name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-3B-A9HI-01A-11D-A387-09	73	56	17	44	2.328767e-01	1	exome+100bp flanks	34834024	11	42	3.157832e-07	1.205718e-06
TCGA-3B-A9HJ-01A-11D-A387-09	22	9	13	7	5.909091e-01	2	all capture (no interval list)	65505363	2	6	3.053185e-08	9.159555e-08
TCGA-3B-A9HL-01A-11D-A387-09	77	61	16	51	2.077922e-01	1	exome+100bp flanks	34834024	9	46	2.583681e-07	1.320548e-06
TCGA-3B-A9HO-01A-11D-A387-09	82	58	24	44	2.926829e-01	1	exome+100bp flanks	34834024	13	44	3.731983e-07	1.263133e-06
TCGA-3B-A9HP-01A-11D-A387-09	80	61	19	52	2.375000e-01	1	exome+100bp flanks	34834024	9	50	2.583681e-07	1.435378e-06
TCGA-3B-A9HQ-01A-11D-A387-09	105	85	20	66	1.904762e-01	1	exome+100bp flanks	34834024	18	62	5.167362e-07	1.779869e-06
TCGA-3B-A9HR-01A-11D-A387-09	68	46	22	39	3.235294e-01	2	all capture (no interval list)	65505363	7	33	1.068615e-07	5.037755e-07
TCGA-3B-A9HS-01A-11D-A38Z-09	85	68	17	56	2.000000e-01	1	exome+100bp flanks	34834024	11	48	3.157832e-07	1.377963e-06
TCGA-3B-A9HT-01A-11D-A38Z-09	419	354	65	281	1.551313e-01	1	exome+100bp flanks	34834024	70	251	2.009530e-06	7.205599e-06
TCGA-3B-A9HU-01A-11D-A38Z-09	63	48	15	36	2.380952e-01	1	exome+100bp flanks	34834024	10	30	2.870756e-07	8.612269e-07
TCGA-3B-A9HV-01A-11D-A38Z-09	76	61	15	51	1.973684e-01	1	exome+100bp flanks	34834024	9	47	2.583681e-07	1.349256e-06
TCGA-3B-A9HX-01A-11D-A38Z-09	65	53	12	41	1.846154e-01	1	exome+100bp flanks	34834024	10	39	2.870756e-07	1.119595e-06
TCGA-3B-A9HY-01A-11D-A38Z-09	82	73	9	55	1.097561e-01	1	exome+100bp flanks	34834024	16	53	4.593210e-07	1.521501e-06
TCGA-3B-A9HZ-01A-11D-A38Z-09	56	42	14	30	2.500000e-01	1	exome+100bp flanks	34834024	11	26	3.157832e-07	7.463967e-07
TCGA-3B-A9I0-01A-11D-A38Z-09	66	46	20	42	3.030303e-01	2	all capture (no interval list)	65505363	4	40	6.106370e-08	6.106370e-07
TCGA-3B-A9I1-01A-11D-A38Z-09	60	43	17	36	2.833333e-01	1	exome+100bp flanks	34834024	7	33	2.009530e-07	9.473496e-07
TCGA-3B-A9I3-01A-11D-A38Z-09	69	52	17	42	2.463768e-01	1	exome+100bp flanks	34834024	9	37	2.583681e-07	1.062180e-06
TCGA-3R-A8YX-01A-11D-A37C-09	127	95	32	77	2.519685e-01	1	exome+100bp flanks	34834024	17	70	4.880286e-07	2.009530e-06
TCGA-DX-A1KU-01A-32D-A24N-09	86	71	15	55	1.744186e-01	1	exome+100bp flanks	34834024	16	49	4.593210e-07	1.406671e-06
TCGA-DX-A1KW-01A-22D-A24N-09	71	61	10	48	1.408451e-01	1	exome+100bp flanks	34834024	12	48	3.444908e-07	1.377963e-06
TCGA-DX-A1KX-01A-22D-A24N-09	98	79	19	66	1.938776e-01	1	exome+100bp flanks	34834024	10	56	2.870756e-07	1.607624e-06
TCGA-DX-A1KY-01A-11D-A24N-09	129	97	32	76	2.480620e-01	1	exome+100bp flanks	34834024	20	67	5.741513e-07	1.923407e-06
TCGA-DX-A1KZ-01A-11D-A24N-09	51	40	11	26	2.156863e-01	1	exome+100bp flanks	34834024	12	23	3.444908e-07	6.602740e-07
TCGA-DX-A1L0-01A-11D-A24N-09	116	99	17	80	1.465517e-01	1	exome+100bp flanks	34834024	18	71	5.167362e-07	2.038237e-06
TCGA-DX-A1L1-01A-11D-A24N-09	109	87	22	65	2.018349e-01	1	exome+100bp flanks	34834024	20	59	5.741513e-07	1.693746e-06
TCGA-DX-A1L2-01A-22D-A24N-09	159	137	22	104	1.383648e-01	1	exome+100bp flanks	34834024	33	94	9.473496e-07	2.698511e-06
TCGA-DX-A1L3-01A-11D-A24N-09	82	59	23	45	2.804878e-01	1	exome+100bp flanks	34834024	14	43	4.019059e-07	1.234425e-06
TCGA-DX-A1L4-01A-12D-A26G-09	30	20	10	16	3.333333e-01	2	all capture (no interval list)	65505363	4	14	6.106370e-08	2.137230e-07
TCGA-DX-A23R-01A-11D-A26G-09	59	43	16	35	2.711864e-01	1	exome+100bp flanks	34834024	8	30	2.296605e-07	8.612269e-07
TCGA-DX-A23T-01A-11D-A26G-09	26	15	11	13	4.230769e-01	2	all capture (no interval list)	65505363	2	12	3.053185e-08	1.831911e-07
