name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-AF-2687-01A-02D-1733-10	197	194	3	146	1.522843e-02	0	coding only	34834024	45	138	1.291840e-06	3.961644e-06
TCGA-AF-2689-01A-01W-0831-10	63	63	0	45	0	0	coding only	34834024	18	40	5.167362e-07	1.148303e-06
TCGA-AF-2691-01A-01W-0831-10	71	70	1	57	1.408451e-02	0	coding only	34834024	13	51	3.731983e-07	1.464086e-06
TCGA-AF-2692-01A-01W-0831-10	40	40	0	30	0	0	coding only	34834024	10	28	2.870756e-07	8.038118e-07
TCGA-AF-2693-01A-02D-1733-10	253	251	2	187	7.905138e-03	0	coding only	34834024	61	177	1.751161e-06	5.081239e-06
TCGA-AF-3400-01A-01W-0831-10	30	29	1	20	3.333333e-02	0	coding only	34834024	9	19	2.583681e-07	5.454437e-07
TCGA-AF-3913-01A-02W-1073-09	114	112	2	82	1.754386e-02	0	coding only	34834024	30	78	8.612269e-07	2.239190e-06
TCGA-AF-4110-01A-02D-1733-10	138	134	4	95	2.898551e-02	0	coding only	34834024	37	91	1.062180e-06	2.612388e-06
TCGA-AF-5654-01A-01D-1657-10	183	176	7	139	3.825137e-02	1	exome+100bp flanks	34834024	35	131	1.004765e-06	3.760691e-06
TCGA-AF-6136-01A-11D-1826-10	200	196	4	135	2.000000e-02	0	coding only	34834024	58	129	1.665039e-06	3.703276e-06
TCGA-AF-6655-01A-11D-1826-10	142	141	1	113	7.042254e-03	0	coding only	34834024	26	107	7.463967e-07	3.071709e-06
TCGA-AF-6672-01A-11D-1826-10	150	148	2	105	1.333333e-02	0	coding only	34834024	40	96	1.148303e-06	2.755926e-06
TCGA-AG-3574-01A-01W-0831-10	41	41	0	30	0	0	coding only	34834024	11	30	3.157832e-07	8.612269e-07
TCGA-AG-3575-01A-01W-0831-10	51	50	1	42	1.960784e-02	0	coding only	34834024	8	39	2.296605e-07	1.119595e-06
TCGA-AG-3578-01A-01W-0831-10	26	26	0	23	0	0	coding only	34834024	3	23	8.612269e-08	6.602740e-07
TCGA-AG-3580-01A-01W-0831-10	42	42	0	31	0	0	coding only	34834024	11	27	3.157832e-07	7.751042e-07
TCGA-AG-3581-01A-01W-0831-10	54	52	2	36	3.703704e-02	0	coding only	34834024	16	34	4.593210e-07	9.760572e-07
TCGA-AG-3582-01A-01W-0831-10	35	35	0	29	0	0	coding only	34834024	5	29	1.435378e-07	8.325194e-07
TCGA-AG-3583-01A-01W-0831-10	59	59	0	46	0	0	coding only	34834024	13	45	3.731983e-07	1.291840e-06
TCGA-AG-3584-01A-01W-0831-10	33	33	0	28	0	0	coding only	34834024	5	26	1.435378e-07	7.463967e-07
TCGA-AG-3586-01A-02W-0831-10	67	67	0	36	0	0	coding only	34834024	31	35	8.899345e-07	1.004765e-06
TCGA-AG-3587-01A-01W-0831-10	68	67	1	51	1.470588e-02	0	coding only	34834024	16	49	4.593210e-07	1.406671e-06
TCGA-AG-3593-01A-01W-0831-10	76	76	0	58	0	0	coding only	34834024	18	55	5.167362e-07	1.578916e-06
TCGA-AG-3594-01A-02W-0831-10	42	42	0	29	0	0	coding only	34834024	12	28	3.444908e-07	8.038118e-07
TCGA-AG-3598-01A-01W-0833-10	72	70	2	54	2.777778e-02	0	coding only	34834024	16	54	4.593210e-07	1.550208e-06
