Correlation between gene mutation status and molecular subtypes

Stomach Adenocarcinoma (Primary solid tumor)

21 August 2015 | analyses__2015_08_21

Maintainer Information

Citation Information

Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)

Cite as Broad Institute TCGA Genome Data Analysis Center (2015): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1W66K2D

Overview

Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 788 genes and 10 molecular subtypes across 289 patients, 2510 significant findings detected with P value < 0.05 and Q value < 0.25.

TP53 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ARID1A mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
RNF43 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MLL4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
XYLT2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
LARP4B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
BZRAP1 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
B2M mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
HLA-B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GNG12 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PLEKHA6 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
CDH1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
RHOA mutation correlated to 'MIRSEQ_CNMF'.
LMAN1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
KLF3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
PTEN mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MTG1 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
FBXW7 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
SMAD4 mutation correlated to 'MIRSEQ_CNMF'.
ZBTB20 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
HLA-A mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
FRMD4A mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CTCF mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MLL2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MVK mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MBD6 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
APC mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CD4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
PIK3CA mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
JARID2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PAX6 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
SNAPC2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
KIAA0182 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
AOC3 mutation correlated to 'RPPA_CHIERARCHICAL'.
ZBTB7C mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
NLK mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
WBP1 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TMEM41A mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
POLM mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
ATP6V1B1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MUC6 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
CIC mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SLC27A3 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
ZMYM4 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
NT5M mutation correlated to 'MIRSEQ_CNMF'.
BCL9L mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CCDC153 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CNMF'.
IRF2 mutation correlated to 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ADAM28 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
BCOR mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
GLI1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
DDC mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TBX4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
GXYLT1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
IWS1 mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
C7ORF50 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
GAS6 mutation correlated to 'METHLYATION_CNMF'.
AKAP13 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
C14ORF43 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
C1QTNF5 mutation correlated to 'RPPA_CHIERARCHICAL'.
WDR5 mutation correlated to 'RPPA_CHIERARCHICAL'.
PRSS36 mutation correlated to 'METHLYATION_CNMF'.
PAFAH1B1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
EPHA2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SLC16A6 mutation correlated to 'METHLYATION_CNMF'.
C9ORF131 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
WNT16 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SPTY2D1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GPSM3 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
ZNF878 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CCDC88A mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
FHDC1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
ARHGAP5 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
CRYGA mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
CDC14A mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
BCORL1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PRRG3 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
OPTN mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
RBM43 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
ZC3H18 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
CTSC mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
RALGAPB mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
CR2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
MSH6 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
ZFHX4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SLC10A6 mutation correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
LEMD1 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
KIF13A mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
DDX17 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
RTN2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PAX2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KIAA0240 mutation correlated to 'RPPA_CHIERARCHICAL'.
INPPL1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TFE3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
BTBD7 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
NOX5 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
SNAPC1 mutation correlated to 'METHLYATION_CNMF'.
ADAM30 mutation correlated to 'MIRSEQ_CNMF'.
EIF5B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PYGO2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PRPF40B mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
C6ORF89 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ABCC4 mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
USP21 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SETDB2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TTF1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
FLNB mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PMEPA1 mutation correlated to 'MIRSEQ_CNMF'.
TNFRSF9 mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PGM5 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
VPS13A mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
FAM151A mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
RASA1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
ZNF48 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
SERPINI1 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
AQP8 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
ZCCHC6 mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ZFHX3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
C19ORF40 mutation correlated to 'RPPA_CNMF'.
SPG20 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SREBF2 mutation correlated to 'MIRSEQ_CNMF'.
GPR161 mutation correlated to 'RPPA_CNMF'.
RGL2 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
FHOD3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CABP5 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
TP53BP2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PHACTR2 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
FILIP1L mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
STAT5B mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
FASTKD1 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CNMF'.
ATP6V1C2 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
ZFC3H1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.
GCC2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
STAT2 mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
UBQLN2 mutation correlated to 'RPPA_CHIERARCHICAL'.
INF2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
ZKSCAN5 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CNMF'.
PAMR1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
EPHX1 mutation correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
ARID1B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ALDH3A1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
FERMT2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
C13ORF33 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
OTX2 mutation correlated to 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
KIAA0195 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PLEKHA5 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
EIF4G3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
RB1CC1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
DYRK4 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
TRIP10 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CTNND1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ATP2A1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
IFRD1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
STAB1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
FBXO21 mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
HOXD8 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.
AXIN2 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
TBC1D22B mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
MFRP mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PALB2 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
DSTN mutation correlated to 'MIRSEQ_CNMF'.
PHACTR4 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
ATXN2L mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
SVIL mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
WNK4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
ACVR1B mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
C5ORF42 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ITGA6 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
CDC25C mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.
BEND3 mutation correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ABCA6 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
FOXN3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
BAX mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
FAM113B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
TP53BP1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
C1R mutation correlated to 'RPPA_CHIERARCHICAL'.
WDR7 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ERBB3 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.
CASP8 mutation correlated to 'CN_CNMF'.
PIGB mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
NAA25 mutation correlated to 'METHLYATION_CNMF'.
HNF1B mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
GLIPR1L2 mutation correlated to 'MRNASEQ_CNMF'.
CR1 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
TENC1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.
RABGAP1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ALPK2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
RAD51AP2 mutation correlated to 'MIRSEQ_CNMF'.
DNAJC1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
GPR160 mutation correlated to 'RPPA_CHIERARCHICAL'.
DDX60 mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
OSBP2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
RSF1 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
KIAA1967 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CNBD1 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
DLGAP3 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.
ABCB6 mutation correlated to 'MIRSEQ_CNMF'.
RAB14 mutation correlated to 'RPPA_CHIERARCHICAL'.
WASF3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
ZDHHC7 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
ABLIM2 mutation correlated to 'RPPA_CHIERARCHICAL'.
ATM mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ZC3H13 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
IRS4 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
KIAA1009 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ADNP2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ZNF124 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
INTS12 mutation correlated to 'RPPA_CHIERARCHICAL'.
DNAH5 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CSF3R mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
PIGO mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
MASTL mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
RNF111 mutation correlated to 'RPPA_CHIERARCHICAL'.
KIAA0406 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
SF3B2 mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
SBNO1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
POP1 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
FZD3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
RING1 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.
PCGF3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
ZNF608 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SYNJ2 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GATA3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
NFE2L1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
SERPINB12 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
GPR141 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
ART1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
HIVEP3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
NEXN mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.
SGOL2 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.
CASD1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
FAM116A mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.
TCHP mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
IPO11 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
CLDN6 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SOX7 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
C20ORF160 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.
EFHA1 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
PAPD4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
VPRBP mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
PLA2G1B mutation correlated to 'MIRSEQ_MATURE_CNMF'.
BTBD11 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TRAM1L1 mutation correlated to 'METHLYATION_CNMF'.
WNT1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
SCLT1 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
USP15 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
NCAPH mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CNMF'.
CCDC108 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
FBXO48 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
CROT mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
BRSK1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
PRMT8 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PLEKHO1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
EOMES mutation correlated to 'METHLYATION_CNMF'.
FYB mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SDAD1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
IKBKE mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CADPS2 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.
IL2RG mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
ASPN mutation correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GLT8D1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ZNF43 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
HIVEP1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
OR7C1 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
MLL3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KBTBD6 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
EBF3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
ELF3 mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MYEOV mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
SMARCB1 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.
MLXIPL mutation correlated to 'MIRSEQ_CNMF'.
FAM193A mutation correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
BRWD1 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.
CDK12 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CPB2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
RCOR3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
TAF1L mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
GPR124 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
COL12A1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
OR2J3 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
ITPR2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
GPR82 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
ACTL6A mutation correlated to 'METHLYATION_CNMF'.
CTSD mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
GON4L mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
KLC2 mutation correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
RBM6 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SLC26A7 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
OR5M3 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
CTNNA1 mutation correlated to 'MRNASEQ_CNMF'.
MMP3 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
ALDH2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
SOS2 mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
OR4K5 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
PLXNA2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
C15ORF52 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
KIAA1804 mutation correlated to 'MIRSEQ_CNMF'.
PGBD1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ADAMTSL4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
HTR1E mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.
UGP2 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
PFKP mutation correlated to 'RPPA_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
EDNRB mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ISG20L2 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.
MAMSTR mutation correlated to 'RPPA_CHIERARCHICAL'.
UHRF1BP1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
FAM70B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SEC24C mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
CEP57 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
MAP7D3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CCDC148 mutation correlated to 'MIRSEQ_CNMF'.
HAUS6 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
GNAZ mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
C12ORF51 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
TACC2 mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
RUSC2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
EGR1 mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
TAF6 mutation correlated to 'RPPA_CHIERARCHICAL'.
KCNH4 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.
IGF2BP3 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.
ALG10 mutation correlated to 'METHLYATION_CNMF'.
PLAG1 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
ARFGEF1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SLC12A7 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TRUB1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
SRCIN1 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
CA2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CDH16 mutation correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
HDLBP mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GRK4 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
MYOCD mutation correlated to 'CN_CNMF'.
WHSC1L1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
STX2 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
MTIF2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
BMPR1B mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
PKN2 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
KIRREL2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CHST15 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
YIF1A mutation correlated to 'RPPA_CHIERARCHICAL'.
SH3KBP1 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
TMEM63A mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
NID2 mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
SUCLG2 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
C7ORF58 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
B3GNT5 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.
CAMTA2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PLA2G15 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.
PHKB mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
CEP120 mutation correlated to 'CN_CNMF'.
SERPINB8 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
EXO1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SOHLH2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.
SGK3 mutation correlated to 'RPPA_CHIERARCHICAL'.
MKL1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.
ACP1 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.
KIAA1217 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
YLPM1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
NEK7 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
SAP130 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TLR4 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
DCHS1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
IRS1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
MPRIP mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TIMM44 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
UBC mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.
PPL mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
LRP1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CTNNB1 mutation correlated to 'MRNASEQ_CNMF'.
KBTBD10 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
PUS7 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
PADI3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
JHDM1D mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
CNKSR2 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CNMF'.
UBXN6 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
GPATCH2 mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
ZFP36L2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PRICKLE4 mutation correlated to 'MIRSEQ_CNMF'.
LRFN3 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
C7ORF49 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
THEMIS mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
BRCA1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
KCNJ10 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TNK2 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KCNH3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
LMTK3 mutation correlated to 'MRNASEQ_CNMF'.
MRPL2 mutation correlated to 'MRNASEQ_CNMF'.
SEZ6 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
XK mutation correlated to 'RPPA_CHIERARCHICAL'.
CNOT6 mutation correlated to 'RPPA_CHIERARCHICAL'.
KCNH2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
NLRC5 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
EPHA5 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
LRRC43 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
PTPN4 mutation correlated to 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
STK38 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
TUBE1 mutation correlated to 'RPPA_CHIERARCHICAL'.
RINT1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
TIGD7 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TERF2 mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
ARHGEF17 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
FLG mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SAFB mutation correlated to 'RPPA_CHIERARCHICAL'.
CD93 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
ERBB4 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
CREM mutation correlated to 'RPPA_CHIERARCHICAL'.
ANAPC1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
EYA4 mutation correlated to 'RPPA_CNMF'.
H2AFY2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.
RDX mutation correlated to 'RPPA_CHIERARCHICAL'.
TAF7L mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
OPLAH mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
ACACB mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CHRNB3 mutation correlated to 'MIRSEQ_CNMF'.
CLGN mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
MYCT1 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
PIGT mutation correlated to 'METHLYATION_CNMF'.
SBF1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
AGBL5 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
NDST2 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
GFOD1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
KIAA1462 mutation correlated to 'MIRSEQ_CNMF'.
OGFRL1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
PHF20 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
FAM186B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
EPB49 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.
LARP1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MLH1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
MAN2B1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
EAF2 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
FAM82A1 mutation correlated to 'RPPA_CNMF'.
PIWIL2 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.
KCTD21 mutation correlated to 'MIRSEQ_CNMF'.
ITSN2 mutation correlated to 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
GLYR1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
PHACTR1 mutation correlated to 'RPPA_CHIERARCHICAL'.
STAU2 mutation correlated to 'RPPA_CHIERARCHICAL'.
SLC4A3 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
RAI1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PPP2R3B mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SLC45A4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KIAA1609 mutation correlated to 'CN_CNMF'.
ZMYM5 mutation correlated to 'RPPA_CNMF'.
MCM4 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
C19ORF26 mutation correlated to 'MIRSEQ_MATURE_CNMF'.
NARG2 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
MMEL1 mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
DYX1C1 mutation correlated to 'RPPA_CHIERARCHICAL'.
ABCA5 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
NOB1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.
ELL2 mutation correlated to 'MRNASEQ_CNMF'.
MUT mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
NT5DC1 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
FBN3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ENOSF1 mutation correlated to 'RPPA_CHIERARCHICAL'.
SLC22A16 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
KCNC1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
MZF1 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.
MGA mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GTF3C4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
GPATCH4 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
NOS3 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
ELOVL2 mutation correlated to 'RPPA_CHIERARCHICAL'.
SMARCAL1 mutation correlated to 'METHLYATION_CNMF'.
SLC38A6 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
BCL9 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CLIP1 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
AMPD3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
DMC1 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
USP8 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
GPR114 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
PTPRJ mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
BRD3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
FANCE mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
DUSP9 mutation correlated to 'RPPA_CHIERARCHICAL'.
AKAP11 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
EXOSC8 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
ZNF292 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SCN9A mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
KANK4 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
DQX1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.
CYP7B1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
C3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ATRIP mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
CDC5L mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
SMAD2 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
IDE mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
PCBP2 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
CBLN3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
AP3M2 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
HOOK1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
DUSP11 mutation correlated to 'RPPA_CHIERARCHICAL'.
CNKSR1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
PPARGC1B mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TMEM79 mutation correlated to 'METHLYATION_CNMF'.
MON2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MAP1A mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KIAA1539 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
CEACAM3 mutation correlated to 'MRNASEQ_CNMF'.
NUPL2 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
WAPAL mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
BTRC mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
GPC4 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
GANAB mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
RNMT mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
EPHB6 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
PNPLA7 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
NAA16 mutation correlated to 'MIRSEQ_CNMF'.
NF1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
GALK1 mutation correlated to 'RPPA_CHIERARCHICAL'.
CHGB mutation correlated to 'RPPA_CHIERARCHICAL'.
TCF7 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
PIAS3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
SLC12A1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
SPATA5L1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
SYCP2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CNGA4 mutation correlated to 'RPPA_CHIERARCHICAL'.
ACTG2 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
FIGNL1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
PARP15 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
GIMAP7 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
PRKAR1B mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.
CLCNKB mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
LSS mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
LCE1A mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
PRSS48 mutation correlated to 'CN_CNMF'.
FGF13 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GPRASP1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
RERE mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PPP1R13B mutation correlated to 'RPPA_CNMF'.
LRP12 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ATP8B1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
NAA35 mutation correlated to 'RPPA_CHIERARCHICAL'.
DNAH7 mutation correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ELK3 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
HIST1H1A mutation correlated to 'RPPA_CHIERARCHICAL'.
ACSS2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
ZBTB40 mutation correlated to 'METHLYATION_CNMF'.
CASKIN2 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.
TRIM27 mutation correlated to 'MIRSEQ_CNMF'.
KYNU mutation correlated to 'MRNASEQ_CNMF'.
TM6SF1 mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
WDTC1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
NEK8 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TRIP11 mutation correlated to 'RPPA_CNMF'.
KIAA0586 mutation correlated to 'RPPA_CNMF'.
PPM1H mutation correlated to 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
COL20A1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
POMT1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MYO7A mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
EPB41L5 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ARHGAP29 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
SLC23A3 mutation correlated to 'RPPA_CHIERARCHICAL'.
WDR60 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
GCDH mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
PLEKHH3 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KRT222 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
TSPYL5 mutation correlated to 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
COX8C mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
IKBKAP mutation correlated to 'MRNASEQ_CNMF'.
DDX50 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
KIDINS220 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TRIM46 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
GIGYF2 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CSNK1G3 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
C10ORF120 mutation correlated to 'RPPA_CHIERARCHICAL'.
PIK3R1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
DGKD mutation correlated to 'MRNASEQ_CNMF'.
RDBP mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
LUC7L3 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
ROCK1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
WWP2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
STAT6 mutation correlated to 'RPPA_CHIERARCHICAL'.
CELSR1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MACF1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
DYRK1A mutation correlated to 'MIRSEQ_CNMF'.
TXLNG mutation correlated to 'RPPA_CHIERARCHICAL'.
OR10J3 mutation correlated to 'RPPA_CNMF'.
ZMIZ1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MMP10 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
HDAC4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CNTROB mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
SP100 mutation correlated to 'RPPA_CHIERARCHICAL'.
ZNF334 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
GABRD mutation correlated to 'MIRSEQ_MATURE_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
LENG1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
TBC1D23 mutation correlated to 'RPPA_CHIERARCHICAL'.
EPHA10 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
EHBP1 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
NUAK1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
IGHMBP2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
PIK3C2G mutation correlated to 'MIRSEQ_CNMF'.
SLC2A12 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
ARID3A mutation correlated to 'MIRSEQ_CNMF'.
WSB2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ROBO2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GPATCH8 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CPD mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
RFX5 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
FER mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
SNRPA mutation correlated to 'MRNASEQ_CNMF'.
C2ORF43 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CNMF'.
TMEM109 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SRRT mutation correlated to 'MIRSEQ_CNMF'.
NOL6 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
AKR7A2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
TNKS1BP1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CALCRL mutation correlated to 'CN_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
OSBPL2 mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
KLHL14 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
USP28 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
C19ORF70 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SLA mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
FOXA3 mutation correlated to 'RPPA_CHIERARCHICAL'.
CSNK1G1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SLC7A13 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
SPAG17 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PDS5B mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
ITGAV mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
FBXO32 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
CHST9 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CCDC25 mutation correlated to 'RPPA_CHIERARCHICAL'.
TOP1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
THBS1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
SH3D19 mutation correlated to 'RPPA_CHIERARCHICAL'.
CCDC30 mutation correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
C11ORF63 mutation correlated to 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
LRRC52 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
TOX mutation correlated to 'RPPA_CNMF'.
FBXO34 mutation correlated to 'MRNASEQ_CNMF'.
CAB39L mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
VASH1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
HECA mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TMEM39A mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
CLCA4 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
DENND1C mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
OR4M2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
USP13 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MAGI2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
SETD2 mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
APOA1BP mutation correlated to 'RPPA_CHIERARCHICAL'.
TRPV2 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
EEA1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
RGS12 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
DISP2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ZNF711 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MAN1C1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PHKG2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
PCCA mutation correlated to 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KDM3B mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
FOXJ1 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
EML3 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.
DHX29 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MIRSEQ_CNMF'.
TH1L mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PDE1B mutation correlated to 'RPPA_CHIERARCHICAL'.

Results

Overview of the results

Table 1. Get Full Table Overview of the association between mutation status of 788 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 2510 significant findings detected.