TCGA-DX-A23U-01A-11D-A26G-09	54	33	21	23	3.888889e-01	2	all capture (no interval list)	65505363	9	22	1.373933e-07	3.358504e-07
TCGA-DX-A23V-01A-11D-A29N-09	33	22	11	19	3.333333e-01	2	all capture (no interval list)	65505363	3	18	4.579778e-08	2.747867e-07
TCGA-DX-A23Y-01A-11D-A27P-09	75	58	17	43	2.266667e-01	1	exome+100bp flanks	34834024	13	40	3.731983e-07	1.148303e-06
TCGA-DX-A240-01A-32D-A27P-09	33	17	16	11	4.848485e-01	2	all capture (no interval list)	65505363	6	11	9.159555e-08	1.679252e-07
TCGA-DX-A2IZ-01A-11D-A21Q-09	61	46	15	37	2.459016e-01	1	exome+100bp flanks	34834024	8	34	2.296605e-07	9.760572e-07
TCGA-DX-A2J0-01A-11D-A21Q-09	67	51	16	44	2.388060e-01	1	exome+100bp flanks	34834024	6	43	1.722454e-07	1.234425e-06
TCGA-DX-A2J1-01A-11D-A21Q-09	45	31	14	26	3.111111e-01	2	all capture (no interval list)	65505363	5	22	7.632963e-08	3.358504e-07
TCGA-DX-A2J4-01A-32D-A21Q-09	44	32	12	26	2.727273e-01	1	exome+100bp flanks	34834024	5	24	1.435378e-07	6.889816e-07
TCGA-DX-A3LS-01A-11D-A21Q-09	75	56	19	41	2.533333e-01	1	exome+100bp flanks	34834024	14	30	4.019059e-07	8.612269e-07
TCGA-DX-A3LT-01A-12D-A21Q-09	50	41	9	31	1.800000e-01	1	exome+100bp flanks	34834024	9	30	2.583681e-07	8.612269e-07
TCGA-DX-A3LU-01A-11D-A21Q-09	49	35	14	27	2.857143e-01	1	exome+100bp flanks	34834024	8	25	2.296605e-07	7.176891e-07
TCGA-DX-A3LW-01A-21D-A21Q-09	42	30	12	22	2.857143e-01	1	exome+100bp flanks	34834024	7	18	2.009530e-07	5.167362e-07
TCGA-DX-A3LY-01B-11D-A27P-09	73	56	17	44	2.328767e-01	1	exome+100bp flanks	34834024	10	37	2.870756e-07	1.062180e-06
TCGA-DX-A3M1-01A-11D-A228-09	81	67	14	57	1.728395e-01	1	exome+100bp flanks	34834024	9	54	2.583681e-07	1.550208e-06
TCGA-DX-A3M2-01A-21D-A228-09	115	100	15	72	1.304348e-01	1	exome+100bp flanks	34834024	26	62	7.463967e-07	1.779869e-06
TCGA-DX-A3U5-01A-11D-A228-09	37	25	12	20	3.243243e-01	2	all capture (no interval list)	65505363	5	17	7.632963e-08	2.595207e-07
TCGA-DX-A3U6-01A-11D-A29N-09	13	4	9	3	6.923077e-01	2	all capture (no interval list)	65505363	1	3	1.526593e-08	4.579778e-08
TCGA-DX-A3U7-01A-11D-A29N-09	51	40	11	34	2.156863e-01	1	exome+100bp flanks	34834024	6	30	1.722454e-07	8.612269e-07
TCGA-DX-A3U8-01A-11D-A29N-09	55	39	16	29	2.909091e-01	1	exome+100bp flanks	34834024	10	25	2.870756e-07	7.176891e-07
TCGA-DX-A3U9-01A-11D-A307-09	94	71	23	53	2.446809e-01	1	exome+100bp flanks	34834024	15	46	4.306135e-07	1.320548e-06
TCGA-DX-A3UA-01A-12D-A307-09	63	50	13	44	2.063492e-01	1	exome+100bp flanks	34834024	6	32	1.722454e-07	9.186421e-07
TCGA-DX-A3UB-01A-11D-A307-09	35	22	13	17	3.714286e-01	2	all capture (no interval list)	65505363	4	15	6.106370e-08	2.289889e-07
TCGA-DX-A3UC-01A-11D-A307-09	79	53	26	37	3.291139e-01	2	all capture (no interval list)	65505363	15	31	2.289889e-07	4.732437e-07
TCGA-DX-A3UD-01A-11D-A307-09	55	35	20	31	3.636364e-01	2	all capture (no interval list)	65505363	4	28	6.106370e-08	4.274459e-07
TCGA-DX-A3UE-01A-11D-A307-09	81	64	17	48	2.098765e-01	1	exome+100bp flanks	34834024	13	44	3.731983e-07	1.263133e-06
TCGA-DX-A3UF-01A-11D-A307-09	69	63	6	51	8.695652e-02	1	exome+100bp flanks	34834024	11	46	3.157832e-07	1.320548e-06
TCGA-DX-A48J-01A-21D-A307-09	43	28	15	26	3.488372e-01	2	all capture (no interval list)	65505363	1	25	1.526593e-08	3.816481e-07
TCGA-DX-A48K-01A-11D-A307-09	61	41	20	36	3.278689e-01	2	all capture (no interval list)	65505363	5	33	7.632963e-08	5.037755e-07
TCGA-DX-A48L-01A-11D-A307-09	94	69	25	50	2.659574e-01	1	exome+100bp flanks	34834024	19	47	5.454437e-07	1.349256e-06
TCGA-DX-A48N-01A-11D-A307-09	57	37	20	29	3.508772e-01	2	all capture (no interval list)	65505363	8	24	1.221274e-07	3.663822e-07
TCGA-DX-A48O-01A-11D-A307-09	83	60	23	51	2.771084e-01	1	exome+100bp flanks	34834024	8	46	2.296605e-07	1.320548e-06
