 | 30 | 16 | 36 | 5 |
AMP PEAK 8(7Q22.1) WILD-TYPE | 134 | 68 | 43 | 92 | 51 |
Figure S53. Get High-res Image Gene #8: 'amp_7q22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D8V8.png)
P value = 0.00052 (Fisher's exact test), Q value = 0.0015
Table S54. Gene #8: 'amp_7q22.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 8(7Q22.1) MUTATED | 4 | 35 | 12 | 18 |
AMP PEAK 8(7Q22.1) WILD-TYPE | 58 | 71 | 48 | 72 |
Figure S54. Get High-res Image Gene #8: 'amp_7q22.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D8V9.png)
P value = 0.00306 (Fisher's exact test), Q value = 0.007
Table S55. Gene #8: 'amp_7q22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
AMP PEAK 8(7Q22.1) MUTATED | 6 | 12 | 12 | 25 | 2 | 12 |
AMP PEAK 8(7Q22.1) WILD-TYPE | 64 | 29 | 28 | 57 | 23 | 48 |
Figure S55. Get High-res Image Gene #8: 'amp_7q22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D8V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S56. Gene #9: 'amp_8p11.23' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 9(8P11.23) MUTATED | 9 | 49 | 9 |
AMP PEAK 9(8P11.23) WILD-TYPE | 264 | 85 | 76 |
Figure S56. Get High-res Image Gene #9: 'amp_8p11.23' versus Molecular Subtype #1: 'CN_CNMF'
![](D9V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S57. Gene #9: 'amp_8p11.23' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 9(8P11.23) MUTATED | 8 | 45 | 14 |
AMP PEAK 9(8P11.23) WILD-TYPE | 152 | 120 | 153 |
Figure S57. Get High-res Image Gene #9: 'amp_8p11.23' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D9V2.png)
P value = 0.0219 (Fisher's exact test), Q value = 0.037
Table S58. Gene #9: 'amp_8p11.23' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
AMP PEAK 9(8P11.23) MUTATED | 15 | 4 | 30 |
AMP PEAK 9(8P11.23) WILD-TYPE | 108 | 64 | 126 |
Figure S58. Get High-res Image Gene #9: 'amp_8p11.23' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D9V3.png)
P value = 0.0112 (Fisher's exact test), Q value = 0.021
Table S59. Gene #9: 'amp_8p11.23' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
AMP PEAK 9(8P11.23) MUTATED | 9 | 15 | 7 | 18 |
AMP PEAK 9(8P11.23) WILD-TYPE | 65 | 98 | 85 | 50 |
Figure S59. Get High-res Image Gene #9: 'amp_8p11.23' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D9V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S60. Gene #9: 'amp_8p11.23' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 9(8P11.23) MUTATED | 10 | 43 | 14 |
AMP PEAK 9(8P11.23) WILD-TYPE | 136 | 128 | 160 |
Figure S60. Get High-res Image Gene #9: 'amp_8p11.23' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D9V5.png)
P value = 0.00046 (Fisher's exact test), Q value = 0.0013
Table S61. Gene #9: 'amp_8p11.23' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 9(8P11.23) MUTATED | 13 | 43 | 11 |
AMP PEAK 9(8P11.23) WILD-TYPE | 158 | 162 | 104 |
Figure S61. Get High-res Image Gene #9: 'amp_8p11.23' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D9V6.png)
P value = 0.0458 (Fisher's exact test), Q value = 0.069
Table S62. Gene #9: 'amp_8p11.23' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 9(8P11.23) MUTATED | 14 | 19 | 33 |
AMP PEAK 9(8P11.23) WILD-TYPE | 144 | 128 | 150 |
Figure S62. Get High-res Image Gene #9: 'amp_8p11.23' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D9V7.png)
P value = 0.00123 (Fisher's exact test), Q value = 0.0032
Table S63. Gene #9: 'amp_8p11.23' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 9(8P11.23) MUTATED | 10 | 12 | 6 | 31 | 7 |
AMP PEAK 9(8P11.23) WILD-TYPE | 137 | 86 | 53 | 97 | 49 |
Figure S63. Get High-res Image Gene #9: 'amp_8p11.23' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D9V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S64. Gene #9: 'amp_8p11.23' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 9(8P11.23) MUTATED | 2 | 31 | 4 | 8 |
AMP PEAK 9(8P11.23) WILD-TYPE | 60 | 75 | 56 | 82 |
Figure S64. Get High-res Image Gene #9: 'amp_8p11.23' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D9V9.png)
P value = 0.00052 (Fisher's exact test), Q value = 0.0015
Table S65. Gene #9: 'amp_8p11.23' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
AMP PEAK 9(8P11.23) MUTATED | 5 | 5 | 4 | 25 | 1 | 5 |
AMP PEAK 9(8P11.23) WILD-TYPE | 65 | 36 | 36 | 57 | 24 | 55 |
Figure S65. Get High-res Image Gene #9: 'amp_8p11.23' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D9V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S66. Gene #10: 'amp_8q22.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 10(8Q22.1) MUTATED | 45 | 100 | 12 |
AMP PEAK 10(8Q22.1) WILD-TYPE | 228 | 34 | 73 |
Figure S66. Get High-res Image Gene #10: 'amp_8q22.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D10V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S67. Gene #10: 'amp_8q22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 10(8Q22.1) MUTATED | 25 | 83 | 49 |
AMP PEAK 10(8Q22.1) WILD-TYPE | 135 | 82 | 118 |
Figure S67. Get High-res Image Gene #10: 'amp_8q22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D10V2.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00026
Table S68. Gene #10: 'amp_8q22.1' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
AMP PEAK 10(8Q22.1) MUTATED | 28 | 15 | 70 |
AMP PEAK 10(8Q22.1) WILD-TYPE | 95 | 53 | 86 |
Figure S68. Get High-res Image Gene #10: 'amp_8q22.1' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D10V3.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00016
Table S69. Gene #10: 'amp_8q22.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
AMP PEAK 10(8Q22.1) MUTATED | 14 | 33 | 27 | 39 |
AMP PEAK 10(8Q22.1) WILD-TYPE | 60 | 80 | 65 | 29 |
Figure S69. Get High-res Image Gene #10: 'amp_8q22.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D10V4.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S70. Gene #10: 'amp_8q22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 10(8Q22.1) MUTATED | 27 | 74 | 56 |
AMP PEAK 10(8Q22.1) WILD-TYPE | 119 | 97 | 118 |
Figure S70. Get High-res Image Gene #10: 'amp_8q22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D10V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S71. Gene #10: 'amp_8q22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 10(8Q22.1) MUTATED | 31 | 90 | 36 |
AMP PEAK 10(8Q22.1) WILD-TYPE | 140 | 115 | 79 |
Figure S71. Get High-res Image Gene #10: 'amp_8q22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D10V6.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00013
Table S72. Gene #10: 'amp_8q22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 10(8Q22.1) MUTATED | 38 | 36 | 81 |
AMP PEAK 10(8Q22.1) WILD-TYPE | 120 | 111 | 102 |
Figure S72. Get High-res Image Gene #10: 'amp_8q22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D10V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S73. Gene #10: 'amp_8q22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 10(8Q22.1) MUTATED | 25 | 29 | 24 | 65 | 12 |
AMP PEAK 10(8Q22.1) WILD-TYPE | 122 | 69 | 35 | 63 | 44 |
Figure S73. Get High-res Image Gene #10: 'amp_8q22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D10V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S74. Gene #10: 'amp_8q22.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 10(8Q22.1) MUTATED | 10 | 56 | 12 | 23 |
AMP PEAK 10(8Q22.1) WILD-TYPE | 52 | 50 | 48 | 67 |
Figure S74. Get High-res Image Gene #10: 'amp_8q22.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D10V9.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00016
Table S75. Gene #10: 'amp_8q22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
AMP PEAK 10(8Q22.1) MUTATED | 12 | 9 | 16 | 43 | 6 | 15 |
AMP PEAK 10(8Q22.1) WILD-TYPE | 58 | 32 | 24 | 39 | 19 | 45 |
Figure S75. Get High-res Image Gene #10: 'amp_8q22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D10V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S76. Gene #11: 'amp_8q24.21' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 11(8Q24.21) MUTATED | 43 | 98 | 11 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 230 | 36 | 74 |
Figure S76. Get High-res Image Gene #11: 'amp_8q24.21' versus Molecular Subtype #1: 'CN_CNMF'
![](D11V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S77. Gene #11: 'amp_8q24.21' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 11(8Q24.21) MUTATED | 25 | 80 | 47 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 135 | 85 | 120 |
Figure S77. Get High-res Image Gene #11: 'amp_8q24.21' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D11V2.png)
P value = 0.00022 (Fisher's exact test), Q value = 0.00071
Table S78. Gene #11: 'amp_8q24.21' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
AMP PEAK 11(8Q24.21) MUTATED | 26 | 15 | 66 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 97 | 53 | 90 |
Figure S78. Get High-res Image Gene #11: 'amp_8q24.21' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D11V3.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00013
Table S79. Gene #11: 'amp_8q24.21' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
AMP PEAK 11(8Q24.21) MUTATED | 14 | 30 | 26 | 37 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 60 | 83 | 66 | 31 |
Figure S79. Get High-res Image Gene #11: 'amp_8q24.21' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D11V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S80. Gene #11: 'amp_8q24.21' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 11(8Q24.21) MUTATED | 24 | 76 | 52 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 122 | 95 | 122 |
Figure S80. Get High-res Image Gene #11: 'amp_8q24.21' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D11V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S81. Gene #11: 'amp_8q24.21' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 11(8Q24.21) MUTATED | 29 | 90 | 33 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 142 | 115 | 82 |
Figure S81. Get High-res Image Gene #11: 'amp_8q24.21' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D11V6.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S82. Gene #11: 'amp_8q24.21' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 11(8Q24.21) MUTATED | 33 | 35 | 82 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 125 | 112 | 101 |
Figure S82. Get High-res Image Gene #11: 'amp_8q24.21' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D11V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S83. Gene #11: 'amp_8q24.21' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 11(8Q24.21) MUTATED | 21 | 29 | 23 | 65 | 12 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 126 | 69 | 36 | 63 | 44 |
Figure S83. Get High-res Image Gene #11: 'amp_8q24.21' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D11V8.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00013
Table S84. Gene #11: 'amp_8q24.21' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 11(8Q24.21) MUTATED | 10 | 53 | 14 | 21 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 52 | 53 | 46 | 69 |
Figure S84. Get High-res Image Gene #11: 'amp_8q24.21' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D11V9.png)
P value = 0.00039 (Fisher's exact test), Q value = 0.0012
Table S85. Gene #11: 'amp_8q24.21' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
AMP PEAK 11(8Q24.21) MUTATED | 13 | 9 | 15 | 41 | 6 | 14 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 57 | 32 | 25 | 41 | 19 | 46 |
Figure S85. Get High-res Image Gene #11: 'amp_8q24.21' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D11V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S86. Gene #12: 'amp_9q33.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 12(9Q33.3) MUTATED | 9 | 53 | 0 |
AMP PEAK 12(9Q33.3) WILD-TYPE | 264 | 81 | 85 |
Figure S86. Get High-res Image Gene #12: 'amp_9q33.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D12V1.png)
P value = 0.02 (Fisher's exact test), Q value = 0.035
Table S87. Gene #12: 'amp_9q33.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 12(9Q33.3) MUTATED | 11 | 24 | 27 |
AMP PEAK 12(9Q33.3) WILD-TYPE | 149 | 141 | 140 |
Figure S87. Get High-res Image Gene #12: 'amp_9q33.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D12V2.png)
P value = 0.00237 (Fisher's exact test), Q value = 0.0056
Table S88. Gene #12: 'amp_9q33.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 12(9Q33.3) MUTATED | 8 | 23 | 31 |
AMP PEAK 12(9Q33.3) WILD-TYPE | 138 | 148 | 143 |
Figure S88. Get High-res Image Gene #12: 'amp_9q33.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D12V5.png)
P value = 0.0152 (Fisher's exact test), Q value = 0.028
Table S89. Gene #12: 'amp_9q33.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 12(9Q33.3) MUTATED | 12 | 34 | 16 |
AMP PEAK 12(9Q33.3) WILD-TYPE | 159 | 171 | 99 |
Figure S89. Get High-res Image Gene #12: 'amp_9q33.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D12V6.png)
P value = 0.0189 (Fisher's exact test), Q value = 0.033
Table S90. Gene #12: 'amp_9q33.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 12(9Q33.3) MUTATED | 14 | 14 | 33 |
AMP PEAK 12(9Q33.3) WILD-TYPE | 144 | 133 | 150 |
Figure S90. Get High-res Image Gene #12: 'amp_9q33.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D12V7.png)
P value = 0.00101 (Fisher's exact test), Q value = 0.0028
Table S91. Gene #12: 'amp_9q33.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 12(9Q33.3) MUTATED | 10 | 10 | 7 | 30 | 4 |
AMP PEAK 12(9Q33.3) WILD-TYPE | 137 | 88 | 52 | 98 | 52 |
Figure S91. Get High-res Image Gene #12: 'amp_9q33.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D12V8.png)
P value = 0.0175 (Fisher's exact test), Q value = 0.031
Table S92. Gene #12: 'amp_9q33.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 12(9Q33.3) MUTATED | 2 | 19 | 4 | 9 |
AMP PEAK 12(9Q33.3) WILD-TYPE | 60 | 87 | 56 | 81 |
Figure S92. Get High-res Image Gene #12: 'amp_9q33.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D12V9.png)
P value = 0.00789 (Fisher's exact test), Q value = 0.016
Table S93. Gene #12: 'amp_9q33.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
AMP PEAK 12(9Q33.3) MUTATED | 3 | 2 | 10 | 13 | 1 | 5 |
AMP PEAK 12(9Q33.3) WILD-TYPE | 67 | 39 | 30 | 69 | 24 | 55 |
Figure S93. Get High-res Image Gene #12: 'amp_9q33.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D12V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S94. Gene #13: 'amp_11q13.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 13(11Q13.2) MUTATED | 7 | 39 | 2 |
AMP PEAK 13(11Q13.2) WILD-TYPE | 266 | 95 | 83 |
Figure S94. Get High-res Image Gene #13: 'amp_11q13.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D13V1.png)
P value = 0.00792 (Fisher's exact test), Q value = 0.016
Table S95. Gene #13: 'amp_11q13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 13(11Q13.2) MUTATED | 8 | 25 | 15 |
AMP PEAK 13(11Q13.2) WILD-TYPE | 152 | 140 | 152 |
Figure S95. Get High-res Image Gene #13: 'amp_11q13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D13V2.png)
P value = 0.00661 (Fisher's exact test), Q value = 0.014
Table S96. Gene #13: 'amp_11q13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 13(11Q13.2) MUTATED | 7 | 26 | 15 |
AMP PEAK 13(11Q13.2) WILD-TYPE | 139 | 145 | 159 |
Figure S96. Get High-res Image Gene #13: 'amp_11q13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D13V5.png)
P value = 0.00044 (Fisher's exact test), Q value = 0.0013
Table S97. Gene #13: 'amp_11q13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 13(11Q13.2) MUTATED | 8 | 33 | 7 |
AMP PEAK 13(11Q13.2) WILD-TYPE | 163 | 172 | 108 |
Figure S97. Get High-res Image Gene #13: 'amp_11q13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D13V6.png)
P value = 0.0316 (Fisher's exact test), Q value = 0.051
Table S98. Gene #13: 'amp_11q13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 13(11Q13.2) MUTATED | 10 | 11 | 26 |
AMP PEAK 13(11Q13.2) WILD-TYPE | 148 | 136 | 157 |
Figure S98. Get High-res Image Gene #13: 'amp_11q13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D13V7.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.00063
Table S99. Gene #13: 'amp_11q13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 13(11Q13.2) MUTATED | 6 | 11 | 5 | 24 | 1 |
AMP PEAK 13(11Q13.2) WILD-TYPE | 141 | 87 | 54 | 104 | 55 |
Figure S99. Get High-res Image Gene #13: 'amp_11q13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D13V8.png)
P value = 0.00696 (Fisher's exact test), Q value = 0.014
Table S100. Gene #13: 'amp_11q13.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 13(11Q13.2) MUTATED | 1 | 17 | 6 | 5 |
AMP PEAK 13(11Q13.2) WILD-TYPE | 61 | 89 | 54 | 85 |
Figure S100. Get High-res Image Gene #13: 'amp_11q13.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D13V9.png)
P value = 0.029 (Fisher's exact test), Q value = 0.047
Table S101. Gene #13: 'amp_11q13.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
AMP PEAK 13(11Q13.2) MUTATED | 3 | 2 | 8 | 11 | 0 | 5 |
AMP PEAK 13(11Q13.2) WILD-TYPE | 67 | 39 | 32 | 71 | 25 | 55 |