		Clinical Features	CN CNMF	METHLYATION CNMF	RPPA CNMF	RPPA CHIERARCHICAL	MRNASEQ CNMF	MRNASEQ CHIERARCHICAL	MIRSEQ CNMF	MIRSEQ CHIERARCHICAL	MIRSEQ MATURE CNMF	MIRSEQ MATURE CHIERARCHICAL
	nMutated (%)	nWild-Type	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test
RNF43	49 (17%)	240	1e-05 (0.00118)	1e-05 (0.00118)	0.00147 (0.0226)	5e-05 (0.00334)	1e-05 (0.00118)	1e-05 (0.00118)	1e-05 (0.00118)	1e-05 (0.00118)	0.00276 (0.0325)	4e-05 (0.00287)
XYLT2	32 (11%)	257	0.00021 (0.00704)	1e-05 (0.00118)	0.00401 (0.0396)	0.00029 (0.00859)	0.00012 (0.00525)	0.00028 (0.00839)	0.00227 (0.0299)	0.00015 (0.00568)	0.0122 (0.0735)	0.0034 (0.0358)
MLL2	59 (20%)	230	1e-05 (0.00118)	1e-05 (0.00118)	7e-05 (0.00388)	1e-05 (0.00118)	1e-05 (0.00118)	5e-05 (0.00334)	1e-05 (0.00118)	4e-05 (0.00287)	0.00128 (0.0208)	3e-05 (0.00246)
EPHA2	23 (8%)	266	0.0238 (0.103)	0.014 (0.0791)	0.0197 (0.0946)	0.00075 (0.0152)	8e-05 (0.00423)	3e-05 (0.00246)	0.00031 (0.00895)	0.00061 (0.0134)	0.00178 (0.026)	0.00065 (0.0137)
PGM5	25 (9%)	264	0.00026 (0.008)	1e-05 (0.00118)	0.00866 (0.062)	0.00024 (0.00775)	3e-05 (0.00246)	1e-05 (0.00118)	0.00117 (0.0199)	0.00021 (0.00704)	0.00498 (0.0448)	0.00259 (0.0318)
ADNP2	18 (6%)	271	0.0102 (0.0666)	0.00045 (0.011)	0.0168 (0.0861)	4e-05 (0.00287)	0.00012 (0.00525)	0.00111 (0.0194)	8e-05 (0.00423)	8e-05 (0.00423)	0.0453 (0.15)	0.0213 (0.0988)
CCDC108	25 (9%)	264	0.00194 (0.0271)	0.00147 (0.0226)	0.01 (0.066)	0.00042 (0.0106)	2e-05 (0.00188)	2e-05 (0.00188)	0.00014 (0.00552)	0.0001 (0.00489)	0.00234 (0.0303)	0.0438 (0.147)
SLC12A7	18 (6%)	271	0.0325 (0.126)	0.00295 (0.0335)	0.0399 (0.141)	0.00989 (0.0657)	0.00488 (0.0443)	0.00349 (0.0364)	0.00368 (0.0376)	0.00985 (0.0656)	0.038 (0.136)	0.00274 (0.0324)
ARID1A	90 (31%)	199	1e-05 (0.00118)	1e-05 (0.00118)	0.0286 (0.116)	8e-05 (0.00423)	1e-05 (0.00118)	0.00323 (0.0349)	1e-05 (0.00118)	0.00045 (0.011)	0.21 (0.358)	0.00269 (0.0323)
MLL4	38 (13%)	251	1e-05 (0.00118)	1e-05 (0.00118)	0.109 (0.246)	0.00428 (0.041)	7e-05 (0.00388)	1e-05 (0.00118)	1e-05 (0.00118)	0.00022 (0.00728)	0.0289 (0.116)	0.00046 (0.0112)
HLA-B	20 (7%)	269	0.00127 (0.0207)	9e-05 (0.00458)	0.0125 (0.0744)	0.00534 (0.0467)	0.00018 (0.00636)	0.00802 (0.0587)	0.00014 (0.00552)	0.0181 (0.0907)	0.157 (0.302)	0.00628 (0.0512)
ZBTB20	28 (10%)	261	6e-05 (0.00372)	9e-05 (0.00458)	0.252 (0.399)	0.00415 (0.0403)	1e-05 (0.00118)	2e-05 (0.00188)	1e-05 (0.00118)	0.0002 (0.00688)	0.00285 (0.0329)	0.00813 (0.0593)
HLA-A	15 (5%)	274	0.0378 (0.136)	0.0184 (0.0916)	0.0167 (0.086)	0.00013 (0.00542)	0.0129 (0.0756)	0.00039 (0.0102)	0.00055 (0.0126)	0.0186 (0.092)	0.261 (0.406)	0.00973 (0.0652)
PIK3CA	57 (20%)	232	1e-05 (0.00118)	1e-05 (0.00118)	0.00021 (0.00704)	0.0005 (0.0118)	3e-05 (0.00246)	0.13 (0.27)	0.0231 (0.102)	0.0001 (0.00489)	0.00028 (0.00839)	3e-05 (0.00246)
JARID2	28 (10%)	261	1e-05 (0.00118)	0.00028 (0.00839)	0.0225 (0.101)	4e-05 (0.00287)	1e-05 (0.00118)	1e-05 (0.00118)	0.00153 (0.0233)	0.00192 (0.0269)	0.206 (0.355)	0.00984 (0.0656)
PAX6	19 (7%)	270	0.0264 (0.11)	0.00086 (0.0168)	0.0487 (0.155)	0.00764 (0.0567)	0.00112 (0.0194)	0.00418 (0.0405)	0.00012 (0.00525)	0.00652 (0.0524)	0.00681 (0.0539)	0.166 (0.31)
KIAA0182	20 (7%)	269	0.00936 (0.0641)	0.0669 (0.186)	0.0238 (0.103)	1e-05 (0.00118)	0.0484 (0.154)	0.00134 (0.0212)	0.00035 (0.00958)	0.00175 (0.0258)	0.0111 (0.0695)	0.0204 (0.0968)
ATP6V1B1	20 (7%)	269	0.0037 (0.0377)	0.00034 (0.00947)	0.00463 (0.0428)	0.07 (0.19)	0.00455 (0.0424)	0.00446 (0.042)	1e-05 (0.00118)	0.00132 (0.0211)	0.00156 (0.0235)	0.0358 (0.133)
BCORL1	20 (7%)	269	0.00041 (0.0105)	0.00192 (0.0269)	0.0125 (0.0744)	7e-05 (0.00388)	1e-05 (0.00118)	0.00183 (0.0265)	4e-05 (0.00287)	0.00038 (0.0102)	0.089 (0.218)	0.00354 (0.0367)
ZFHX4	53 (18%)	236	5e-05 (0.00334)	0.00081 (0.0161)	0.0913 (0.22)	0.00194 (0.0271)	1e-05 (0.00118)	0.00098 (0.0181)	6e-05 (0.00372)	0.00099 (0.0182)	0.0126 (0.0746)	0.00011 (0.00507)
KIAA0195	16 (6%)	273	0.017 (0.0871)	0.00033 (0.00925)	0.0498 (0.157)	1e-05 (0.00118)	0.00066 (0.0139)	0.00011 (0.00507)	0.00489 (0.0443)	0.00232 (0.0302)	0.0718 (0.192)	0.00026 (0.008)
PLEKHA5	15 (5%)	274	0.00749 (0.0563)	0.00041 (0.0105)	0.0435 (0.147)	0.015 (0.0818)	0.00048 (0.0115)	0.00821 (0.0597)	0.00018 (0.00636)	0.00042 (0.0106)	0.122 (0.26)	0.00092 (0.0175)
WDR7	17 (6%)	272	0.00025 (0.00791)	0.0165 (0.0854)	0.00364 (0.0374)	0.00188 (0.0268)	0.0213 (0.0988)	0.0278 (0.113)	0.00407 (0.04)	0.0274 (0.112)	0.136 (0.279)	0.0402 (0.142)
MLL3	42 (15%)	247	0.00057 (0.0129)	0.0001 (0.00489)	0.00768 (0.057)	0.00143 (0.0223)	0.00467 (0.043)	0.00035 (0.00958)	0.00036 (0.00975)	0.0002 (0.00688)	0.125 (0.265)	0.0108 (0.0685)
ARFGEF1	24 (8%)	265	0.0028 (0.0326)	0.00042 (0.0106)	0.00242 (0.0309)	3e-05 (0.00246)	1e-05 (0.00118)	0.00011 (0.00507)	1e-05 (0.00118)	4e-05 (0.00287)	0.07 (0.19)	0.00466 (0.043)
CAMTA2	16 (6%)	273	0.001 (0.0182)	0.00057 (0.0129)	0.127 (0.267)	0.00619 (0.0508)	0.0195 (0.0938)	0.0405 (0.142)	0.00697 (0.0544)	0.03 (0.119)	0.00239 (0.0307)	0.00323 (0.0349)
NLRC5	19 (7%)	270	0.00032 (0.00904)	0.00235 (0.0304)	0.00575 (0.0488)	0.00207 (0.0283)	0.0002 (0.00688)	0.0169 (0.0864)	0.0259 (0.108)	0.00206 (0.0282)	0.013 (0.0757)	0.0647 (0.183)
SLC45A4	18 (6%)	271	0.0156 (0.0829)	0.00017 (0.00609)	0.0112 (0.0699)	0.00064 (0.0136)	0.022 (0.0995)	0.0168 (0.0862)	0.0296 (0.118)	0.0424 (0.145)	0.0902 (0.219)	0.0304 (0.12)
MGA	24 (8%)	265	0.0018 (0.0262)	0.00013 (0.00542)	0.00289 (0.0331)	0.00055 (0.0126)	1e-05 (0.00118)	0.00565 (0.0483)	1e-05 (0.00118)	4e-05 (0.00287)	0.152 (0.295)	0.0444 (0.148)
PTPRJ	24 (8%)	265	0.00059 (0.0132)	0.0104 (0.0674)	0.0499 (0.157)	0.00639 (0.0517)	1e-05 (0.00118)	0.0342 (0.13)	1e-05 (0.00118)	0.00186 (0.0267)	0.0209 (0.0979)	0.0517 (0.16)
RERE	20 (7%)	269	0.0015 (0.0229)	0.00029 (0.00859)	0.0352 (0.132)	0.00068 (0.0142)	2e-05 (0.00188)	2e-05 (0.00188)	0.00027 (0.00828)	0.00353 (0.0367)	0.142 (0.287)	0.0269 (0.111)
WDTC1	15 (5%)	274	0.00295 (0.0335)	0.00469 (0.0431)	0.0376 (0.136)	0.00191 (0.0269)	1e-05 (0.00118)	0.00034 (0.00947)	0.00221 (0.0296)	0.00465 (0.043)	0.0918 (0.221)	0.0475 (0.153)
HDAC4	22 (8%)	267	0.00061 (0.0134)	2e-05 (0.00188)	0.00919 (0.0635)	1e-05 (0.00118)	6e-05 (0.00372)	1e-05 (0.00118)	0.00061 (0.0134)	6e-05 (0.00372)	0.249 (0.396)	0.00822 (0.0598)
LARP4B	27 (9%)	262	0.00053 (0.0124)	1e-05 (0.00118)	0.0399 (0.141)	0.00013 (0.00542)	0.00677 (0.0537)	0.00315 (0.0344)	0.00055 (0.0126)	0.00035 (0.00958)	0.184 (0.33)	0.0907 (0.22)
B2M	17 (6%)	272	0.00031 (0.00895)	0.00243 (0.031)	0.123 (0.263)	0.00711 (0.055)	0.0009 (0.0172)	0.00307 (0.034)	0.0139 (0.0786)	0.00591 (0.0496)	0.339 (0.483)	0.0405 (0.142)
CDH1	29 (10%)	260	0.00013 (0.00542)	4e-05 (0.00287)	0.101 (0.235)	0.0956 (0.228)	0.0006 (0.0133)	0.00012 (0.00525)	0.00121 (0.02)	1e-05 (0.00118)	0.00873 (0.0623)	0.00659 (0.0527)
CIC	26 (9%)	263	0.00082 (0.0162)	0.00082 (0.0162)	0.0574 (0.171)	0.00298 (0.0336)	0.0219 (0.0995)	0.00587 (0.0494)	0.0053 (0.0464)	0.00048 (0.0115)	0.399 (0.54)	0.0097 (0.0652)
CDC14A	15 (5%)	274	0.0125 (0.0744)	0.00561 (0.0483)	0.0313 (0.122)	0.00271 (0.0323)	0.00301 (0.0337)	0.0038 (0.0382)	1e-05 (0.00118)	0.00061 (0.0134)	0.206 (0.355)	0.183 (0.329)
BTBD7	17 (6%)	272	0.00995 (0.0658)	0.00225 (0.0297)	0.0846 (0.211)	0.00643 (0.0519)	0.0105 (0.0675)	0.0004 (0.0103)	0.00025 (0.00791)	0.00167 (0.0248)	0.0491 (0.156)	0.333 (0.478)
EIF5B	18 (6%)	271	0.00537 (0.0468)	0.0122 (0.0738)	0.0266 (0.11)	1e-05 (0.00118)	0.00395 (0.0394)	0.00884 (0.0625)	0.00017 (0.00609)	0.00087 (0.0169)	0.205 (0.353)	0.0661 (0.185)
ZFHX3	38 (13%)	251	0.00225 (0.0297)	9e-05 (0.00458)	0.018 (0.0902)	3e-05 (0.00246)	0.0001 (0.00489)	0.00054 (0.0126)	1e-05 (0.00118)	0.00487 (0.0443)	0.119 (0.258)	0.123 (0.263)
STAB1	28 (10%)	261	0.00017 (0.00609)	3e-05 (0.00246)	0.00197 (0.0273)	1e-05 (0.00118)	8e-05 (0.00423)	0.00012 (0.00525)	0.00022 (0.00728)	0.00673 (0.0535)	0.646 (0.738)	0.184 (0.331)
SVIL	26 (9%)	263	0.00149 (0.0228)	0.00016 (0.00598)	0.0494 (0.156)	0.0374 (0.136)	0.00051 (0.012)	0.00109 (0.0192)	0.00512 (0.0454)	0.0477 (0.153)	0.215 (0.363)	0.0852 (0.212)
CR1	25 (9%)	264	0.00463 (0.0428)	0.0555 (0.168)	0.0423 (0.145)	0.011 (0.0691)	2e-05 (0.00188)	0.00015 (0.00568)	1e-05 (0.00118)	0.0011 (0.0193)	0.0371 (0.135)	0.0905 (0.219)
RABGAP1	20 (7%)	269	0.00133 (0.0212)	2e-05 (0.00188)	0.0089 (0.0625)	0.00017 (0.00609)	1e-05 (0.00118)	2e-05 (0.00188)	0.00014 (0.00552)	0.00147 (0.0226)	0.199 (0.346)	0.0583 (0.172)
ALPK2	19 (7%)	270	0.00028 (0.00839)	0.049 (0.155)	0.784 (0.85)	0.0161 (0.0841)	0.0367 (0.135)	0.00292 (0.0333)	0.00402 (0.0396)	0.00231 (0.0302)	0.00869 (0.0622)	0.16 (0.305)
KIAA1967	17 (6%)	272	7e-05 (0.00388)	0.00014 (0.00552)	0.00948 (0.0645)	0.00245 (0.031)	2e-05 (0.00188)	0.00045 (0.011)	0.00297 (0.0336)	0.00144 (0.0223)	0.614 (0.711)	0.432 (0.566)
ZC3H13	29 (10%)	260	0.00056 (0.0128)	7e-05 (0.00388)	0.0049 (0.0444)	1e-05 (0.00118)	0.00067 (0.0141)	4e-05 (0.00287)	2e-05 (0.00188)	0.015 (0.0818)	0.134 (0.277)	0.103 (0.239)
HIVEP1	22 (8%)	267	0.0316 (0.123)	0.00341 (0.0358)	0.156 (0.302)	0.0388 (0.138)	0.00346 (0.0363)	0.00035 (0.00958)	0.0143 (0.08)	7e-05 (0.00388)	0.302 (0.447)	0.00178 (0.026)
RBM6	20 (7%)	269	0.0316 (0.123)	0.00292 (0.0333)	0.0273 (0.112)	3e-05 (0.00246)	0.00023 (0.00749)	3e-05 (0.00246)	0.00063 (0.0135)	0.00348 (0.0364)	0.0926 (0.223)	0.078 (0.201)
UHRF1BP1	15 (5%)	274	0.00102 (0.0184)	0.00668 (0.0532)	0.292 (0.437)	0.0012 (0.02)	0.00282 (0.0327)	0.0657 (0.184)	0.0135 (0.0774)	0.015 (0.0818)	0.00318 (0.0346)	0.00337 (0.0358)
PPL	16 (6%)	273	0.229 (0.375)	0.059 (0.173)	0.0121 (0.0731)	0.00083 (0.0164)	0.00039 (0.0102)	0.00371 (0.0378)	0.00011 (0.00507)	0.0287 (0.116)	0.0353 (0.132)	0.0013 (0.021)
LRP1	30 (10%)	259	0.00316 (0.0344)	0.00299 (0.0336)	0.124 (0.263)	2e-05 (0.00188)	0.00269 (0.0323)	0.00612 (0.0505)	0.0005 (0.0118)	0.00272 (0.0323)	0.286 (0.43)	0.0228 (0.101)
UBXN6	12 (4%)	277	0.0155 (0.0829)	0.0002 (0.00688)	0.0464 (0.152)	0.00305 (0.0339)	0.0301 (0.12)	0.0655 (0.184)	0.00615 (0.0505)	0.0289 (0.116)	0.00098 (0.0181)	0.0532 (0.163)
KCNJ10	11 (4%)	278	0.0256 (0.108)	0.00282 (0.0327)	0.167 (0.312)	1e-05 (0.00118)	0.00137 (0.0215)	0.00671 (0.0534)	0.00326 (0.035)	0.00607 (0.0504)	0.493 (0.615)	0.0161 (0.0841)
EPHA5	27 (9%)	262	0.138 (0.281)	0.00836 (0.0606)	0.00397 (0.0395)	0.0823 (0.208)	0.0162 (0.0845)	0.00596 (0.0499)	0.0198 (0.0949)	0.0315 (0.123)	0.023 (0.102)	0.00919 (0.0635)
FAM186B	10 (3%)	279	0.0418 (0.144)	0.0208 (0.0977)	0.033 (0.127)	0.00036 (0.00975)	0.0291 (0.117)	0.278 (0.423)	0.00743 (0.0561)	0.0108 (0.0685)	0.615 (0.713)	0.0242 (0.104)
FBN3	28 (10%)	261	0.0324 (0.125)	0.0147 (0.081)	0.805 (0.863)	0.00135 (0.0212)	9e-05 (0.00458)	0.00093 (0.0176)	0.00028 (0.00839)	0.0021 (0.0284)	0.153 (0.297)	0.028 (0.114)