TCGA-AG-3599-01A-02W-0833-10	67	66	1	52	1.492537e-02	0	coding only	34834024	14	51	4.019059e-07	1.464086e-06
TCGA-AG-3600-01A-01W-0833-10	96	95	1	75	1.041667e-02	0	coding only	34834024	20	69	5.741513e-07	1.980822e-06
TCGA-AG-3601-01A-01W-0833-10	107	106	1	77	9.345794e-03	0	coding only	34834024	26	74	7.463967e-07	2.124360e-06
TCGA-AG-3602-01A-02W-0833-10	47	46	1	34	2.127660e-02	0	coding only	34834024	12	32	3.444908e-07	9.186421e-07
TCGA-AG-3605-01A-01W-0833-10	60	59	1	40	1.666667e-02	0	coding only	34834024	19	38	5.454437e-07	1.090887e-06
TCGA-AG-3608-01A-01W-0833-10	58	58	0	44	0	0	coding only	34834024	13	40	3.731983e-07	1.148303e-06
TCGA-AG-3609-01A-02W-0833-10	91	91	0	62	0	0	coding only	34834024	27	59	7.751042e-07	1.693746e-06
TCGA-AG-3611-01A-01W-0833-10	51	51	0	37	0	0	coding only	34834024	14	37	4.019059e-07	1.062180e-06
TCGA-AG-3612-01A-01W-0833-10	72	71	1	51	1.388889e-02	0	coding only	34834024	20	51	5.741513e-07	1.464086e-06
TCGA-AG-3726-01A-02W-0899-10	133	132	1	106	7.518797e-03	0	coding only	34834024	23	102	6.602740e-07	2.928172e-06
TCGA-AG-3727-01A-01W-0899-10	80	79	1	65	1.250000e-02	0	coding only	34834024	14	62	4.019059e-07	1.779869e-06
TCGA-AG-3731-01A-11D-1733-10	215	211	4	164	1.860465e-02	0	coding only	34834024	45	155	1.291840e-06	4.449673e-06
TCGA-AG-3732-01A-11D-1657-10	172	172	0	123	0	0	coding only	34834024	45	114	1.291840e-06	3.272662e-06
TCGA-AG-3742-01A-11D-1657-10	228	224	4	165	1.754386e-02	0	coding only	34834024	56	153	1.607624e-06	4.392257e-06
TCGA-AG-3878-01A-02W-0899-10	80	79	1	65	1.250000e-02	0	coding only	34834024	12	62	3.444908e-07	1.779869e-06
TCGA-AG-3881-01A-01W-0899-10	98	98	0	74	0	0	coding only	34834024	24	68	6.889816e-07	1.952114e-06
TCGA-AG-3882-01A-01W-0899-10	61	61	0	50	0	0	coding only	34834024	10	47	2.870756e-07	1.349256e-06
TCGA-AG-3883-01A-02W-0899-10	126	123	3	90	2.380952e-02	0	coding only	34834024	31	85	8.899345e-07	2.440143e-06
TCGA-AG-3885-01A-01W-0899-10	201	196	5	140	2.487562e-02	0	coding only	34834024	52	127	1.492793e-06	3.645861e-06
TCGA-AG-3887-01A-01W-1073-09	77	75	2	58	2.597403e-02	0	coding only	34834024	17	55	4.880286e-07	1.578916e-06
TCGA-AG-3890-01A-01W-1073-09	79	76	3	60	3.797468e-02	0	coding only	34834024	13	57	3.731983e-07	1.636331e-06
TCGA-AG-3892-01A-01W-1073-09	2195	2155	40	1791	1.822323e-02	0	coding only	34834024	345	1693	9.904110e-06	4.860191e-05
TCGA-AG-3893-01A-01W-1073-09	115	113	2	84	1.739130e-02	0	coding only	34834024	28	80	8.038118e-07	2.296605e-06
TCGA-AG-3894-01A-01W-1073-09	105	100	5	74	4.761905e-02	1	exome+100bp flanks	34834024	24	69	6.889816e-07	1.980822e-06
TCGA-AG-3896-01A-01W-1073-09	106	105	1	79	9.433962e-03	0	coding only	34834024	26	73	7.463967e-07	2.095652e-06