Figure S101. Get High-res Image Gene #13: 'amp_11q13.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D13V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S102. Gene #14: 'amp_12q23.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 14(12Q23.1) MUTATED | 12 | 23 | 1 |
AMP PEAK 14(12Q23.1) WILD-TYPE | 261 | 111 | 84 |
Figure S102. Get High-res Image Gene #14: 'amp_12q23.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D14V1.png)
P value = 0.00208 (Fisher's exact test), Q value = 0.0051
Table S103. Gene #14: 'amp_12q23.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 14(12Q23.1) MUTATED | 8 | 22 | 6 |
AMP PEAK 14(12Q23.1) WILD-TYPE | 152 | 143 | 161 |
Figure S103. Get High-res Image Gene #14: 'amp_12q23.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D14V2.png)
P value = 0.00574 (Fisher's exact test), Q value = 0.012
Table S104. Gene #14: 'amp_12q23.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
AMP PEAK 14(12Q23.1) MUTATED | 2 | 8 | 6 | 13 |
AMP PEAK 14(12Q23.1) WILD-TYPE | 72 | 105 | 86 | 55 |
Figure S104. Get High-res Image Gene #14: 'amp_12q23.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D14V4.png)
P value = 0.00044 (Fisher's exact test), Q value = 0.0013
Table S105. Gene #14: 'amp_12q23.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 14(12Q23.1) MUTATED | 8 | 26 | 2 |
AMP PEAK 14(12Q23.1) WILD-TYPE | 163 | 179 | 113 |
Figure S105. Get High-res Image Gene #14: 'amp_12q23.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D14V6.png)
P value = 0.00216 (Fisher's exact test), Q value = 0.0052
Table S106. Gene #14: 'amp_12q23.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 14(12Q23.1) MUTATED | 7 | 6 | 3 | 19 | 0 |
AMP PEAK 14(12Q23.1) WILD-TYPE | 140 | 92 | 56 | 109 | 56 |
Figure S106. Get High-res Image Gene #14: 'amp_12q23.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D14V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S107. Gene #15: 'amp_13q12.11' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 15(13Q12.11) MUTATED | 4 | 20 | 1 |
AMP PEAK 15(13Q12.11) WILD-TYPE | 269 | 114 | 84 |
Figure S107. Get High-res Image Gene #15: 'amp_13q12.11' versus Molecular Subtype #1: 'CN_CNMF'
![](D15V1.png)
P value = 0.00231 (Fisher's exact test), Q value = 0.0055
Table S108. Gene #15: 'amp_13q12.11' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 15(13Q12.11) MUTATED | 1 | 11 | 13 |
AMP PEAK 15(13Q12.11) WILD-TYPE | 159 | 154 | 154 |
Figure S108. Get High-res Image Gene #15: 'amp_13q12.11' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D15V2.png)
P value = 0.00015 (Fisher's exact test), Q value = 0.00052
Table S109. Gene #15: 'amp_13q12.11' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
AMP PEAK 15(13Q12.11) MUTATED | 2 | 0 | 17 |
AMP PEAK 15(13Q12.11) WILD-TYPE | 121 | 68 | 139 |
Figure S109. Get High-res Image Gene #15: 'amp_13q12.11' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D15V3.png)
P value = 0.00116 (Fisher's exact test), Q value = 0.0031
Table S110. Gene #15: 'amp_13q12.11' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
AMP PEAK 15(13Q12.11) MUTATED | 3 | 3 | 2 | 11 |
AMP PEAK 15(13Q12.11) WILD-TYPE | 71 | 110 | 90 | 57 |
Figure S110. Get High-res Image Gene #15: 'amp_13q12.11' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D15V4.png)
P value = 0.00486 (Fisher's exact test), Q value = 0.011
Table S111. Gene #15: 'amp_13q12.11' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 15(13Q12.11) MUTATED | 1 | 13 | 11 |
AMP PEAK 15(13Q12.11) WILD-TYPE | 145 | 158 | 163 |
Figure S111. Get High-res Image Gene #15: 'amp_13q12.11' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D15V5.png)
P value = 0.0143 (Fisher's exact test), Q value = 0.026
Table S112. Gene #15: 'amp_13q12.11' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 15(13Q12.11) MUTATED | 4 | 4 | 16 |
AMP PEAK 15(13Q12.11) WILD-TYPE | 154 | 143 | 167 |
Figure S112. Get High-res Image Gene #15: 'amp_13q12.11' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D15V7.png)
P value = 0.0316 (Fisher's exact test), Q value = 0.051
Table S113. Gene #15: 'amp_13q12.11' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 15(13Q12.11) MUTATED | 2 | 4 | 5 | 11 | 2 |
AMP PEAK 15(13Q12.11) WILD-TYPE | 145 | 94 | 54 | 117 | 54 |
Figure S113. Get High-res Image Gene #15: 'amp_13q12.11' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D15V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S114. Gene #16: 'amp_14q21.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 16(14Q21.1) MUTATED | 1 | 25 | 4 |
AMP PEAK 16(14Q21.1) WILD-TYPE | 272 | 109 | 81 |
Figure S114. Get High-res Image Gene #16: 'amp_14q21.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D16V1.png)
P value = 0.0107 (Fisher's exact test), Q value = 0.021
Table S115. Gene #16: 'amp_14q21.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 16(14Q21.1) MUTATED | 3 | 17 | 10 |
AMP PEAK 16(14Q21.1) WILD-TYPE | 143 | 154 | 164 |
Figure S115. Get High-res Image Gene #16: 'amp_14q21.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D16V5.png)
P value = 0.0363 (Fisher's exact test), Q value = 0.057
Table S116. Gene #16: 'amp_14q21.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 16(14Q21.1) MUTATED | 5 | 19 | 6 |
AMP PEAK 16(14Q21.1) WILD-TYPE | 166 | 186 | 109 |
Figure S116. Get High-res Image Gene #16: 'amp_14q21.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D16V6.png)
P value = 0.00842 (Fisher's exact test), Q value = 0.017
Table S117. Gene #16: 'amp_14q21.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 16(14Q21.1) MUTATED | 4 | 7 | 19 |
AMP PEAK 16(14Q21.1) WILD-TYPE | 154 | 140 | 164 |
Figure S117. Get High-res Image Gene #16: 'amp_14q21.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D16V7.png)
P value = 0.0108 (Fisher's exact test), Q value = 0.021
Table S118. Gene #16: 'amp_14q21.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 16(14Q21.1) MUTATED | 3 | 5 | 3 | 16 | 3 |
AMP PEAK 16(14Q21.1) WILD-TYPE | 144 | 93 | 56 | 112 | 53 |
Figure S118. Get High-res Image Gene #16: 'amp_14q21.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D16V8.png)
P value = 0.0286 (Fisher's exact test), Q value = 0.047
Table S119. Gene #16: 'amp_14q21.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
AMP PEAK 16(14Q21.1) MUTATED | 1 | 2 | 7 | 9 | 1 | 3 |
AMP PEAK 16(14Q21.1) WILD-TYPE | 69 | 39 | 33 | 73 | 24 | 57 |
Figure S119. Get High-res Image Gene #16: 'amp_14q21.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D16V10.png)
P value = 0.01 (Fisher's exact test), Q value = 0.02
Table S120. Gene #17: 'amp_15q11.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 17(15Q11.2) MUTATED | 5 | 10 | 1 |
AMP PEAK 17(15Q11.2) WILD-TYPE | 268 | 124 | 84 |
Figure S120. Get High-res Image Gene #17: 'amp_15q11.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D17V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S121. Gene #18: 'amp_16q11.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 18(16Q11.2) MUTATED | 8 | 21 | 1 |
AMP PEAK 18(16Q11.2) WILD-TYPE | 265 | 113 | 84 |
Figure S121. Get High-res Image Gene #18: 'amp_16q11.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D18V1.png)
P value = 0.00175 (Fisher's exact test), Q value = 0.0044
Table S122. Gene #18: 'amp_16q11.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 18(16Q11.2) MUTATED | 2 | 9 | 18 |
AMP PEAK 18(16Q11.2) WILD-TYPE | 156 | 138 | 165 |
Figure S122. Get High-res Image Gene #18: 'amp_16q11.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D18V7.png)
P value = 0.00107 (Fisher's exact test), Q value = 0.0029
Table S123. Gene #18: 'amp_16q11.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 18(16Q11.2) MUTATED | 1 | 5 | 4 | 15 | 4 |
AMP PEAK 18(16Q11.2) WILD-TYPE | 146 | 93 | 55 | 113 | 52 |
Figure S123. Get High-res Image Gene #18: 'amp_16q11.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D18V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S124. Gene #19: 'amp_17q23.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 19(17Q23.2) MUTATED | 6 | 19 | 0 |
AMP PEAK 19(17Q23.2) WILD-TYPE | 267 | 115 | 85 |
Figure S124. Get High-res Image Gene #19: 'amp_17q23.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D19V1.png)
P value = 0.0141 (Fisher's exact test), Q value = 0.026
Table S125. Gene #19: 'amp_17q23.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 19(17Q23.2) MUTATED | 4 | 4 | 7 | 10 | 0 |
AMP PEAK 19(17Q23.2) WILD-TYPE | 143 | 94 | 52 | 118 | 56 |
Figure S125. Get High-res Image Gene #19: 'amp_17q23.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D19V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S126. Gene #20: 'amp_19q13.43' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 20(19Q13.43) MUTATED | 0 | 19 | 0 |
AMP PEAK 20(19Q13.43) WILD-TYPE | 273 | 115 | 85 |
Figure S126. Get High-res Image Gene #20: 'amp_19q13.43' versus Molecular Subtype #1: 'CN_CNMF'
![](D20V1.png)
P value = 0.0374 (Fisher's exact test), Q value = 0.058
Table S127. Gene #20: 'amp_19q13.43' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 20(19Q13.43) MUTATED | 2 | 11 | 6 |
AMP PEAK 20(19Q13.43) WILD-TYPE | 158 | 154 | 161 |
Figure S127. Get High-res Image Gene #20: 'amp_19q13.43' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D20V2.png)
P value = 0.00212 (Fisher's exact test), Q value = 0.0052
Table S128. Gene #20: 'amp_19q13.43' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 20(19Q13.43) MUTATED | 0 | 11 | 8 |
AMP PEAK 20(19Q13.43) WILD-TYPE | 146 | 160 | 166 |
Figure S128. Get High-res Image Gene #20: 'amp_19q13.43' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D20V5.png)
P value = 0.0258 (Fisher's exact test), Q value = 0.043
Table S129. Gene #20: 'amp_19q13.43' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 20(19Q13.43) MUTATED | 2 | 13 | 4 |
AMP PEAK 20(19Q13.43) WILD-TYPE | 169 | 192 | 111 |
Figure S129. Get High-res Image Gene #20: 'amp_19q13.43' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D20V6.png)
P value = 0.00589 (Fisher's exact test), Q value = 0.013
Table S130. Gene #20: 'amp_19q13.43' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 20(19Q13.43) MUTATED | 1 | 5 | 13 |
AMP PEAK 20(19Q13.43) WILD-TYPE | 157 | 142 | 170 |
Figure S130. Get High-res Image Gene #20: 'amp_19q13.43' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D20V7.png)
P value = 0.00128 (Fisher's exact test), Q value = 0.0033
Table S131. Gene #20: 'amp_19q13.43' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 20(19Q13.43) MUTATED | 0 | 5 | 1 | 11 | 2 |
AMP PEAK 20(19Q13.43) WILD-TYPE | 147 | 93 | 58 | 117 | 54 |
Figure S131. Get High-res Image Gene #20: 'amp_19q13.43' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D20V8.png)
P value = 0.0114 (Fisher's exact test), Q value = 0.022
Table S132. Gene #20: 'amp_19q13.43' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
AMP PEAK 20(19Q13.43) MUTATED | 0 | 0 | 5 | 5 | 0 | 2 |
AMP PEAK 20(19Q13.43) WILD-TYPE | 70 | 41 | 35 | 77 | 25 | 58 |
Figure S132. Get High-res Image Gene #20: 'amp_19q13.43' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D20V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S133. Gene #21: 'amp_20q13.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 21(20Q13.2) MUTATED | 5 | 37 | 3 |
AMP PEAK 21(20Q13.2) WILD-TYPE | 268 | 97 | 82 |
Figure S133. Get High-res Image Gene #21: 'amp_20q13.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D21V1.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00023
Table S134. Gene #21: 'amp_20q13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 21(20Q13.2) MUTATED | 5 | 28 | 12 |
AMP PEAK 21(20Q13.2) WILD-TYPE | 155 | 137 | 155 |
Figure S134. Get High-res Image Gene #21: 'amp_20q13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D21V2.png)
P value = 0.0273 (Fisher's exact test), Q value = 0.045
Table S135. Gene #21: 'amp_20q13.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
AMP PEAK 21(20Q13.2) MUTATED | 4 | 11 | 4 | 12 |
AMP PEAK 21(20Q13.2) WILD-TYPE | 70 | 102 | 88 | 56 |
Figure S135. Get High-res Image Gene #21: 'amp_20q13.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D21V4.png)
P value = 0.00123 (Fisher's exact test), Q value = 0.0032
Table S136. Gene #21: 'amp_20q13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 21(20Q13.2) MUTATED | 4 | 23 | 18 |
AMP PEAK 21(20Q13.2) WILD-TYPE | 142 | 148 | 156 |
Figure S136. Get High-res Image Gene #21: 'amp_20q13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D21V5.png)
P value = 0.00149 (Fisher's exact test), Q value = 0.0038
Table S137. Gene #21: 'amp_20q13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 21(20Q13.2) MUTATED | 7 | 30 | 8 |
AMP PEAK 21(20Q13.2) WILD-TYPE | 164 | 175 | 107 |
Figure S137. Get High-res Image Gene #21: 'amp_20q13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D21V6.png)
P value = 0.00032 (Fisher's exact test), Q value = 0.00098
Table S138. Gene #21: 'amp_20q13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 21(20Q13.2) MUTATED | 5 | 12 | 28 |
AMP PEAK 21(20Q13.2) WILD-TYPE | 153 | 135 | 155 |
Figure S138. Get High-res Image Gene #21: 'amp_20q13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D21V7.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00026
Table S139. Gene #21: 'amp_20q13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 21(20Q13.2) MUTATED | 5 | 13 | 1 | 23 | 3 |
AMP PEAK 21(20Q13.2) WILD-TYPE | 142 | 85 | 58 | 105 | 53 |
Figure S139. Get High-res Image Gene #21: 'amp_20q13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D21V8.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00023
Table S140. Gene #21: 'amp_20q13.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
AMP PEAK 21(20Q13.2) MUTATED | 1 | 1 | 12 | 5 | 2 | 6 |
AMP PEAK 21(20Q13.2) WILD-TYPE | 69 | 40 | 28 | 77 | 23 | 54 |
Figure S140. Get High-res Image Gene #21: 'amp_20q13.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D21V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S141. Gene #22: 'amp_xp22.11' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 22(XP22.11) MUTATED | 5 | 19 | 2 |
AMP PEAK 22(XP22.11) WILD-TYPE | 268 | 115 | 83 |
Figure S141. Get High-res Image Gene #22: 'amp_xp22.11' versus Molecular Subtype #1: 'CN_CNMF'
![](D22V1.png)
P value = 0.0161 (Fisher's exact test), Q value = 0.029
Table S142. Gene #22: 'amp_xp22.11' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 22(XP22.11) MUTATED | 5 | 4 | 17 |
AMP PEAK 22(XP22.11) WILD-TYPE | 153 | 143 | 166 |
Figure S142. Get High-res Image Gene #22: 'amp_xp22.11' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D22V7.png)
P value = 0.00491 (Fisher's exact test), Q value = 0.011
Table S143. Gene #22: 'amp_xp22.11' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 22(XP22.11) MUTATED | 1 | 6 | 3 | 13 | 3 |
AMP PEAK 22(XP22.11) WILD-TYPE | 146 | 92 | 56 | 115 | 53 |
Figure S143. Get High-res Image Gene #22: 'amp_xp22.11' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D22V8.png)
P value = 0.0455 (Fisher's exact test), Q value = 0.068
Table S144. Gene #22: 'amp_xp22.11' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 22(XP22.11) MUTATED | 0 | 10 | 2 | 5 |
AMP PEAK 22(XP22.11) WILD-TYPE | 62 | 96 | 58 | 85 |
Figure S144. Get High-res Image Gene #22: 'amp_xp22.11' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D22V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S145. Gene #23: 'amp_xp22.11' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 23(XP22.11) MUTATED | 5 | 18 | 2 |
AMP PEAK 23(XP22.11) WILD-TYPE | 268 | 116 | 83 |
Figure S145. Get High-res Image Gene #23: 'amp_xp22.11' versus Molecular Subtype #1: 'CN_CNMF'
![](D23V1.png)
P value = 0.0133 (Fisher's exact test), Q value = 0.025
Table S146. Gene #23: 'amp_xp22.11' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
AMP PEAK 23(XP22.11) MUTATED | 1 | 8 | 1 | 7 |
AMP PEAK 23(XP22.11) WILD-TYPE | 73 | 105 | 91 | 61 |
Figure S146. Get High-res Image Gene #23: 'amp_xp22.11' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D23V4.png)
P value = 0.0326 (Fisher's exact test), Q value = 0.052
Table S147. Gene #23: 'amp_xp22.11' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 23(XP22.11) MUTATED | 2 | 12 | 11 |
AMP PEAK 23(XP22.11) WILD-TYPE | 144 | 159 | 163 |
Figure S147. Get High-res Image Gene #23: 'amp_xp22.11' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D23V5.png)
P value = 0.0136 (Fisher's exact test), Q value = 0.025
Table S148. Gene #23: 'amp_xp22.11' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 23(XP22.11) MUTATED | 3 | 17 | 5 |
AMP PEAK 23(XP22.11) WILD-TYPE | 168 | 188 | 110 |
Figure S148. Get High-res Image Gene #23: 'amp_xp22.11' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D23V6.png)
P value = 0.00803 (Fisher's exact test), Q value = 0.016
Table S149. Gene #23: 'amp_xp22.11' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 23(XP22.11) MUTATED | 4 | 4 | 17 |
AMP PEAK 23(XP22.11) WILD-TYPE | 154 | 143 | 166 |
Figure S149. Get High-res Image Gene #23: 'amp_xp22.11' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D23V7.png)
P value = 0.0103 (Fisher's exact test), Q value = 0.02