BRD3	16 (6%)	273	0.0162 (0.0844)	0.0097 (0.0652)	0.0755 (0.198)	0.00452 (0.0423)	7e-05 (0.00388)	0.00109 (0.0192)	0.00011 (0.00507)	0.0132 (0.0761)	0.0222 (0.1)	0.429 (0.564)
CELSR1	35 (12%)	254	2e-05 (0.00188)	0.00164 (0.0244)	0.0306 (0.121)	0.00128 (0.0208)	0.00565 (0.0483)	0.00093 (0.0176)	4e-05 (0.00287)	0.0154 (0.0828)	0.684 (0.769)	0.339 (0.483)
MACF1	45 (16%)	244	0.138 (0.282)	0.00163 (0.0243)	0.00341 (0.0358)	0.00903 (0.0631)	0.0149 (0.0815)	0.0145 (0.0808)	0.00226 (0.0298)	0.00891 (0.0625)	0.0524 (0.161)	0.0277 (0.113)
ZMIZ1	15 (5%)	274	0.00337 (0.0358)	0.0021 (0.0284)	0.0431 (0.146)	0.0128 (0.0754)	0.0316 (0.123)	0.0121 (0.0732)	0.0128 (0.0755)	0.0155 (0.0829)	0.712 (0.79)	0.698 (0.78)
TP53	138 (48%)	151	1e-05 (0.00118)	1e-05 (0.00118)	0.273 (0.419)	0.678 (0.764)	2e-05 (0.00188)	0.0469 (0.153)	1e-05 (0.00118)	1e-05 (0.00118)	0.159 (0.305)	0.00015 (0.00568)
LMAN1	19 (7%)	270	0.00191 (0.0269)	0.0317 (0.123)	0.136 (0.279)	0.0484 (0.154)	0.00254 (0.0316)	0.00132 (0.0211)	0.0001 (0.00489)	0.0022 (0.0295)	0.0861 (0.213)	0.077 (0.199)
MVK	13 (4%)	276	0.0709 (0.191)	0.00095 (0.0177)	0.0185 (0.0918)	8e-05 (0.00423)	0.0314 (0.122)	0.0119 (0.0725)	0.0089 (0.0625)	0.0122 (0.0734)	0.288 (0.432)	0.711 (0.79)
MBD6	23 (8%)	266	0.00715 (0.055)	0.00473 (0.0432)	0.109 (0.246)	0.00111 (0.0194)	0.00055 (0.0126)	0.00453 (0.0423)	0.0234 (0.102)	0.126 (0.265)	0.182 (0.328)	0.012 (0.0728)
SNAPC2	11 (4%)	278	0.143 (0.288)	0.0125 (0.0746)	0.0106 (0.0678)	6e-05 (0.00372)	0.00064 (0.0136)	0.00246 (0.0311)	0.00511 (0.0453)	0.0408 (0.142)	0.165 (0.31)	0.697 (0.779)
BCL9L	24 (8%)	265	0.0596 (0.174)	0.00959 (0.0648)	0.0188 (0.0923)	0.00044 (0.0108)	0.0006 (0.0133)	0.00026 (0.008)	0.00073 (0.0149)	0.00187 (0.0268)	0.264 (0.409)	0.149 (0.294)
BCOR	21 (7%)	268	0.00018 (0.00636)	7e-05 (0.00388)	0.0168 (0.0862)	0.00468 (0.0431)	0.0105 (0.0678)	0.0614 (0.177)	0.00112 (0.0194)	0.0106 (0.0679)	0.743 (0.815)	0.194 (0.34)
TBX4	11 (4%)	278	0.0423 (0.145)	0.0152 (0.0819)	0.128 (0.268)	0.0374 (0.136)	0.00262 (0.0319)	0.0158 (0.0833)	0.0224 (0.101)	0.0416 (0.144)	0.582 (0.689)	0.117 (0.255)
AKAP13	28 (10%)	261	0.456 (0.587)	0.00432 (0.0413)	0.0824 (0.208)	0.00013 (0.00542)	0.0751 (0.197)	0.0007 (0.0144)	4e-05 (0.00287)	0.0094 (0.0641)	0.0275 (0.113)	0.0238 (0.103)
C14ORF43	20 (7%)	269	0.00037 (0.00998)	5e-05 (0.00334)	0.259 (0.404)	1e-05 (0.00118)	0.00973 (0.0652)	0.0216 (0.0993)	0.00256 (0.0318)	0.00118 (0.0199)	0.494 (0.616)	0.0786 (0.202)
PAFAH1B1	12 (4%)	277	0.0257 (0.108)	0.0145 (0.0805)	0.0348 (0.131)	0.00079 (0.0158)	0.0203 (0.0966)	0.0111 (0.0695)	0.0185 (0.0918)	0.172 (0.318)	0.923 (0.961)	0.561 (0.673)
WNT16	13 (4%)	276	0.00769 (0.057)	0.0119 (0.0725)	0.127 (0.268)	0.00415 (0.0403)	0.00015 (0.00568)	0.0187 (0.0921)	0.00094 (0.0176)	0.00176 (0.0258)	0.279 (0.424)	0.064 (0.182)
ZNF878	12 (4%)	277	0.0252 (0.107)	0.00011 (0.00507)	0.0525 (0.162)	3e-05 (0.00246)	0.0002 (0.00688)	0.00026 (0.008)	0.00226 (0.0298)	0.0226 (0.101)	0.493 (0.615)	0.352 (0.494)
CCDC88A	20 (7%)	269	0.0193 (0.0933)	0.00094 (0.0176)	0.104 (0.239)	0.0226 (0.101)	0.0019 (0.0268)	0.0109 (0.0686)	1e-05 (0.00118)	0.0034 (0.0358)	0.251 (0.398)	0.0946 (0.226)
PYGO2	7 (2%)	282	0.248 (0.395)	0.00921 (0.0635)	0.506 (0.628)	0.0437 (0.147)	0.00923 (0.0636)	0.00157 (0.0236)	0.00727 (0.0556)	0.07 (0.19)	0.0204 (0.0967)	0.0237 (0.103)
FLNB	24 (8%)	265	0.00031 (0.00895)	7e-05 (0.00388)	0.448 (0.579)	0.00523 (0.0459)	0.0084 (0.0608)	0.00718 (0.0551)	0.0547 (0.166)	0.00211 (0.0285)	0.0806 (0.205)	0.0171 (0.0875)
GCC2	10 (3%)	279	0.0239 (0.103)	0.0436 (0.147)	0.0115 (0.0708)	0.0155 (0.0829)	7e-05 (0.00388)	0.174 (0.319)	0.00736 (0.056)	0.0106 (0.0678)	0.862 (0.91)	0.159 (0.304)
ARID1B	27 (9%)	262	0.00144 (0.0223)	0.00886 (0.0625)	0.102 (0.237)	0.0229 (0.102)	0.00231 (0.0302)	0.149 (0.294)	0.0117 (0.0718)	0.00206 (0.0282)	0.145 (0.29)	0.0141 (0.0794)
ATP2A1	15 (5%)	274	0.00378 (0.0381)	0.0006 (0.0133)	0.0716 (0.192)	0.105 (0.24)	0.00044 (0.0108)	0.00102 (0.0184)	0.0134 (0.0768)	0.042 (0.145)	0.13 (0.27)	6e-05 (0.00372)
C5ORF42	27 (9%)	262	0.184 (0.33)	0.00026 (0.008)	0.00862 (0.0618)	1e-05 (0.00118)	0.00015 (0.00568)	0.00064 (0.0136)	0.0283 (0.115)	0.00957 (0.0648)	0.32 (0.465)	0.15 (0.295)
DNAH5	56 (19%)	233	0.0331 (0.127)	0.00062 (0.0135)	0.406 (0.546)	0.0684 (0.188)	0.00277 (0.0325)	0.074 (0.196)	0.00052 (0.0122)	0.00054 (0.0126)	0.0294 (0.117)	0.00563 (0.0483)
SBNO1	17 (6%)	272	0.122 (0.26)	0.0086 (0.0617)	0.0216 (0.0993)	0.0152 (0.0822)	0.0021 (0.0284)	0.00129 (0.0209)	0.0223 (0.1)	0.00607 (0.0504)	0.16 (0.305)	0.107 (0.243)
ELF3	11 (4%)	278	0.0424 (0.145)	0.159 (0.304)	0.0534 (0.163)	0.00107 (0.019)	0.0096 (0.0648)	0.408 (0.547)	0.0004 (0.0103)	0.0059 (0.0496)	0.0205 (0.0968)	0.0205 (0.0971)
ITPR2	25 (9%)	264	0.0336 (0.128)	0.0326 (0.126)	0.127 (0.268)	7e-05 (0.00388)	0.00025 (0.00791)	0.00757 (0.0565)	0.00339 (0.0358)	0.0262 (0.109)	0.401 (0.541)	0.0511 (0.159)
PGBD1	12 (4%)	277	0.0157 (0.083)	0.0424 (0.145)	0.0328 (0.126)	0.00115 (0.0196)	0.0513 (0.159)	0.023 (0.102)	0.0189 (0.0923)	0.0226 (0.101)	0.28 (0.424)	0.117 (0.255)
ADAMTSL4	15 (5%)	274	0.021 (0.0982)	0.00888 (0.0625)	0.0955 (0.228)	0.00271 (0.0323)	0.00359 (0.0371)	0.00026 (0.008)	0.00021 (0.00704)	0.042 (0.145)	0.591 (0.696)	0.11 (0.247)
MAP7D3	16 (6%)	273	0.0184 (0.0915)	0.0261 (0.109)	0.385 (0.524)	0.00011 (0.00507)	0.0353 (0.132)	0.0238 (0.103)	0.0148 (0.0813)	0.00267 (0.0322)	0.273 (0.419)	0.366 (0.508)
EXO1	16 (6%)	273	0.0166 (0.0855)	0.00011 (0.00507)	0.138 (0.281)	1e-05 (0.00118)	0.00858 (0.0617)	0.00316 (0.0344)	0.00676 (0.0536)	0.0103 (0.0669)	0.496 (0.617)	0.262 (0.407)
DCHS1	29 (10%)	260	0.297 (0.442)	0.00099 (0.0182)	0.00186 (0.0267)	0.00039 (0.0102)	0.0234 (0.102)	0.0125 (0.0746)	0.0182 (0.0909)	0.123 (0.262)	0.363 (0.506)	0.00419 (0.0405)
IRS1	20 (7%)	269	0.0197 (0.0945)	0.0397 (0.141)	0.0314 (0.122)	0.0284 (0.115)	0.00898 (0.0628)	0.0484 (0.154)	0.00881 (0.0625)	0.0716 (0.192)	0.438 (0.57)	0.211 (0.36)
TNK2	11 (4%)	278	0.219 (0.368)	0.149 (0.294)	0.0421 (0.145)	0.265 (0.41)	0.0278 (0.113)	0.0249 (0.105)	0.0306 (0.121)	0.0454 (0.15)	0.0117 (0.0718)	0.0278 (0.113)
ANAPC1	13 (4%)	276	0.023 (0.102)	0.00891 (0.0625)	0.113 (0.249)	0.00016 (0.00598)	0.00021 (0.00704)	0.0378 (0.136)	0.0432 (0.146)	0.232 (0.377)	0.254 (0.4)	0.0269 (0.111)
GLYR1	13 (4%)	276	0.0948 (0.226)	0.0194 (0.0938)	0.0208 (0.0977)	0.00104 (0.0186)	0.454 (0.585)	0.0227 (0.101)	0.0343 (0.13)	0.0161 (0.0841)	0.0467 (0.152)	0.477 (0.603)
AMPD3	19 (7%)	270	0.0178 (0.0897)	0.00024 (0.00775)	0.0982 (0.231)	0.00134 (0.0212)	0.001 (0.0182)	0.00818 (0.0596)	0.00134 (0.0212)	0.0277 (0.113)	0.38 (0.521)	0.187 (0.333)
ZNF292	21 (7%)	268	0.0009 (0.0172)	0.00886 (0.0625)	0.0953 (0.227)	3e-05 (0.00246)	1e-05 (0.00118)	0.00055 (0.0126)	0.00097 (0.018)	0.0007 (0.0144)	0.229 (0.375)	0.15 (0.295)
GPRASP1	15 (5%)	274	0.0461 (0.152)	0.00188 (0.0268)	0.0279 (0.114)	0.104 (0.239)	0.0382 (0.137)	0.208 (0.357)	0.0101 (0.0665)	0.0154 (0.0828)	0.405 (0.545)	0.0219 (0.0995)
LRP12	23 (8%)	266	0.0564 (0.17)	0.149 (0.294)	0.0829 (0.208)	0.0217 (0.0995)	0.0346 (0.13)	0.0482 (0.154)	5e-05 (0.00334)	0.00642 (0.0519)	0.0312 (0.122)	0.00745 (0.0562)
ATP8B1	15 (5%)	274	0.0311 (0.122)	0.00649 (0.0522)	0.0545 (0.166)	0.00062 (0.0135)	0.0768 (0.199)	0.00422 (0.0407)	0.00245 (0.031)	0.0432 (0.146)	0.0218 (0.0995)	0.0869 (0.214)
EPHA10	13 (4%)	276	0.0218 (0.0995)	0.0153 (0.0824)	0.00926 (0.0637)	0.0107 (0.0681)	0.232 (0.377)	0.0185 (0.0918)	0.0343 (0.13)	0.00189 (0.0268)	0.248 (0.395)	0.127 (0.267)
ROBO2	31 (11%)	258	0.0106 (0.0678)	0.00288 (0.0331)	0.793 (0.854)	0.0372 (0.135)	0.00303 (0.0339)	0.0472 (0.153)	0.0332 (0.127)	0.0636 (0.181)	0.0551 (0.167)	0.0119 (0.0727)
GPATCH8	23 (8%)	266	0.0019 (0.0268)	0.237 (0.383)	0.0473 (0.153)	0.00688 (0.054)	0.00287 (0.0331)	0.0141 (0.0795)	0.024 (0.103)	0.176 (0.321)	0.137 (0.281)	0.00728 (0.0556)
SPAG17	22 (8%)	267	0.331 (0.475)	0.0124 (0.0744)	0.428 (0.563)	0.00363 (0.0374)	0.0083 (0.0602)	0.0127 (0.075)	4e-05 (0.00287)	0.00044 (0.0108)	0.0742 (0.196)	0.0183 (0.0912)
DISP2	15 (5%)	274	0.0234 (0.102)	0.00044 (0.0108)	0.278 (0.423)	0.00308 (0.034)	0.00248 (0.0312)	0.0718 (0.192)	0.00101 (0.0183)	0.00479 (0.0437)	0.146 (0.291)	0.0297 (0.118)
PTEN	23 (8%)	266	0.00081 (0.0161)	0.00135 (0.0212)	0.0752 (0.197)	0.0691 (0.189)	0.00049 (0.0116)	0.484 (0.609)	0.0104 (0.0673)	0.0131 (0.076)	0.0651 (0.184)	0.0047 (0.0431)
FRMD4A	18 (6%)	271	0.0513 (0.159)	6e-05 (0.00372)	0.225 (0.373)	0.0149 (0.0815)	0.00902 (0.0631)	0.00414 (0.0403)	0.0077 (0.057)	0.0428 (0.146)	0.376 (0.517)	0.351 (0.493)
APC	42 (15%)	247	0.254 (0.4)	0.166 (0.311)	0.0303 (0.12)	0.00059 (0.0132)	0.00949 (0.0645)	0.00022 (0.00728)	0.00017 (0.00609)	0.0297 (0.118)	0.0642 (0.182)	0.0781 (0.201)
CD4	15 (5%)	274	0.00931 (0.0638)	0.00209 (0.0284)	0.0135 (0.0774)	0.191 (0.337)	0.142 (0.288)	0.00308 (0.034)	0.022 (0.0995)	0.149 (0.294)	0.0172 (0.0878)	0.508 (0.629)
ZC3H18	18 (6%)	271	0.127 (0.267)	0.0219 (0.0995)	0.0338 (0.129)	0.0208 (0.0977)	0.00569 (0.0485)	0.00373 (0.0379)	0.00953 (0.0647)	0.0904 (0.219)	0.0697 (0.189)	0.0665 (0.186)
MSH6	19 (7%)	270	0.0151 (0.0819)	0.0228 (0.101)	0.434 (0.567)	0.0036 (0.0371)	0.0151 (0.0819)	0.00653 (0.0525)	0.161 (0.306)	0.0263 (0.109)	0.359 (0.501)	0.355 (0.497)
DDX17	11 (4%)	278	0.0408 (0.142)	0.0365 (0.134)	0.032 (0.124)	0.0284 (0.115)	0.0288 (0.116)	0.275 (0.421)	0.168 (0.313)	0.0455 (0.15)	0.203 (0.352)	0.44 (0.571)
PAX2	9 (3%)	280	0.209 (0.358)	0.0365 (0.134)	0.0394 (0.14)	0.00014 (0.00552)	0.00282 (0.0327)	0.0748 (0.197)	0.0211 (0.0982)	0.119 (0.258)	0.626 (0.719)	0.0189 (0.0923)
INPPL1	22 (8%)	267	0.00199 (0.0275)	0.00337 (0.0358)	0.109 (0.246)	0.00153 (0.0233)	0.00021 (0.00704)	0.0718 (0.192)	6e-05 (0.00372)	0.00112 (0.0194)	0.126 (0.267)	0.0739 (0.196)
C6ORF89	9 (3%)	280	0.453 (0.584)	0.019 (0.0926)	0.239 (0.385)	0.0197 (0.0945)	0.0263 (0.109)	0.00661 (0.0528)	0.152 (0.296)	0.0215 (0.0992)	0.0773 (0.2)	0.00089 (0.0171)
VPS13A	32 (11%)	257	0.0232 (0.102)	0.0934 (0.224)	0.238 (0.384)	0.00015 (0.00568)	0.0188 (0.0923)	0.0457 (0.15)	0.00739 (0.056)	0.265 (0.41)	0.064 (0.182)	0.00638 (0.0517)
SPG20	21 (7%)	268	0.0109 (0.0687)	0.00518 (0.0457)	0.117 (0.256)	0.0521 (0.161)	0.00094 (0.0176)	0.0748 (0.197)	0.00797 (0.0585)	0.0243 (0.104)	0.322 (0.466)	0.0141 (0.0793)
FHOD3	26 (9%)	263	0.0437 (0.147)	5e-05 (0.00334)	0.444 (0.575)	0.0902 (0.219)	0.0832 (0.209)	0.022 (0.0995)	0.00134 (0.0212)	0.00381 (0.0382)	0.099 (0.232)	0.0195 (0.094)
TP53BP2	14 (5%)	275	0.226 (0.374)	0.0187 (0.092)	0.32 (0.464)	0.0428 (0.146)	0.00249 (0.0312)	0.00873 (0.0623)	0.00017 (0.00609)	0.00069 (0.0143)	0.381 (0.522)	0.183 (0.33)
FILIP1L	17 (6%)	272	0.129 (0.269)	0.0259 (0.108)	0.0291 (0.117)	1e-05 (0.00118)	0.00656 (0.0526)	0.00407 (0.04)	0.0228 (0.101)	0.0716 (0.192)	0.571 (0.682)	0.187 (0.332)