TCGA-DX-A48P-01A-11D-A307-09	77	54	23	40	2.987013e-01	1	exome+100bp flanks	34834024	14	37	4.019059e-07	1.062180e-06
TCGA-DX-A48R-01A-11D-A307-09	72	58	14	46	1.944444e-01	1	exome+100bp flanks	34834024	12	43	3.444908e-07	1.234425e-06
TCGA-DX-A48U-01A-11D-A307-09	46	29	17	24	3.695652e-01	2	all capture (no interval list)	65505363	4	21	6.106370e-08	3.205844e-07
TCGA-DX-A48V-01A-11D-A307-09	56	45	11	36	1.964286e-01	1	exome+100bp flanks	34834024	8	32	2.296605e-07	9.186421e-07
TCGA-DX-A6B7-01A-11D-A307-09	49	35	14	26	2.857143e-01	1	exome+100bp flanks	34834024	8	24	2.296605e-07	6.889816e-07
TCGA-DX-A6B8-01A-11D-A307-09	94	76	18	57	1.914894e-01	1	exome+100bp flanks	34834024	17	53	4.880286e-07	1.521501e-06
TCGA-DX-A6B9-01A-12D-A32I-09	60	47	13	36	2.166667e-01	1	exome+100bp flanks	34834024	11	31	3.157832e-07	8.899345e-07
TCGA-DX-A6BA-01A-11D-A307-09	72	54	18	46	2.500000e-01	1	exome+100bp flanks	34834024	7	42	2.009530e-07	1.205718e-06
TCGA-DX-A6BB-01A-12D-A32I-09	68	56	12	43	1.764706e-01	1	exome+100bp flanks	34834024	11	40	3.157832e-07	1.148303e-06
TCGA-DX-A6BE-01A-41D-A32I-09	54	37	17	35	3.148148e-01	2	all capture (no interval list)	65505363	2	31	3.053185e-08	4.732437e-07
TCGA-DX-A6BF-01A-11D-A307-09	105	83	22	64	2.095238e-01	1	exome+100bp flanks	34834024	18	62	5.167362e-07	1.779869e-06
TCGA-DX-A6BG-01A-11D-A307-09	25	16	9	13	3.600000e-01	2	all capture (no interval list)	65505363	3	12	4.579778e-08	1.831911e-07
TCGA-DX-A6BH-01A-12D-A307-09	26	15	11	14	4.230769e-01	2	all capture (no interval list)	65505363	1	12	1.526593e-08	1.831911e-07
TCGA-DX-A6BK-01A-11D-A307-09	59	50	9	38	1.525424e-01	1	exome+100bp flanks	34834024	10	35	2.870756e-07	1.004765e-06
TCGA-DX-A6YQ-01A-12D-A33E-09	210	180	30	138	1.428571e-01	1	exome+100bp flanks	34834024	41	128	1.177010e-06	3.674568e-06
TCGA-DX-A6YR-01A-33D-A351-09	113	90	23	69	2.035398e-01	1	exome+100bp flanks	34834024	18	61	5.167362e-07	1.751161e-06
TCGA-DX-A6YU-01A-12D-A33E-09	117	102	15	79	1.282051e-01	1	exome+100bp flanks	34834024	22	72	6.315664e-07	2.066945e-06
TCGA-DX-A6YX-01A-11D-A417-09	76	59	17	44	2.236842e-01	1	exome+100bp flanks	34834024	14	39	4.019059e-07	1.119595e-06
TCGA-DX-A6YZ-01A-12D-A351-09	94	74	20	59	2.127660e-01	1	exome+100bp flanks	34834024	14	57	4.019059e-07	1.636331e-06
TCGA-DX-A6Z0-01A-13D-A36J-09	72	53	19	39	2.638889e-01	1	exome+100bp flanks	34834024	13	33	3.731983e-07	9.473496e-07
TCGA-DX-A6Z2-01A-12D-A36J-09	88	68	20	57	2.272727e-01	1	exome+100bp flanks	34834024	10	49	2.870756e-07	1.406671e-06
TCGA-DX-A7EF-01A-11D-A33E-09	87	69	18	54	2.068966e-01	1	exome+100bp flanks	34834024	15	52	4.306135e-07	1.492793e-06
TCGA-DX-A7EI-01A-11D-A33E-09	75	58	17	46	2.266667e-01	1	exome+100bp flanks	34834024	10	39	2.870756e-07	1.119595e-06
TCGA-DX-A7EL-01A-12D-A36J-09	107	81	26	60	2.429907e-01	1	exome+100bp flanks	34834024	20	54	5.741513e-07	1.550208e-06
TCGA-DX-A7EM-01A-11D-A36J-09	115	93	22	66	1.913043e-01	1	exome+100bp flanks	34834024	22	59	6.315664e-07	1.693746e-06
TCGA-DX-A7EN-01A-11D-A38Z-09	49	34	15	29	3.061224e-01	2	all capture (no interval list)	65505363	5	29	7.632963e-08	4.427118e-07
TCGA-DX-A7EO-01A-11D-A36J-09	48	30	18	25	3.750000e-01	2	all capture (no interval list)	65505363	4	24	6.106370e-08	3.663822e-07
TCGA-DX-A7EQ-01A-11D-A387-09	68	47	21	40	3.088235e-01	2	all capture (no interval list)	65505363	7	39	1.068615e-07	5.953711e-07
TCGA-DX-A7ER-01A-11D-A36J-09	59	45	14	37	2.372881e-01	1	exome+100bp flanks	34834024	8	34	2.296605e-07	9.760572e-07
TCGA-DX-A7ES-01A-31D-A38Z-09	61	41	20	32	3.278689e-01	2	all capture (no interval list)	65505363	7	29	1.068615e-07	4.427118e-07