Table S150. Gene #23: 'amp_xp22.11' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 23(XP22.11) MUTATED | 2 | 8 | 2 | 12 | 1 |
AMP PEAK 23(XP22.11) WILD-TYPE | 145 | 90 | 57 | 116 | 55 |
Figure S150. Get High-res Image Gene #23: 'amp_xp22.11' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D23V8.png)
P value = 0.0466 (Fisher's exact test), Q value = 0.069
Table S151. Gene #23: 'amp_xp22.11' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 23(XP22.11) MUTATED | 2 | 10 | 2 | 1 |
AMP PEAK 23(XP22.11) WILD-TYPE | 60 | 96 | 58 | 89 |
Figure S151. Get High-res Image Gene #23: 'amp_xp22.11' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D23V9.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00013
Table S152. Gene #24: 'amp_xp21.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 24(XP21.1) MUTATED | 4 | 17 | 2 |
AMP PEAK 24(XP21.1) WILD-TYPE | 269 | 117 | 83 |
Figure S152. Get High-res Image Gene #24: 'amp_xp21.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D24V1.png)
P value = 0.0281 (Fisher's exact test), Q value = 0.046
Table S153. Gene #24: 'amp_xp21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 24(XP21.1) MUTATED | 2 | 11 | 10 |
AMP PEAK 24(XP21.1) WILD-TYPE | 158 | 154 | 157 |
Figure S153. Get High-res Image Gene #24: 'amp_xp21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D24V2.png)
P value = 0.0406 (Fisher's exact test), Q value = 0.062
Table S154. Gene #24: 'amp_xp21.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 24(XP21.1) MUTATED | 2 | 12 | 9 |
AMP PEAK 24(XP21.1) WILD-TYPE | 144 | 159 | 165 |
Figure S154. Get High-res Image Gene #24: 'amp_xp21.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D24V5.png)
P value = 0.0193 (Fisher's exact test), Q value = 0.034
Table S155. Gene #24: 'amp_xp21.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 24(XP21.1) MUTATED | 5 | 3 | 15 |
AMP PEAK 24(XP21.1) WILD-TYPE | 153 | 144 | 168 |
Figure S155. Get High-res Image Gene #24: 'amp_xp21.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D24V7.png)
P value = 0.00905 (Fisher's exact test), Q value = 0.018
Table S156. Gene #24: 'amp_xp21.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 24(XP21.1) MUTATED | 3 | 8 | 1 | 11 | 0 |
AMP PEAK 24(XP21.1) WILD-TYPE | 144 | 90 | 58 | 117 | 56 |
Figure S156. Get High-res Image Gene #24: 'amp_xp21.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D24V8.png)
P value = 0.00508 (Fisher's exact test), Q value = 0.011
Table S157. Gene #24: 'amp_xp21.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 24(XP21.1) MUTATED | 0 | 8 | 2 | 0 |
AMP PEAK 24(XP21.1) WILD-TYPE | 62 | 98 | 58 | 90 |
Figure S157. Get High-res Image Gene #24: 'amp_xp21.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D24V9.png)
P value = 0.00124 (Fisher's exact test), Q value = 0.0032
Table S158. Gene #25: 'amp_xq21.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 25(XQ21.1) MUTATED | 3 | 11 | 2 |
AMP PEAK 25(XQ21.1) WILD-TYPE | 270 | 123 | 83 |
Figure S158. Get High-res Image Gene #25: 'amp_xq21.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D25V1.png)
P value = 0.0307 (Fisher's exact test), Q value = 0.05
Table S159. Gene #25: 'amp_xq21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 25(XQ21.1) MUTATED | 1 | 9 | 6 |
AMP PEAK 25(XQ21.1) WILD-TYPE | 159 | 156 | 161 |
Figure S159. Get High-res Image Gene #25: 'amp_xq21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D25V2.png)
P value = 0.0365 (Fisher's exact test), Q value = 0.057
Table S160. Gene #25: 'amp_xq21.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
AMP PEAK 25(XQ21.1) MUTATED | 2 | 4 | 1 | 7 |
AMP PEAK 25(XQ21.1) WILD-TYPE | 72 | 109 | 91 | 61 |
Figure S160. Get High-res Image Gene #25: 'amp_xq21.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D25V4.png)
P value = 0.00771 (Fisher's exact test), Q value = 0.016
Table S161. Gene #25: 'amp_xq21.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
AMP PEAK 25(XQ21.1) MUTATED | 0 | 9 | 7 |
AMP PEAK 25(XQ21.1) WILD-TYPE | 146 | 162 | 167 |
Figure S161. Get High-res Image Gene #25: 'amp_xq21.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D25V5.png)
P value = 0.0195 (Fisher's exact test), Q value = 0.034
Table S162. Gene #25: 'amp_xq21.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 25(XQ21.1) MUTATED | 1 | 11 | 4 |
AMP PEAK 25(XQ21.1) WILD-TYPE | 170 | 194 | 111 |
Figure S162. Get High-res Image Gene #25: 'amp_xq21.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D25V6.png)
P value = 0.00247 (Fisher's exact test), Q value = 0.0058
Table S163. Gene #26: 'amp_xq21.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 26(XQ21.1) MUTATED | 2 | 9 | 3 |
AMP PEAK 26(XQ21.1) WILD-TYPE | 271 | 125 | 82 |
Figure S163. Get High-res Image Gene #26: 'amp_xq21.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D26V1.png)
P value = 0.0166 (Fisher's exact test), Q value = 0.03
Table S164. Gene #26: 'amp_xq21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 26(XQ21.1) MUTATED | 2 | 10 | 2 |
AMP PEAK 26(XQ21.1) WILD-TYPE | 158 | 155 | 165 |
Figure S164. Get High-res Image Gene #26: 'amp_xq21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D26V2.png)
P value = 0.011 (Fisher's exact test), Q value = 0.021
Table S165. Gene #26: 'amp_xq21.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
AMP PEAK 26(XQ21.1) MUTATED | 1 | 4 | 0 | 6 |
AMP PEAK 26(XQ21.1) WILD-TYPE | 73 | 109 | 92 | 62 |
Figure S165. Get High-res Image Gene #26: 'amp_xq21.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D26V4.png)
P value = 0.00411 (Fisher's exact test), Q value = 0.0091
Table S166. Gene #26: 'amp_xq21.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 26(XQ21.1) MUTATED | 1 | 12 | 1 |
AMP PEAK 26(XQ21.1) WILD-TYPE | 170 | 193 | 114 |
Figure S166. Get High-res Image Gene #26: 'amp_xq21.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D26V6.png)
P value = 0.00272 (Fisher's exact test), Q value = 0.0063
Table S167. Gene #27: 'amp_xq25' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 27(XQ25) MUTATED | 4 | 11 | 4 |
AMP PEAK 27(XQ25) WILD-TYPE | 269 | 123 | 81 |
Figure S167. Get High-res Image Gene #27: 'amp_xq25' versus Molecular Subtype #1: 'CN_CNMF'
![](D27V1.png)
P value = 0.0196 (Fisher's exact test), Q value = 0.034
Table S168. Gene #27: 'amp_xq25' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 27(XQ25) MUTATED | 2 | 12 | 5 |
AMP PEAK 27(XQ25) WILD-TYPE | 158 | 153 | 162 |
Figure S168. Get High-res Image Gene #27: 'amp_xq25' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D27V2.png)
P value = 0.0247 (Fisher's exact test), Q value = 0.042
Table S169. Gene #27: 'amp_xq25' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
AMP PEAK 27(XQ25) MUTATED | 3 | 14 | 2 |
AMP PEAK 27(XQ25) WILD-TYPE | 168 | 191 | 113 |
Figure S169. Get High-res Image Gene #27: 'amp_xq25' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D27V6.png)
P value = 0.00392 (Fisher's exact test), Q value = 0.0088
Table S170. Gene #28: 'amp_xq27.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
AMP PEAK 28(XQ27.1) MUTATED | 4 | 10 | 5 |
AMP PEAK 28(XQ27.1) WILD-TYPE | 269 | 124 | 80 |
Figure S170. Get High-res Image Gene #28: 'amp_xq27.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D28V1.png)
P value = 0.0365 (Fisher's exact test), Q value = 0.057
Table S171. Gene #28: 'amp_xq27.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
AMP PEAK 28(XQ27.1) MUTATED | 2 | 11 | 6 |
AMP PEAK 28(XQ27.1) WILD-TYPE | 158 | 154 | 161 |
Figure S171. Get High-res Image Gene #28: 'amp_xq27.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D28V2.png)
P value = 0.001 (Fisher's exact test), Q value = 0.0027
Table S172. Gene #28: 'amp_xq27.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
AMP PEAK 28(XQ27.1) MUTATED | 0 | 10 | 9 |
AMP PEAK 28(XQ27.1) WILD-TYPE | 158 | 137 | 174 |
Figure S172. Get High-res Image Gene #28: 'amp_xq27.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D28V7.png)
P value = 0.00016 (Fisher's exact test), Q value = 0.00054
Table S173. Gene #28: 'amp_xq27.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
AMP PEAK 28(XQ27.1) MUTATED | 0 | 7 | 0 | 6 | 6 |
AMP PEAK 28(XQ27.1) WILD-TYPE | 147 | 91 | 59 | 122 | 50 |
Figure S173. Get High-res Image Gene #28: 'amp_xq27.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D28V8.png)
P value = 0.0364 (Fisher's exact test), Q value = 0.057
Table S174. Gene #28: 'amp_xq27.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
AMP PEAK 28(XQ27.1) MUTATED | 0 | 4 | 1 | 8 |
AMP PEAK 28(XQ27.1) WILD-TYPE | 62 | 102 | 59 | 82 |
Figure S174. Get High-res Image Gene #28: 'amp_xq27.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D28V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S175. Gene #29: 'del_1p31.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 1(1P31.3) MUTATED | 17 | 39 | 4 |
DEL PEAK 1(1P31.3) WILD-TYPE | 256 | 95 | 81 |
Figure S175. Get High-res Image Gene #29: 'del_1p31.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D29V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S176. Gene #29: 'del_1p31.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 1(1P31.3) MUTATED | 3 | 19 | 38 |
DEL PEAK 1(1P31.3) WILD-TYPE | 157 | 146 | 129 |
Figure S176. Get High-res Image Gene #29: 'del_1p31.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D29V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S177. Gene #29: 'del_1p31.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 1(1P31.3) MUTATED | 3 | 18 | 39 |
DEL PEAK 1(1P31.3) WILD-TYPE | 143 | 153 | 135 |
Figure S177. Get High-res Image Gene #29: 'del_1p31.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D29V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S178. Gene #29: 'del_1p31.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 1(1P31.3) MUTATED | 5 | 26 | 29 |
DEL PEAK 1(1P31.3) WILD-TYPE | 166 | 179 | 86 |
Figure S178. Get High-res Image Gene #29: 'del_1p31.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D29V6.png)
P value = 0.00183 (Fisher's exact test), Q value = 0.0045
Table S179. Gene #29: 'del_1p31.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 1(1P31.3) MUTATED | 9 | 17 | 33 |
DEL PEAK 1(1P31.3) WILD-TYPE | 149 | 130 | 150 |
Figure S179. Get High-res Image Gene #29: 'del_1p31.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D29V7.png)
P value = 0.00513 (Fisher's exact test), Q value = 0.011
Table S180. Gene #29: 'del_1p31.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 1(1P31.3) MUTATED | 3 | 25 | 6 | 12 |
DEL PEAK 1(1P31.3) WILD-TYPE | 59 | 81 | 54 | 78 |
Figure S180. Get High-res Image Gene #29: 'del_1p31.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D29V9.png)
P value = 0.00105 (Fisher's exact test), Q value = 0.0029
Table S181. Gene #29: 'del_1p31.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 1(1P31.3) MUTATED | 2 | 4 | 11 | 18 | 2 | 9 |
DEL PEAK 1(1P31.3) WILD-TYPE | 68 | 37 | 29 | 64 | 23 | 51 |
Figure S181. Get High-res Image Gene #29: 'del_1p31.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D29V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S182. Gene #30: 'del_1p22.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 2(1P22.1) MUTATED | 11 | 38 | 9 |
DEL PEAK 2(1P22.1) WILD-TYPE | 262 | 96 | 76 |
Figure S182. Get High-res Image Gene #30: 'del_1p22.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D30V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S183. Gene #30: 'del_1p22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 2(1P22.1) MUTATED | 4 | 29 | 25 |
DEL PEAK 2(1P22.1) WILD-TYPE | 156 | 136 | 142 |
Figure S183. Get High-res Image Gene #30: 'del_1p22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D30V2.png)
P value = 0.00096 (Fisher's exact test), Q value = 0.0027
Table S184. Gene #30: 'del_1p22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 2(1P22.1) MUTATED | 6 | 24 | 28 |
DEL PEAK 2(1P22.1) WILD-TYPE | 140 | 147 | 146 |
Figure S184. Get High-res Image Gene #30: 'del_1p22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D30V5.png)
P value = 2e-04 (Fisher's exact test), Q value = 0.00066
Table S185. Gene #30: 'del_1p22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 2(1P22.1) MUTATED | 7 | 31 | 20 |
DEL PEAK 2(1P22.1) WILD-TYPE | 164 | 174 | 95 |
Figure S185. Get High-res Image Gene #30: 'del_1p22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D30V6.png)
P value = 0.00758 (Fisher's exact test), Q value = 0.016
Table S186. Gene #30: 'del_1p22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 2(1P22.1) MUTATED | 11 | 14 | 32 |
DEL PEAK 2(1P22.1) WILD-TYPE | 147 | 133 | 151 |
Figure S186. Get High-res Image Gene #30: 'del_1p22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D30V7.png)
P value = 0.00332 (Fisher's exact test), Q value = 0.0075
Table S187. Gene #30: 'del_1p22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 2(1P22.1) MUTATED | 10 | 6 | 9 | 26 | 6 |
DEL PEAK 2(1P22.1) WILD-TYPE | 137 | 92 | 50 | 102 | 50 |
Figure S187. Get High-res Image Gene #30: 'del_1p22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D30V8.png)
P value = 0.0104 (Fisher's exact test), Q value = 0.02
Table S188. Gene #30: 'del_1p22.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 2(1P22.1) MUTATED | 3 | 22 | 4 | 12 |
DEL PEAK 2(1P22.1) WILD-TYPE | 59 | 84 | 56 | 78 |
Figure S188. Get High-res Image Gene #30: 'del_1p22.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D30V9.png)
P value = 0.00752 (Fisher's exact test), Q value = 0.016
Table S189. Gene #30: 'del_1p22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 2(1P22.1) MUTATED | 4 | 5 | 9 | 17 | 0 | 6 |
DEL PEAK 2(1P22.1) WILD-TYPE | 66 | 36 | 31 | 65 | 25 | 54 |
Figure S189. Get High-res Image Gene #30: 'del_1p22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D30V10.png)
P value = 0.00513 (Fisher's exact test), Q value = 0.011
Table S190. Gene #31: 'del_1q23.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 3(1Q23.1) MUTATED | 8 | 10 | 10 |
DEL PEAK 3(1Q23.1) WILD-TYPE | 265 | 124 | 75 |
Figure S190. Get High-res Image Gene #31: 'del_1q23.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D31V1.png)
P value = 5e-05 (Fisher's exact test), Q value = 2e-04
Table S191. Gene #31: 'del_1q23.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 3(1Q23.1) MUTATED | 1 | 19 | 8 |
DEL PEAK 3(1Q23.1) WILD-TYPE | 159 | 146 | 159 |
Figure S191. Get High-res Image Gene #31: 'del_1q23.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D31V2.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00036
Table S192. Gene #31: 'del_1q23.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 3(1Q23.1) MUTATED | 2 | 20 | 6 |
DEL PEAK 3(1Q23.1) WILD-TYPE | 144 | 151 | 168 |
Figure S192. Get High-res Image Gene #31: 'del_1q23.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D31V5.png)
P value = 6e-04 (Fisher's exact test), Q value = 0.0017
Table S193. Gene #31: 'del_1q23.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 3(1Q23.1) MUTATED | 2 | 20 | 6 |
DEL PEAK 3(1Q23.1) WILD-TYPE | 169 | 185 | 109 |
Figure S193. Get High-res Image Gene #31: 'del_1q23.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D31V6.png)
P value = 0.0446 (Fisher's exact test), Q value = 0.067
Table S194. Gene #31: 'del_1q23.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 3(1Q23.1) MUTATED | 4 | 8 | 16 |
DEL PEAK 3(1Q23.1) WILD-TYPE | 154 | 139 | 167 |
Figure S194. Get High-res Image Gene #31: 'del_1q23.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D31V7.png)
P value = 0.0195 (Fisher's exact test), Q value = 0.034
Table S195. Gene #31: 'del_1q23.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 3(1Q23.1) MUTATED | 0 | 12 | 3 | 5 |
DEL PEAK 3(1Q23.1) WILD-TYPE | 62 | 94 | 57 | 85 |
Figure S195. Get High-res Image Gene #31: 'del_1q23.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D31V9.png)
P value = 0.00089 (Fisher's exact test), Q value = 0.0025
Table S196. Gene #32: 'del_1q42.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 4(1Q42.3) MUTATED | 15 | 23 | 9 |
DEL PEAK 4(1Q42.3) WILD-TYPE | 258 | 111 | 76 |
Figure S196. Get High-res Image Gene #32: 'del_1q42.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D32V1.png)
P value = 8e-05 (Fisher's exact test), Q value = 3e-04
Table S197. Gene #32: 'del_1q42.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 4(1Q42.3) MUTATED | 7 | 30 | 10 |
DEL PEAK 4(1Q42.3) WILD-TYPE | 153 | 135 | 157 |
Figure S197. Get High-res Image Gene #32: 'del_1q42.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D32V2.png)
P value = 0.031 (Fisher's exact test), Q value = 0.05
Table S198. Gene #32: 'del_1q42.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 4(1Q42.3) MUTATED | 10 | 6 | 3 | 21 | 7 |
DEL PEAK 4(1Q42.3) WILD-TYPE | 137 | 92 | 56 | 107 | 49 |
Figure S198. Get High-res Image Gene #32: 'del_1q42.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D32V8.png)
P value = 0.047 (Fisher's exact test), Q value = 0.07
Table S199. Gene #32: 'del_1q42.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 4(1Q42.3) MUTATED | 3 | 2 | 6 | 15 | 1 | 6 |