EIF4G3	15 (5%)	274	0.157 (0.302)	0.00629 (0.0513)	0.11 (0.246)	0.0298 (0.119)	0.00198 (0.0274)	0.00826 (0.06)	0.0128 (0.0754)	0.0189 (0.0924)	0.436 (0.568)	0.0584 (0.172)
MFRP	12 (4%)	277	0.099 (0.232)	0.00126 (0.0206)	0.112 (0.249)	0.00127 (0.0207)	0.00262 (0.0319)	0.0119 (0.0725)	0.011 (0.0693)	0.029 (0.117)	0.24 (0.387)	0.247 (0.394)
ATXN2L	17 (6%)	272	0.0168 (0.0862)	0.00231 (0.0302)	0.348 (0.491)	0.00032 (0.00904)	0.00958 (0.0648)	0.00085 (0.0166)	0.0034 (0.0358)	0.0718 (0.192)	0.422 (0.558)	0.679 (0.764)
OSBP2	11 (4%)	278	0.0415 (0.144)	0.0348 (0.131)	0.565 (0.676)	0.0212 (0.0985)	0.0533 (0.163)	0.00258 (0.0318)	0.00304 (0.0339)	0.0451 (0.149)	0.259 (0.404)	0.169 (0.315)
PCGF3	6 (2%)	283	0.22 (0.37)	0.0219 (0.0995)	0.482 (0.607)	0.00189 (0.0268)	0.0117 (0.0718)	0.0143 (0.0799)	0.0155 (0.0829)	0.121 (0.26)	0.0427 (0.146)	0.159 (0.304)
ZNF608	15 (5%)	274	0.00196 (0.0273)	0.00101 (0.0183)	0.341 (0.485)	0.00272 (0.0323)	0.00539 (0.0469)	0.103 (0.238)	0.01 (0.066)	0.0418 (0.144)	0.365 (0.507)	0.245 (0.392)
SYNJ2	17 (6%)	272	0.0343 (0.13)	0.187 (0.332)	0.027 (0.111)	0.0236 (0.103)	0.0131 (0.0759)	0.0745 (0.196)	0.00341 (0.0358)	0.0641 (0.182)	0.0968 (0.229)	0.0173 (0.088)
BTBD11	20 (7%)	269	0.182 (0.328)	0.00068 (0.0142)	0.22 (0.369)	0.524 (0.64)	0.0199 (0.0949)	0.0744 (0.196)	0.00242 (0.0309)	0.00038 (0.0102)	0.00062 (0.0135)	0.0368 (0.135)
CDK12	19 (7%)	270	0.149 (0.294)	0.0532 (0.163)	0.00012 (0.00525)	0.0018 (0.0262)	0.00059 (0.0132)	0.355 (0.497)	0.0259 (0.108)	0.225 (0.373)	0.0311 (0.122)	0.0232 (0.102)
GPR124	13 (4%)	276	0.222 (0.371)	0.033 (0.127)	0.298 (0.443)	0.0072 (0.0552)	0.004 (0.0396)	0.0548 (0.167)	0.0004 (0.0103)	0.0123 (0.074)	0.0978 (0.231)	0.0454 (0.15)
COL12A1	46 (16%)	243	0.123 (0.261)	0.00186 (0.0267)	0.112 (0.249)	0.0455 (0.15)	0.1 (0.235)	0.00507 (0.0452)	2e-05 (0.00188)	0.0282 (0.115)	0.0679 (0.187)	0.0115 (0.0708)
PLXNA2	23 (8%)	266	0.143 (0.288)	0.0863 (0.213)	0.00355 (0.0368)	1e-05 (0.00118)	0.00074 (0.015)	0.00572 (0.0487)	0.00032 (0.00904)	0.0196 (0.0945)	0.171 (0.318)	0.0507 (0.158)
EDNRB	25 (9%)	264	0.373 (0.515)	0.00281 (0.0327)	0.164 (0.31)	2e-05 (0.00188)	0.00309 (0.0341)	0.0156 (0.0829)	0.00115 (0.0196)	0.0147 (0.081)	0.124 (0.263)	0.189 (0.334)
FAM70B	13 (4%)	276	0.0427 (0.146)	0.00229 (0.0301)	0.23 (0.376)	0.129 (0.269)	0.0379 (0.136)	0.00476 (0.0435)	0.00907 (0.0631)	0.0127 (0.075)	0.321 (0.466)	0.175 (0.32)
C12ORF51	30 (10%)	259	0.00025 (0.00791)	5e-05 (0.00334)	0.232 (0.377)	0.00106 (0.0189)	0.0176 (0.0888)	0.0174 (0.0882)	0.0253 (0.107)	0.0704 (0.19)	0.408 (0.547)	0.581 (0.689)
HDLBP	24 (8%)	265	0.00684 (0.0539)	0.0636 (0.181)	0.0725 (0.193)	0.51 (0.63)	0.00025 (0.00791)	0.0213 (0.0988)	7e-05 (0.00388)	0.00813 (0.0593)	0.403 (0.543)	0.0114 (0.0703)
CHST15	13 (4%)	276	0.0734 (0.195)	0.0026 (0.0319)	0.0223 (0.1)	0.0158 (0.0833)	0.00716 (0.055)	0.0219 (0.0995)	0.0343 (0.13)	0.115 (0.253)	0.296 (0.441)	0.742 (0.814)
YLPM1	18 (6%)	271	0.00944 (0.0643)	0.00855 (0.0616)	0.0412 (0.143)	0.0056 (0.0483)	0.0711 (0.191)	0.224 (0.373)	0.00196 (0.0273)	0.0421 (0.145)	0.133 (0.274)	0.132 (0.273)
SAP130	11 (4%)	278	0.0656 (0.184)	0.00312 (0.0343)	0.857 (0.907)	0.00026 (0.008)	0.0016 (0.024)	0.0113 (0.0703)	0.00852 (0.0614)	0.00599 (0.0501)	0.0623 (0.179)	0.298 (0.443)
MPRIP	14 (5%)	275	0.0486 (0.155)	0.00494 (0.0446)	0.128 (0.268)	0.00348 (0.0364)	0.134 (0.276)	0.0379 (0.136)	0.0115 (0.0708)	0.0333 (0.127)	0.594 (0.699)	0.382 (0.523)
PUS7	10 (3%)	279	0.0426 (0.146)	0.159 (0.305)	0.0467 (0.152)	0.0279 (0.114)	0.00966 (0.0652)	0.0473 (0.153)	0.0111 (0.0695)	0.0571 (0.171)	0.598 (0.702)	0.713 (0.791)
TIGD7	8 (3%)	281	0.112 (0.248)	0.00279 (0.0326)	0.383 (0.523)	0.00212 (0.0286)	0.00472 (0.0432)	0.00625 (0.0511)	0.036 (0.133)	0.0431 (0.146)	0.446 (0.577)	0.272 (0.418)
SBF1	28 (10%)	261	0.00312 (0.0343)	0.012 (0.0728)	0.172 (0.318)	0.256 (0.401)	0.0282 (0.115)	0.00443 (0.042)	0.0237 (0.103)	0.0253 (0.107)	0.123 (0.263)	0.103 (0.239)
MAN2B1	16 (6%)	273	0.0136 (0.0774)	0.00245 (0.031)	0.0783 (0.201)	0.0551 (0.167)	0.00069 (0.0143)	0.00429 (0.041)	0.00088 (0.017)	0.00238 (0.0307)	0.407 (0.546)	0.193 (0.34)
PPP2R3B	15 (5%)	274	0.0103 (0.0669)	0.135 (0.278)	0.571 (0.682)	0.0056 (0.0483)	0.00095 (0.0177)	0.0464 (0.152)	0.00011 (0.00507)	0.00528 (0.0463)	0.406 (0.546)	0.138 (0.281)
ABCA5	18 (6%)	271	0.797 (0.857)	0.124 (0.263)	0.421 (0.558)	0.0212 (0.0985)	0.00806 (0.059)	0.021 (0.0982)	0.00354 (0.0367)	0.0487 (0.155)	0.00317 (0.0345)	0.459 (0.589)
SLC22A16	11 (4%)	278	0.025 (0.106)	0.0142 (0.0797)	0.0877 (0.216)	0.00439 (0.0417)	0.018 (0.0903)	0.0674 (0.187)	0.036 (0.133)	0.0452 (0.15)	0.127 (0.267)	0.283 (0.427)
AKAP11	14 (5%)	275	0.225 (0.373)	0.115 (0.253)	0.0146 (0.081)	0.0156 (0.083)	0.0219 (0.0995)	0.0138 (0.0783)	0.0464 (0.152)	0.0337 (0.128)	0.0687 (0.189)	0.141 (0.286)
MON2	14 (5%)	275	0.00428 (0.041)	0.0278 (0.113)	0.373 (0.514)	0.00049 (0.0116)	0.045 (0.149)	0.344 (0.488)	0.0231 (0.102)	0.0405 (0.142)	0.587 (0.693)	0.334 (0.478)
MAP1A	15 (5%)	274	0.39 (0.529)	0.0379 (0.136)	0.0573 (0.171)	0.00298 (0.0336)	0.0469 (0.153)	0.016 (0.084)	0.0106 (0.0678)	0.06 (0.175)	0.261 (0.406)	0.0397 (0.141)
PNPLA7	20 (7%)	269	0.356 (0.498)	0.00759 (0.0565)	0.0911 (0.22)	0.0947 (0.226)	0.0042 (0.0406)	0.00429 (0.041)	0.0487 (0.155)	0.0492 (0.156)	0.0813 (0.207)	0.0129 (0.0755)
NF1	24 (8%)	265	0.00257 (0.0318)	0.0077 (0.057)	0.0977 (0.231)	0.0007 (0.0144)	0.213 (0.362)	0.0269 (0.111)	0.0197 (0.0946)	0.0413 (0.143)	0.507 (0.628)	0.121 (0.26)
KIDINS220	16 (6%)	273	0.473 (0.6)	0.11 (0.247)	0.0636 (0.181)	0.0194 (0.0938)	0.0976 (0.23)	0.00044 (0.0108)	0.00094 (0.0176)	0.0131 (0.076)	0.0289 (0.116)	0.00937 (0.0641)
TRIM46	12 (4%)	277	0.315 (0.46)	0.00314 (0.0344)	0.366 (0.508)	0.0278 (0.113)	0.00416 (0.0404)	0.0119 (0.0726)	0.0106 (0.0679)	0.0289 (0.116)	0.222 (0.371)	0.255 (0.401)
ROCK1	16 (6%)	273	0.118 (0.257)	0.00563 (0.0483)	0.0751 (0.197)	0.0467 (0.152)	0.0146 (0.081)	0.00707 (0.055)	0.032 (0.124)	0.0304 (0.12)	0.89 (0.932)	0.389 (0.528)
WSB2	9 (3%)	280	0.112 (0.248)	0.0631 (0.181)	0.00931 (0.0638)	0.00012 (0.00525)	0.024 (0.103)	0.0756 (0.198)	0.00124 (0.0204)	0.121 (0.26)	0.0268 (0.111)	0.0379 (0.136)
TMEM109	8 (3%)	281	0.222 (0.371)	0.0347 (0.131)	0.239 (0.385)	0.00608 (0.0504)	0.00266 (0.0322)	0.0748 (0.197)	0.0369 (0.135)	0.0431 (0.146)	0.282 (0.426)	0.043 (0.146)
TNKS1BP1	19 (7%)	270	0.00986 (0.0656)	0.0254 (0.107)	0.37 (0.512)	0.0142 (0.0797)	0.00631 (0.0514)	0.116 (0.253)	0.00401 (0.0396)	0.249 (0.396)	0.492 (0.615)	0.0266 (0.11)
KLHL14	17 (6%)	272	0.0163 (0.0847)	0.00714 (0.055)	0.0408 (0.142)	0.0294 (0.118)	0.00072 (0.0148)	0.0407 (0.142)	0.0643 (0.182)	0.0633 (0.181)	0.857 (0.907)	0.553 (0.665)
EEA1	12 (4%)	277	0.0243 (0.104)	0.00115 (0.0196)	0.0634 (0.181)	0.0621 (0.179)	0.00023 (0.00749)	0.0422 (0.145)	0.00222 (0.0296)	0.0229 (0.102)	0.255 (0.401)	0.155 (0.3)
MAN1C1	8 (3%)	281	0.111 (0.248)	0.0148 (0.0814)	0.0806 (0.205)	0.00787 (0.058)	0.0238 (0.103)	0.0158 (0.0834)	0.00242 (0.0309)	0.0443 (0.148)	0.323 (0.467)	0.117 (0.255)
KLF3	19 (7%)	270	0.0219 (0.0995)	0.00064 (0.0136)	0.126 (0.266)	0.0047 (0.0431)	0.0337 (0.128)	0.00408 (0.04)	0.205 (0.353)	0.251 (0.398)	0.207 (0.357)	0.689 (0.772)
FBXW7	27 (9%)	262	0.00059 (0.0132)	0.00015 (0.00568)	0.128 (0.268)	0.0168 (0.0862)	0.00186 (0.0267)	0.0505 (0.158)	0.0284 (0.115)	0.0944 (0.226)	0.0588 (0.173)	0.248 (0.395)
CTCF	18 (6%)	271	0.00084 (0.0165)	0.0185 (0.0918)	0.837 (0.89)	0.108 (0.245)	0.00359 (0.0371)	0.141 (0.286)	0.00289 (0.0331)	0.0214 (0.0989)	0.154 (0.298)	0.11 (0.246)
ZBTB7C	15 (5%)	274	0.0315 (0.123)	2e-05 (0.00188)	0.038 (0.136)	0.0438 (0.147)	0.28 (0.425)	0.0146 (0.081)	0.0674 (0.187)	0.151 (0.295)	0.0957 (0.228)	0.0685 (0.188)
NLK	12 (4%)	277	0.0999 (0.234)	0.0194 (0.0938)	0.492 (0.615)	0.00089 (0.0171)	0.0483 (0.154)	0.0674 (0.187)	0.00104 (0.0186)	0.00297 (0.0336)	0.101 (0.236)	0.0761 (0.198)
ZMYM4	17 (6%)	272	0.12 (0.259)	0.035 (0.131)	0.206 (0.355)	0.00894 (0.0626)	0.0451 (0.149)	0.165 (0.31)	0.0138 (0.0783)	0.016 (0.0838)	0.441 (0.572)	0.242 (0.388)
GLI1	17 (6%)	272	0.00581 (0.0492)	0.00554 (0.0481)	0.344 (0.488)	0.0805 (0.205)	0.00224 (0.0297)	0.0151 (0.0819)	0.19 (0.335)	0.013 (0.0757)	0.322 (0.466)	0.11 (0.247)
GXYLT1	12 (4%)	277	0.055 (0.167)	0.0204 (0.0967)	0.0344 (0.13)	0.0384 (0.138)	0.0183 (0.0911)	0.246 (0.393)	0.0111 (0.0695)	0.171 (0.318)	0.262 (0.407)	0.254 (0.4)
C7ORF50	10 (3%)	279	0.127 (0.267)	0.00121 (0.02)	0.173 (0.318)	0.00106 (0.0189)	0.00376 (0.038)	0.00134 (0.0212)	0.0108 (0.0686)	0.0568 (0.171)	0.757 (0.828)	0.172 (0.318)
C9ORF131	13 (4%)	276	0.015 (0.0817)	0.0145 (0.0808)	0.581 (0.689)	0.0174 (0.0882)	0.0661 (0.185)	0.0257 (0.108)	0.0454 (0.15)	0.232 (0.377)	0.471 (0.599)	0.79 (0.853)
CR2	20 (7%)	269	0.0914 (0.22)	0.0916 (0.221)	0.0471 (0.153)	0.0198 (0.0949)	0.00119 (0.0199)	0.00259 (0.0318)	0.00013 (0.00542)	0.0505 (0.158)	0.132 (0.273)	0.178 (0.323)
RTN2	11 (4%)	278	0.0265 (0.11)	0.0354 (0.132)	0.2 (0.347)	0.0563 (0.17)	0.0239 (0.103)	0.31 (0.456)	0.0374 (0.136)	0.0445 (0.148)	0.127 (0.268)	0.392 (0.531)
TFE3	8 (3%)	281	0.194 (0.34)	0.0149 (0.0815)	0.427 (0.562)	0.0407 (0.142)	0.102 (0.238)	0.0473 (0.153)	0.0251 (0.106)	0.0429 (0.146)	0.52 (0.637)	0.117 (0.255)
ABCC4	17 (6%)	272	0.00956 (0.0648)	0.0653 (0.184)	0.216 (0.365)	0.235 (0.38)	0.0228 (0.101)	0.00334 (0.0357)	0.00368 (0.0376)	0.472 (0.599)	0.0874 (0.215)	0.0241 (0.103)
SETDB2	10 (3%)	279	0.287 (0.431)	0.0594 (0.174)	0.0401 (0.141)	0.0319 (0.124)	0.0004 (0.0103)	0.143 (0.288)	0.0108 (0.0684)	0.0104 (0.0674)	0.72 (0.795)	0.321 (0.466)
RASA1	17 (6%)	272	0.327 (0.471)	0.0918 (0.221)	0.0188 (0.0923)	0.0109 (0.0688)	0.00017 (0.00609)	0.00014 (0.00552)	0.00023 (0.00749)	0.139 (0.283)	0.669 (0.755)	0.435 (0.568)
ZCCHC6	13 (4%)	276	0.0159 (0.0836)	0.232 (0.377)	0.357 (0.499)	0.0038 (0.0382)	0.0598 (0.175)	0.0385 (0.138)	4e-05 (0.00287)	0.00176 (0.0258)	0.175 (0.32)	0.0739 (0.196)
STAT5B	12 (4%)	277	0.328 (0.472)	0.149 (0.294)	0.0436 (0.147)	0.00247 (0.0311)	0.00905 (0.0631)	0.00758 (0.0565)	0.039 (0.139)	0.379 (0.52)	0.757 (0.828)	0.156 (0.301)
PAMR1	17 (6%)	272	0.0531 (0.163)	0.0123 (0.0742)	0.0146 (0.0809)	0.0114 (0.0706)	0.129 (0.269)	0.143 (0.288)	0.00378 (0.0381)	0.0155 (0.0828)	0.687 (0.771)	0.146 (0.292)
RB1CC1	10 (3%)	279	0.0243 (0.104)	0.00615 (0.0505)	0.239 (0.385)	0.0483 (0.154)	0.00409 (0.0401)	0.0483 (0.154)	0.185 (0.331)	0.343 (0.487)	0.13 (0.27)	0.249 (0.396)
TRIP10	8 (3%)	281	0.189 (0.334)	0.0305 (0.12)	0.0201 (0.0957)	0.143 (0.288)	0.0233 (0.102)	0.0762 (0.198)	0.0244 (0.104)	0.167 (0.312)	0.198 (0.345)	0.0265 (0.11)
CTNND1	19 (7%)	270	8e-05 (0.00423)	0.00013 (0.00542)	0.487 (0.611)	0.165 (0.31)	0.00189 (0.0268)	0.065 (0.183)	0.0814 (0.207)	0.00046 (0.0112)	0.209 (0.358)	0.019 (0.0925)
WNK4	21 (7%)	268	0.014 (0.079)	0.0226 (0.101)	0.0331 (0.127)	0.0156 (0.0829)	0.0595 (0.174)	0.214 (0.363)	0.0258 (0.108)	0.148 (0.293)	0.226 (0.373)	0.717 (0.794)