TCGA-DX-A7ET-01A-11D-A36J-09	75	65	10	54	1.333333e-01	1	exome+100bp flanks	34834024	9	52	2.583681e-07	1.492793e-06
TCGA-DX-A7EU-01A-22D-A36J-09	110	95	15	76	1.363636e-01	1	exome+100bp flanks	34834024	17	71	4.880286e-07	2.038237e-06
TCGA-DX-A8BG-01A-12D-A417-09	97	75	22	56	2.268041e-01	1	exome+100bp flanks	34834024	17	47	4.880286e-07	1.349256e-06
TCGA-DX-A8BH-01A-11D-A37C-09	110	79	31	66	2.818182e-01	1	exome+100bp flanks	34834024	13	58	3.731983e-07	1.665039e-06
TCGA-DX-A8BJ-01A-11D-A417-09	111	89	22	72	1.981982e-01	1	exome+100bp flanks	34834024	16	66	4.593210e-07	1.894699e-06
TCGA-DX-A8BK-01A-11D-A37C-09	84	72	12	59	1.428571e-01	1	exome+100bp flanks	34834024	12	53	3.444908e-07	1.521501e-06
TCGA-DX-A8BL-01A-11D-A417-09	140	116	24	88	1.714286e-01	1	exome+100bp flanks	34834024	23	79	6.602740e-07	2.267898e-06
TCGA-DX-A8BM-01A-11D-A417-09	114	87	27	66	2.368421e-01	1	exome+100bp flanks	34834024	20	62	5.741513e-07	1.779869e-06
TCGA-DX-A8BN-01A-11D-A37C-09	88	75	13	57	1.477273e-01	1	exome+100bp flanks	34834024	15	55	4.306135e-07	1.578916e-06
TCGA-DX-A8BO-01A-11D-A417-09	61	50	11	35	1.803279e-01	1	exome+100bp flanks	34834024	14	34	4.019059e-07	9.760572e-07
TCGA-DX-A8BP-01A-11D-A37C-09	950	806	144	554	1.515789e-01	1	exome+100bp flanks	34834024	233	513	6.688863e-06	1.472698e-05
TCGA-DX-A8BQ-01A-11D-A37C-09	86	67	19	52	2.209302e-01	1	exome+100bp flanks	34834024	11	45	3.157832e-07	1.291840e-06
TCGA-DX-A8BR-01A-11D-A417-09	90	73	17	54	1.888889e-01	1	exome+100bp flanks	34834024	17	48	4.880286e-07	1.377963e-06
TCGA-DX-A8BS-01A-11D-A37C-09	89	60	29	46	3.258427e-01	2	all capture (no interval list)	65505363	13	43	1.984570e-07	6.564348e-07
TCGA-DX-A8BT-01A-11D-A37C-09	173	141	32	102	1.849711e-01	1	exome+100bp flanks	34834024	36	89	1.033472e-06	2.554973e-06
TCGA-DX-A8BU-01A-11D-A37C-09	113	92	21	73	1.858407e-01	1	exome+100bp flanks	34834024	18	70	5.167362e-07	2.009530e-06
TCGA-DX-A8BV-01A-11D-A37C-09	103	83	20	68	1.941748e-01	1	exome+100bp flanks	34834024	14	61	4.019059e-07	1.751161e-06
TCGA-DX-A8BX-01A-11D-A37C-09	129	98	31	72	2.403101e-01	1	exome+100bp flanks	34834024	25	62	7.176891e-07	1.779869e-06
TCGA-DX-A8BZ-01A-11D-A37C-09	99	77	22	52	2.222222e-01	1	exome+100bp flanks	34834024	25	48	7.176891e-07	1.377963e-06
TCGA-DX-AATS-01A-12D-A417-09	159	130	29	106	1.823899e-01	1	exome+100bp flanks	34834024	24	93	6.889816e-07	2.669804e-06
TCGA-DX-AB2E-01A-11D-A38Z-09	1306	1103	203	727	1.554364e-01	1	exome+100bp flanks	34834024	341	654	9.789280e-06	1.877475e-05
TCGA-DX-AB2F-01A-11D-A387-09	63	46	17	39	2.698413e-01	1	exome+100bp flanks	34834024	6	38	1.722454e-07	1.090887e-06
TCGA-DX-AB2G-01A-11D-A38Z-09	55	37	18	30	3.272727e-01	2	all capture (no interval list)	65505363	6	21	9.159555e-08	3.205844e-07
TCGA-DX-AB2H-01A-11D-A38Z-09	82	70	12	56	1.463415e-01	1	exome+100bp flanks	34834024	13	51	3.731983e-07	1.464086e-06
TCGA-DX-AB2J-01A-11D-A387-09	40	32	8	27	2.000000e-01	1	exome+100bp flanks	34834024	5	24	1.435378e-07	6.889816e-07
TCGA-DX-AB2L-01A-32D-A417-09	37	30	7	28	1.891892e-01	1	exome+100bp flanks	34834024	2	26	5.741513e-08	7.463967e-07
TCGA-DX-AB2O-01A-12D-A38Z-09	96	74	22	54	2.291667e-01	1	exome+100bp flanks	34834024	18	48	5.167362e-07	1.377963e-06
TCGA-DX-AB2P-01A-11D-A387-09	64	48	16	38	2.500000e-01	1	exome+100bp flanks	34834024	8	34	2.296605e-07	9.760572e-07
TCGA-DX-AB2Q-01A-11D-A38Z-09	133	103	30	81	2.255639e-01	1	exome+100bp flanks	34834024	21	74	6.028589e-07	2.124360e-06
TCGA-DX-AB2S-01A-11D-A38Z-09	31	25	6	17	1.935484e-01	1	exome+100bp flanks	34834024	5	17	1.435378e-07	4.880286e-07
TCGA-DX-AB2T-01A-11D-A387-09	90	72	18	61	2.000000e-01	1	exome+100bp flanks	34834024	9	56	2.583681e-07	1.607624e-06