DEL PEAK 4(1Q42.3) WILD-TYPE | 67 | 39 | 34 | 67 | 24 | 54 |
Figure S199. Get High-res Image Gene #32: 'del_1q42.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D32V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S200. Gene #33: 'del_2p21' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 5(2P21) MUTATED | 14 | 28 | 4 |
DEL PEAK 5(2P21) WILD-TYPE | 259 | 106 | 81 |
Figure S200. Get High-res Image Gene #33: 'del_2p21' versus Molecular Subtype #1: 'CN_CNMF'
![](D33V1.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00016
Table S201. Gene #33: 'del_2p21' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 5(2P21) MUTATED | 2 | 21 | 23 |
DEL PEAK 5(2P21) WILD-TYPE | 158 | 144 | 144 |
Figure S201. Get High-res Image Gene #33: 'del_2p21' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D33V2.png)
P value = 0.0477 (Fisher's exact test), Q value = 0.071
Table S202. Gene #33: 'del_2p21' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 5(2P21) MUTATED | 5 | 8 | 18 |
DEL PEAK 5(2P21) WILD-TYPE | 118 | 60 | 138 |
Figure S202. Get High-res Image Gene #33: 'del_2p21' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D33V3.png)
P value = 4e-04 (Fisher's exact test), Q value = 0.0012
Table S203. Gene #33: 'del_2p21' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 5(2P21) MUTATED | 5 | 13 | 28 |
DEL PEAK 5(2P21) WILD-TYPE | 141 | 158 | 146 |
Figure S203. Get High-res Image Gene #33: 'del_2p21' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D33V5.png)
P value = 0.0203 (Fisher's exact test), Q value = 0.035
Table S204. Gene #33: 'del_2p21' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 5(2P21) MUTATED | 8 | 23 | 15 |
DEL PEAK 5(2P21) WILD-TYPE | 163 | 182 | 100 |
Figure S204. Get High-res Image Gene #33: 'del_2p21' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D33V6.png)
P value = 0.00077 (Fisher's exact test), Q value = 0.0022
Table S205. Gene #33: 'del_2p21' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 5(2P21) MUTATED | 13 | 4 | 26 |
DEL PEAK 5(2P21) WILD-TYPE | 145 | 143 | 157 |
Figure S205. Get High-res Image Gene #33: 'del_2p21' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D33V7.png)
P value = 0.0326 (Fisher's exact test), Q value = 0.052
Table S206. Gene #33: 'del_2p21' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 5(2P21) MUTATED | 3 | 15 | 2 | 4 |
DEL PEAK 5(2P21) WILD-TYPE | 59 | 91 | 58 | 86 |
Figure S206. Get High-res Image Gene #33: 'del_2p21' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D33V9.png)
P value = 0.0146 (Fisher's exact test), Q value = 0.027
Table S207. Gene #33: 'del_2p21' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 5(2P21) MUTATED | 2 | 0 | 4 | 12 | 3 | 3 |
DEL PEAK 5(2P21) WILD-TYPE | 68 | 41 | 36 | 70 | 22 | 57 |
Figure S207. Get High-res Image Gene #33: 'del_2p21' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D33V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S208. Gene #34: 'del_2q22.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 6(2Q22.1) MUTATED | 13 | 49 | 30 |
DEL PEAK 6(2Q22.1) WILD-TYPE | 260 | 85 | 55 |
Figure S208. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D34V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S209. Gene #34: 'del_2q22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 6(2Q22.1) MUTATED | 7 | 64 | 21 |
DEL PEAK 6(2Q22.1) WILD-TYPE | 153 | 101 | 146 |
Figure S209. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D34V2.png)
P value = 0.0495 (Fisher's exact test), Q value = 0.073
Table S210. Gene #34: 'del_2q22.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
DEL PEAK 6(2Q22.1) MUTATED | 9 | 17 | 16 | 20 |
DEL PEAK 6(2Q22.1) WILD-TYPE | 65 | 96 | 76 | 48 |
Figure S210. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D34V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S211. Gene #34: 'del_2q22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 6(2Q22.1) MUTATED | 10 | 55 | 27 |
DEL PEAK 6(2Q22.1) WILD-TYPE | 136 | 116 | 147 |
Figure S211. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D34V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S212. Gene #34: 'del_2q22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 6(2Q22.1) MUTATED | 10 | 64 | 18 |
DEL PEAK 6(2Q22.1) WILD-TYPE | 161 | 141 | 97 |
Figure S212. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D34V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S213. Gene #34: 'del_2q22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 6(2Q22.1) MUTATED | 15 | 21 | 56 |
DEL PEAK 6(2Q22.1) WILD-TYPE | 143 | 126 | 127 |
Figure S213. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D34V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S214. Gene #34: 'del_2q22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 6(2Q22.1) MUTATED | 16 | 20 | 3 | 39 | 14 |
DEL PEAK 6(2Q22.1) WILD-TYPE | 131 | 78 | 56 | 89 | 42 |
Figure S214. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D34V8.png)
P value = 0.00146 (Fisher's exact test), Q value = 0.0037
Table S215. Gene #34: 'del_2q22.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 6(2Q22.1) MUTATED | 5 | 32 | 7 | 17 |
DEL PEAK 6(2Q22.1) WILD-TYPE | 57 | 74 | 53 | 73 |
Figure S215. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D34V9.png)
P value = 0.00097 (Fisher's exact test), Q value = 0.0027
Table S216. Gene #34: 'del_2q22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 6(2Q22.1) MUTATED | 6 | 6 | 10 | 27 | 1 | 11 |
DEL PEAK 6(2Q22.1) WILD-TYPE | 64 | 35 | 30 | 55 | 24 | 49 |
Figure S216. Get High-res Image Gene #34: 'del_2q22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D34V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S217. Gene #35: 'del_2q22.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 7(2Q22.3) MUTATED | 11 | 46 | 28 |
DEL PEAK 7(2Q22.3) WILD-TYPE | 262 | 88 | 57 |
Figure S217. Get High-res Image Gene #35: 'del_2q22.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D35V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S218. Gene #35: 'del_2q22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 7(2Q22.3) MUTATED | 8 | 56 | 21 |
DEL PEAK 7(2Q22.3) WILD-TYPE | 152 | 109 | 146 |
Figure S218. Get High-res Image Gene #35: 'del_2q22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D35V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S219. Gene #35: 'del_2q22.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 7(2Q22.3) MUTATED | 11 | 49 | 25 |
DEL PEAK 7(2Q22.3) WILD-TYPE | 135 | 122 | 149 |
Figure S219. Get High-res Image Gene #35: 'del_2q22.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D35V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S220. Gene #35: 'del_2q22.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 7(2Q22.3) MUTATED | 12 | 56 | 17 |
DEL PEAK 7(2Q22.3) WILD-TYPE | 159 | 149 | 98 |
Figure S220. Get High-res Image Gene #35: 'del_2q22.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D35V6.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00033
Table S221. Gene #35: 'del_2q22.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 7(2Q22.3) MUTATED | 17 | 19 | 49 |
DEL PEAK 7(2Q22.3) WILD-TYPE | 141 | 128 | 134 |
Figure S221. Get High-res Image Gene #35: 'del_2q22.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D35V7.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00016
Table S222. Gene #35: 'del_2q22.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 7(2Q22.3) MUTATED | 14 | 15 | 4 | 36 | 16 |
DEL PEAK 7(2Q22.3) WILD-TYPE | 133 | 83 | 55 | 92 | 40 |
Figure S222. Get High-res Image Gene #35: 'del_2q22.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D35V8.png)
P value = 0.0122 (Fisher's exact test), Q value = 0.023
Table S223. Gene #35: 'del_2q22.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 7(2Q22.3) MUTATED | 5 | 26 | 6 | 19 |
DEL PEAK 7(2Q22.3) WILD-TYPE | 57 | 80 | 54 | 71 |
Figure S223. Get High-res Image Gene #35: 'del_2q22.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D35V9.png)
P value = 0.00029 (Fisher's exact test), Q value = 0.00091
Table S224. Gene #35: 'del_2q22.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 7(2Q22.3) MUTATED | 5 | 5 | 11 | 24 | 0 | 11 |
DEL PEAK 7(2Q22.3) WILD-TYPE | 65 | 36 | 29 | 58 | 25 | 49 |
Figure S224. Get High-res Image Gene #35: 'del_2q22.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D35V10.png)
P value = 0.00062 (Fisher's exact test), Q value = 0.0018
Table S225. Gene #36: 'del_3p13' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 8(3P13) MUTATED | 58 | 15 | 5 |
DEL PEAK 8(3P13) WILD-TYPE | 215 | 119 | 80 |
Figure S225. Get High-res Image Gene #36: 'del_3p13' versus Molecular Subtype #1: 'CN_CNMF'
![](D36V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S226. Gene #36: 'del_3p13' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 8(3P13) MUTATED | 18 | 12 | 48 |
DEL PEAK 8(3P13) WILD-TYPE | 142 | 153 | 119 |
Figure S226. Get High-res Image Gene #36: 'del_3p13' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D36V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S227. Gene #36: 'del_3p13' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 8(3P13) MUTATED | 15 | 12 | 51 |
DEL PEAK 8(3P13) WILD-TYPE | 131 | 159 | 123 |
Figure S227. Get High-res Image Gene #36: 'del_3p13' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D36V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S228. Gene #36: 'del_3p13' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 8(3P13) MUTATED | 20 | 19 | 39 |
DEL PEAK 8(3P13) WILD-TYPE | 151 | 186 | 76 |
Figure S228. Get High-res Image Gene #36: 'del_3p13' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D36V6.png)
P value = 0.0289 (Fisher's exact test), Q value = 0.047
Table S229. Gene #36: 'del_3p13' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 8(3P13) MUTATED | 13 | 19 | 6 | 6 |
DEL PEAK 8(3P13) WILD-TYPE | 49 | 87 | 54 | 84 |
Figure S229. Get High-res Image Gene #36: 'del_3p13' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D36V9.png)
P value = 0.0365 (Fisher's exact test), Q value = 0.057
Table S230. Gene #37: 'del_3q29' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 9(3Q29) MUTATED | 5 | 9 | 18 |
DEL PEAK 9(3Q29) WILD-TYPE | 141 | 162 | 156 |
Figure S230. Get High-res Image Gene #37: 'del_3q29' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D37V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S231. Gene #38: 'del_4q28.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 10(4Q28.2) MUTATED | 7 | 30 | 14 |
DEL PEAK 10(4Q28.2) WILD-TYPE | 266 | 104 | 71 |
Figure S231. Get High-res Image Gene #38: 'del_4q28.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D38V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S232. Gene #38: 'del_4q28.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 10(4Q28.2) MUTATED | 3 | 35 | 13 |
DEL PEAK 10(4Q28.2) WILD-TYPE | 157 | 130 | 154 |
Figure S232. Get High-res Image Gene #38: 'del_4q28.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D38V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S233. Gene #38: 'del_4q28.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 10(4Q28.2) MUTATED | 4 | 35 | 12 |
DEL PEAK 10(4Q28.2) WILD-TYPE | 142 | 136 | 162 |
Figure S233. Get High-res Image Gene #38: 'del_4q28.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D38V5.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S234. Gene #38: 'del_4q28.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 10(4Q28.2) MUTATED | 5 | 37 | 9 |
DEL PEAK 10(4Q28.2) WILD-TYPE | 166 | 168 | 106 |
Figure S234. Get High-res Image Gene #38: 'del_4q28.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D38V6.png)
P value = 0.0156 (Fisher's exact test), Q value = 0.028
Table S235. Gene #38: 'del_4q28.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 10(4Q28.2) MUTATED | 11 | 8 | 3 | 24 | 4 |
DEL PEAK 10(4Q28.2) WILD-TYPE | 136 | 90 | 56 | 104 | 52 |
Figure S235. Get High-res Image Gene #38: 'del_4q28.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D38V8.png)
P value = 0.00086 (Fisher's exact test), Q value = 0.0024
Table S236. Gene #38: 'del_4q28.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 10(4Q28.2) MUTATED | 0 | 18 | 5 | 6 |
DEL PEAK 10(4Q28.2) WILD-TYPE | 62 | 88 | 55 | 84 |
Figure S236. Get High-res Image Gene #38: 'del_4q28.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D38V9.png)
P value = 0.0258 (Fisher's exact test), Q value = 0.043
Table S237. Gene #38: 'del_4q28.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 10(4Q28.2) MUTATED | 4 | 2 | 7 | 13 | 0 | 3 |
DEL PEAK 10(4Q28.2) WILD-TYPE | 66 | 39 | 33 | 69 | 25 | 57 |
Figure S237. Get High-res Image Gene #38: 'del_4q28.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D38V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S238. Gene #39: 'del_5q11.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 11(5Q11.2) MUTATED | 23 | 64 | 13 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 250 | 70 | 72 |
Figure S238. Get High-res Image Gene #39: 'del_5q11.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D39V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S239. Gene #39: 'del_5q11.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 11(5Q11.2) MUTATED | 11 | 51 | 38 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 149 | 114 | 129 |
Figure S239. Get High-res Image Gene #39: 'del_5q11.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D39V2.png)
P value = 0.00183 (Fisher's exact test), Q value = 0.0045
Table S240. Gene #39: 'del_5q11.2' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 11(5Q11.2) MUTATED | 23 | 6 | 45 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 100 | 62 | 111 |
Figure S240. Get High-res Image Gene #39: 'del_5q11.2' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D39V3.png)
P value = 0.00031 (Fisher's exact test), Q value = 0.00096
Table S241. Gene #39: 'del_5q11.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 11(5Q11.2) MUTATED | 14 | 44 | 42 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 132 | 127 | 132 |
Figure S241. Get High-res Image Gene #39: 'del_5q11.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D39V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S242. Gene #39: 'del_5q11.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 11(5Q11.2) MUTATED | 15 | 55 | 30 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 156 | 150 | 85 |
Figure S242. Get High-res Image Gene #39: 'del_5q11.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D39V6.png)
P value = 0.00018 (Fisher's exact test), Q value = 6e-04
Table S243. Gene #39: 'del_5q11.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 11(5Q11.2) MUTATED | 23 | 20 | 56 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 135 | 127 | 127 |
Figure S243. Get High-res Image Gene #39: 'del_5q11.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D39V7.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S244. Gene #39: 'del_5q11.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 11(5Q11.2) MUTATED | 19 | 9 | 15 | 45 | 11 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 128 | 89 | 44 | 83 | 45 |
Figure S244. Get High-res Image Gene #39: 'del_5q11.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D39V8.png)
P value = 0.00095 (Fisher's exact test), Q value = 0.0026
Table S245. Gene #39: 'del_5q11.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 11(5Q11.2) MUTATED | 6 | 36 | 9 | 18 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 56 | 70 | 51 | 72 |
Figure S245. Get High-res Image Gene #39: 'del_5q11.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D39V9.png)
P value = 2e-04 (Fisher's exact test), Q value = 0.00066
Table S246. Gene #39: 'del_5q11.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 11(5Q11.2) MUTATED | 9 | 4 | 16 | 28 | 2 | 10 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 61 | 37 | 24 | 54 | 23 | 50 |
Figure S246. Get High-res Image Gene #39: 'del_5q11.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D39V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S247. Gene #40: 'del_5q13.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 12(5Q13.2) MUTATED | 19 | 67 | 13 |
DEL PEAK 12(5Q13.2) WILD-TYPE | 254 | 67 | 72 |
Figure S247. Get High-res Image Gene #40: 'del_5q13.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D40V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S248. Gene #40: 'del_5q13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 12(5Q13.2) MUTATED | 12 | 53 | 34 |
DEL PEAK 12(5Q13.2) WILD-TYPE | 148 | 112 | 133 |
Figure S248. Get High-res Image Gene #40: 'del_5q13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D40V2.png)
P value = 0.0033 (Fisher's exact test), Q value = 0.0075
Table S249. Gene #40: 'del_5q13.2' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 12(5Q13.2) MUTATED | 21 | 7 | 45 |
DEL PEAK 12(5Q13.2) WILD-TYPE | 102 | 61 | 111 |
Figure S249. Get High-res Image Gene #40: 'del_5q13.2' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D40V3.png)