FAM113B	13 (4%)	276	0.0235 (0.103)	0.00748 (0.0563)	0.199 (0.346)	0.0137 (0.0779)	0.00169 (0.025)	0.318 (0.463)	0.00415 (0.0403)	0.114 (0.25)	0.234 (0.379)	0.428 (0.563)
TP53BP1	16 (6%)	273	0.0325 (0.126)	0.0442 (0.148)	0.478 (0.603)	0.19 (0.335)	4e-05 (0.00287)	0.293 (0.438)	0.00688 (0.054)	0.021 (0.0982)	0.284 (0.428)	0.327 (0.471)
DNAJC1	11 (4%)	278	0.0262 (0.109)	0.0119 (0.0727)	0.238 (0.384)	0.0372 (0.135)	0.00584 (0.0494)	0.025 (0.106)	0.0614 (0.177)	0.104 (0.239)	0.982 (1.00)	0.65 (0.741)
ATM	30 (10%)	259	0.106 (0.241)	0.00091 (0.0174)	0.42 (0.557)	0.0961 (0.228)	0.00394 (0.0394)	0.0576 (0.171)	0.00876 (0.0624)	0.00552 (0.048)	0.145 (0.29)	0.0429 (0.146)
IRS4	23 (8%)	266	0.0791 (0.203)	0.00104 (0.0186)	0.127 (0.268)	0.0001 (0.00489)	0.0567 (0.17)	0.0164 (0.0849)	0.0475 (0.153)	0.0124 (0.0744)	0.527 (0.643)	0.231 (0.377)
POP1	19 (7%)	270	0.664 (0.75)	0.202 (0.349)	0.0582 (0.172)	0.0112 (0.0699)	0.0385 (0.138)	0.0308 (0.121)	0.00062 (0.0135)	0.0186 (0.092)	0.186 (0.332)	0.512 (0.632)
CASD1	11 (4%)	278	0.0586 (0.173)	0.00132 (0.0211)	0.209 (0.358)	0.00246 (0.0311)	0.00535 (0.0467)	0.0684 (0.188)	0.0243 (0.104)	0.0451 (0.149)	0.166 (0.311)	0.0744 (0.196)
CLDN6	7 (2%)	282	0.107 (0.243)	0.00369 (0.0377)	0.278 (0.423)	0.0241 (0.103)	0.203 (0.351)	0.0355 (0.132)	0.0535 (0.164)	0.353 (0.495)	0.0112 (0.0699)	0.0499 (0.157)
SOX7	12 (4%)	277	0.0574 (0.171)	0.07 (0.19)	0.00354 (0.0367)	0.169 (0.315)	0.0386 (0.138)	0.133 (0.275)	0.00012 (0.00525)	0.00326 (0.035)	0.00689 (0.054)	0.696 (0.778)
FYB	11 (4%)	278	0.221 (0.37)	0.0184 (0.0916)	0.173 (0.318)	0.0002 (0.00688)	0.0845 (0.211)	0.0109 (0.0689)	0.0252 (0.107)	0.048 (0.154)	0.446 (0.577)	0.161 (0.306)
IKBKE	12 (4%)	277	0.055 (0.167)	0.0901 (0.219)	0.145 (0.29)	0.0258 (0.108)	0.00264 (0.032)	0.0108 (0.0686)	0.0106 (0.0679)	0.00308 (0.034)	0.132 (0.273)	0.0706 (0.19)
ZNF43	23 (8%)	266	0.167 (0.312)	0.0328 (0.126)	0.846 (0.898)	0.126 (0.266)	6e-05 (0.00372)	0.0775 (0.2)	0.00118 (0.0199)	0.004 (0.0396)	0.00713 (0.055)	0.109 (0.246)
EBF3	12 (4%)	277	0.33 (0.474)	0.00272 (0.0323)	0.138 (0.281)	0.00073 (0.0149)	0.00565 (0.0483)	0.0255 (0.107)	0.0377 (0.136)	0.06 (0.175)	0.6 (0.703)	0.534 (0.65)
RCOR3	12 (4%)	277	0.0286 (0.116)	0.00115 (0.0196)	0.108 (0.245)	0.00168 (0.0249)	0.00078 (0.0157)	0.0147 (0.081)	0.221 (0.371)	0.0591 (0.173)	0.642 (0.734)	0.432 (0.566)
GON4L	10 (3%)	279	0.0176 (0.0888)	0.00225 (0.0297)	0.01 (0.0661)	0.00486 (0.0443)	0.00436 (0.0416)	0.278 (0.423)	0.0828 (0.208)	0.0576 (0.171)	0.596 (0.701)	0.15 (0.295)
SLC26A7	14 (5%)	275	0.106 (0.241)	0.386 (0.526)	0.0639 (0.182)	0.0442 (0.148)	0.00601 (0.0502)	0.00426 (0.0409)	0.0471 (0.153)	0.211 (0.359)	0.0989 (0.232)	0.0051 (0.0453)
C15ORF52	8 (3%)	281	0.112 (0.248)	0.00353 (0.0367)	0.0688 (0.189)	0.0418 (0.144)	0.162 (0.307)	0.0788 (0.202)	0.0362 (0.134)	0.0442 (0.148)	0.0267 (0.111)	0.097 (0.23)
HAUS6	11 (4%)	278	0.163 (0.309)	0.0406 (0.142)	0.0765 (0.199)	0.00068 (0.0142)	0.202 (0.35)	0.0421 (0.145)	0.00859 (0.0617)	0.0448 (0.149)	0.282 (0.426)	0.194 (0.34)
RUSC2	19 (7%)	270	0.0525 (0.161)	0.004 (0.0396)	0.246 (0.393)	0.00812 (0.0593)	0.00644 (0.0519)	0.0223 (0.1)	0.00157 (0.0236)	0.104 (0.239)	0.189 (0.334)	0.0771 (0.199)
GRK4	5 (2%)	284	0.602 (0.704)	0.0131 (0.076)	0.427 (0.562)	0.00522 (0.0459)	0.0232 (0.102)	0.0492 (0.156)	0.0304 (0.12)	0.25 (0.397)	0.719 (0.795)	0.0826 (0.208)
KIRREL2	12 (4%)	277	0.103 (0.238)	0.0381 (0.137)	0.128 (0.269)	0.0279 (0.114)	0.173 (0.318)	0.038 (0.136)	0.0103 (0.0671)	0.0609 (0.176)	0.278 (0.423)	0.0353 (0.132)
PADI3	12 (4%)	277	0.0912 (0.22)	0.00235 (0.0304)	0.0293 (0.117)	0.00277 (0.0325)	0.0593 (0.174)	0.0124 (0.0744)	0.00221 (0.0296)	0.172 (0.318)	0.598 (0.702)	0.512 (0.632)
KCNH3	16 (6%)	273	0.00668 (0.0532)	9e-05 (0.00458)	0.277 (0.423)	0.00078 (0.0157)	0.0137 (0.0779)	0.00455 (0.0424)	0.113 (0.25)	0.162 (0.307)	0.0563 (0.17)	0.053 (0.163)
CD93	11 (4%)	278	0.222 (0.371)	0.0187 (0.092)	0.0287 (0.116)	0.00146 (0.0226)	0.185 (0.331)	0.0473 (0.153)	0.0248 (0.105)	0.128 (0.268)	0.268 (0.413)	0.75 (0.822)
OPLAH	14 (5%)	275	0.054 (0.165)	0.0761 (0.198)	0.00793 (0.0583)	0.00016 (0.00598)	0.0246 (0.105)	0.0189 (0.0923)	0.0242 (0.104)	0.179 (0.324)	0.637 (0.729)	0.795 (0.855)
ACACB	28 (10%)	261	0.00249 (0.0312)	0.00028 (0.00839)	0.165 (0.31)	0.00012 (0.00525)	0.00109 (0.0192)	0.157 (0.302)	0.0677 (0.187)	0.0104 (0.0674)	0.309 (0.454)	0.145 (0.29)
OGFRL1	10 (3%)	279	0.186 (0.331)	0.229 (0.375)	0.00449 (0.0422)	0.00712 (0.055)	0.0486 (0.155)	0.0227 (0.101)	0.00683 (0.0539)	0.0766 (0.199)	0.622 (0.717)	0.881 (0.926)
RAI1	23 (8%)	266	0.082 (0.207)	0.0338 (0.129)	0.184 (0.33)	0.0237 (0.103)	0.213 (0.362)	0.0157 (0.083)	0.00778 (0.0574)	0.0123 (0.0742)	0.208 (0.357)	0.182 (0.329)
GTF3C4	12 (4%)	277	0.0045 (0.0423)	0.00568 (0.0485)	0.186 (0.332)	0.0089 (0.0625)	0.0126 (0.0748)	0.142 (0.288)	0.0386 (0.138)	0.113 (0.249)	0.297 (0.442)	0.169 (0.315)
BCL9	19 (7%)	270	0.329 (0.473)	0.0846 (0.211)	0.177 (0.322)	0.00799 (0.0586)	0.0027 (0.0323)	0.0157 (0.0831)	0.00459 (0.0426)	0.034 (0.129)	0.18 (0.326)	0.257 (0.402)
WAPAL	13 (4%)	276	0.0283 (0.115)	0.0691 (0.189)	0.314 (0.459)	0.371 (0.513)	0.0189 (0.0923)	0.243 (0.389)	0.00424 (0.0408)	0.0407 (0.142)	0.584 (0.69)	0.00735 (0.056)
GPC4	9 (3%)	280	0.662 (0.749)	0.0442 (0.148)	0.295 (0.44)	0.141 (0.286)	0.0292 (0.117)	0.00033 (0.00925)	0.0117 (0.0716)	0.0215 (0.0991)	0.119 (0.257)	0.112 (0.249)
EPHB6	11 (4%)	278	0.36 (0.503)	0.0385 (0.138)	0.0217 (0.0993)	0.00014 (0.00552)	0.00585 (0.0494)	0.00258 (0.0318)	0.384 (0.524)	0.284 (0.428)	0.405 (0.545)	0.127 (0.268)
SYCP2	15 (5%)	274	0.0965 (0.229)	0.103 (0.239)	0.0434 (0.147)	0.00279 (0.0326)	0.0669 (0.186)	0.00197 (0.0273)	0.00011 (0.00507)	0.0194 (0.0938)	0.281 (0.425)	0.074 (0.196)
DNAH7	42 (15%)	247	0.825 (0.88)	0.256 (0.402)	0.375 (0.516)	0.147 (0.293)	0.038 (0.136)	0.00843 (0.0609)	0.00017 (0.00609)	0.00502 (0.0451)	0.23 (0.376)	0.00154 (0.0234)
POMT1	12 (4%)	277	0.0583 (0.172)	0.0287 (0.116)	0.231 (0.376)	0.0683 (0.188)	0.00029 (0.00859)	0.038 (0.136)	0.0187 (0.0921)	0.0214 (0.0988)	0.246 (0.392)	0.0863 (0.213)
MYO7A	15 (5%)	274	0.328 (0.472)	0.0128 (0.0755)	0.0413 (0.143)	0.00788 (0.058)	0.0129 (0.0756)	0.0506 (0.158)	0.187 (0.333)	0.149 (0.294)	0.0306 (0.121)	0.239 (0.385)
EPB41L5	8 (3%)	281	0.113 (0.249)	0.11 (0.246)	0.468 (0.597)	0.00049 (0.0116)	0.0232 (0.102)	0.00121 (0.02)	0.0362 (0.134)	0.0453 (0.15)	0.0809 (0.206)	0.389 (0.529)
DDX50	11 (4%)	278	0.0839 (0.21)	0.0151 (0.0819)	0.492 (0.615)	0.0183 (0.0911)	0.0108 (0.0685)	0.0667 (0.186)	0.0371 (0.135)	0.0405 (0.142)	0.106 (0.241)	0.206 (0.354)
WWP2	12 (4%)	277	0.00453 (0.0423)	0.025 (0.106)	0.00074 (0.015)	0.0914 (0.22)	0.0003 (0.00879)	0.676 (0.762)	0.0186 (0.092)	0.171 (0.318)	0.0503 (0.158)	0.269 (0.415)
CPD	9 (3%)	280	0.209 (0.358)	0.00625 (0.0511)	0.386 (0.525)	7e-05 (0.00388)	0.00161 (0.0241)	0.00682 (0.0539)	0.00123 (0.0203)	0.121 (0.259)	0.52 (0.637)	0.259 (0.404)
NOL6	17 (6%)	272	0.08 (0.204)	0.00013 (0.00542)	0.119 (0.258)	0.0432 (0.146)	0.0349 (0.131)	0.00684 (0.0539)	0.00344 (0.0361)	0.22 (0.369)	0.604 (0.705)	0.503 (0.625)
SLC7A13	9 (3%)	280	0.035 (0.131)	0.00587 (0.0494)	0.108 (0.245)	0.0204 (0.0968)	0.0435 (0.147)	0.277 (0.423)	0.0213 (0.0988)	0.12 (0.259)	0.635 (0.727)	0.494 (0.615)
FBXO32	7 (2%)	282	0.25 (0.397)	0.021 (0.0982)	0.551 (0.663)	0.00039 (0.0102)	0.00969 (0.0652)	0.00144 (0.0223)	0.00712 (0.055)	0.0682 (0.188)	0.623 (0.718)	0.489 (0.612)
CAB39L	8 (3%)	281	0.0497 (0.157)	0.00374 (0.0379)	0.577 (0.686)	0.0165 (0.0854)	0.037 (0.135)	0.00412 (0.0403)	0.224 (0.373)	0.215 (0.363)	0.546 (0.66)	0.33 (0.475)
HECA	12 (4%)	277	0.00615 (0.0505)	0.109 (0.245)	0.217 (0.366)	0.259 (0.404)	7e-05 (0.00388)	0.0385 (0.138)	7e-05 (0.00388)	0.00299 (0.0336)	0.581 (0.688)	0.0721 (0.192)
OR4M2	12 (4%)	277	0.0577 (0.171)	0.0127 (0.075)	0.0401 (0.141)	0.0193 (0.0933)	0.00032 (0.00904)	0.247 (0.394)	0.0955 (0.228)	0.0232 (0.102)	0.155 (0.301)	0.0745 (0.196)
MAGI2	26 (9%)	263	0.459 (0.589)	0.466 (0.596)	0.0498 (0.157)	0.0219 (0.0995)	0.0175 (0.0886)	0.0089 (0.0625)	0.00959 (0.0648)	0.0528 (0.162)	0.243 (0.389)	0.251 (0.397)
GNG12	11 (4%)	278	0.0813 (0.207)	0.116 (0.254)	0.238 (0.384)	0.00627 (0.0512)	0.00613 (0.0505)	0.0673 (0.187)	0.00331 (0.0355)	0.00637 (0.0517)	0.585 (0.691)	0.118 (0.256)
WBP1	8 (3%)	281	0.457 (0.588)	0.125 (0.264)	0.322 (0.466)	0.00092 (0.0175)	0.00874 (0.0623)	0.131 (0.272)	0.00241 (0.0309)	0.0442 (0.148)	0.471 (0.599)	0.176 (0.32)
MUC6	34 (12%)	255	0.915 (0.953)	0.119 (0.258)	0.196 (0.342)	0.00305 (0.0339)	0.00365 (0.0375)	0.0187 (0.092)	0.00611 (0.0505)	0.0839 (0.21)	0.0963 (0.229)	0.459 (0.59)
DDC	9 (3%)	280	0.012 (0.073)	0.501 (0.622)	0.271 (0.417)	0.601 (0.704)	0.00373 (0.0379)	0.432 (0.566)	0.00119 (0.0199)	0.0213 (0.0988)	0.404 (0.544)	0.224 (0.372)
IWS1	12 (4%)	277	0.0465 (0.152)	0.062 (0.179)	0.138 (0.282)	0.00251 (0.0313)	0.0662 (0.185)	0.145 (0.29)	0.0189 (0.0923)	0.0231 (0.102)	0.887 (0.931)	0.648 (0.739)
SPTY2D1	15 (5%)	274	0.675 (0.761)	0.118 (0.257)	0.0217 (0.0993)	0.0223 (0.1)	0.0268 (0.111)	0.136 (0.28)	0.225 (0.373)	0.727 (0.801)	0.148 (0.293)	0.0301 (0.119)
GPSM3	12 (4%)	277	0.142 (0.288)	0.0394 (0.14)	0.161 (0.307)	0.0985 (0.232)	0.0448 (0.149)	0.012 (0.073)	0.061 (0.176)	0.0883 (0.217)	0.0466 (0.152)	0.229 (0.375)
FHDC1	15 (5%)	274	0.00321 (0.0348)	0.013 (0.0759)	0.191 (0.336)	0.146 (0.291)	0.0272 (0.112)	0.0803 (0.205)	0.0156 (0.0829)	0.151 (0.295)	0.0562 (0.169)	0.225 (0.373)
CTSC	10 (3%)	279	0.0177 (0.0892)	0.0213 (0.0988)	0.664 (0.75)	0.0696 (0.189)	0.0325 (0.126)	0.0984 (0.232)	0.0445 (0.148)	0.141 (0.286)	0.211 (0.36)	0.379 (0.52)
PRPF40B	14 (5%)	275	0.0358 (0.133)	0.0766 (0.199)	0.226 (0.374)	0.0154 (0.0828)	0.0431 (0.146)	0.104 (0.239)	0.0125 (0.0746)	0.709 (0.788)	0.284 (0.428)	0.366 (0.508)
TTF1	14 (5%)	275	0.623 (0.718)	0.0356 (0.133)	0.154 (0.298)	0.0182 (0.0909)	0.00978 (0.0654)	0.112 (0.249)	0.00333 (0.0357)	0.0728 (0.194)	0.131 (0.272)	0.486 (0.611)
FAM151A	9 (3%)	280	0.0407 (0.142)	0.0517 (0.16)	0.311 (0.456)	0.152 (0.296)	0.0283 (0.115)	0.00199 (0.0275)	0.0117 (0.0718)	0.472 (0.599)	0.46 (0.59)	0.163 (0.308)
STAT2	10 (3%)	279	0.024 (0.103)	0.0922 (0.222)	0.147 (0.292)	0.0163 (0.0847)	0.0235 (0.103)	0.089 (0.218)	0.0446 (0.148)	0.0569 (0.171)	0.469 (0.598)	0.917 (0.956)
EPHX1	9 (3%)	280	0.0562 (0.169)	0.0519 (0.161)	0.111 (0.247)	0.0553 (0.167)	0.00935 (0.0641)	0.0465 (0.152)	0.00111 (0.0194)	0.123 (0.262)	0.0484 (0.154)	0.0733 (0.195)
FERMT2	7 (2%)	282	0.25 (0.397)	0.0134 (0.0768)	0.0737 (0.196)	0.00035 (0.00958)	0.0645 (0.182)	0.104 (0.239)	0.382 (0.522)	0.0713 (0.192)	0.0227 (0.101)	0.0369 (0.135)
IFRD1	8 (3%)	281	0.111 (0.248)	0.0114 (0.0703)	0.0468 (0.153)	0.449 (0.579)	0.228 (0.375)	0.267 (0.412)	0.00273 (0.0323)	0.0445 (0.148)	0.402 (0.543)	0.322 (0.466)