TCGA-DX-AB2V-01A-11D-A417-09	131	104	27	72	2.061069e-01	1	exome+100bp flanks	34834024	29	65	8.325194e-07	1.865992e-06
TCGA-DX-AB2W-01A-11D-A38Z-09	184	150	34	123	1.847826e-01	1	exome+100bp flanks	34834024	25	115	7.176891e-07	3.301370e-06
TCGA-DX-AB2X-01A-11D-A387-09	85	70	15	51	1.764706e-01	1	exome+100bp flanks	34834024	18	49	5.167362e-07	1.406671e-06
TCGA-DX-AB2Z-01A-11D-A387-09	104	87	17	70	1.634615e-01	1	exome+100bp flanks	34834024	17	65	4.880286e-07	1.865992e-06
TCGA-DX-AB30-01A-11D-A38Z-09	37	31	6	21	1.621622e-01	1	exome+100bp flanks	34834024	8	20	2.296605e-07	5.741513e-07
TCGA-DX-AB32-01A-11D-A417-09	411	350	61	246	1.484185e-01	1	exome+100bp flanks	34834024	94	233	2.698511e-06	6.688863e-06
TCGA-DX-AB35-01A-21D-A417-09	96	73	23	63	2.395833e-01	1	exome+100bp flanks	34834024	9	55	2.583681e-07	1.578916e-06
TCGA-DX-AB36-01A-11D-A417-09	60	51	9	44	1.500000e-01	1	exome+100bp flanks	34834024	7	41	2.009530e-07	1.177010e-06
TCGA-DX-AB37-01A-11D-A417-09	83	69	14	51	1.686747e-01	1	exome+100bp flanks	34834024	16	44	4.593210e-07	1.263133e-06
TCGA-DX-AB3A-01A-11D-A417-09	81	60	21	47	2.592593e-01	1	exome+100bp flanks	34834024	12	46	3.444908e-07	1.320548e-06
TCGA-DX-AB3B-01A-11D-A417-09	62	49	13	41	2.096774e-01	1	exome+100bp flanks	34834024	8	36	2.296605e-07	1.033472e-06
TCGA-DX-AB3C-01A-11D-A417-09	37	23	14	22	3.783784e-01	2	all capture (no interval list)	65505363	1	18	1.526593e-08	2.747867e-07
TCGA-FX-A2QS-01A-11D-A21Q-09	85	61	24	46	2.823529e-01	1	exome+100bp flanks	34834024	11	44	3.157832e-07	1.263133e-06
TCGA-FX-A3NJ-01A-11D-A21Q-09	42	25	17	19	4.047619e-01	2	all capture (no interval list)	65505363	6	17	9.159555e-08	2.595207e-07
TCGA-FX-A3NK-01A-11D-A21Q-09	38	34	4	26	1.052632e-01	1	exome+100bp flanks	34834024	6	22	1.722454e-07	6.315664e-07
TCGA-FX-A3RE-01A-11D-A228-09	140	121	19	89	1.357143e-01	1	exome+100bp flanks	34834024	30	82	8.612269e-07	2.354020e-06
TCGA-FX-A3TO-01A-11D-A228-09	99	72	27	52	2.727273e-01	1	exome+100bp flanks	34834024	20	50	5.741513e-07	1.435378e-06
TCGA-FX-A48G-01A-11D-A24N-09	86	55	31	41	3.604651e-01	2	all capture (no interval list)	65505363	10	38	1.526593e-07	5.801052e-07
TCGA-FX-A76Y-01A-11D-A351-09	54	41	13	35	2.407407e-01	1	exome+100bp flanks	34834024	5	33	1.435378e-07	9.473496e-07
TCGA-FX-A8OO-01A-11D-A36J-09	69	46	23	38	3.333333e-01	2	all capture (no interval list)	65505363	8	32	1.221274e-07	4.885096e-07
TCGA-HB-A2OT-01A-11D-A21Q-09	95	81	14	65	1.473684e-01	1	exome+100bp flanks	34834024	16	61	4.593210e-07	1.751161e-06
TCGA-HB-A3L4-01A-11D-A21Q-09	60	44	16	31	2.666667e-01	1	exome+100bp flanks	34834024	13	26	3.731983e-07	7.463967e-07
TCGA-HB-A3YV-01A-11D-A24N-09	78	61	17	45	2.179487e-01	1	exome+100bp flanks	34834024	15	38	4.306135e-07	1.090887e-06
TCGA-HB-A43Z-01A-11D-A24N-09	79	64	15	52	1.898734e-01	1	exome+100bp flanks	34834024	11	49	3.157832e-07	1.406671e-06
TCGA-HB-A5W3-01A-11D-A29N-09	50	34	16	23	3.200000e-01	2	all capture (no interval list)	65505363	10	22	1.526593e-07	3.358504e-07
TCGA-HS-A5N7-01A-21D-A26G-09	66	40	26	29	3.939394e-01	2	all capture (no interval list)	65505363	11	28	1.679252e-07	4.274459e-07
TCGA-HS-A5N8-01A-11D-A26G-09	92	63	29	48	3.152174e-01	2	all capture (no interval list)	65505363	13	43	1.984570e-07	6.564348e-07
TCGA-IE-A3OV-01A-11D-A228-09	52	43	9	31	1.730769e-01	1	exome+100bp flanks	34834024	11	30	3.157832e-07	8.612269e-07
TCGA-IE-A4EH-01A-11D-A24N-09	51	38	13	27	2.549020e-01	1	exome+100bp flanks	34834024	8	22	2.296605e-07	6.315664e-07
TCGA-IE-A4EI-01A-11D-A24N-09	44	39	5	29	1.136364e-01	1	exome+100bp flanks	34834024	9	25	2.583681e-07	7.176891e-07
TCGA-IE-A4EJ-01A-11D-A24N-09	67	54	13	36	1.940299e-01	1	exome+100bp flanks	34834024	18	35	5.167362e-07	1.004765e-06