TCGA-AG-3898-01A-01W-1073-09	110	107	3	75	2.727273e-02	0	coding only	34834024	32	72	9.186421e-07	2.066945e-06
TCGA-AG-3901-01A-01W-1073-09	66	63	3	44	4.545455e-02	0	coding only	34834024	19	44	5.454437e-07	1.263133e-06
TCGA-AG-3902-01A-01W-1073-09	136	134	2	101	1.470588e-02	0	coding only	34834024	31	96	8.899345e-07	2.755926e-06
TCGA-AG-3909-01A-01W-1073-09	86	84	2	69	2.325581e-02	0	coding only	34834024	14	66	4.019059e-07	1.894699e-06
TCGA-AG-3999-01A-01W-1073-09	97	94	3	74	3.092784e-02	0	coding only	34834024	19	69	5.454437e-07	1.980822e-06
TCGA-AG-4001-01A-02W-1073-09	125	123	2	89	1.600000e-02	0	coding only	34834024	32	88	9.186421e-07	2.526266e-06
TCGA-AG-4005-01A-01W-1073-09	120	117	3	78	2.500000e-02	0	coding only	34834024	35	74	1.004765e-06	2.124360e-06
TCGA-AG-4007-01A-01W-1073-09	166	160	6	123	3.614458e-02	1	exome+100bp flanks	34834024	34	116	9.760572e-07	3.330078e-06
TCGA-AG-4008-01A-01W-1073-09	77	76	1	60	1.298701e-02	0	coding only	34834024	15	55	4.306135e-07	1.578916e-06
TCGA-AG-4015-01A-01W-1073-09	97	97	0	76	0	0	coding only	34834024	19	74	5.454437e-07	2.124360e-06
TCGA-AG-A002-01A-01W-A00K-09	12386	12171	215	9761	1.735831e-02	0	coding only	34834024	2294	9214	6.585515e-05	2.645115e-04
TCGA-AG-A008-01A-01W-A005-10	49	49	0	39	0	0	coding only	34834024	9	38	2.583681e-07	1.090887e-06
TCGA-AG-A00C-01A-01W-A005-10	69	69	0	52	0	0	coding only	34834024	16	50	4.593210e-07	1.435378e-06
TCGA-AG-A00H-01A-01W-A00E-09	75	74	1	53	1.333333e-02	0	coding only	34834024	19	50	5.454437e-07	1.435378e-06
TCGA-AG-A00Y-01A-02W-A005-10	156	154	2	80	1.282051e-02	0	coding only	34834024	73	80	2.095652e-06	2.296605e-06
TCGA-AG-A011-01A-01W-A00K-09	112	112	0	87	0	0	coding only	34834024	22	85	6.315664e-07	2.440143e-06
TCGA-AG-A014-01A-02W-A00K-09	125	123	2	100	1.600000e-02	0	coding only	34834024	22	93	6.315664e-07	2.669804e-06
TCGA-AG-A015-01A-01W-A005-10	64	64	0	52	0	0	coding only	34834024	11	49	3.157832e-07	1.406671e-06
TCGA-AG-A016-01A-01W-A005-10	58	56	2	38	3.448276e-02	0	coding only	34834024	16	37	4.593210e-07	1.062180e-06
TCGA-AG-A01L-01A-01W-A00K-09	75	72	3	57	4.000000e-02	0	coding only	34834024	15	51	4.306135e-07	1.464086e-06
TCGA-AG-A01W-01A-21W-A096-10	127	125	2	96	1.574803e-02	0	coding only	34834024	29	89	8.325194e-07	2.554973e-06
TCGA-AG-A01Y-01A-41W-A096-10	92	90	2	66	2.173913e-02	0	coding only	34834024	23	62	6.602740e-07	1.779869e-06
TCGA-AG-A020-01A-21W-A096-10	78	77	1	58	1.282051e-02	0	coding only	34834024	18	54	5.167362e-07	1.550208e-06
TCGA-AG-A025-01A-01W-A00E-09	94	93	1	65	1.063830e-02	0	coding only	34834024	26	62	7.463967e-07	1.779869e-06