PHACTR4	8 (3%)	281	0.8 (0.859)	0.00276 (0.0325)	0.548 (0.661)	0.0018 (0.0262)	0.0344 (0.13)	0.228 (0.375)	0.0367 (0.135)	0.164 (0.31)	0.626 (0.719)	0.583 (0.69)
ACVR1B	11 (4%)	278	0.0793 (0.203)	0.106 (0.241)	0.531 (0.647)	0.0193 (0.0935)	0.00014 (0.00552)	0.0773 (0.2)	0.0219 (0.0995)	0.0409 (0.142)	0.338 (0.482)	0.358 (0.499)
PIGB	10 (3%)	279	0.14 (0.285)	0.0472 (0.153)	0.154 (0.299)	0.0125 (0.0744)	0.0237 (0.103)	0.304 (0.449)	0.00989 (0.0657)	0.0587 (0.173)	0.567 (0.678)	0.603 (0.705)
DDX60	10 (3%)	279	0.0187 (0.092)	0.0752 (0.197)	0.0974 (0.23)	0.0442 (0.148)	0.0643 (0.182)	0.43 (0.565)	0.0445 (0.148)	0.0568 (0.17)	0.719 (0.795)	0.0478 (0.153)
RSF1	17 (6%)	272	0.353 (0.495)	0.0947 (0.226)	0.148 (0.293)	0.00915 (0.0634)	0.0226 (0.101)	0.0073 (0.0557)	0.0139 (0.0786)	0.22 (0.369)	0.215 (0.363)	0.0605 (0.175)
WASF3	11 (4%)	278	0.712 (0.79)	0.0003 (0.00879)	0.572 (0.682)	0.0041 (0.0401)	0.0271 (0.111)	0.0483 (0.154)	0.169 (0.315)	0.102 (0.238)	0.625 (0.719)	0.406 (0.545)
KIAA1009	15 (5%)	274	0.648 (0.739)	0.278 (0.423)	0.0729 (0.194)	0.00581 (0.0492)	0.00815 (0.0594)	0.022 (0.0995)	0.0691 (0.189)	0.291 (0.435)	0.132 (0.273)	0.0207 (0.0976)
ZNF124	9 (3%)	280	0.307 (0.452)	0.409 (0.548)	0.038 (0.136)	0.0552 (0.167)	0.00407 (0.04)	0.0151 (0.0819)	0.152 (0.295)	0.0212 (0.0986)	0.457 (0.588)	0.488 (0.612)
PIGO	10 (3%)	279	0.0192 (0.0932)	0.00042 (0.0106)	0.213 (0.362)	0.0159 (0.0836)	0.0192 (0.0932)	0.0897 (0.219)	0.606 (0.707)	0.0584 (0.172)	0.739 (0.811)	0.582 (0.689)
KIAA0406	12 (4%)	277	0.466 (0.596)	0.0189 (0.0923)	1 (1.00)	0.00168 (0.0249)	0.307 (0.452)	0.246 (0.393)	0.0953 (0.227)	0.0227 (0.101)	0.0228 (0.101)	0.112 (0.249)
SF3B2	17 (6%)	272	0.0109 (0.0686)	0.111 (0.247)	0.102 (0.237)	0.0233 (0.102)	0.00063 (0.0135)	0.135 (0.277)	0.0136 (0.0774)	0.0637 (0.181)	0.419 (0.557)	0.206 (0.354)
HIVEP3	27 (9%)	262	0.861 (0.909)	0.0185 (0.0918)	0.00714 (0.055)	0.0942 (0.226)	0.00778 (0.0574)	0.226 (0.374)	0.0019 (0.0268)	0.105 (0.24)	0.0831 (0.209)	0.17 (0.316)
EFHA1	9 (3%)	280	0.139 (0.283)	0.0628 (0.18)	0.0403 (0.142)	0.321 (0.466)	0.00267 (0.0322)	0.0478 (0.153)	0.0211 (0.0982)	0.123 (0.262)	0.141 (0.286)	0.215 (0.363)
SCLT1	14 (5%)	275	0.146 (0.291)	0.344 (0.488)	0.297 (0.442)	0.0285 (0.115)	0.0367 (0.135)	0.0113 (0.0703)	0.017 (0.0868)	0.179 (0.324)	0.457 (0.588)	0.489 (0.613)
CROT	11 (4%)	278	0.068 (0.188)	0.107 (0.243)	0.208 (0.357)	0.00692 (0.0542)	0.00321 (0.0348)	0.066 (0.185)	0.0377 (0.136)	0.0444 (0.148)	0.382 (0.522)	0.655 (0.745)
GLT8D1	8 (3%)	281	0.111 (0.248)	0.0478 (0.153)	0.346 (0.49)	0.0708 (0.191)	0.0322 (0.125)	0.372 (0.513)	0.00279 (0.0326)	0.0443 (0.148)	0.0733 (0.195)	0.488 (0.612)
KBTBD6	13 (4%)	276	0.00797 (0.0585)	0.279 (0.424)	0.0162 (0.0843)	0.0227 (0.101)	0.127 (0.267)	0.191 (0.336)	0.0448 (0.149)	0.411 (0.551)	0.467 (0.597)	0.712 (0.79)
MYEOV	8 (3%)	281	0.0784 (0.201)	0.00882 (0.0625)	0.549 (0.662)	0.00039 (0.0102)	0.0573 (0.171)	0.00118 (0.0199)	0.223 (0.372)	0.043 (0.146)	0.295 (0.44)	0.0985 (0.232)
ALDH2	9 (3%)	280	0.148 (0.294)	0.0624 (0.179)	0.0475 (0.153)	0.0127 (0.075)	0.0405 (0.142)	0.0478 (0.153)	0.0782 (0.201)	0.121 (0.26)	0.962 (0.997)	0.51 (0.631)
SEC24C	10 (3%)	279	0.127 (0.268)	0.04 (0.141)	0.227 (0.375)	0.107 (0.243)	0.0407 (0.142)	0.00087 (0.0169)	0.0112 (0.0696)	0.0584 (0.172)	0.242 (0.388)	0.0736 (0.195)
TACC2	30 (10%)	259	0.0293 (0.117)	0.229 (0.375)	0.0812 (0.207)	0.185 (0.331)	0.00387 (0.0388)	0.00296 (0.0336)	0.00759 (0.0565)	0.378 (0.52)	0.292 (0.437)	0.0743 (0.196)
EGR1	10 (3%)	279	0.0374 (0.136)	0.0637 (0.181)	0.295 (0.44)	0.0991 (0.233)	0.0233 (0.102)	0.0155 (0.0829)	0.00993 (0.0658)	0.629 (0.722)	0.839 (0.891)	0.307 (0.452)
TRUB1	9 (3%)	280	0.215 (0.363)	0.0304 (0.12)	0.0662 (0.185)	0.0133 (0.0766)	0.00498 (0.0448)	0.0417 (0.144)	0.258 (0.404)	0.137 (0.281)	0.221 (0.371)	0.258 (0.404)
SRCIN1	13 (4%)	276	0.147 (0.292)	0.392 (0.532)	0.0746 (0.197)	0.00587 (0.0494)	0.0186 (0.092)	0.00396 (0.0395)	0.0451 (0.149)	0.549 (0.662)	0.794 (0.855)	0.617 (0.714)
CA2	5 (2%)	284	0.3 (0.444)	0.146 (0.291)	0.0273 (0.112)	0.00749 (0.0563)	0.173 (0.319)	0.0142 (0.0798)	0.172 (0.318)	0.25 (0.397)	0.517 (0.635)	0.0365 (0.134)
WHSC1L1	16 (6%)	273	0.0798 (0.204)	0.00115 (0.0196)	0.161 (0.306)	0.00747 (0.0563)	0.00583 (0.0493)	0.142 (0.287)	0.0147 (0.0811)	0.0927 (0.223)	0.28 (0.425)	0.375 (0.516)
MTIF2	14 (5%)	275	0.0201 (0.0958)	0.00914 (0.0634)	0.161 (0.306)	0.055 (0.167)	0.0419 (0.144)	0.133 (0.275)	0.0111 (0.0695)	0.181 (0.326)	0.164 (0.31)	0.411 (0.551)
PKN2	10 (3%)	279	0.0644 (0.182)	0.0128 (0.0753)	1 (1.00)	0.0895 (0.218)	0.0477 (0.153)	0.0199 (0.095)	0.0437 (0.147)	0.159 (0.304)	0.652 (0.742)	0.426 (0.561)
NID2	18 (6%)	271	0.0004 (0.0103)	0.0997 (0.234)	0.461 (0.591)	0.0278 (0.113)	0.00059 (0.0132)	0.151 (0.295)	0.00202 (0.0278)	0.0845 (0.211)	0.601 (0.704)	0.27 (0.416)
PHKB	6 (2%)	283	0.0571 (0.171)	0.00364 (0.0374)	0.758 (0.828)	0.0137 (0.078)	0.521 (0.637)	0.0357 (0.133)	0.144 (0.29)	0.353 (0.495)	0.0295 (0.118)	0.334 (0.478)
KIAA1217	19 (7%)	270	0.163 (0.309)	0.00918 (0.0635)	0.0894 (0.218)	0.0107 (0.0684)	0.0375 (0.136)	0.00218 (0.0293)	0.0584 (0.172)	0.253 (0.399)	0.233 (0.377)	0.836 (0.89)
TIMM44	5 (2%)	284	0.149 (0.294)	0.0133 (0.0766)	0.386 (0.525)	0.0338 (0.128)	0.0332 (0.127)	0.0142 (0.0798)	0.257 (0.403)	0.253 (0.399)	0.659 (0.748)	0.202 (0.35)
ZFP36L2	8 (3%)	281	0.497 (0.618)	0.00773 (0.0571)	0.751 (0.823)	0.00299 (0.0336)	0.504 (0.626)	0.0901 (0.219)	0.224 (0.373)	0.166 (0.31)	0.0264 (0.11)	0.0214 (0.0989)
BRCA1	15 (5%)	274	0.646 (0.738)	0.00607 (0.0504)	0.0336 (0.128)	0.00716 (0.055)	0.0435 (0.147)	0.135 (0.277)	0.438 (0.57)	0.288 (0.432)	0.326 (0.471)	0.353 (0.495)
SEZ6	10 (3%)	279	0.0638 (0.182)	0.00232 (0.0302)	0.11 (0.247)	0.0129 (0.0756)	0.0763 (0.199)	0.0894 (0.218)	0.0457 (0.15)	0.143 (0.288)	0.745 (0.817)	0.0311 (0.122)
LRRC43	10 (3%)	279	0.0353 (0.132)	0.035 (0.131)	0.471 (0.599)	0.0512 (0.159)	0.00738 (0.056)	0.175 (0.32)	0.0104 (0.0673)	0.0754 (0.198)	0.222 (0.372)	0.514 (0.632)
FLG	62 (21%)	227	0.162 (0.308)	0.0692 (0.189)	0.0828 (0.208)	0.0141 (0.0795)	0.194 (0.34)	0.00049 (0.0116)	0.00041 (0.0105)	0.0556 (0.168)	0.207 (0.356)	0.00186 (0.0267)
TAF7L	8 (3%)	281	0.221 (0.371)	0.0151 (0.0819)	0.415 (0.555)	0.286 (0.43)	5e-05 (0.00334)	0.811 (0.868)	0.00251 (0.0313)	0.164 (0.31)	0.297 (0.441)	0.0471 (0.153)
LARP1	9 (3%)	280	0.309 (0.454)	0.0232 (0.102)	0.0237 (0.103)	0.205 (0.354)	0.219 (0.369)	0.143 (0.289)	0.00119 (0.0199)	0.137 (0.28)	0.617 (0.714)	0.0451 (0.149)
MCM4	12 (4%)	277	0.057 (0.171)	0.232 (0.377)	0.622 (0.717)	0.0125 (0.0746)	0.0793 (0.203)	0.00413 (0.0403)	0.00263 (0.032)	0.0226 (0.101)	0.619 (0.716)	0.223 (0.372)
NARG2	11 (4%)	278	0.0684 (0.188)	0.0756 (0.198)	0.129 (0.269)	0.00447 (0.0421)	0.0439 (0.147)	0.0422 (0.145)	0.165 (0.31)	0.0401 (0.141)	0.663 (0.75)	0.0645 (0.182)
KCNC1	7 (2%)	282	0.175 (0.32)	0.00839 (0.0608)	0.174 (0.32)	0.00979 (0.0654)	0.0101 (0.0661)	0.00457 (0.0425)	0.0661 (0.185)	0.229 (0.376)	0.544 (0.659)	0.21 (0.359)
NOS3	10 (3%)	279	0.575 (0.685)	0.123 (0.262)	0.0679 (0.187)	0.0134 (0.0768)	0.00389 (0.0389)	0.0231 (0.102)	0.0173 (0.0878)	0.343 (0.487)	0.518 (0.635)	0.732 (0.805)
USP8	7 (2%)	282	0.493 (0.615)	0.0968 (0.229)	0.549 (0.662)	0.00976 (0.0653)	0.0397 (0.141)	0.00142 (0.0222)	0.00759 (0.0565)	0.0706 (0.19)	0.333 (0.477)	0.475 (0.601)
SCN9A	28 (10%)	261	0.795 (0.855)	0.0116 (0.0713)	0.182 (0.328)	0.0418 (0.144)	0.00562 (0.0483)	0.0121 (0.073)	0.0967 (0.229)	0.111 (0.248)	0.211 (0.36)	0.26 (0.405)
SMAD2	9 (3%)	280	0.25 (0.397)	0.0211 (0.0982)	0.239 (0.385)	0.174 (0.32)	0.0106 (0.0678)	0.0192 (0.0933)	0.151 (0.295)	0.0217 (0.0993)	0.518 (0.635)	0.264 (0.409)
CNKSR1	7 (2%)	282	0.249 (0.396)	0.021 (0.0982)	0.242 (0.388)	0.0225 (0.101)	0.059 (0.173)	0.00135 (0.0212)	0.00753 (0.0564)	0.0707 (0.191)	0.22 (0.37)	0.225 (0.373)
PPARGC1B	7 (2%)	282	0.248 (0.395)	0.00367 (0.0376)	0.0864 (0.213)	0.014 (0.0792)	0.0545 (0.166)	0.156 (0.302)	0.795 (0.855)	0.0689 (0.189)	0.00258 (0.0318)	0.0167 (0.0861)
GANAB	11 (4%)	278	0.0248 (0.105)	0.00572 (0.0487)	0.42 (0.558)	0.0034 (0.0358)	0.0116 (0.0711)	0.192 (0.338)	0.165 (0.31)	0.104 (0.239)	0.653 (0.743)	0.57 (0.681)
PIAS3	5 (2%)	284	0.0179 (0.0901)	0.018 (0.0903)	0.149 (0.294)	0.693 (0.776)	0.0241 (0.103)	0.436 (0.568)	0.031 (0.122)	0.248 (0.395)
LSS	9 (3%)	280	0.0579 (0.172)	0.00587 (0.0494)	0.216 (0.365)	0.00119 (0.0199)	0.0234 (0.102)	0.015 (0.0817)	0.0775 (0.2)	0.12 (0.259)	0.443 (0.574)	0.62 (0.716)
FGF13	10 (3%)	279	0.0195 (0.0938)	0.0125 (0.0744)	0.667 (0.754)	0.518 (0.635)	0.00599 (0.0501)	1 (1.00)	0.0829 (0.208)	0.0579 (0.172)	0.164 (0.31)	0.0385 (0.138)
ELK3	6 (2%)	283	0.457 (0.588)	0.188 (0.333)	0.439 (0.571)	0.00943 (0.0643)	0.00985 (0.0656)	0.00458 (0.0425)	0.0157 (0.083)	0.12 (0.259)	0.619 (0.716)	0.0752 (0.198)
NEK8	11 (4%)	278	0.0702 (0.19)	0.738 (0.811)	0.0528 (0.162)	0.0406 (0.142)	0.00914 (0.0634)	0.0754 (0.198)	0.00852 (0.0614)	0.0457 (0.15)	0.28 (0.425)	0.559 (0.671)
ARHGAP29	9 (3%)	280	0.165 (0.31)	0.0194 (0.0938)	0.0965 (0.229)	0.00183 (0.0265)	0.112 (0.249)	0.00685 (0.0539)	0.0331 (0.127)	0.135 (0.278)	0.55 (0.663)	0.18 (0.325)
PLEKHH3	9 (3%)	280	0.0562 (0.169)	0.49 (0.613)	0.0373 (0.136)	0.211 (0.36)	0.00848 (0.0612)	0.13 (0.271)	0.00132 (0.0211)	0.472 (0.599)	0.156 (0.301)	0.0238 (0.103)
GIGYF2	11 (4%)	278	0.0787 (0.202)	0.0844 (0.211)	0.0489 (0.155)	0.288 (0.432)	0.00124 (0.0204)	0.174 (0.32)	0.00506 (0.0452)	0.041 (0.142)	0.189 (0.334)	0.101 (0.235)
PIK3R1	10 (3%)	279	0.767 (0.835)	0.236 (0.382)	0.0422 (0.145)	0.004 (0.0396)	0.0367 (0.135)	0.143 (0.288)	0.00723 (0.0554)	0.211 (0.359)	0.0577 (0.171)	0.374 (0.516)
RDBP	8 (3%)	281	0.0483 (0.154)	0.00982 (0.0656)	0.177 (0.321)	0.182 (0.329)	0.00268 (0.0323)	0.13 (0.271)	0.661 (0.748)	0.165 (0.31)	0.411 (0.551)	0.0411 (0.143)
CNTROB	7 (2%)	282	0.25 (0.397)	0.021 (0.0982)	0.0845 (0.211)	0.022 (0.0995)	0.00949 (0.0645)	0.129 (0.269)	0.00732 (0.0558)	0.0694 (0.189)	0.547 (0.661)	0.331 (0.476)
ZNF334	12 (4%)	277	0.257 (0.402)	0.242 (0.388)	0.278 (0.423)	0.00014 (0.00552)	0.0326 (0.126)	0.0115 (0.0708)	0.00607 (0.0504)	0.176 (0.32)	0.309 (0.455)	0.176 (0.321)
LENG1	8 (3%)	281	0.243 (0.389)	0.0144 (0.0802)	0.188 (0.333)	0.00574 (0.0488)	0.0166 (0.0858)	0.0153 (0.0824)	0.281 (0.425)	0.305 (0.45)	0.981 (1.00)	0.565 (0.676)
CSNK1G1	6 (2%)	283	0.513 (0.632)	0.0371 (0.135)	0.581 (0.689)	0.225 (0.373)	0.0354 (0.132)	0.105 (0.24)	0.0163 (0.0848)	0.484 (0.609)	0.127 (0.267)	0.0245 (0.104)
C11ORF63	15 (5%)	274	0.574 (0.684)	0.0644 (0.182)	0.859 (0.908)	0.0435 (0.147)	0.29 (0.434)	0.27 (0.415)	0.0219 (0.0995)	0.152 (0.295)	0.0434 (0.147)	0.0313 (0.122)
TMEM39A	8 (3%)	281	0.342 (0.487)	0.0432 (0.146)	0.952 (0.987)	0.00996 (0.0658)	0.0484 (0.154)	0.0775 (0.2)	0.0356 (0.132)	0.165 (0.31)	0.633 (0.725)	0.118 (0.256)