TCGA-IE-A4EK-01A-11D-A24N-09	45	32	13	25	2.888889e-01	1	exome+100bp flanks	34834024	5	22	1.435378e-07	6.315664e-07
TCGA-IE-A6BZ-01A-11D-A307-09	63	44	19	35	3.015873e-01	2	all capture (no interval list)	65505363	7	31	1.068615e-07	4.732437e-07
TCGA-IF-A4AJ-01A-11D-A24N-09	78	58	20	43	2.564103e-01	1	exome+100bp flanks	34834024	15	40	4.306135e-07	1.148303e-06
TCGA-IF-A4AK-01A-21D-A24N-09	52	41	11	36	2.115385e-01	1	exome+100bp flanks	34834024	5	31	1.435378e-07	8.899345e-07
TCGA-IS-A3K6-01A-11D-A21Q-09	62	43	19	36	3.064516e-01	2	all capture (no interval list)	65505363	7	33	1.068615e-07	5.037755e-07
TCGA-IS-A3K7-01A-11D-A21Q-09	131	107	24	86	1.832061e-01	1	exome+100bp flanks	34834024	18	77	5.167362e-07	2.210482e-06
TCGA-IS-A3K8-01A-11D-A21Q-09	20	15	5	12	2.500000e-01	1	exome+100bp flanks	34834024	2	12	5.741513e-08	3.444908e-07
TCGA-IS-A3KA-01A-11D-A21Q-09	90	70	20	55	2.222222e-01	1	exome+100bp flanks	34834024	13	47	3.731983e-07	1.349256e-06
TCGA-IW-A3M4-01A-11D-A21Q-09	47	33	14	29	2.978723e-01	1	exome+100bp flanks	34834024	4	27	1.148303e-07	7.751042e-07
TCGA-IW-A3M5-01A-22D-A21Q-09	72	57	15	42	2.083333e-01	1	exome+100bp flanks	34834024	13	38	3.731983e-07	1.090887e-06
TCGA-IW-A3M6-01A-11D-A21Q-09	88	66	22	50	2.500000e-01	1	exome+100bp flanks	34834024	15	47	4.306135e-07	1.349256e-06
TCGA-JV-A5VE-01A-11D-A29N-09	63	46	17	39	2.698413e-01	1	exome+100bp flanks	34834024	7	33	2.009530e-07	9.473496e-07
TCGA-JV-A5VF-01A-11D-A29N-09	51	39	12	35	2.352941e-01	1	exome+100bp flanks	34834024	4	30	1.148303e-07	8.612269e-07
TCGA-JV-A75J-01A-11D-A32I-09	144	115	29	89	2.013889e-01	1	exome+100bp flanks	34834024	22	82	6.315664e-07	2.354020e-06
TCGA-K1-A3PO-01A-11D-A21Q-09	31	20	11	14	3.548387e-01	2	all capture (no interval list)	65505363	2	11	3.053185e-08	1.679252e-07
TCGA-K1-A42W-01A-11D-A24N-09	63	55	8	42	1.269841e-01	1	exome+100bp flanks	34834024	13	40	3.731983e-07	1.148303e-06
TCGA-K1-A42X-01A-11D-A24N-09	90	66	24	48	2.666667e-01	1	exome+100bp flanks	34834024	18	42	5.167362e-07	1.205718e-06
TCGA-K1-A6RT-01A-32D-A33E-09	72	53	19	36	2.638889e-01	1	exome+100bp flanks	34834024	15	35	4.306135e-07	1.004765e-06
TCGA-K1-A6RU-01A-11D-A32I-09	55	41	14	29	2.545455e-01	1	exome+100bp flanks	34834024	11	26	3.157832e-07	7.463967e-07
TCGA-K1-A6RV-01A-11D-A32I-09	106	89	17	74	1.603774e-01	1	exome+100bp flanks	34834024	15	70	4.306135e-07	2.009530e-06
TCGA-KD-A5QS-01A-11D-A27P-09	103	78	25	70	2.427184e-01	1	exome+100bp flanks	34834024	8	68	2.296605e-07	1.952114e-06
TCGA-KD-A5QT-01A-11D-A27P-09	57	42	15	34	2.631579e-01	1	exome+100bp flanks	34834024	8	31	2.296605e-07	8.899345e-07
TCGA-KD-A5QU-01A-11D-A27P-09	86	76	10	65	1.162791e-01	1	exome+100bp flanks	34834024	10	62	2.870756e-07	1.779869e-06
TCGA-KF-A41W-01A-11D-A24N-09	91	69	22	54	2.417582e-01	1	exome+100bp flanks	34834024	12	47	3.444908e-07	1.349256e-06
TCGA-LI-A67I-01A-31D-A307-09	66	53	13	47	1.969697e-01	1	exome+100bp flanks	34834024	6	40	1.722454e-07	1.148303e-06
TCGA-LI-A9QH-01A-11D-A37C-09	163	128	35	98	2.147239e-01	1	exome+100bp flanks	34834024	27	92	7.751042e-07	2.641096e-06
TCGA-MB-A5Y8-01A-11D-A29N-09	85	58	27	49	3.176471e-01	2	all capture (no interval list)	65505363	7	46	1.068615e-07	7.022326e-07
TCGA-MB-A5Y9-01A-11D-A29N-09	37	22	15	16	4.054054e-01	2	all capture (no interval list)	65505363	4	13	6.106370e-08	1.984570e-07
TCGA-MB-A5YA-01A-11D-A29N-09	42	28	14	22	3.333333e-01	2	all capture (no interval list)	65505363	5	20	7.632963e-08	3.053185e-07
TCGA-MB-A8JK-01A-11D-A36J-09	82	60	22	48	2.682927e-01	1	exome+100bp flanks	34834024	12	44	3.444908e-07	1.263133e-06
TCGA-MB-A8JL-01A-11D-A36J-09	64	49	15	40	2.343750e-01	1	exome+100bp flanks	34834024	7	36	2.009530e-07	1.033472e-06