P value = 0.00107 (Fisher's exact test), Q value = 0.0029
Table S250. Gene #40: 'del_5q13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 12(5Q13.2) MUTATED | 15 | 44 | 40 |
DEL PEAK 12(5Q13.2) WILD-TYPE | 131 | 127 | 134 |
Figure S250. Get High-res Image Gene #40: 'del_5q13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D40V5.png)
P value = 0.0027 (Fisher's exact test), Q value = 0.0063
Table S251. Gene #40: 'del_5q13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 12(5Q13.2) MUTATED | 21 | 54 | 24 |
DEL PEAK 12(5Q13.2) WILD-TYPE | 150 | 151 | 91 |
Figure S251. Get High-res Image Gene #40: 'del_5q13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D40V6.png)
P value = 0.00032 (Fisher's exact test), Q value = 0.00098
Table S252. Gene #40: 'del_5q13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 12(5Q13.2) MUTATED | 32 | 15 | 51 |
DEL PEAK 12(5Q13.2) WILD-TYPE | 126 | 132 | 132 |
Figure S252. Get High-res Image Gene #40: 'del_5q13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D40V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S253. Gene #40: 'del_5q13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 12(5Q13.2) MUTATED | 27 | 7 | 14 | 44 | 6 |
DEL PEAK 12(5Q13.2) WILD-TYPE | 120 | 91 | 45 | 84 | 50 |
Figure S253. Get High-res Image Gene #40: 'del_5q13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D40V8.png)
P value = 0.00214 (Fisher's exact test), Q value = 0.0052
Table S254. Gene #40: 'del_5q13.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 12(5Q13.2) MUTATED | 7 | 34 | 7 | 16 |
DEL PEAK 12(5Q13.2) WILD-TYPE | 55 | 72 | 53 | 74 |
Figure S254. Get High-res Image Gene #40: 'del_5q13.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D40V9.png)
P value = 0.00022 (Fisher's exact test), Q value = 0.00071
Table S255. Gene #40: 'del_5q13.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 12(5Q13.2) MUTATED | 10 | 3 | 14 | 27 | 4 | 6 |
DEL PEAK 12(5Q13.2) WILD-TYPE | 60 | 38 | 26 | 55 | 21 | 54 |
Figure S255. Get High-res Image Gene #40: 'del_5q13.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D40V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S256. Gene #41: 'del_5q21.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 13(5Q21.1) MUTATED | 13 | 60 | 36 |
DEL PEAK 13(5Q21.1) WILD-TYPE | 260 | 74 | 49 |
Figure S256. Get High-res Image Gene #41: 'del_5q21.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D41V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S257. Gene #41: 'del_5q21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 13(5Q21.1) MUTATED | 11 | 73 | 25 |
DEL PEAK 13(5Q21.1) WILD-TYPE | 149 | 92 | 142 |
Figure S257. Get High-res Image Gene #41: 'del_5q21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D41V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S258. Gene #41: 'del_5q21.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 13(5Q21.1) MUTATED | 13 | 69 | 27 |
DEL PEAK 13(5Q21.1) WILD-TYPE | 133 | 102 | 147 |
Figure S258. Get High-res Image Gene #41: 'del_5q21.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D41V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S259. Gene #41: 'del_5q21.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 13(5Q21.1) MUTATED | 17 | 72 | 20 |
DEL PEAK 13(5Q21.1) WILD-TYPE | 154 | 133 | 95 |
Figure S259. Get High-res Image Gene #41: 'del_5q21.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D41V6.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.00069
Table S260. Gene #41: 'del_5q21.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 13(5Q21.1) MUTATED | 30 | 20 | 58 |
DEL PEAK 13(5Q21.1) WILD-TYPE | 128 | 127 | 125 |
Figure S260. Get High-res Image Gene #41: 'del_5q21.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D41V7.png)
P value = 0.00261 (Fisher's exact test), Q value = 0.0061
Table S261. Gene #41: 'del_5q21.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 13(5Q21.1) MUTATED | 26 | 14 | 14 | 44 | 10 |
DEL PEAK 13(5Q21.1) WILD-TYPE | 121 | 84 | 45 | 84 | 46 |
Figure S261. Get High-res Image Gene #41: 'del_5q21.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D41V8.png)
P value = 0.00449 (Fisher's exact test), Q value = 0.01
Table S262. Gene #41: 'del_5q21.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 13(5Q21.1) MUTATED | 8 | 7 | 10 | 29 | 2 | 11 |
DEL PEAK 13(5Q21.1) WILD-TYPE | 62 | 34 | 30 | 53 | 23 | 49 |
Figure S262. Get High-res Image Gene #41: 'del_5q21.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D41V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S263. Gene #42: 'del_6p25.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 14(6P25.1) MUTATED | 12 | 30 | 4 |
DEL PEAK 14(6P25.1) WILD-TYPE | 261 | 104 | 81 |
Figure S263. Get High-res Image Gene #42: 'del_6p25.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D42V1.png)
P value = 0.0138 (Fisher's exact test), Q value = 0.026
Table S264. Gene #42: 'del_6p25.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 14(6P25.1) MUTATED | 8 | 14 | 24 |
DEL PEAK 14(6P25.1) WILD-TYPE | 152 | 151 | 143 |
Figure S264. Get High-res Image Gene #42: 'del_6p25.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D42V2.png)
P value = 0.00648 (Fisher's exact test), Q value = 0.014
Table S265. Gene #42: 'del_6p25.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 14(6P25.1) MUTATED | 6 | 15 | 25 |
DEL PEAK 14(6P25.1) WILD-TYPE | 140 | 156 | 149 |
Figure S265. Get High-res Image Gene #42: 'del_6p25.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D42V5.png)
P value = 0.0119 (Fisher's exact test), Q value = 0.023
Table S266. Gene #42: 'del_6p25.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 14(6P25.1) MUTATED | 10 | 17 | 19 |
DEL PEAK 14(6P25.1) WILD-TYPE | 161 | 188 | 96 |
Figure S266. Get High-res Image Gene #42: 'del_6p25.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D42V6.png)
P value = 0.0491 (Fisher's exact test), Q value = 0.072
Table S267. Gene #42: 'del_6p25.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 14(6P25.1) MUTATED | 9 | 5 | 8 | 19 | 5 |
DEL PEAK 14(6P25.1) WILD-TYPE | 138 | 93 | 51 | 109 | 51 |
Figure S267. Get High-res Image Gene #42: 'del_6p25.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D42V8.png)
P value = 0.0166 (Fisher's exact test), Q value = 0.03
Table S268. Gene #42: 'del_6p25.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 14(6P25.1) MUTATED | 3 | 1 | 9 | 12 | 2 | 5 |
DEL PEAK 14(6P25.1) WILD-TYPE | 67 | 40 | 31 | 70 | 23 | 55 |
Figure S268. Get High-res Image Gene #42: 'del_6p25.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D42V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S269. Gene #43: 'del_6q14.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 15(6Q14.3) MUTATED | 50 | 76 | 54 |
DEL PEAK 15(6Q14.3) WILD-TYPE | 223 | 58 | 31 |
Figure S269. Get High-res Image Gene #43: 'del_6q14.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D43V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S270. Gene #43: 'del_6q14.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 15(6Q14.3) MUTATED | 24 | 118 | 38 |
DEL PEAK 15(6Q14.3) WILD-TYPE | 136 | 47 | 129 |
Figure S270. Get High-res Image Gene #43: 'del_6q14.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D43V2.png)
P value = 0.015 (Fisher's exact test), Q value = 0.027
Table S271. Gene #43: 'del_6q14.3' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 15(6Q14.3) MUTATED | 34 | 23 | 69 |
DEL PEAK 15(6Q14.3) WILD-TYPE | 89 | 45 | 87 |
Figure S271. Get High-res Image Gene #43: 'del_6q14.3' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D43V3.png)
P value = 5e-05 (Fisher's exact test), Q value = 2e-04
Table S272. Gene #43: 'del_6q14.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
DEL PEAK 15(6Q14.3) MUTATED | 19 | 43 | 24 | 40 |
DEL PEAK 15(6Q14.3) WILD-TYPE | 55 | 70 | 68 | 28 |
Figure S272. Get High-res Image Gene #43: 'del_6q14.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D43V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S273. Gene #43: 'del_6q14.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 15(6Q14.3) MUTATED | 31 | 102 | 47 |
DEL PEAK 15(6Q14.3) WILD-TYPE | 115 | 69 | 127 |
Figure S273. Get High-res Image Gene #43: 'del_6q14.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D43V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S274. Gene #43: 'del_6q14.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 15(6Q14.3) MUTATED | 33 | 117 | 30 |
DEL PEAK 15(6Q14.3) WILD-TYPE | 138 | 88 | 85 |
Figure S274. Get High-res Image Gene #43: 'del_6q14.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D43V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S275. Gene #43: 'del_6q14.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 15(6Q14.3) MUTATED | 43 | 42 | 94 |
DEL PEAK 15(6Q14.3) WILD-TYPE | 115 | 105 | 89 |
Figure S275. Get High-res Image Gene #43: 'del_6q14.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D43V7.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S276. Gene #43: 'del_6q14.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 15(6Q14.3) MUTATED | 38 | 35 | 14 | 68 | 24 |
DEL PEAK 15(6Q14.3) WILD-TYPE | 109 | 63 | 45 | 60 | 32 |
Figure S276. Get High-res Image Gene #43: 'del_6q14.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D43V8.png)
P value = 0.00214 (Fisher's exact test), Q value = 0.0052
Table S277. Gene #43: 'del_6q14.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 15(6Q14.3) MUTATED | 13 | 51 | 18 | 27 |
DEL PEAK 15(6Q14.3) WILD-TYPE | 49 | 55 | 42 | 63 |
Figure S277. Get High-res Image Gene #43: 'del_6q14.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D43V9.png)
P value = 0.00496 (Fisher's exact test), Q value = 0.011
Table S278. Gene #43: 'del_6q14.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 15(6Q14.3) MUTATED | 17 | 13 | 16 | 41 | 4 | 18 |
DEL PEAK 15(6Q14.3) WILD-TYPE | 53 | 28 | 24 | 41 | 21 | 42 |
Figure S278. Get High-res Image Gene #43: 'del_6q14.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D43V10.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00033
Table S279. Gene #44: 'del_7q31.33' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 16(7Q31.33) MUTATED | 7 | 18 | 3 |
DEL PEAK 16(7Q31.33) WILD-TYPE | 266 | 116 | 82 |
Figure S279. Get High-res Image Gene #44: 'del_7q31.33' versus Molecular Subtype #1: 'CN_CNMF'
![](D44V1.png)
P value = 0.0151 (Fisher's exact test), Q value = 0.027
Table S280. Gene #44: 'del_7q31.33' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 16(7Q31.33) MUTATED | 3 | 15 | 10 |
DEL PEAK 16(7Q31.33) WILD-TYPE | 157 | 150 | 157 |
Figure S280. Get High-res Image Gene #44: 'del_7q31.33' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D44V2.png)
P value = 0.00016 (Fisher's exact test), Q value = 0.00054
Table S281. Gene #44: 'del_7q31.33' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 16(7Q31.33) MUTATED | 0 | 15 | 13 |
DEL PEAK 16(7Q31.33) WILD-TYPE | 146 | 156 | 161 |
Figure S281. Get High-res Image Gene #44: 'del_7q31.33' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D44V5.png)
P value = 0.00031 (Fisher's exact test), Q value = 0.00096
Table S282. Gene #44: 'del_7q31.33' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 16(7Q31.33) MUTATED | 1 | 17 | 10 |
DEL PEAK 16(7Q31.33) WILD-TYPE | 170 | 188 | 105 |
Figure S282. Get High-res Image Gene #44: 'del_7q31.33' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D44V6.png)
P value = 0.00114 (Fisher's exact test), Q value = 0.0031
Table S283. Gene #44: 'del_7q31.33' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 16(7Q31.33) MUTATED | 4 | 4 | 20 |
DEL PEAK 16(7Q31.33) WILD-TYPE | 154 | 143 | 163 |
Figure S283. Get High-res Image Gene #44: 'del_7q31.33' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D44V7.png)
P value = 0.00023 (Fisher's exact test), Q value = 0.00074
Table S284. Gene #44: 'del_7q31.33' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 16(7Q31.33) MUTATED | 4 | 1 | 2 | 18 | 3 |
DEL PEAK 16(7Q31.33) WILD-TYPE | 143 | 97 | 57 | 110 | 53 |
Figure S284. Get High-res Image Gene #44: 'del_7q31.33' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D44V8.png)
P value = 0.0467 (Fisher's exact test), Q value = 0.069
Table S285. Gene #44: 'del_7q31.33' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 16(7Q31.33) MUTATED | 3 | 0 | 5 | 7 | 0 | 1 |
DEL PEAK 16(7Q31.33) WILD-TYPE | 67 | 41 | 35 | 75 | 25 | 59 |
Figure S285. Get High-res Image Gene #44: 'del_7q31.33' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D44V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S286. Gene #45: 'del_8p23.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 17(8P23.2) MUTATED | 123 | 90 | 11 |
DEL PEAK 17(8P23.2) WILD-TYPE | 150 | 44 | 74 |
Figure S286. Get High-res Image Gene #45: 'del_8p23.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D45V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S287. Gene #45: 'del_8p23.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 17(8P23.2) MUTATED | 43 | 80 | 101 |
DEL PEAK 17(8P23.2) WILD-TYPE | 117 | 85 | 66 |
Figure S287. Get High-res Image Gene #45: 'del_8p23.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D45V2.png)
P value = 0.0209 (Fisher's exact test), Q value = 0.036
Table S288. Gene #45: 'del_8p23.2' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 17(8P23.2) MUTATED | 51 | 21 | 79 |
DEL PEAK 17(8P23.2) WILD-TYPE | 72 | 47 | 77 |
Figure S288. Get High-res Image Gene #45: 'del_8p23.2' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D45V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S289. Gene #45: 'del_8p23.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 17(8P23.2) MUTATED | 46 | 75 | 103 |
DEL PEAK 17(8P23.2) WILD-TYPE | 100 | 96 | 71 |
Figure S289. Get High-res Image Gene #45: 'del_8p23.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D45V5.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S290. Gene #45: 'del_8p23.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 17(8P23.2) MUTATED | 52 | 101 | 71 |
DEL PEAK 17(8P23.2) WILD-TYPE | 119 | 104 | 44 |
Figure S290. Get High-res Image Gene #45: 'del_8p23.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D45V6.png)
P value = 0.00025 (Fisher's exact test), Q value = 8e-04
Table S291. Gene #45: 'del_8p23.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 17(8P23.2) MUTATED | 61 | 56 | 105 |
DEL PEAK 17(8P23.2) WILD-TYPE | 97 | 91 | 78 |
Figure S291. Get High-res Image Gene #45: 'del_8p23.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D45V7.png)
P value = 0.00032 (Fisher's exact test), Q value = 0.00098
Table S292. Gene #45: 'del_8p23.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 17(8P23.2) MUTATED | 53 | 34 | 31 | 75 | 29 |
DEL PEAK 17(8P23.2) WILD-TYPE | 94 | 64 | 28 | 53 | 27 |
Figure S292. Get High-res Image Gene #45: 'del_8p23.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D45V8.png)
P value = 0.0352 (Fisher's exact test), Q value = 0.056
Table S293. Gene #45: 'del_8p23.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 17(8P23.2) MUTATED | 17 | 51 | 22 | 42 |
DEL PEAK 17(8P23.2) WILD-TYPE | 45 | 55 | 38 | 48 |
Figure S293. Get High-res Image Gene #45: 'del_8p23.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D45V9.png)
P value = 0.00167 (Fisher's exact test), Q value = 0.0042
Table S294. Gene #45: 'del_8p23.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 17(8P23.2) MUTATED | 22 | 11 | 25 | 39 | 6 | 29 |
DEL PEAK 17(8P23.2) WILD-TYPE | 48 | 30 | 15 | 43 | 19 | 31 |
Figure S294. Get High-res Image Gene #45: 'del_8p23.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D45V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S295. Gene #46: 'del_8p21.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 18(8P21.3) MUTATED | 161 | 107 | 26 |
DEL PEAK 18(8P21.3) WILD-TYPE | 112 | 27 | 59 |
Figure S295. Get High-res Image Gene #46: 'del_8p21.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D46V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S296. Gene #46: 'del_8p21.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 18(8P21.3) MUTATED | 60 | 106 | 128 |
DEL PEAK 18(8P21.3) WILD-TYPE | 100 | 59 | 39 |
Figure S296. Get High-res Image Gene #46: 'del_8p21.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D46V2.png)
P value = 0.0106 (Fisher's exact test), Q value = 0.021
Table S297. Gene #46: 'del_8p21.3' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 18(8P21.3) MUTATED | 66 | 36 | 108 |
DEL PEAK 18(8P21.3) WILD-TYPE | 57 | 32 | 48 |
Figure S297. Get High-res Image Gene #46: 'del_8p21.3' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D46V3.png)
P value = 0.00134 (Fisher's exact test), Q value = 0.0034
Table S298. Gene #46: 'del_8p21.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
DEL PEAK 18(8P21.3) MUTATED | 32 | 72 | 55 | 51 |
DEL PEAK 18(8P21.3) WILD-TYPE | 42 | 41 | 37 | 17 |
Figure S298. Get High-res Image Gene #46: 'del_8p21.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D46V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S299. Gene #46: 'del_8p21.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 18(8P21.3) MUTATED | 62 | 97 | 135 |