USP13	11 (4%)	278	0.277 (0.423)	0.0466 (0.152)	0.139 (0.284)	0.236 (0.382)	0.044 (0.147)	0.0425 (0.146)	0.122 (0.26)	0.2 (0.347)	0.118 (0.257)	0.0101 (0.0663)
SETD2	15 (5%)	274	0.0477 (0.153)	0.061 (0.176)	0.104 (0.239)	0.00437 (0.0416)	0.175 (0.32)	0.209 (0.358)	0.00014 (0.00552)	0.00441 (0.0419)	0.771 (0.839)	0.428 (0.563)
RGS12	23 (8%)	266	0.187 (0.333)	0.125 (0.264)	0.161 (0.307)	1e-05 (0.00118)	0.0261 (0.109)	0.00506 (0.0452)	0.0135 (0.0774)	0.177 (0.322)	0.547 (0.661)	0.464 (0.595)
ZNF711	13 (4%)	276	0.204 (0.352)	0.0344 (0.13)	0.328 (0.472)	0.0205 (0.0968)	0.727 (0.801)	0.174 (0.319)	0.0349 (0.131)	0.0124 (0.0744)	0.122 (0.26)	0.367 (0.509)
PHKG2	12 (4%)	277	0.0154 (0.0828)	0.00064 (0.0136)	0.214 (0.363)	0.00454 (0.0424)	0.165 (0.31)	0.00508 (0.0452)	0.0939 (0.225)	0.0611 (0.177)	1 (1.00)	0.126 (0.267)
TH1L	11 (4%)	278	0.0707 (0.191)	0.155 (0.3)	0.561 (0.673)	0.0381 (0.137)	9e-05 (0.00458)	0.26 (0.405)	0.00906 (0.0631)	0.0396 (0.14)	0.471 (0.599)	0.0738 (0.196)
PLEKHA6	20 (7%)	269	0.00968 (0.0652)	0.0323 (0.125)	0.665 (0.751)	0.127 (0.267)	0.0718 (0.192)	0.419 (0.557)	0.00245 (0.031)	0.0514 (0.159)	0.152 (0.296)	0.0861 (0.213)
IRF2	15 (5%)	274	0.365 (0.507)	0.495 (0.617)	0.606 (0.707)	0.0293 (0.117)	0.333 (0.477)	0.742 (0.815)	0.00992 (0.0657)	0.0415 (0.144)	0.256 (0.402)	0.0686 (0.188)
ADAM28	14 (5%)	275	0.227 (0.374)	0.00692 (0.0542)	0.502 (0.624)	0.128 (0.269)	0.59 (0.696)	0.00422 (0.0407)	0.0166 (0.0855)	0.0785 (0.202)	0.127 (0.267)	0.257 (0.403)
ARHGAP5	17 (6%)	272	0.00593 (0.0497)	0.0165 (0.0854)	0.89 (0.932)	0.382 (0.523)	0.00534 (0.0467)	0.151 (0.295)	0.103 (0.238)	0.217 (0.366)	0.073 (0.194)	0.312 (0.457)
SLC10A6	8 (3%)	281	0.181 (0.327)	0.0506 (0.158)	0.346 (0.489)	0.0501 (0.157)	0.00891 (0.0625)	0.0756 (0.198)	0.0234 (0.102)	0.0434 (0.147)	0.192 (0.337)	0.178 (0.323)
KIF13A	20 (7%)	269	0.293 (0.438)	0.0606 (0.176)	0.17 (0.317)	0.00239 (0.0307)	0.00032 (0.00904)	0.108 (0.245)	0.00223 (0.0297)	0.0689 (0.189)	0.652 (0.742)	0.46 (0.59)
TNFRSF9	10 (3%)	279	0.0406 (0.142)	0.293 (0.438)	0.277 (0.423)	0.286 (0.431)	0.0178 (0.0895)	0.0987 (0.232)	0.514 (0.632)	0.14 (0.284)	0.58 (0.688)	0.0203 (0.0966)
ZNF48	10 (3%)	279	0.236 (0.382)	0.0133 (0.0766)	0.181 (0.327)	0.096 (0.228)	0.00063 (0.0135)	0.0147 (0.081)	0.082 (0.207)	0.14 (0.284)	0.703 (0.784)	0.624 (0.719)
SERPINI1	8 (3%)	281	0.223 (0.372)	0.0603 (0.175)	0.344 (0.488)	0.001 (0.0182)	0.0131 (0.076)	0.13 (0.27)	0.0246 (0.105)	0.213 (0.362)	0.328 (0.472)	0.12 (0.258)
RGL2	12 (4%)	277	0.104 (0.239)	0.0862 (0.213)	0.147 (0.292)	0.00659 (0.0527)	0.00605 (0.0504)	0.0223 (0.1)	0.0948 (0.226)	0.172 (0.318)	0.242 (0.388)	0.843 (0.894)
CABP5	5 (2%)	284	0.404 (0.544)	0.098 (0.231)	0.304 (0.449)	0.00089 (0.0171)	0.0233 (0.102)	0.0497 (0.157)	0.314 (0.458)	0.513 (0.632)	1 (1.00)	0.879 (0.924)
ATP6V1C2	12 (4%)	277	0.0569 (0.171)	0.0298 (0.119)	0.141 (0.286)	0.185 (0.331)	0.0127 (0.075)	0.406 (0.546)	0.00233 (0.0303)	0.0597 (0.174)	0.0921 (0.222)	0.647 (0.739)
ZKSCAN5	9 (3%)	280	0.0309 (0.121)	0.571 (0.682)	0.05 (0.157)	0.211 (0.36)	0.0278 (0.113)	0.562 (0.674)	0.0786 (0.202)	0.136 (0.279)	0.129 (0.269)	0.191 (0.336)
ALDH3A1	10 (3%)	279	0.12 (0.258)	0.0511 (0.159)	0.0493 (0.156)	0.0222 (0.1)	0.0666 (0.186)	0.144 (0.29)	0.0102 (0.0665)	0.346 (0.49)	0.0622 (0.179)	0.111 (0.248)
C13ORF33	7 (2%)	282	0.189 (0.334)	0.0145 (0.0808)	0.437 (0.569)	0.0715 (0.192)	0.0468 (0.153)	0.0149 (0.0814)	0.794 (0.855)	0.233 (0.378)	0.0806 (0.205)	0.377 (0.518)
OTX2	9 (3%)	280	0.209 (0.358)	0.0512 (0.159)	0.76 (0.83)	0.0103 (0.0671)	0.0922 (0.222)	0.263 (0.408)	0.00128 (0.0208)	0.121 (0.26)	0.029 (0.116)	0.0736 (0.196)
DYRK4	9 (3%)	280	0.0962 (0.229)	0.00871 (0.0623)	0.789 (0.853)	0.0881 (0.216)	0.0959 (0.228)	0.0113 (0.0702)	0.353 (0.495)	0.472 (0.599)	0.0269 (0.111)	0.086 (0.213)
FBXO21	12 (4%)	277	0.0259 (0.108)	0.159 (0.304)	0.689 (0.773)	0.0112 (0.0696)	0.0137 (0.0778)	0.191 (0.337)	0.069 (0.189)	0.382 (0.522)	0.349 (0.492)	0.611 (0.709)
AXIN2	15 (5%)	274	0.113 (0.249)	0.00556 (0.0482)	0.767 (0.836)	0.0881 (0.216)	0.00444 (0.042)	0.012 (0.0727)	0.0693 (0.189)	0.131 (0.272)	0.0874 (0.215)	0.335 (0.479)
BEND3	12 (4%)	277	0.404 (0.544)	0.135 (0.278)	0.121 (0.26)	0.485 (0.61)	0.00563 (0.0483)	0.175 (0.32)	0.0184 (0.0915)	0.0605 (0.175)	0.347 (0.49)	0.0286 (0.116)
ABCA6	13 (4%)	276	0.0242 (0.104)	0.00102 (0.0184)	0.32 (0.465)	0.126 (0.267)	0.137 (0.28)	0.0237 (0.103)	0.138 (0.282)	0.278 (0.423)	0.774 (0.841)	0.542 (0.657)
FOXN3	8 (3%)	281	0.111 (0.248)	0.00121 (0.02)	0.237 (0.383)	0.0107 (0.0681)	0.0161 (0.0841)	0.294 (0.438)	0.224 (0.372)	0.217 (0.366)	0.322 (0.466)	0.365 (0.507)
HNF1B	6 (2%)	283	0.22 (0.37)	0.011 (0.0693)	0.426 (0.561)	0.00301 (0.0337)	0.0346 (0.13)	0.537 (0.652)	0.0965 (0.229)	0.12 (0.259)	0.421 (0.558)	0.649 (0.74)
ZDHHC7	6 (2%)	283	0.177 (0.321)	0.0131 (0.0759)	0.68 (0.766)	0.254 (0.4)	0.0139 (0.0786)	0.00445 (0.042)	0.146 (0.291)	0.119 (0.258)	0.179 (0.324)	0.647 (0.738)
CSF3R	12 (4%)	277	0.0573 (0.171)	0.00097 (0.018)	0.175 (0.32)	0.485 (0.61)	0.143 (0.288)	0.00438 (0.0417)	0.0189 (0.0923)	0.173 (0.318)	0.579 (0.687)	0.562 (0.673)
MASTL	11 (4%)	278	0.0849 (0.211)	0.0489 (0.155)	0.419 (0.557)	0.486 (0.611)	0.0172 (0.0878)	0.261 (0.407)	0.0216 (0.0993)	0.279 (0.424)	0.186 (0.332)	0.0757 (0.198)
FZD3	10 (3%)	279	0.128 (0.269)	0.0355 (0.132)	0.378 (0.519)	0.037 (0.135)	0.509 (0.629)	1 (1.00)	0.0102 (0.0669)	0.0565 (0.17)	0.539 (0.654)	0.256 (0.401)
GPR141	9 (3%)	280	0.152 (0.296)	0.0634 (0.181)	0.708 (0.788)	0.00085 (0.0166)	0.0466 (0.152)	0.812 (0.869)	0.0217 (0.0995)	0.121 (0.259)	0.596 (0.701)	0.473 (0.6)
VPRBP	9 (3%)	280	0.0309 (0.121)	0.474 (0.6)	0.169 (0.315)	0.0333 (0.128)	0.00521 (0.0458)	0.277 (0.423)	0.152 (0.296)	0.471 (0.599)	1 (1.00)	0.168 (0.314)
USP15	6 (2%)	283	0.177 (0.322)	0.118 (0.257)	0.00508 (0.0452)	0.0722 (0.193)	0.0105 (0.0675)	0.655 (0.745)	0.0154 (0.0828)	0.351 (0.494)	0.438 (0.57)	0.0806 (0.205)
ASPN	5 (2%)	284	0.297 (0.442)	0.0962 (0.229)	0.481 (0.606)	0.0756 (0.198)	0.173 (0.318)	0.0147 (0.0811)	0.031 (0.122)	0.719 (0.795)	0.234 (0.379)	0.0487 (0.155)
OR7C1	6 (2%)	283	0.298 (0.443)	0.0589 (0.173)	0.425 (0.561)	0.0431 (0.146)	0.0339 (0.129)	0.0141 (0.0793)	0.145 (0.29)	0.357 (0.498)	0.521 (0.637)	0.156 (0.301)
FAM193A	15 (5%)	274	0.0402 (0.142)	0.173 (0.319)	0.267 (0.413)	0.21 (0.359)	0.0507 (0.158)	0.022 (0.0995)	0.0129 (0.0755)	0.0839 (0.21)	0.315 (0.46)	0.421 (0.558)
CPB2	9 (3%)	280	0.0571 (0.171)	0.0171 (0.0872)	0.336 (0.479)	0.00079 (0.0158)	0.0346 (0.13)	0.157 (0.302)	0.468 (0.598)	0.122 (0.261)	0.583 (0.69)	0.288 (0.432)
GPR82	9 (3%)	280	0.729 (0.803)	0.0194 (0.0938)	0.283 (0.427)	0.00452 (0.0423)	0.23 (0.376)	0.00113 (0.0195)	0.153 (0.297)	0.474 (0.6)	0.522 (0.638)	0.425 (0.56)
KLC2	11 (4%)	278	0.405 (0.545)	0.671 (0.758)	0.216 (0.364)	0.174 (0.32)	0.0692 (0.189)	0.00126 (0.0206)	0.00504 (0.0452)	0.0405 (0.142)	0.173 (0.318)	0.188 (0.334)
OR5M3	15 (5%)	274	0.491 (0.614)	0.129 (0.269)	0.316 (0.461)	0.0451 (0.149)	0.0147 (0.081)	0.0395 (0.14)	0.223 (0.372)	0.288 (0.432)	0.0799 (0.204)	0.211 (0.359)
MMP3	8 (3%)	281	0.193 (0.34)	0.247 (0.394)	0.343 (0.487)	0.00611 (0.0505)	0.00075 (0.0152)	0.267 (0.412)	0.0237 (0.103)	0.168 (0.313)	0.183 (0.329)	0.287 (0.431)
SOS2	19 (7%)	270	0.0161 (0.0841)	0.0552 (0.167)	0.719 (0.795)	0.11 (0.246)	0.00487 (0.0443)	0.00083 (0.0164)	0.83 (0.884)	0.223 (0.372)	0.132 (0.274)	0.159 (0.304)
OR4K5	12 (4%)	277	0.735 (0.808)	0.37 (0.512)	0.109 (0.246)	0.00333 (0.0357)	0.125 (0.265)	0.0228 (0.101)	0.0178 (0.0897)	0.089 (0.218)	0.89 (0.932)	0.187 (0.333)
PFKP	12 (4%)	277	0.258 (0.403)	0.136 (0.279)	0.0871 (0.214)	0.00689 (0.054)	0.243 (0.389)	0.484 (0.609)	0.0953 (0.227)	0.0282 (0.115)	0.0785 (0.202)	0.022 (0.0995)
CDH16	12 (4%)	277	0.0231 (0.102)	0.149 (0.294)	0.455 (0.586)	0.119 (0.257)	0.0516 (0.16)	0.0229 (0.102)	0.0184 (0.0916)	0.415 (0.554)	0.519 (0.636)	0.248 (0.395)
SH3KBP1	13 (4%)	276	0.0655 (0.184)	0.24 (0.387)	0.299 (0.443)	0.0434 (0.147)	0.0176 (0.0888)	0.145 (0.29)	0.00888 (0.0625)	0.114 (0.25)	0.399 (0.539)	0.597 (0.702)
TMEM63A	11 (4%)	278	0.0699 (0.19)	0.0369 (0.135)	0.337 (0.481)	0.184 (0.33)	0.0446 (0.148)	0.278 (0.423)	0.168 (0.314)	0.102 (0.238)	0.295 (0.439)	0.0478 (0.153)
SUCLG2	5 (2%)	284	0.296 (0.441)	0.281 (0.425)	0.583 (0.69)	0.00877 (0.0624)	0.0182 (0.091)	0.434 (0.567)	0.0305 (0.121)	0.515 (0.633)	0.44 (0.571)	0.248 (0.395)
TLR4	21 (7%)	268	0.721 (0.795)	0.0477 (0.153)	0.249 (0.396)	0.0325 (0.126)	0.164 (0.31)	0.824 (0.879)	0.102 (0.237)	0.0397 (0.141)	0.401 (0.542)	0.983 (1.00)
KBTBD10	5 (2%)	284	0.0195 (0.0938)	0.0367 (0.135)	0.0868 (0.214)	0.593 (0.698)	0.155 (0.3)	0.0152 (0.082)	0.169 (0.315)	0.252 (0.399)	0.826 (0.88)	0.607 (0.707)
JHDM1D	10 (3%)	279	0.156 (0.301)	0.00758 (0.0565)	0.216 (0.365)	0.266 (0.411)	0.373 (0.515)	0.0254 (0.107)	0.0171 (0.0874)	0.211 (0.359)	0.281 (0.425)	0.511 (0.631)
C7ORF49	7 (2%)	282	0.172 (0.318)	0.00884 (0.0625)	0.0853 (0.212)	0.112 (0.248)	0.275 (0.421)	0.0153 (0.0824)	0.382 (0.523)	0.355 (0.497)	0.0366 (0.134)	0.122 (0.261)
THEMIS	8 (3%)	281	0.0573 (0.171)	0.109 (0.245)	0.86 (0.909)	0.00269 (0.0323)	0.0327 (0.126)	0.54 (0.654)	0.0361 (0.133)	0.307 (0.451)	0.282 (0.426)	0.488 (0.612)
KCNH2	13 (4%)	276	0.103 (0.238)	0.498 (0.619)	0.0422 (0.145)	0.0323 (0.125)	0.0102 (0.0669)	0.0702 (0.19)	0.0823 (0.208)	0.113 (0.249)	0.125 (0.265)	0.141 (0.286)
PTPN4	9 (3%)	280	0.125 (0.265)	0.0582 (0.172)	0.417 (0.556)	0.0702 (0.19)	0.102 (0.238)	0.159 (0.304)	0.0216 (0.0992)	0.0209 (0.0981)	0.0429 (0.146)	0.141 (0.286)
STK38	6 (2%)	283	0.408 (0.548)	0.108 (0.245)	0.091 (0.22)	0.00119 (0.0199)	0.0275 (0.113)	0.103 (0.239)	0.0156 (0.083)	0.119 (0.258)	0.717 (0.794)	0.49 (0.613)
TERF2	12 (4%)	277	0.0175 (0.0888)	0.146 (0.291)	0.801 (0.86)	0.00699 (0.0545)	0.0431 (0.146)	0.564 (0.675)	0.243 (0.389)	0.38 (0.521)	0.677 (0.763)	0.545 (0.659)
ERBB4	39 (13%)	250	0.436 (0.568)	0.0392 (0.14)	0.854 (0.904)	0.0108 (0.0686)	0.047 (0.153)	0.241 (0.387)	0.169 (0.315)	0.367 (0.509)	0.696 (0.778)	0.837 (0.89)
AGBL5	12 (4%)	277	0.561 (0.673)	0.0666 (0.186)	0.926 (0.963)	0.0291 (0.117)	0.0475 (0.153)	0.089 (0.218)	0.0385 (0.138)	0.0976 (0.23)	0.683 (0.768)	0.221 (0.37)
GFOD1	13 (4%)	276	0.244 (0.391)	0.614 (0.711)	0.0267 (0.11)	0.00473 (0.0432)	0.18 (0.326)	0.206 (0.355)	0.0341 (0.129)	0.116 (0.255)	0.46 (0.591)	0.0768 (0.199)
PHF20	11 (4%)	278	0.863 (0.911)	0.747 (0.819)	0.617 (0.714)	0.0477 (0.153)	0.0384 (0.138)	0.174 (0.32)	0.121 (0.259)	0.126 (0.266)	0.43 (0.564)	0.0476 (0.153)
MLH1	6 (2%)	283	0.299 (0.444)	0.493 (0.615)	0.00706 (0.055)	0.00044 (0.0108)	0.157 (0.302)	0.655 (0.745)	0.0163 (0.0848)	0.353 (0.495)	0.44 (0.571)	0.31 (0.455)
ITSN2	16 (6%)	273	0.275 (0.421)	0.00521 (0.0458)	0.39 (0.53)	0.417 (0.556)	0.0708 (0.191)	0.164 (0.31)	0.00063 (0.0135)	0.00222 (0.0296)	0.084 (0.21)	0.0889 (0.218)