TCGA-MJ-A68H-01A-11D-A307-09	69	55	14	37	2.028986e-01	1	exome+100bp flanks	34834024	17	30	4.880286e-07	8.612269e-07
TCGA-MJ-A68J-01A-11D-A307-09	23	14	9	10	3.913043e-01	2	all capture (no interval list)	65505363	4	8	6.106370e-08	1.221274e-07
TCGA-MJ-A850-01A-11D-A351-09	36	19	17	16	4.722222e-01	2	all capture (no interval list)	65505363	2	13	3.053185e-08	1.984570e-07
TCGA-MO-A47R-01A-11D-A24N-09	66	53	13	47	1.969697e-01	1	exome+100bp flanks	34834024	6	40	1.722454e-07	1.148303e-06
TCGA-N1-A6IA-01A-12D-A32I-09	58	40	18	35	3.103448e-01	2	all capture (no interval list)	65505363	5	31	7.632963e-08	4.732437e-07
TCGA-PC-A5DK-01A-11D-A27P-09	34	20	14	17	4.117647e-01	2	all capture (no interval list)	65505363	2	14	3.053185e-08	2.137230e-07
TCGA-PC-A5DL-01A-11D-A26G-09	50	35	15	28	3.000000e-01	2	all capture (no interval list)	65505363	7	26	1.068615e-07	3.969141e-07
TCGA-PC-A5DN-01A-12D-A27P-09	73	59	14	51	1.917808e-01	1	exome+100bp flanks	34834024	6	46	1.722454e-07	1.320548e-06
TCGA-PC-A5DO-01A-11D-A26G-09	62	43	19	38	3.064516e-01	2	all capture (no interval list)	65505363	5	35	7.632963e-08	5.343074e-07
TCGA-PT-A8TR-01A-11D-A37C-09	70	49	21	37	3.000000e-01	2	all capture (no interval list)	65505363	11	35	1.679252e-07	5.343074e-07
TCGA-QC-A6FX-01A-11D-A32I-09	68	55	13	46	1.911765e-01	1	exome+100bp flanks	34834024	8	44	2.296605e-07	1.263133e-06
TCGA-QC-A7B5-01A-11D-A33E-09	2819	2415	404	1667	1.433132e-01	1	exome+100bp flanks	34834024	686	1536	1.969339e-05	4.409482e-05
TCGA-QC-AA9N-01A-11D-A38Z-09	73	59	14	43	1.917808e-01	1	exome+100bp flanks	34834024	16	36	4.593210e-07	1.033472e-06
TCGA-QQ-A5V2-01A-11D-A32I-09	48	40	8	34	1.666667e-01	1	exome+100bp flanks	34834024	5	31	1.435378e-07	8.899345e-07
TCGA-QQ-A5V9-01A-11D-A32I-09	91	74	17	60	1.868132e-01	1	exome+100bp flanks	34834024	13	54	3.731983e-07	1.550208e-06
TCGA-QQ-A5VA-01A-12D-A32I-09	82	67	15	51	1.829268e-01	1	exome+100bp flanks	34834024	16	47	4.593210e-07	1.349256e-06
TCGA-QQ-A5VB-01A-11D-A36J-09	104	88	16	72	1.538462e-01	1	exome+100bp flanks	34834024	15	63	4.306135e-07	1.808577e-06
TCGA-QQ-A5VC-01A-31D-A32I-09	117	84	33	70	2.820513e-01	1	exome+100bp flanks	34834024	12	62	3.444908e-07	1.779869e-06
TCGA-QQ-A5VD-01A-21D-A32I-09	570	484	86	331	1.508772e-01	1	exome+100bp flanks	34834024	140	311	4.019059e-06	8.928053e-06
TCGA-QQ-A8VD-01A-42D-A38Z-09	26	15	11	10	4.230769e-01	2	all capture (no interval list)	65505363	5	8	7.632963e-08	1.221274e-07
TCGA-QQ-A8VG-01A-11D-A37C-09	552	472	80	328	1.449275e-01	1	exome+100bp flanks	34834024	136	296	3.904229e-06	8.497439e-06
TCGA-QQ-A8VH-01A-11D-A37C-09	74	57	17	51	2.297297e-01	1	exome+100bp flanks	34834024	5	50	1.435378e-07	1.435378e-06
TCGA-RN-A68Q-01A-11D-A307-09	22	12	10	8	4.545455e-01	2	all capture (no interval list)	65505363	4	8	6.106370e-08	1.221274e-07
TCGA-RN-AAAQ-01A-21D-A38Z-09	74	58	16	49	2.162162e-01	1	exome+100bp flanks	34834024	8	40	2.296605e-07	1.148303e-06
TCGA-SG-A6Z4-01A-22D-A33E-09	144	110	34	86	2.361111e-01	1	exome+100bp flanks	34834024	23	78	6.602740e-07	2.239190e-06
TCGA-SG-A6Z7-01A-12D-A32I-09	89	65	24	54	2.696629e-01	1	exome+100bp flanks	34834024	10	50	2.870756e-07	1.435378e-06
TCGA-SG-A849-01A-11D-A351-09	84	69	15	52	1.785714e-01	1	exome+100bp flanks	34834024	15	48	4.306135e-07	1.377963e-06
TCGA-SI-A71O-01A-12D-A33E-09	89	74	15	57	1.685393e-01	1	exome+100bp flanks	34834024	16	56	4.593210e-07	1.607624e-06
TCGA-SI-A71P-01A-12D-A33E-09	80	61	19	52	2.375000e-01	1	exome+100bp flanks	34834024	9	41	2.583681e-07	1.177010e-06
TCGA-SI-A71Q-01A-12D-A33E-09	103	84	19	65	1.844660e-01	1	exome+100bp flanks	34834024	16	58	4.593210e-07	1.665039e-06