DEL PEAK 18(8P21.3) WILD-TYPE | 84 | 74 | 39 |
Figure S299. Get High-res Image Gene #46: 'del_8p21.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D46V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S300. Gene #46: 'del_8p21.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 18(8P21.3) MUTATED | 77 | 128 | 89 |
DEL PEAK 18(8P21.3) WILD-TYPE | 94 | 77 | 26 |
Figure S300. Get High-res Image Gene #46: 'del_8p21.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D46V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S301. Gene #46: 'del_8p21.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 18(8P21.3) MUTATED | 81 | 77 | 134 |
DEL PEAK 18(8P21.3) WILD-TYPE | 77 | 70 | 49 |
Figure S301. Get High-res Image Gene #46: 'del_8p21.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D46V7.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S302. Gene #46: 'del_8p21.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 18(8P21.3) MUTATED | 67 | 50 | 42 | 97 | 36 |
DEL PEAK 18(8P21.3) WILD-TYPE | 80 | 48 | 17 | 31 | 20 |
Figure S302. Get High-res Image Gene #46: 'del_8p21.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D46V8.png)
P value = 0.0091 (Fisher's exact test), Q value = 0.018
Table S303. Gene #46: 'del_8p21.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 18(8P21.3) MUTATED | 26 | 69 | 28 | 55 |
DEL PEAK 18(8P21.3) WILD-TYPE | 36 | 37 | 32 | 35 |
Figure S303. Get High-res Image Gene #46: 'del_8p21.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D46V9.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00013
Table S304. Gene #46: 'del_8p21.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 18(8P21.3) MUTATED | 24 | 17 | 32 | 53 | 14 | 38 |
DEL PEAK 18(8P21.3) WILD-TYPE | 46 | 24 | 8 | 29 | 11 | 22 |
Figure S304. Get High-res Image Gene #46: 'del_8p21.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D46V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S305. Gene #47: 'del_9p23' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 19(9P23) MUTATED | 15 | 28 | 2 |
DEL PEAK 19(9P23) WILD-TYPE | 258 | 106 | 83 |
Figure S305. Get High-res Image Gene #47: 'del_9p23' versus Molecular Subtype #1: 'CN_CNMF'
![](D47V1.png)
P value = 0.0101 (Fisher's exact test), Q value = 0.02
Table S306. Gene #47: 'del_9p23' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 19(9P23) MUTATED | 5 | 4 | 22 |
DEL PEAK 19(9P23) WILD-TYPE | 118 | 64 | 134 |
Figure S306. Get High-res Image Gene #47: 'del_9p23' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D47V3.png)
P value = 0.0053 (Fisher's exact test), Q value = 0.011
Table S307. Gene #47: 'del_9p23' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
DEL PEAK 19(9P23) MUTATED | 2 | 11 | 5 | 13 |
DEL PEAK 19(9P23) WILD-TYPE | 72 | 102 | 87 | 55 |
Figure S307. Get High-res Image Gene #47: 'del_9p23' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D47V4.png)
P value = 0.00016 (Fisher's exact test), Q value = 0.00054
Table S308. Gene #47: 'del_9p23' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 19(9P23) MUTATED | 3 | 16 | 26 |
DEL PEAK 19(9P23) WILD-TYPE | 143 | 155 | 148 |
Figure S308. Get High-res Image Gene #47: 'del_9p23' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D47V5.png)
P value = 0.00195 (Fisher's exact test), Q value = 0.0048
Table S309. Gene #47: 'del_9p23' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 19(9P23) MUTATED | 7 | 19 | 19 |
DEL PEAK 19(9P23) WILD-TYPE | 164 | 186 | 96 |
Figure S309. Get High-res Image Gene #47: 'del_9p23' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D47V6.png)
P value = 0.0275 (Fisher's exact test), Q value = 0.046
Table S310. Gene #47: 'del_9p23' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 19(9P23) MUTATED | 13 | 7 | 24 |
DEL PEAK 19(9P23) WILD-TYPE | 145 | 140 | 159 |
Figure S310. Get High-res Image Gene #47: 'del_9p23' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D47V7.png)
P value = 0.0164 (Fisher's exact test), Q value = 0.029
Table S311. Gene #47: 'del_9p23' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 19(9P23) MUTATED | 1 | 3 | 8 | 10 | 3 | 4 |
DEL PEAK 19(9P23) WILD-TYPE | 69 | 38 | 32 | 72 | 22 | 56 |
Figure S311. Get High-res Image Gene #47: 'del_9p23' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D47V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S312. Gene #48: 'del_10q23.31' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 20(10Q23.31) MUTATED | 78 | 68 | 11 |
DEL PEAK 20(10Q23.31) WILD-TYPE | 195 | 66 | 74 |
Figure S312. Get High-res Image Gene #48: 'del_10q23.31' versus Molecular Subtype #1: 'CN_CNMF'
![](D48V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S313. Gene #48: 'del_10q23.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 20(10Q23.31) MUTATED | 28 | 39 | 90 |
DEL PEAK 20(10Q23.31) WILD-TYPE | 132 | 126 | 77 |
Figure S313. Get High-res Image Gene #48: 'del_10q23.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D48V2.png)
P value = 0.0358 (Fisher's exact test), Q value = 0.057
Table S314. Gene #48: 'del_10q23.31' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 20(10Q23.31) MUTATED | 31 | 24 | 62 |
DEL PEAK 20(10Q23.31) WILD-TYPE | 92 | 44 | 94 |
Figure S314. Get High-res Image Gene #48: 'del_10q23.31' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D48V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S315. Gene #48: 'del_10q23.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 20(10Q23.31) MUTATED | 21 | 31 | 105 |
DEL PEAK 20(10Q23.31) WILD-TYPE | 125 | 140 | 69 |
Figure S315. Get High-res Image Gene #48: 'del_10q23.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D48V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S316. Gene #48: 'del_10q23.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 20(10Q23.31) MUTATED | 33 | 47 | 77 |
DEL PEAK 20(10Q23.31) WILD-TYPE | 138 | 158 | 38 |
Figure S316. Get High-res Image Gene #48: 'del_10q23.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D48V6.png)
P value = 0.0133 (Fisher's exact test), Q value = 0.025
Table S317. Gene #48: 'del_10q23.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 20(10Q23.31) MUTATED | 47 | 36 | 72 |
DEL PEAK 20(10Q23.31) WILD-TYPE | 111 | 111 | 111 |
Figure S317. Get High-res Image Gene #48: 'del_10q23.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D48V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S318. Gene #48: 'del_10q23.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 20(10Q23.31) MUTATED | 41 | 12 | 25 | 57 | 20 |
DEL PEAK 20(10Q23.31) WILD-TYPE | 106 | 86 | 34 | 71 | 36 |
Figure S318. Get High-res Image Gene #48: 'del_10q23.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D48V8.png)
P value = 0.04 (Fisher's exact test), Q value = 0.061
Table S319. Gene #48: 'del_10q23.31' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 20(10Q23.31) MUTATED | 16 | 41 | 15 | 39 |
DEL PEAK 20(10Q23.31) WILD-TYPE | 46 | 65 | 45 | 51 |
Figure S319. Get High-res Image Gene #48: 'del_10q23.31' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D48V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S320. Gene #48: 'del_10q23.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 20(10Q23.31) MUTATED | 10 | 3 | 32 | 31 | 9 | 26 |
DEL PEAK 20(10Q23.31) WILD-TYPE | 60 | 38 | 8 | 51 | 16 | 34 |
Figure S320. Get High-res Image Gene #48: 'del_10q23.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D48V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S321. Gene #49: 'del_11p11.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 21(11P11.2) MUTATED | 5 | 23 | 6 |
DEL PEAK 21(11P11.2) WILD-TYPE | 268 | 111 | 79 |
Figure S321. Get High-res Image Gene #49: 'del_11p11.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D49V1.png)
P value = 0.00248 (Fisher's exact test), Q value = 0.0058
Table S322. Gene #49: 'del_11p11.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 21(11P11.2) MUTATED | 6 | 21 | 7 |
DEL PEAK 21(11P11.2) WILD-TYPE | 154 | 144 | 160 |
Figure S322. Get High-res Image Gene #49: 'del_11p11.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D49V2.png)
P value = 0.00124 (Fisher's exact test), Q value = 0.0032
Table S323. Gene #49: 'del_11p11.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 21(11P11.2) MUTATED | 6 | 22 | 6 |
DEL PEAK 21(11P11.2) WILD-TYPE | 140 | 149 | 168 |
Figure S323. Get High-res Image Gene #49: 'del_11p11.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D49V5.png)
P value = 0.0257 (Fisher's exact test), Q value = 0.043
Table S324. Gene #49: 'del_11p11.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 21(11P11.2) MUTATED | 7 | 22 | 5 |
DEL PEAK 21(11P11.2) WILD-TYPE | 164 | 183 | 110 |
Figure S324. Get High-res Image Gene #49: 'del_11p11.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D49V6.png)
P value = 0.0289 (Fisher's exact test), Q value = 0.047
Table S325. Gene #49: 'del_11p11.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 21(11P11.2) MUTATED | 6 | 8 | 20 |
DEL PEAK 21(11P11.2) WILD-TYPE | 152 | 139 | 163 |
Figure S325. Get High-res Image Gene #49: 'del_11p11.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D49V7.png)
P value = 0.0242 (Fisher's exact test), Q value = 0.041
Table S326. Gene #49: 'del_11p11.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 21(11P11.2) MUTATED | 5 | 7 | 2 | 17 | 3 |
DEL PEAK 21(11P11.2) WILD-TYPE | 142 | 91 | 57 | 111 | 53 |
Figure S326. Get High-res Image Gene #49: 'del_11p11.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D49V8.png)
P value = 0.0086 (Fisher's exact test), Q value = 0.017
Table S327. Gene #49: 'del_11p11.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 21(11P11.2) MUTATED | 0 | 13 | 3 | 4 |
DEL PEAK 21(11P11.2) WILD-TYPE | 62 | 93 | 57 | 86 |
Figure S327. Get High-res Image Gene #49: 'del_11p11.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D49V9.png)
P value = 0.0436 (Fisher's exact test), Q value = 0.066
Table S328. Gene #50: 'del_11q22.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 22(11Q22.3) MUTATED | 19 | 19 | 5 |
DEL PEAK 22(11Q22.3) WILD-TYPE | 254 | 115 | 80 |
Figure S328. Get High-res Image Gene #50: 'del_11q22.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D50V1.png)
P value = 0.02 (Fisher's exact test), Q value = 0.035
Table S329. Gene #50: 'del_11q22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 22(11Q22.3) MUTATED | 10 | 23 | 10 |
DEL PEAK 22(11Q22.3) WILD-TYPE | 150 | 142 | 157 |
Figure S329. Get High-res Image Gene #50: 'del_11q22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D50V2.png)
P value = 0.0377 (Fisher's exact test), Q value = 0.059
Table S330. Gene #50: 'del_11q22.3' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 22(11Q22.3) MUTATED | 6 | 10 | 19 |
DEL PEAK 22(11Q22.3) WILD-TYPE | 117 | 58 | 137 |
Figure S330. Get High-res Image Gene #50: 'del_11q22.3' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D50V3.png)
P value = 0.0121 (Fisher's exact test), Q value = 0.023
Table S331. Gene #50: 'del_11q22.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 22(11Q22.3) MUTATED | 2 | 0 | 1 | 12 | 1 | 6 |
DEL PEAK 22(11Q22.3) WILD-TYPE | 68 | 41 | 39 | 70 | 24 | 54 |
Figure S331. Get High-res Image Gene #50: 'del_11q22.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D50V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S332. Gene #52: 'del_12p13.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 24(12P13.1) MUTATED | 59 | 54 | 11 |
DEL PEAK 24(12P13.1) WILD-TYPE | 214 | 80 | 74 |
Figure S332. Get High-res Image Gene #52: 'del_12p13.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D52V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S333. Gene #52: 'del_12p13.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 24(12P13.1) MUTATED | 20 | 53 | 51 |
DEL PEAK 24(12P13.1) WILD-TYPE | 140 | 112 | 116 |
Figure S333. Get High-res Image Gene #52: 'del_12p13.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D52V2.png)
P value = 0.0232 (Fisher's exact test), Q value = 0.039
Table S334. Gene #52: 'del_12p13.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
DEL PEAK 24(12P13.1) MUTATED | 13 | 29 | 21 | 27 |
DEL PEAK 24(12P13.1) WILD-TYPE | 61 | 84 | 71 | 41 |
Figure S334. Get High-res Image Gene #52: 'del_12p13.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D52V4.png)
P value = 0.00126 (Fisher's exact test), Q value = 0.0032
Table S335. Gene #52: 'del_12p13.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 24(12P13.1) MUTATED | 25 | 39 | 60 |
DEL PEAK 24(12P13.1) WILD-TYPE | 121 | 132 | 114 |
Figure S335. Get High-res Image Gene #52: 'del_12p13.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D52V5.png)
P value = 0.0037 (Fisher's exact test), Q value = 0.0084
Table S336. Gene #52: 'del_12p13.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 24(12P13.1) MUTATED | 31 | 52 | 41 |
DEL PEAK 24(12P13.1) WILD-TYPE | 140 | 153 | 74 |
Figure S336. Get High-res Image Gene #52: 'del_12p13.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D52V6.png)
P value = 8e-05 (Fisher's exact test), Q value = 3e-04
Table S337. Gene #52: 'del_12p13.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 24(12P13.1) MUTATED | 31 | 10 | 18 | 47 | 15 |
DEL PEAK 24(12P13.1) WILD-TYPE | 116 | 88 | 41 | 81 | 41 |
Figure S337. Get High-res Image Gene #52: 'del_12p13.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D52V8.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00036
Table S338. Gene #52: 'del_12p13.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 24(12P13.1) MUTATED | 5 | 41 | 12 | 21 |
DEL PEAK 24(12P13.1) WILD-TYPE | 57 | 65 | 48 | 69 |
Figure S338. Get High-res Image Gene #52: 'del_12p13.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D52V9.png)
P value = 0.00291 (Fisher's exact test), Q value = 0.0067
Table S339. Gene #52: 'del_12p13.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 24(12P13.1) MUTATED | 14 | 4 | 16 | 29 | 3 | 13 |
DEL PEAK 24(12P13.1) WILD-TYPE | 56 | 37 | 24 | 53 | 22 | 47 |
Figure S339. Get High-res Image Gene #52: 'del_12p13.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D52V10.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00023
Table S340. Gene #53: 'del_12q24.32' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 25(12Q24.32) MUTATED | 15 | 25 | 3 |
DEL PEAK 25(12Q24.32) WILD-TYPE | 258 | 109 | 82 |
Figure S340. Get High-res Image Gene #53: 'del_12q24.32' versus Molecular Subtype #1: 'CN_CNMF'
![](D53V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S341. Gene #54: 'del_13q14.13' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 26(13Q14.13) MUTATED | 86 | 90 | 51 |
DEL PEAK 26(13Q14.13) WILD-TYPE | 187 | 44 | 34 |
Figure S341. Get High-res Image Gene #54: 'del_13q14.13' versus Molecular Subtype #1: 'CN_CNMF'
![](D54V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S342. Gene #54: 'del_13q14.13' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 26(13Q14.13) MUTATED | 43 | 98 | 86 |
DEL PEAK 26(13Q14.13) WILD-TYPE | 117 | 67 | 81 |
Figure S342. Get High-res Image Gene #54: 'del_13q14.13' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D54V2.png)
P value = 0.0457 (Fisher's exact test), Q value = 0.069
Table S343. Gene #54: 'del_13q14.13' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
DEL PEAK 26(13Q14.13) MUTATED | 31 | 53 | 34 | 40 |
DEL PEAK 26(13Q14.13) WILD-TYPE | 43 | 60 | 58 | 28 |
Figure S343. Get High-res Image Gene #54: 'del_13q14.13' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D54V4.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00016
Table S344. Gene #54: 'del_13q14.13' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 26(13Q14.13) MUTATED | 45 | 89 | 93 |
DEL PEAK 26(13Q14.13) WILD-TYPE | 101 | 82 | 81 |
Figure S344. Get High-res Image Gene #54: 'del_13q14.13' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D54V5.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00013
Table S345. Gene #54: 'del_13q14.13' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 26(13Q14.13) MUTATED | 56 | 105 | 66 |
DEL PEAK 26(13Q14.13) WILD-TYPE | 115 | 100 | 49 |
Figure S345. Get High-res Image Gene #54: 'del_13q14.13' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D54V6.png)
P value = 5e-05 (Fisher's exact test), Q value = 2e-04
Table S346. Gene #54: 'del_13q14.13' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 26(13Q14.13) MUTATED | 60 | 58 | 108 |
DEL PEAK 26(13Q14.13) WILD-TYPE | 98 | 89 | 75 |
Figure S346. Get High-res Image Gene #54: 'del_13q14.13' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D54V7.png)
P value = 0.00034 (Fisher's exact test), Q value = 0.001
Table S347. Gene #54: 'del_13q14.13' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 26(13Q14.13) MUTATED | 55 | 37 | 25 | 78 | 31 |
DEL PEAK 26(13Q14.13) WILD-TYPE | 92 | 61 | 34 | 50 | 25 |
Figure S347. Get High-res Image Gene #54: 'del_13q14.13' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D54V8.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00042