TCGA-AG-A026-01A-32W-A096-10	218	214	4	167	1.834862e-02	0	coding only	34834024	43	158	1.234425e-06	4.535795e-06
TCGA-AG-A02G-01A-01W-A00E-09	52	51	1	38	1.923077e-02	0	coding only	34834024	13	35	3.731983e-07	1.004765e-06
TCGA-AG-A02N-01A-11W-A096-10	1231	1203	28	882	2.274574e-02	0	coding only	34834024	309	844	8.870638e-06	2.422918e-05
TCGA-AG-A02X-01A-01W-A00E-09	140	140	0	96	0	0	coding only	34834024	42	88	1.205718e-06	2.526266e-06
TCGA-AG-A032-01A-01W-A00E-09	80	79	1	60	1.250000e-02	0	coding only	34834024	17	57	4.880286e-07	1.636331e-06
TCGA-AG-A036-01A-12W-A096-10	150	148	2	107	1.333333e-02	0	coding only	34834024	39	102	1.119595e-06	2.928172e-06
TCGA-AH-6544-01A-11D-1826-10	192	189	3	133	1.562500e-02	0	coding only	34834024	51	125	1.464086e-06	3.588446e-06
TCGA-AH-6547-01A-11D-1826-10	45	43	2	29	4.444444e-02	0	coding only	34834024	12	28	3.444908e-07	8.038118e-07
TCGA-AH-6549-01A-11D-1826-10	140	136	4	89	2.857143e-02	0	coding only	34834024	44	83	1.263133e-06	2.382728e-06
TCGA-AH-6643-01A-11D-1826-10	195	192	3	131	1.538462e-02	0	coding only	34834024	59	128	1.693746e-06	3.674568e-06
TCGA-AH-6644-01A-21D-1826-10	145	143	2	114	1.379310e-02	0	coding only	34834024	25	105	7.176891e-07	3.014294e-06
TCGA-CI-6619-01B-11D-1826-10	149	143	6	98	4.026846e-02	1	exome+100bp flanks	34834024	42	90	1.205718e-06	2.583681e-06
TCGA-CI-6620-01A-11D-1826-10	130	128	2	91	1.538462e-02	0	coding only	34834024	37	85	1.062180e-06	2.440143e-06
TCGA-CI-6621-01A-11D-1826-10	119	118	1	87	8.403361e-03	0	coding only	34834024	30	83	8.612269e-07	2.382728e-06
TCGA-CI-6622-01A-11D-1826-10	180	176	4	127	2.222222e-02	0	coding only	34834024	45	120	1.291840e-06	3.444908e-06
TCGA-CI-6624-01C-11D-1826-10	307	303	4	226	1.302932e-02	0	coding only	34834024	76	215	2.181775e-06	6.172126e-06
TCGA-CL-5917-01A-11D-1657-10	209	205	4	138	1.913876e-02	0	coding only	34834024	66	128	1.894699e-06	3.674568e-06
TCGA-CL-5918-01A-11D-1657-10	234	222	12	149	5.128205e-02	1	exome+100bp flanks	34834024	71	144	2.038237e-06	4.133889e-06
TCGA-DC-5337-01A-01D-1657-10	291	287	4	209	1.374570e-02	0	coding only	34834024	74	198	2.124360e-06	5.684098e-06
TCGA-DC-5869-01A-01D-1657-10	195	190	5	126	2.564103e-02	0	coding only	34834024	59	114	1.693746e-06	3.272662e-06
TCGA-DC-6155-01A-11D-1657-10	145	141	4	97	2.758621e-02	0	coding only	34834024	40	90	1.148303e-06	2.583681e-06
TCGA-DC-6157-01A-11D-1657-10	189	181	8	138	4.232804e-02	1	exome+100bp flanks	34834024	39	133	1.119595e-06	3.818106e-06
TCGA-DC-6158-01A-11D-1657-10	158	158	0	116	0	0	coding only	34834024	41	110	1.177010e-06	3.157832e-06
TCGA-DC-6160-01A-11D-1657-10	199	194	5	140	2.512563e-02	0	coding only	34834024	50	131	1.435378e-06	3.760691e-06