TCGA-SI-AA8B-01A-11D-A387-09	84	65	19	52	2.261905e-01	1	exome+100bp flanks	34834024	12	46	3.444908e-07	1.320548e-06
TCGA-SI-AA8C-01A-11D-A387-09	56	41	15	31	2.678571e-01	1	exome+100bp flanks	34834024	8	30	2.296605e-07	8.612269e-07
TCGA-UE-A6QT-01A-12D-A32I-09	34	23	11	16	3.235294e-01	2	all capture (no interval list)	65505363	6	16	9.159555e-08	2.442548e-07
TCGA-UE-A6QU-01A-12D-A32I-09	90	68	22	50	2.444444e-01	1	exome+100bp flanks	34834024	18	49	5.167362e-07	1.406671e-06
TCGA-VT-A80G-01A-11D-A36J-09	89	65	24	51	2.696629e-01	1	exome+100bp flanks	34834024	12	47	3.444908e-07	1.349256e-06
TCGA-VT-AB3D-01A-12D-A417-09	75	55	20	43	2.666667e-01	1	exome+100bp flanks	34834024	9	40	2.583681e-07	1.148303e-06
TCGA-WK-A8XO-01A-11D-A37C-09	138	106	32	82	2.318841e-01	1	exome+100bp flanks	34834024	24	76	6.889816e-07	2.181775e-06
TCGA-WK-A8XQ-01A-11D-A37C-09	45	32	13	27	2.888889e-01	1	exome+100bp flanks	34834024	5	26	1.435378e-07	7.463967e-07
TCGA-WK-A8XS-01A-11D-A37C-09	83	63	20	40	2.409639e-01	1	exome+100bp flanks	34834024	22	39	6.315664e-07	1.119595e-06
TCGA-WK-A8XT-01A-11D-A37C-09	83	61	22	47	2.650602e-01	1	exome+100bp flanks	34834024	13	46	3.731983e-07	1.320548e-06
TCGA-WK-A8XX-01A-11D-A37C-09	113	98	15	73	1.327434e-01	1	exome+100bp flanks	34834024	25	69	7.176891e-07	1.980822e-06
TCGA-WK-A8XY-01A-11D-A37C-09	83	65	18	55	2.168675e-01	1	exome+100bp flanks	34834024	7	51	2.009530e-07	1.464086e-06
TCGA-WK-A8XZ-01A-11D-A37C-09	76	58	18	47	2.368421e-01	1	exome+100bp flanks	34834024	10	45	2.870756e-07	1.291840e-06
TCGA-WK-A8Y0-01A-11D-A417-09	84	62	22	45	2.619048e-01	1	exome+100bp flanks	34834024	13	42	3.731983e-07	1.205718e-06
TCGA-WP-A9GB-01A-11D-A37C-09	208	173	35	144	1.682692e-01	1	exome+100bp flanks	34834024	26	131	7.463967e-07	3.760691e-06
TCGA-X2-A95T-01A-11D-A37C-09	128	104	24	80	1.875000e-01	1	exome+100bp flanks	34834024	23	70	6.602740e-07	2.009530e-06
TCGA-X6-A7W8-01A-21D-A351-09	122	97	25	72	2.049180e-01	1	exome+100bp flanks	34834024	21	64	6.028589e-07	1.837284e-06
TCGA-X6-A7WC-01A-12D-A351-09	132	96	36	75	2.727273e-01	1	exome+100bp flanks	34834024	19	65	5.454437e-07	1.865992e-06
TCGA-X6-A7WD-01A-21D-A351-09	67	48	19	35	2.835821e-01	1	exome+100bp flanks	34834024	13	33	3.731983e-07	9.473496e-07
TCGA-X6-A8C2-01A-11D-A36J-09	146	133	13	119	8.904110e-02	1	exome+100bp flanks	34834024	14	115	4.019059e-07	3.301370e-06
TCGA-X6-A8C3-01A-11D-A36J-09	98	81	17	57	1.734694e-01	1	exome+100bp flanks	34834024	18	54	5.167362e-07	1.550208e-06
TCGA-X6-A8C4-01A-11D-A36J-09	127	99	28	82	2.204724e-01	1	exome+100bp flanks	34834024	14	75	4.019059e-07	2.153067e-06
TCGA-X6-A8C5-01A-11D-A36J-09	118	94	24	73	2.033898e-01	1	exome+100bp flanks	34834024	16	65	4.593210e-07	1.865992e-06
TCGA-X6-A8C6-01A-11D-A36J-09	109	87	22	70	2.018349e-01	1	exome+100bp flanks	34834024	13	67	3.731983e-07	1.923407e-06
TCGA-X6-A8C7-01A-11D-A36J-09	59	47	12	39	2.033898e-01	1	exome+100bp flanks	34834024	7	33	2.009530e-07	9.473496e-07
TCGA-X9-A971-01A-11D-A387-09	87	74	13	65	1.494253e-01	1	exome+100bp flanks	34834024	9	56	2.583681e-07	1.607624e-06
TCGA-X9-A973-01A-11D-A387-09	69	54	15	44	2.173913e-01	1	exome+100bp flanks	34834024	10	43	2.870756e-07	1.234425e-06
TCGA-Z4-A8JB-01A-23D-A37C-09	57	47	10	39	1.754386e-01	1	exome+100bp flanks	34834024	8	36	2.296605e-07	1.033472e-06
TCGA-Z4-A9VC-01A-11D-A37C-09	63	47	16	36	2.539683e-01	1	exome+100bp flanks	34834024	11	34	3.157832e-07	9.760572e-07
TCGA-Z4-AAPF-01A-11D-A38Z-09	51	37	14	26	2.745098e-01	1	exome+100bp flanks	34834024	9	25	2.583681e-07	7.176891e-07
TCGA-Z4-AAPG-01A-11D-A38Z-09	86	59	27	48	3.139535e-01	2	all capture (no interval list)	65505363	10	36	1.526593e-07	5.495733e-07