Table S348. Gene #54: 'del_13q14.13' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 26(13Q14.13) MUTATED | 19 | 66 | 21 | 46 |
DEL PEAK 26(13Q14.13) WILD-TYPE | 43 | 40 | 39 | 44 |
Figure S348. Get High-res Image Gene #54: 'del_13q14.13' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D54V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S349. Gene #54: 'del_13q14.13' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 26(13Q14.13) MUTATED | 19 | 14 | 23 | 53 | 11 | 32 |
DEL PEAK 26(13Q14.13) WILD-TYPE | 51 | 27 | 17 | 29 | 14 | 28 |
Figure S349. Get High-res Image Gene #54: 'del_13q14.13' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D54V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S350. Gene #55: 'del_13q22.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 27(13Q22.1) MUTATED | 56 | 88 | 32 |
DEL PEAK 27(13Q22.1) WILD-TYPE | 217 | 46 | 53 |
Figure S350. Get High-res Image Gene #55: 'del_13q22.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D55V1.png)
P value = 5e-05 (Fisher's exact test), Q value = 2e-04
Table S351. Gene #55: 'del_13q22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 27(13Q22.1) MUTATED | 35 | 74 | 67 |
DEL PEAK 27(13Q22.1) WILD-TYPE | 125 | 91 | 100 |
Figure S351. Get High-res Image Gene #55: 'del_13q22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D55V2.png)
P value = 0.0224 (Fisher's exact test), Q value = 0.038
Table S352. Gene #55: 'del_13q22.1' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 27(13Q22.1) MUTATED | 35 | 21 | 68 |
DEL PEAK 27(13Q22.1) WILD-TYPE | 88 | 47 | 88 |
Figure S352. Get High-res Image Gene #55: 'del_13q22.1' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D55V3.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00036
Table S353. Gene #55: 'del_13q22.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
DEL PEAK 27(13Q22.1) MUTATED | 19 | 40 | 25 | 40 |
DEL PEAK 27(13Q22.1) WILD-TYPE | 55 | 73 | 67 | 28 |
Figure S353. Get High-res Image Gene #55: 'del_13q22.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D55V4.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S354. Gene #55: 'del_13q22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 27(13Q22.1) MUTATED | 29 | 72 | 75 |
DEL PEAK 27(13Q22.1) WILD-TYPE | 117 | 99 | 99 |
Figure S354. Get High-res Image Gene #55: 'del_13q22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D55V5.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00042
Table S355. Gene #55: 'del_13q22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 27(13Q22.1) MUTATED | 40 | 86 | 50 |
DEL PEAK 27(13Q22.1) WILD-TYPE | 131 | 119 | 65 |
Figure S355. Get High-res Image Gene #55: 'del_13q22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D55V6.png)
P value = 0.00503 (Fisher's exact test), Q value = 0.011
Table S356. Gene #55: 'del_13q22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 27(13Q22.1) MUTATED | 46 | 46 | 82 |
DEL PEAK 27(13Q22.1) WILD-TYPE | 112 | 101 | 101 |
Figure S356. Get High-res Image Gene #55: 'del_13q22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D55V7.png)
P value = 0.0012 (Fisher's exact test), Q value = 0.0032
Table S357. Gene #55: 'del_13q22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 27(13Q22.1) MUTATED | 42 | 27 | 19 | 64 | 22 |
DEL PEAK 27(13Q22.1) WILD-TYPE | 105 | 71 | 40 | 64 | 34 |
Figure S357. Get High-res Image Gene #55: 'del_13q22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D55V8.png)
P value = 0.00152 (Fisher's exact test), Q value = 0.0038
Table S358. Gene #55: 'del_13q22.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 27(13Q22.1) MUTATED | 13 | 50 | 17 | 39 |
DEL PEAK 27(13Q22.1) WILD-TYPE | 49 | 56 | 43 | 51 |
Figure S358. Get High-res Image Gene #55: 'del_13q22.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D55V9.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00033
Table S359. Gene #55: 'del_13q22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 27(13Q22.1) MUTATED | 17 | 9 | 22 | 44 | 6 | 21 |
DEL PEAK 27(13Q22.1) WILD-TYPE | 53 | 32 | 18 | 38 | 19 | 39 |
Figure S359. Get High-res Image Gene #55: 'del_13q22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D55V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S360. Gene #56: 'del_15q21.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 28(15Q21.3) MUTATED | 17 | 47 | 3 |
DEL PEAK 28(15Q21.3) WILD-TYPE | 256 | 87 | 82 |
Figure S360. Get High-res Image Gene #56: 'del_15q21.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D56V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S361. Gene #56: 'del_15q21.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 28(15Q21.3) MUTATED | 5 | 29 | 33 |
DEL PEAK 28(15Q21.3) WILD-TYPE | 155 | 136 | 134 |
Figure S361. Get High-res Image Gene #56: 'del_15q21.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D56V2.png)
P value = 0.0335 (Fisher's exact test), Q value = 0.054
Table S362. Gene #56: 'del_15q21.3' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 28(15Q21.3) MUTATED | 8 | 8 | 26 |
DEL PEAK 28(15Q21.3) WILD-TYPE | 115 | 60 | 130 |
Figure S362. Get High-res Image Gene #56: 'del_15q21.3' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D56V3.png)
P value = 0.0461 (Fisher's exact test), Q value = 0.069
Table S363. Gene #56: 'del_15q21.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
DEL PEAK 28(15Q21.3) MUTATED | 3 | 18 | 10 | 11 |
DEL PEAK 28(15Q21.3) WILD-TYPE | 71 | 95 | 82 | 57 |
Figure S363. Get High-res Image Gene #56: 'del_15q21.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D56V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S364. Gene #56: 'del_15q21.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 28(15Q21.3) MUTATED | 3 | 28 | 36 |
DEL PEAK 28(15Q21.3) WILD-TYPE | 143 | 143 | 138 |
Figure S364. Get High-res Image Gene #56: 'del_15q21.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D56V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S365. Gene #56: 'del_15q21.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 28(15Q21.3) MUTATED | 7 | 37 | 23 |
DEL PEAK 28(15Q21.3) WILD-TYPE | 164 | 168 | 92 |
Figure S365. Get High-res Image Gene #56: 'del_15q21.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D56V6.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S366. Gene #56: 'del_15q21.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 28(15Q21.3) MUTATED | 8 | 15 | 42 |
DEL PEAK 28(15Q21.3) WILD-TYPE | 150 | 132 | 141 |
Figure S366. Get High-res Image Gene #56: 'del_15q21.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D56V7.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00023
Table S367. Gene #56: 'del_15q21.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 28(15Q21.3) MUTATED | 7 | 8 | 10 | 28 | 12 |
DEL PEAK 28(15Q21.3) WILD-TYPE | 140 | 90 | 49 | 100 | 44 |
Figure S367. Get High-res Image Gene #56: 'del_15q21.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D56V8.png)
P value = 8e-05 (Fisher's exact test), Q value = 3e-04
Table S368. Gene #56: 'del_15q21.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 28(15Q21.3) MUTATED | 1 | 26 | 5 | 12 |
DEL PEAK 28(15Q21.3) WILD-TYPE | 61 | 80 | 55 | 78 |
Figure S368. Get High-res Image Gene #56: 'del_15q21.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D56V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S369. Gene #56: 'del_15q21.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 28(15Q21.3) MUTATED | 0 | 2 | 14 | 18 | 1 | 9 |
DEL PEAK 28(15Q21.3) WILD-TYPE | 70 | 39 | 26 | 64 | 24 | 51 |
Figure S369. Get High-res Image Gene #56: 'del_15q21.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D56V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S370. Gene #57: 'del_16q22.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 29(16Q22.3) MUTATED | 88 | 93 | 10 |
DEL PEAK 29(16Q22.3) WILD-TYPE | 185 | 41 | 75 |
Figure S370. Get High-res Image Gene #57: 'del_16q22.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D57V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S371. Gene #57: 'del_16q22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 29(16Q22.3) MUTATED | 32 | 72 | 87 |
DEL PEAK 29(16Q22.3) WILD-TYPE | 128 | 93 | 80 |
Figure S371. Get High-res Image Gene #57: 'del_16q22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D57V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S372. Gene #57: 'del_16q22.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 29(16Q22.3) MUTATED | 35 | 60 | 96 |
DEL PEAK 29(16Q22.3) WILD-TYPE | 111 | 111 | 78 |
Figure S372. Get High-res Image Gene #57: 'del_16q22.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D57V5.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00036
Table S373. Gene #57: 'del_16q22.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 29(16Q22.3) MUTATED | 51 | 77 | 63 |
DEL PEAK 29(16Q22.3) WILD-TYPE | 120 | 128 | 52 |
Figure S373. Get High-res Image Gene #57: 'del_16q22.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D57V6.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00016
Table S374. Gene #57: 'del_16q22.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 29(16Q22.3) MUTATED | 56 | 39 | 94 |
DEL PEAK 29(16Q22.3) WILD-TYPE | 102 | 108 | 89 |
Figure S374. Get High-res Image Gene #57: 'del_16q22.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D57V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S375. Gene #57: 'del_16q22.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 29(16Q22.3) MUTATED | 44 | 22 | 28 | 78 | 17 |
DEL PEAK 29(16Q22.3) WILD-TYPE | 103 | 76 | 31 | 50 | 39 |
Figure S375. Get High-res Image Gene #57: 'del_16q22.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D57V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S376. Gene #57: 'del_16q22.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 29(16Q22.3) MUTATED | 10 | 57 | 16 | 31 |
DEL PEAK 29(16Q22.3) WILD-TYPE | 52 | 49 | 44 | 59 |
Figure S376. Get High-res Image Gene #57: 'del_16q22.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D57V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S377. Gene #57: 'del_16q22.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 29(16Q22.3) MUTATED | 16 | 4 | 20 | 46 | 4 | 24 |
DEL PEAK 29(16Q22.3) WILD-TYPE | 54 | 37 | 20 | 36 | 21 | 36 |
Figure S377. Get High-res Image Gene #57: 'del_16q22.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D57V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S378. Gene #58: 'del_16q24.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 30(16Q24.1) MUTATED | 105 | 101 | 7 |
DEL PEAK 30(16Q24.1) WILD-TYPE | 168 | 33 | 78 |
Figure S378. Get High-res Image Gene #58: 'del_16q24.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D58V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S379. Gene #58: 'del_16q24.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 30(16Q24.1) MUTATED | 39 | 79 | 95 |
DEL PEAK 30(16Q24.1) WILD-TYPE | 121 | 86 | 72 |
Figure S379. Get High-res Image Gene #58: 'del_16q24.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D58V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S380. Gene #58: 'del_16q24.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 30(16Q24.1) MUTATED | 44 | 65 | 104 |
DEL PEAK 30(16Q24.1) WILD-TYPE | 102 | 106 | 70 |
Figure S380. Get High-res Image Gene #58: 'del_16q24.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D58V5.png)
P value = 0.00648 (Fisher's exact test), Q value = 0.014
Table S381. Gene #58: 'del_16q24.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 30(16Q24.1) MUTATED | 63 | 86 | 64 |
DEL PEAK 30(16Q24.1) WILD-TYPE | 108 | 119 | 51 |
Figure S381. Get High-res Image Gene #58: 'del_16q24.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D58V6.png)
P value = 0.00027 (Fisher's exact test), Q value = 0.00085
Table S382. Gene #58: 'del_16q24.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 30(16Q24.1) MUTATED | 64 | 47 | 99 |
DEL PEAK 30(16Q24.1) WILD-TYPE | 94 | 100 | 84 |
Figure S382. Get High-res Image Gene #58: 'del_16q24.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D58V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S383. Gene #58: 'del_16q24.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 30(16Q24.1) MUTATED | 50 | 25 | 32 | 86 | 17 |
DEL PEAK 30(16Q24.1) WILD-TYPE | 97 | 73 | 27 | 42 | 39 |
Figure S383. Get High-res Image Gene #58: 'del_16q24.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D58V8.png)
P value = 0.00252 (Fisher's exact test), Q value = 0.0059
Table S384. Gene #58: 'del_16q24.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 30(16Q24.1) MUTATED | 16 | 57 | 21 | 35 |
DEL PEAK 30(16Q24.1) WILD-TYPE | 46 | 49 | 39 | 55 |
Figure S384. Get High-res Image Gene #58: 'del_16q24.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D58V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S385. Gene #58: 'del_16q24.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 30(16Q24.1) MUTATED | 16 | 7 | 22 | 49 | 8 | 27 |
DEL PEAK 30(16Q24.1) WILD-TYPE | 54 | 34 | 18 | 33 | 17 | 33 |
Figure S385. Get High-res Image Gene #58: 'del_16q24.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D58V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S386. Gene #59: 'del_17p13.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 31(17P13.1) MUTATED | 71 | 85 | 7 |
DEL PEAK 31(17P13.1) WILD-TYPE | 202 | 49 | 78 |
Figure S386. Get High-res Image Gene #59: 'del_17p13.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D59V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S387. Gene #59: 'del_17p13.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 31(17P13.1) MUTATED | 32 | 44 | 87 |
DEL PEAK 31(17P13.1) WILD-TYPE | 128 | 121 | 80 |
Figure S387. Get High-res Image Gene #59: 'del_17p13.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D59V2.png)
P value = 0.00379 (Fisher's exact test), Q value = 0.0086
Table S388. Gene #59: 'del_17p13.1' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 31(17P13.1) MUTATED | 35 | 14 | 65 |
DEL PEAK 31(17P13.1) WILD-TYPE | 88 | 54 | 91 |
Figure S388. Get High-res Image Gene #59: 'del_17p13.1' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D59V3.png)
P value = 0.0281 (Fisher's exact test), Q value = 0.046
Table S389. Gene #59: 'del_17p13.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
DEL PEAK 31(17P13.1) MUTATED | 22 | 33 | 26 | 33 |
DEL PEAK 31(17P13.1) WILD-TYPE | 52 | 80 | 66 | 35 |
Figure S389. Get High-res Image Gene #59: 'del_17p13.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D59V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S390. Gene #59: 'del_17p13.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 31(17P13.1) MUTATED | 27 | 37 | 99 |
DEL PEAK 31(17P13.1) WILD-TYPE | 119 | 134 | 75 |
Figure S390. Get High-res Image Gene #59: 'del_17p13.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D59V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S391. Gene #59: 'del_17p13.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 31(17P13.1) MUTATED | 38 | 54 | 71 |
DEL PEAK 31(17P13.1) WILD-TYPE | 133 | 151 | 44 |
Figure S391. Get High-res Image Gene #59: 'del_17p13.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D59V6.png)
P value = 0.00014 (Fisher's exact test), Q value = 0.00049
Table S392. Gene #59: 'del_17p13.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 31(17P13.1) MUTATED | 46 | 34 | 81 |
DEL PEAK 31(17P13.1) WILD-TYPE | 112 | 113 | 102 |
Figure S392. Get High-res Image Gene #59: 'del_17p13.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D59V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S393. Gene #59: 'del_17p13.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 31(17P13.1) MUTATED | 36 | 15 | 34 | 60 | 16 |
DEL PEAK 31(17P13.1) WILD-TYPE | 111 | 83 | 25 | 68 | 40 |
Figure S393. Get High-res Image Gene #59: 'del_17p13.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D59V8.png)
P value = 0.0013 (Fisher's exact test), Q value = 0.0033
Table S394. Gene #59: 'del_17p13.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 31(17P13.1) MUTATED | 14 | 52 | 15 | 32 |
DEL PEAK 31(17P13.1) WILD-TYPE | 48 | 54 | 45 | 58 |
Figure S394. Get High-res Image Gene #59: 'del_17p13.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D59V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S395. Gene #59: 'del_17p13.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 31(17P13.1) MUTATED | 16 | 3 | 28 | 40 | 8 | 18 |
DEL PEAK 31(17P13.1) WILD-TYPE | 54 | 38 | 12 | 42 | 17 | 42 |
Figure S395. Get High-res Image Gene #59: 'del_17p13.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D59V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S396. Gene #60: 'del_17q21.31' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 32(17Q21.31) MUTATED | 52 | 41 | 3 |
DEL PEAK 32(17Q21.31) WILD-TYPE | 221 | 93 | 82 |
Figure S396. Get High-res Image Gene #60: 'del_17q21.31' versus Molecular Subtype #1: 'CN_CNMF'
![](D60V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S397. Gene #60: 'del_17q21.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 32(17Q21.31) MUTATED | 21 | 17 | 58 |