TCGA-DC-6681-01A-11D-1826-10	184	176	8	115	4.347826e-02	1	exome+100bp flanks	34834024	60	106	1.722454e-06	3.043002e-06
TCGA-DC-6682-01A-11D-1826-10	207	201	6	146	2.898551e-02	0	coding only	34834024	52	138	1.492793e-06	3.961644e-06
TCGA-DC-6683-01A-11D-1826-10	126	123	3	85	2.380952e-02	0	coding only	34834024	36	80	1.033472e-06	2.296605e-06
TCGA-DT-5265-01A-21D-1826-10	121	115	6	86	4.958678e-02	1	exome+100bp flanks	34834024	27	80	7.751042e-07	2.296605e-06
TCGA-DY-A0XA-01A-11D-A152-10	335	335	0	240	0	0	coding only	34834024	89	235	2.554973e-06	6.746278e-06
TCGA-DY-A1DC-01A-31D-A152-10	214	212	2	172	9.345794e-03	0	coding only	34834024	39	165	1.119595e-06	4.736748e-06
TCGA-DY-A1DD-01A-21D-A152-10	235	234	1	167	4.255319e-03	0	coding only	34834024	64	157	1.837284e-06	4.507088e-06
TCGA-DY-A1DF-01A-11D-A152-10	192	189	3	146	1.562500e-02	0	coding only	34834024	41	137	1.177010e-06	3.932936e-06
TCGA-DY-A1DG-01A-11D-A152-10	338	327	11	238	3.254438e-02	1	exome+100bp flanks	34834024	87	223	2.497558e-06	6.401787e-06
TCGA-DY-A1H8-01A-21D-A152-10	176	171	5	118	2.840909e-02	0	coding only	34834024	52	108	1.492793e-06	3.100417e-06
TCGA-EF-5830-01A-01D-1657-10	313	306	7	220	2.236422e-02	0	coding only	34834024	81	205	2.325313e-06	5.885051e-06
TCGA-EI-6506-01A-11D-1733-10	264	260	4	192	1.515152e-02	0	coding only	34834024	65	182	1.865992e-06	5.224777e-06
TCGA-EI-6507-01A-11D-1733-10	1115	1095	20	832	1.793722e-02	0	coding only	34834024	245	765	7.033353e-06	2.196129e-05
TCGA-EI-6508-01A-11D-1733-10	188	180	8	135	4.255319e-02	1	exome+100bp flanks	34834024	43	125	1.234425e-06	3.588446e-06
TCGA-EI-6510-01A-11D-1733-10	267	262	5	177	1.872659e-02	0	coding only	34834024	81	170	2.325313e-06	4.880286e-06
TCGA-F5-6464-01A-11D-1733-10	145	140	5	114	3.448276e-02	1	exome+100bp flanks	34834024	25	111	7.176891e-07	3.186540e-06
TCGA-F5-6465-01A-11D-1733-10	222	220	2	161	9.009009e-03	0	coding only	34834024	54	149	1.550208e-06	4.277427e-06
TCGA-F5-6571-01A-12D-1826-10	150	148	2	110	1.333333e-02	0	coding only	34834024	36	108	1.033472e-06	3.100417e-06
TCGA-F5-6702-01A-11D-1826-10	94	93	1	63	1.063830e-02	0	coding only	34834024	29	61	8.325194e-07	1.751161e-06
TCGA-F5-6811-01A-11D-1826-10	183	181	2	127	1.092896e-02	0	coding only	34834024	52	121	1.492793e-06	3.473615e-06
TCGA-F5-6812-01A-11D-1826-10	137	137	0	107	0	0	coding only	34834024	29	103	8.325194e-07	2.956879e-06
TCGA-F5-6813-01A-11D-1826-10	192	189	3	133	1.562500e-02	0	coding only	34834024	55	125	1.578916e-06	3.588446e-06
TCGA-G5-6235-01A-11D-1733-10	274	270	4	202	1.459854e-02	0	coding only	34834024	66	190	1.894699e-06	5.454437e-06
TCGA-G5-6641-01A-11D-1826-10	127	123	4	93	3.149606e-02	0	coding only	34834024	30	86	8.612269e-07	2.468851e-06