DEL PEAK 32(17Q21.31) WILD-TYPE | 139 | 148 | 109 |
Figure S397. Get High-res Image Gene #60: 'del_17q21.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D60V2.png)
P value = 0.0347 (Fisher's exact test), Q value = 0.055
Table S398. Gene #60: 'del_17q21.31' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
DEL PEAK 32(17Q21.31) MUTATED | 20 | 28 | 12 | 9 |
DEL PEAK 32(17Q21.31) WILD-TYPE | 54 | 85 | 80 | 59 |
Figure S398. Get High-res Image Gene #60: 'del_17q21.31' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D60V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S399. Gene #60: 'del_17q21.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 32(17Q21.31) MUTATED | 19 | 14 | 63 |
DEL PEAK 32(17Q21.31) WILD-TYPE | 127 | 157 | 111 |
Figure S399. Get High-res Image Gene #60: 'del_17q21.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D60V5.png)
P value = 0.00016 (Fisher's exact test), Q value = 0.00054
Table S400. Gene #60: 'del_17q21.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 32(17Q21.31) MUTATED | 33 | 26 | 37 |
DEL PEAK 32(17Q21.31) WILD-TYPE | 138 | 179 | 78 |
Figure S400. Get High-res Image Gene #60: 'del_17q21.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D60V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S401. Gene #61: 'del_18q21.31' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 33(18Q21.31) MUTATED | 45 | 72 | 14 |
DEL PEAK 33(18Q21.31) WILD-TYPE | 228 | 62 | 71 |
Figure S401. Get High-res Image Gene #61: 'del_18q21.31' versus Molecular Subtype #1: 'CN_CNMF'
![](D61V1.png)
P value = 0.00216 (Fisher's exact test), Q value = 0.0052
Table S402. Gene #61: 'del_18q21.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 33(18Q21.31) MUTATED | 27 | 54 | 50 |
DEL PEAK 33(18Q21.31) WILD-TYPE | 133 | 111 | 117 |
Figure S402. Get High-res Image Gene #61: 'del_18q21.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D61V2.png)
P value = 0.00623 (Fisher's exact test), Q value = 0.013
Table S403. Gene #61: 'del_18q21.31' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 33(18Q21.31) MUTATED | 23 | 12 | 52 |
DEL PEAK 33(18Q21.31) WILD-TYPE | 100 | 56 | 104 |
Figure S403. Get High-res Image Gene #61: 'del_18q21.31' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D61V3.png)
P value = 0.0023 (Fisher's exact test), Q value = 0.0055
Table S404. Gene #61: 'del_18q21.31' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
DEL PEAK 33(18Q21.31) MUTATED | 14 | 28 | 16 | 29 |
DEL PEAK 33(18Q21.31) WILD-TYPE | 60 | 85 | 76 | 39 |
Figure S404. Get High-res Image Gene #61: 'del_18q21.31' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D61V4.png)
P value = 0.00018 (Fisher's exact test), Q value = 6e-04
Table S405. Gene #61: 'del_18q21.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 33(18Q21.31) MUTATED | 21 | 53 | 57 |
DEL PEAK 33(18Q21.31) WILD-TYPE | 125 | 118 | 117 |
Figure S405. Get High-res Image Gene #61: 'del_18q21.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D61V5.png)
P value = 0.012 (Fisher's exact test), Q value = 0.023
Table S406. Gene #61: 'del_18q21.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 33(18Q21.31) MUTATED | 32 | 63 | 36 |
DEL PEAK 33(18Q21.31) WILD-TYPE | 139 | 142 | 79 |
Figure S406. Get High-res Image Gene #61: 'del_18q21.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D61V6.png)
P value = 0.00022 (Fisher's exact test), Q value = 0.00071
Table S407. Gene #61: 'del_18q21.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 33(18Q21.31) MUTATED | 31 | 30 | 68 |
DEL PEAK 33(18Q21.31) WILD-TYPE | 127 | 117 | 115 |
Figure S407. Get High-res Image Gene #61: 'del_18q21.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D61V7.png)
P value = 0.0186 (Fisher's exact test), Q value = 0.033
Table S408. Gene #61: 'del_18q21.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 33(18Q21.31) MUTATED | 29 | 20 | 20 | 45 | 15 |
DEL PEAK 33(18Q21.31) WILD-TYPE | 118 | 78 | 39 | 83 | 41 |
Figure S408. Get High-res Image Gene #61: 'del_18q21.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D61V8.png)
P value = 0.00398 (Fisher's exact test), Q value = 0.0089
Table S409. Gene #61: 'del_18q21.31' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 33(18Q21.31) MUTATED | 9 | 41 | 12 | 24 |
DEL PEAK 33(18Q21.31) WILD-TYPE | 53 | 65 | 48 | 66 |
Figure S409. Get High-res Image Gene #61: 'del_18q21.31' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D61V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S410. Gene #61: 'del_18q21.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 33(18Q21.31) MUTATED | 9 | 4 | 21 | 33 | 5 | 14 |
DEL PEAK 33(18Q21.31) WILD-TYPE | 61 | 37 | 19 | 49 | 20 | 46 |
Figure S410. Get High-res Image Gene #61: 'del_18q21.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D61V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S411. Gene #62: 'del_18q23' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 34(18Q23) MUTATED | 48 | 77 | 12 |
DEL PEAK 34(18Q23) WILD-TYPE | 225 | 57 | 73 |
Figure S411. Get High-res Image Gene #62: 'del_18q23' versus Molecular Subtype #1: 'CN_CNMF'
![](D62V1.png)
P value = 0.0106 (Fisher's exact test), Q value = 0.021
Table S412. Gene #62: 'del_18q23' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 34(18Q23) MUTATED | 31 | 50 | 56 |
DEL PEAK 34(18Q23) WILD-TYPE | 129 | 115 | 111 |
Figure S412. Get High-res Image Gene #62: 'del_18q23' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D62V2.png)
P value = 0.0423 (Fisher's exact test), Q value = 0.065
Table S413. Gene #62: 'del_18q23' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 74 | 113 | 92 | 68 |
DEL PEAK 34(18Q23) MUTATED | 18 | 31 | 18 | 27 |
DEL PEAK 34(18Q23) WILD-TYPE | 56 | 82 | 74 | 41 |
Figure S413. Get High-res Image Gene #62: 'del_18q23' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D62V4.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00026
Table S414. Gene #62: 'del_18q23' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 34(18Q23) MUTATED | 23 | 49 | 65 |
DEL PEAK 34(18Q23) WILD-TYPE | 123 | 122 | 109 |
Figure S414. Get High-res Image Gene #62: 'del_18q23' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D62V5.png)
P value = 0.0443 (Fisher's exact test), Q value = 0.067
Table S415. Gene #62: 'del_18q23' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 34(18Q23) MUTATED | 37 | 60 | 40 |
DEL PEAK 34(18Q23) WILD-TYPE | 134 | 145 | 75 |
Figure S415. Get High-res Image Gene #62: 'del_18q23' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D62V6.png)
P value = 0.011 (Fisher's exact test), Q value = 0.021
Table S416. Gene #62: 'del_18q23' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 34(18Q23) MUTATED | 35 | 35 | 65 |
DEL PEAK 34(18Q23) WILD-TYPE | 123 | 112 | 118 |
Figure S416. Get High-res Image Gene #62: 'del_18q23' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D62V7.png)
P value = 0.00725 (Fisher's exact test), Q value = 0.015
Table S417. Gene #62: 'del_18q23' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 34(18Q23) MUTATED | 29 | 21 | 22 | 46 | 17 |
DEL PEAK 34(18Q23) WILD-TYPE | 118 | 77 | 37 | 82 | 39 |
Figure S417. Get High-res Image Gene #62: 'del_18q23' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D62V8.png)
P value = 0.00859 (Fisher's exact test), Q value = 0.017
Table S418. Gene #62: 'del_18q23' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 34(18Q23) MUTATED | 11 | 40 | 11 | 29 |
DEL PEAK 34(18Q23) WILD-TYPE | 51 | 66 | 49 | 61 |
Figure S418. Get High-res Image Gene #62: 'del_18q23' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D62V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S419. Gene #62: 'del_18q23' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 34(18Q23) MUTATED | 11 | 3 | 21 | 32 | 6 | 18 |
DEL PEAK 34(18Q23) WILD-TYPE | 59 | 38 | 19 | 50 | 19 | 42 |
Figure S419. Get High-res Image Gene #62: 'del_18q23' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D62V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S420. Gene #63: 'del_19q13.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 35(19Q13.2) MUTATED | 14 | 32 | 6 |
DEL PEAK 35(19Q13.2) WILD-TYPE | 259 | 102 | 79 |
Figure S420. Get High-res Image Gene #63: 'del_19q13.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D63V1.png)
P value = 0.00126 (Fisher's exact test), Q value = 0.0032
Table S421. Gene #63: 'del_19q13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 35(19Q13.2) MUTATED | 6 | 24 | 22 |
DEL PEAK 35(19Q13.2) WILD-TYPE | 154 | 141 | 145 |
Figure S421. Get High-res Image Gene #63: 'del_19q13.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D63V2.png)
P value = 0.00539 (Fisher's exact test), Q value = 0.012
Table S422. Gene #63: 'del_19q13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 35(19Q13.2) MUTATED | 6 | 22 | 24 |
DEL PEAK 35(19Q13.2) WILD-TYPE | 140 | 149 | 150 |
Figure S422. Get High-res Image Gene #63: 'del_19q13.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D63V5.png)
P value = 0.049 (Fisher's exact test), Q value = 0.072
Table S423. Gene #63: 'del_19q13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 35(19Q13.2) MUTATED | 11 | 29 | 12 |
DEL PEAK 35(19Q13.2) WILD-TYPE | 160 | 176 | 103 |
Figure S423. Get High-res Image Gene #63: 'del_19q13.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D63V6.png)
P value = 0.00262 (Fisher's exact test), Q value = 0.0061
Table S424. Gene #63: 'del_19q13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 35(19Q13.2) MUTATED | 12 | 8 | 30 |
DEL PEAK 35(19Q13.2) WILD-TYPE | 146 | 139 | 153 |
Figure S424. Get High-res Image Gene #63: 'del_19q13.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D63V7.png)
P value = 0.00079 (Fisher's exact test), Q value = 0.0022
Table S425. Gene #63: 'del_19q13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 35(19Q13.2) MUTATED | 6 | 7 | 13 | 19 | 5 |
DEL PEAK 35(19Q13.2) WILD-TYPE | 141 | 91 | 46 | 109 | 51 |
Figure S425. Get High-res Image Gene #63: 'del_19q13.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D63V8.png)
P value = 0.00223 (Fisher's exact test), Q value = 0.0053
Table S426. Gene #63: 'del_19q13.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 106 | 60 | 90 |
DEL PEAK 35(19Q13.2) MUTATED | 2 | 20 | 2 | 9 |
DEL PEAK 35(19Q13.2) WILD-TYPE | 60 | 86 | 58 | 81 |
Figure S426. Get High-res Image Gene #63: 'del_19q13.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D63V9.png)
P value = 0.00125 (Fisher's exact test), Q value = 0.0032
Table S427. Gene #63: 'del_19q13.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 35(19Q13.2) MUTATED | 1 | 2 | 5 | 18 | 2 | 5 |
DEL PEAK 35(19Q13.2) WILD-TYPE | 69 | 39 | 35 | 64 | 23 | 55 |
Figure S427. Get High-res Image Gene #63: 'del_19q13.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D63V10.png)
P value = 0.00042 (Fisher's exact test), Q value = 0.0012
Table S428. Gene #64: 'del_21q22.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 36(21Q22.2) MUTATED | 29 | 22 | 1 |
DEL PEAK 36(21Q22.2) WILD-TYPE | 244 | 112 | 84 |
Figure S428. Get High-res Image Gene #64: 'del_21q22.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D64V1.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00033
Table S429. Gene #64: 'del_21q22.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 36(21Q22.2) MUTATED | 11 | 9 | 32 |
DEL PEAK 36(21Q22.2) WILD-TYPE | 149 | 156 | 135 |
Figure S429. Get High-res Image Gene #64: 'del_21q22.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D64V2.png)
P value = 0.0352 (Fisher's exact test), Q value = 0.056
Table S430. Gene #64: 'del_21q22.2' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 36(21Q22.2) MUTATED | 7 | 7 | 24 |
DEL PEAK 36(21Q22.2) WILD-TYPE | 116 | 61 | 132 |
Figure S430. Get High-res Image Gene #64: 'del_21q22.2' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D64V3.png)
P value = 2e-05 (Fisher's exact test), Q value = 8.8e-05
Table S431. Gene #64: 'del_21q22.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 36(21Q22.2) MUTATED | 11 | 7 | 34 |
DEL PEAK 36(21Q22.2) WILD-TYPE | 135 | 164 | 140 |
Figure S431. Get High-res Image Gene #64: 'del_21q22.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D64V5.png)
P value = 0.00026 (Fisher's exact test), Q value = 0.00082
Table S432. Gene #64: 'del_21q22.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 36(21Q22.2) MUTATED | 12 | 15 | 25 |
DEL PEAK 36(21Q22.2) WILD-TYPE | 159 | 190 | 90 |
Figure S432. Get High-res Image Gene #64: 'del_21q22.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D64V6.png)
P value = 0.0391 (Fisher's exact test), Q value = 0.06
Table S433. Gene #64: 'del_21q22.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 36(21Q22.2) MUTATED | 11 | 7 | 13 | 15 | 5 |
DEL PEAK 36(21Q22.2) WILD-TYPE | 136 | 91 | 46 | 113 | 51 |
Figure S433. Get High-res Image Gene #64: 'del_21q22.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D64V8.png)
P value = 0.00289 (Fisher's exact test), Q value = 0.0067
Table S434. Gene #64: 'del_21q22.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 36(21Q22.2) MUTATED | 4 | 2 | 13 | 9 | 3 | 6 |
DEL PEAK 36(21Q22.2) WILD-TYPE | 66 | 39 | 27 | 73 | 22 | 54 |
Figure S434. Get High-res Image Gene #64: 'del_21q22.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D64V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S435. Gene #65: 'del_21q22.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 134 | 85 |
DEL PEAK 37(21Q22.3) MUTATED | 95 | 49 | 3 |
DEL PEAK 37(21Q22.3) WILD-TYPE | 178 | 85 | 82 |
Figure S435. Get High-res Image Gene #65: 'del_21q22.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D65V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S436. Gene #65: 'del_21q22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 160 | 165 | 167 |
DEL PEAK 37(21Q22.3) MUTATED | 30 | 13 | 104 |
DEL PEAK 37(21Q22.3) WILD-TYPE | 130 | 152 | 63 |
Figure S436. Get High-res Image Gene #65: 'del_21q22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D65V2.png)
P value = 0.0152 (Fisher's exact test), Q value = 0.028
Table S437. Gene #65: 'del_21q22.3' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 123 | 68 | 156 |
DEL PEAK 37(21Q22.3) MUTATED | 27 | 22 | 59 |
DEL PEAK 37(21Q22.3) WILD-TYPE | 96 | 46 | 97 |
Figure S437. Get High-res Image Gene #65: 'del_21q22.3' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D65V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S438. Gene #65: 'del_21q22.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 171 | 174 |
DEL PEAK 37(21Q22.3) MUTATED | 26 | 12 | 109 |
DEL PEAK 37(21Q22.3) WILD-TYPE | 120 | 159 | 65 |
Figure S438. Get High-res Image Gene #65: 'del_21q22.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D65V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S439. Gene #65: 'del_21q22.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 205 | 115 |
DEL PEAK 37(21Q22.3) MUTATED | 43 | 21 | 83 |
DEL PEAK 37(21Q22.3) WILD-TYPE | 128 | 184 | 32 |
Figure S439. Get High-res Image Gene #65: 'del_21q22.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D65V6.png)
P value = 0.0325 (Fisher's exact test), Q value = 0.052
Table S440. Gene #65: 'del_21q22.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 158 | 147 | 183 |
DEL PEAK 37(21Q22.3) MUTATED | 50 | 32 | 63 |
DEL PEAK 37(21Q22.3) WILD-TYPE | 108 | 115 | 120 |
Figure S440. Get High-res Image Gene #65: 'del_21q22.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D65V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S441. Gene #65: 'del_21q22.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 147 | 98 | 59 | 128 | 56 |
DEL PEAK 37(21Q22.3) MUTATED | 44 | 15 | 33 | 39 | 14 |
DEL PEAK 37(21Q22.3) WILD-TYPE | 103 | 83 | 26 | 89 | 42 |
Figure S441. Get High-res Image Gene #65: 'del_21q22.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D65V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 5e-05
Table S442. Gene #65: 'del_21q22.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 70 | 41 | 40 | 82 | 25 | 60 |
DEL PEAK 37(21Q22.3) MUTATED | 17 | 3 | 26 | 19 | 13 | 19 |
DEL PEAK 37(21Q22.3) WILD-TYPE | 53 | 38 | 14 | 63 | 12 | 41 |
Figure S442. Get High-res Image Gene #65: 'del_21q22.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D65V10.png)
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Copy number data file = all_lesions.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/19782426/transformed.cor.cli.txt
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Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PRAD-TP/20168456/PRAD-TP.transferedmergedcluster.txt
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Number of patients = 492
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Number of significantly focal cnvs = 65
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Number of molecular subtypes = 10
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Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.