MZF1	10 (3%)	279	0.0409 (0.142)	0.297 (0.442)	0.0315 (0.123)	0.516 (0.634)	0.762 (0.831)	0.423 (0.559)	0.188 (0.333)	0.691 (0.774)	0.048 (0.154)	0.31 (0.455)
FANCE	7 (2%)	282	0.174 (0.32)	0.349 (0.492)	0.0838 (0.21)	0.014 (0.0792)	0.0335 (0.128)	0.228 (0.375)	0.00741 (0.0561)	0.229 (0.375)	0.718 (0.795)	0.319 (0.464)
EXOSC8	5 (2%)	284	0.514 (0.632)	0.227 (0.375)	0.681 (0.766)	0.0344 (0.13)	0.0337 (0.128)	0.229 (0.375)	0.0309 (0.121)	0.251 (0.397)	0.0999 (0.234)	0.057 (0.171)
KANK4	10 (3%)	279	0.139 (0.283)	0.0471 (0.153)	0.257 (0.402)	0.0129 (0.0756)	0.124 (0.263)	0.00036 (0.00975)	0.0822 (0.208)	0.0764 (0.199)	0.79 (0.853)	0.695 (0.777)
ATRIP	5 (2%)	284	0.511 (0.631)	0.0369 (0.135)	0.603 (0.705)	0.00013 (0.00542)	0.0513 (0.159)	0.0146 (0.0809)	0.172 (0.318)	0.253 (0.399)	0.0862 (0.213)	0.117 (0.256)
IDE	9 (3%)	280	0.116 (0.254)	0.509 (0.63)	0.102 (0.237)	0.00741 (0.0561)	0.0253 (0.107)	0.00156 (0.0235)	0.154 (0.299)	0.474 (0.6)	0.223 (0.372)	0.713 (0.79)
KIAA1539	6 (2%)	283	0.221 (0.371)	0.0213 (0.0988)	0.605 (0.706)	0.0097 (0.0652)	0.00676 (0.0536)	0.227 (0.375)	0.578 (0.686)	0.119 (0.258)	0.443 (0.574)	0.212 (0.36)
RNMT	8 (3%)	281	0.113 (0.25)	0.223 (0.372)	0.264 (0.409)	0.02 (0.0953)	0.0175 (0.0887)	0.373 (0.514)	0.00264 (0.032)	0.165 (0.31)	0.472 (0.599)	0.0738 (0.196)
SLC12A1	21 (7%)	268	0.313 (0.458)	0.00888 (0.0625)	0.903 (0.943)	0.0496 (0.156)	0.0379 (0.136)	0.151 (0.295)	0.245 (0.391)	0.62 (0.716)	0.164 (0.31)	0.526 (0.642)
SPATA5L1	7 (2%)	282	0.574 (0.684)	0.00031 (0.00895)	0.442 (0.573)	0.01 (0.066)	0.00637 (0.0517)	0.539 (0.654)	0.797 (0.857)	0.404 (0.545)	0.98 (1.00)	0.172 (0.318)
ACTG2	9 (3%)	280	0.212 (0.361)	0.625 (0.719)	0.0376 (0.136)	0.055 (0.167)	0.403 (0.543)	0.0468 (0.153)	0.0112 (0.0698)	0.255 (0.401)	0.439 (0.571)	0.571 (0.682)
GIMAP7	5 (2%)	284	0.334 (0.478)	0.0132 (0.0761)	0.0815 (0.207)	0.0075 (0.0563)	0.147 (0.293)	0.0149 (0.0814)	0.171 (0.318)	0.252 (0.399)	0.457 (0.588)	0.17 (0.316)
CLCNKB	13 (4%)	276	0.258 (0.404)	0.005 (0.045)	0.0835 (0.209)	0.0616 (0.178)	0.00202 (0.0278)	0.0151 (0.0819)	0.127 (0.268)	0.232 (0.377)	0.0667 (0.186)	0.468 (0.598)
ACSS2	9 (3%)	280	0.0677 (0.187)	0.508 (0.629)	0.00324 (0.0349)	0.00156 (0.0235)	0.337 (0.481)	0.0187 (0.092)	0.631 (0.723)	0.177 (0.322)	0.649 (0.74)	0.663 (0.75)
PPM1H	8 (3%)	281	0.224 (0.373)	0.418 (0.557)	0.16 (0.305)	1e-05 (0.00118)	0.0671 (0.186)	0.131 (0.272)	0.023 (0.102)	0.0449 (0.149)	0.164 (0.31)	0.199 (0.346)
COL20A1	18 (6%)	271	0.19 (0.335)	0.0124 (0.0744)	0.121 (0.26)	0.0131 (0.0759)	0.0401 (0.141)	0.123 (0.262)	0.302 (0.447)	0.415 (0.554)	0.634 (0.725)	0.964 (0.998)
GCDH	8 (3%)	281	0.195 (0.341)	0.304 (0.449)	0.163 (0.309)	0.0127 (0.0751)	0.0136 (0.0774)	0.105 (0.24)	0.00262 (0.0319)	0.706 (0.786)	0.86 (0.909)	0.31 (0.455)
TSPYL5	9 (3%)	280	0.208 (0.357)	0.0628 (0.18)	0.351 (0.493)	0.596 (0.701)	0.114 (0.252)	0.145 (0.29)	0.0214 (0.0989)	0.0212 (0.0985)	0.00911 (0.0633)	0.0867 (0.214)
LUC7L3	6 (2%)	283	0.665 (0.751)	0.0616 (0.178)	0.00638 (0.0517)	0.0147 (0.081)	0.205 (0.354)	0.0341 (0.129)	0.578 (0.687)	0.486 (0.611)	0.0607 (0.176)	0.0976 (0.23)
NUAK1	16 (6%)	273	0.499 (0.62)	0.0262 (0.109)	0.0199 (0.0949)	0.00273 (0.0323)	0.12 (0.259)	0.161 (0.307)	0.289 (0.433)	0.162 (0.307)	0.972 (1.00)	0.322 (0.466)
IGHMBP2	12 (4%)	277	0.0976 (0.23)	0.0402 (0.142)	0.279 (0.424)	0.00568 (0.0485)	0.108 (0.245)	0.143 (0.289)	0.0106 (0.0679)	0.0601 (0.175)	0.283 (0.426)	0.491 (0.614)
RFX5	10 (3%)	279	0.12 (0.258)	0.0061 (0.0505)	0.345 (0.489)	0.446 (0.577)	0.412 (0.551)	0.0259 (0.108)	0.0182 (0.0911)	0.0756 (0.198)	0.255 (0.401)	0.101 (0.235)
AKR7A2	8 (3%)	281	0.788 (0.852)	0.0038 (0.0382)	0.0613 (0.177)	0.00417 (0.0404)	0.268 (0.413)	0.0902 (0.219)	0.0369 (0.135)	0.705 (0.786)	0.821 (0.876)	0.776 (0.843)
CALCRL	8 (3%)	281	0.0161 (0.0841)	0.419 (0.557)	0.0373 (0.136)	0.00712 (0.055)	0.274 (0.42)	0.885 (0.929)	0.151 (0.295)	0.31 (0.456)	0.948 (0.983)	0.949 (0.984)
USP28	13 (4%)	276	0.226 (0.374)	0.0512 (0.159)	0.295 (0.44)	0.0164 (0.0848)	0.0487 (0.155)	0.314 (0.459)	0.139 (0.283)	0.0414 (0.144)	0.499 (0.62)	0.269 (0.415)
SLA	4 (1%)	285	0.472 (0.599)	0.0362 (0.134)			0.0239 (0.103)	0.0491 (0.155)	0.368 (0.51)	0.417 (0.556)	0.222 (0.371)	0.709 (0.788)
PDS5B	14 (5%)	275	0.0561 (0.169)	0.00559 (0.0483)	0.771 (0.839)	1e-05 (0.00118)	0.152 (0.296)	0.134 (0.276)	0.0253 (0.107)	0.0526 (0.162)	0.579 (0.687)	0.383 (0.523)
THBS1	15 (5%)	274	0.102 (0.238)	0.0257 (0.108)	0.871 (0.918)	0.275 (0.421)	0.0715 (0.192)	0.0244 (0.104)	0.0215 (0.0992)	0.151 (0.295)	0.197 (0.344)	0.246 (0.392)
CCDC30	7 (2%)	282	0.199 (0.346)	0.0509 (0.158)	0.603 (0.705)	0.0754 (0.198)	0.00023 (0.00749)	0.00148 (0.0227)	0.00763 (0.0567)	0.0689 (0.189)	0.549 (0.662)	0.301 (0.446)
CLCA4	11 (4%)	278	0.0645 (0.182)	0.072 (0.192)	0.469 (0.598)	0.00399 (0.0396)	0.00044 (0.0108)	0.482 (0.608)	0.0365 (0.134)	0.284 (0.428)	0.348 (0.491)	0.0816 (0.207)
TRPV2	10 (3%)	279	0.126 (0.267)	0.38 (0.521)	0.0671 (0.186)	0.0003 (0.00879)	0.0288 (0.116)	0.143 (0.288)	0.0454 (0.15)	0.0579 (0.172)	0.416 (0.556)	0.514 (0.632)
PCCA	8 (3%)	281	0.247 (0.394)	0.0517 (0.16)	0.0716 (0.192)	0.214 (0.363)	0.0646 (0.183)	0.103 (0.239)	0.00288 (0.0331)	0.0438 (0.147)	0.242 (0.388)	0.026 (0.109)
FOXJ1	5 (2%)	284	0.298 (0.442)	0.0968 (0.229)	0.764 (0.833)	0.0442 (0.148)	0.0512 (0.159)	0.0147 (0.081)	0.0307 (0.121)	0.253 (0.399)	0.575 (0.685)	0.12 (0.259)
DHX29	10 (3%)	279	0.156 (0.301)	0.0174 (0.0884)	0.0158 (0.0833)	0.131 (0.272)	0.56 (0.672)	0.302 (0.447)	0.00718 (0.0551)	0.0755 (0.198)	0.123 (0.261)	0.2 (0.348)
BZRAP1	46 (16%)	243	0.101 (0.235)	0.235 (0.38)	0.793 (0.854)	0.837 (0.89)	0.044 (0.147)	0.685 (0.77)	0.877 (0.923)	0.632 (0.724)	0.181 (0.327)	0.0159 (0.0837)
MTG1	9 (3%)	280	0.0855 (0.212)	0.0142 (0.0797)	0.345 (0.489)	0.069 (0.189)	0.374 (0.516)	0.0151 (0.0819)	0.258 (0.404)	0.902 (0.943)	0.47 (0.599)	0.213 (0.362)
POLM	10 (3%)	279	0.121 (0.259)	0.104 (0.239)	0.0286 (0.116)	0.0131 (0.0759)	0.373 (0.514)	0.408 (0.547)	0.0817 (0.207)	0.0576 (0.171)	0.256 (0.402)	0.51 (0.63)
SLC27A3	9 (3%)	280	0.0566 (0.17)	0.187 (0.333)	0.755 (0.826)	0.151 (0.295)	0.294 (0.438)	0.0157 (0.083)	0.0224 (0.101)	0.134 (0.276)	0.321 (0.466)	0.458 (0.589)
CCDC153	8 (3%)	281	0.196 (0.342)	0.0174 (0.0883)	0.0178 (0.0896)	0.175 (0.32)	0.0545 (0.166)	0.158 (0.303)	0.15 (0.295)	0.164 (0.31)	0.417 (0.556)	0.317 (0.462)
CRYGA	10 (3%)	279	0.116 (0.255)	0.0308 (0.121)	0.0939 (0.225)	0.0117 (0.0718)	0.229 (0.375)	0.088 (0.216)	0.269 (0.415)	0.14 (0.284)	1 (1.00)	0.881 (0.925)
PRRG3	8 (3%)	281	0.0575 (0.171)	0.0881 (0.216)	0.239 (0.385)	0.0499 (0.157)	0.0632 (0.181)	0.657 (0.746)	0.00251 (0.0313)	0.166 (0.31)	0.316 (0.461)	0.111 (0.248)
OPTN	9 (3%)	280	0.209 (0.358)	0.162 (0.308)	0.0857 (0.212)	0.0381 (0.137)	0.0122 (0.0738)	0.564 (0.676)	0.0779 (0.201)	0.473 (0.6)	0.458 (0.589)	0.561 (0.673)
RBM43	9 (3%)	280	0.852 (0.903)	0.573 (0.683)	0.498 (0.619)	0.625 (0.719)	0.515 (0.633)	0.04 (0.141)	0.0332 (0.127)	0.899 (0.94)	0.545 (0.659)	0.261 (0.406)
RALGAPB	18 (6%)	271	0.0724 (0.193)	0.145 (0.29)	0.0267 (0.11)	0.00032 (0.00904)	0.475 (0.6)	0.153 (0.298)	0.204 (0.353)	0.311 (0.456)	0.575 (0.685)	0.81 (0.868)
LEMD1	4 (1%)	285	0.391 (0.531)	0.0359 (0.133)	0.76 (0.829)	0.00492 (0.0445)	0.277 (0.422)	0.111 (0.248)	0.0913 (0.22)	0.42 (0.558)	0.442 (0.573)	0.249 (0.396)
NOX5	14 (5%)	275	0.0362 (0.134)	0.151 (0.295)	0.729 (0.803)	0.322 (0.466)	0.311 (0.456)	0.102 (0.237)	0.00457 (0.0425)	0.0783 (0.201)	0.3 (0.444)	0.242 (0.388)
USP21	13 (4%)	276	0.106 (0.241)	0.0768 (0.199)	0.188 (0.333)	0.0562 (0.169)	0.306 (0.45)	0.0664 (0.186)	0.00931 (0.0638)	0.279 (0.424)	0.427 (0.562)	0.0475 (0.153)
AQP8	11 (4%)	278	0.0267 (0.11)	0.0673 (0.187)	0.385 (0.524)	0.625 (0.719)	0.0947 (0.226)	0.0113 (0.0701)	0.0596 (0.174)	0.103 (0.238)	0.231 (0.377)	0.0603 (0.175)
PHACTR2	13 (4%)	276	0.571 (0.682)	0.0025 (0.0313)	0.657 (0.746)	0.213 (0.362)	0.155 (0.3)	0.027 (0.111)	0.719 (0.795)	0.644 (0.736)	0.133 (0.274)	0.758 (0.829)
FASTKD1	11 (4%)	278	0.107 (0.243)	0.262 (0.407)	0.0334 (0.128)	0.392 (0.532)	0.124 (0.264)	0.277 (0.423)	0.0237 (0.103)	0.129 (0.269)	0.159 (0.304)	0.379 (0.52)
ZFC3H1	15 (5%)	274	0.215 (0.364)	0.149 (0.294)	0.381 (0.522)	0.0237 (0.103)	0.18 (0.326)	0.227 (0.375)	0.0687 (0.189)	0.15 (0.295)	0.0152 (0.0821)	0.347 (0.49)
HOXD8	7 (2%)	282	0.251 (0.397)	0.35 (0.493)	0.24 (0.386)	0.431 (0.565)	0.0132 (0.0762)	0.656 (0.746)	0.00779 (0.0574)	0.352 (0.495)	0.314 (0.459)	0.169 (0.314)
TBC1D22B	7 (2%)	282	0.341 (0.486)	0.0231 (0.102)	0.102 (0.237)	0.00014 (0.00552)	0.108 (0.245)	0.104 (0.239)	0.383 (0.523)	0.232 (0.377)	0.477 (0.603)	0.774 (0.842)
PALB2	9 (3%)	280	0.212 (0.361)	0.0746 (0.196)	0.0968 (0.229)	0.00712 (0.055)	0.00255 (0.0317)	0.132 (0.273)	0.0782 (0.201)	0.201 (0.348)	0.838 (0.891)	0.157 (0.302)
ITGA6	6 (2%)	283	0.135 (0.277)	0.536 (0.652)	0.132 (0.273)	0.00234 (0.0303)	0.0274 (0.112)	0.264 (0.41)	0.176 (0.321)	0.353 (0.495)	0.593 (0.699)	0.607 (0.707)
CDC25C	12 (4%)	277	0.0975 (0.23)	0.15 (0.295)	0.212 (0.36)	0.0164 (0.0848)	0.185 (0.331)	0.0479 (0.153)	0.222 (0.372)	0.381 (0.522)	0.441 (0.572)	0.88 (0.925)
BAX	6 (2%)	283	0.156 (0.302)	0.013 (0.0758)	0.472 (0.599)	0.0303 (0.12)	0.172 (0.318)	0.0742 (0.196)	1 (1.00)	0.349 (0.492)	0.432 (0.566)	0.0561 (0.169)
ERBB3	31 (11%)	258	0.0243 (0.104)	0.0848 (0.211)	0.0604 (0.175)	0.0126 (0.0749)	0.513 (0.632)	0.34 (0.485)	0.0853 (0.212)	0.546 (0.66)	0.184 (0.33)	0.256 (0.402)
CNBD1	13 (4%)	276	0.405 (0.545)	0.0455 (0.15)	0.212 (0.361)	0.259 (0.404)	0.109 (0.246)	0.403 (0.544)	0.416 (0.556)	0.301 (0.446)	0.333 (0.477)	0.0129 (0.0756)
DLGAP3	16 (6%)	273	0.227 (0.375)	0.00645 (0.052)	0.354 (0.496)	0.0775 (0.2)	0.0716 (0.192)	0.164 (0.31)	0.0386 (0.138)	0.081 (0.206)	0.108 (0.244)	0.466 (0.596)
RING1	8 (3%)	281	0.437 (0.569)	0.368 (0.509)	0.21 (0.359)	0.43 (0.564)	0.0346 (0.13)	0.536 (0.652)	0.0248 (0.105)	0.213 (0.362)	0.0612 (0.177)	0.116 (0.254)
NEXN	8 (3%)	281	0.277 (0.422)	0.16 (0.305)	0.436 (0.569)	0.321 (0.466)	0.0135 (0.0773)	0.265 (0.411)	0.0026 (0.0319)	0.705 (0.786)	0.62 (0.716)	0.305 (0.45)
SGOL2	11 (4%)	278	0.0789 (0.202)	0.0355 (0.132)	0.11 (0.247)	0.0904 (0.219)	0.0236 (0.103)	0.276 (0.422)	0.167 (0.313)	0.283 (0.427)	0.356 (0.498)	0.0683 (0.188)
FAM116A	6 (2%)	283	0.105 (0.241)	0.381 (0.522)	0.549 (0.662)	0.0197 (0.0946)	0.518 (0.635)	0.0348 (0.131)	0.144 (0.289)	0.355 (0.497)	0.146 (0.291)	0.806 (0.864)
TCHP	10 (3%)	279	0.235 (0.38)	0.625 (0.719)	0.0968 (0.229)	0.0212 (0.0986)	0.0663 (0.185)	0.336 (0.48)	0.0176 (0.0888)	0.345 (0.489)	0.52 (0.637)	0.325 (0.47)
IPO11	12 (4%)	277	0.282 (0.426)	0.0292 (0.117)	0.086 (0.213)	0.025 (0.106)	0.129 (0.269)	0.483 (0.608)	0.0942 (0.226)	0.17 (0.316)	0.633 (0.725)	0.472 (0.599)
C20ORF160	8 (3%)	281	0.195 (0.341)	0.377 (0.518)	0.433 (0.567)	0.401 (0.542)	0.0319 (0.124)	0.103 (0.239)	0.0241 (0.103)	0.214 (0.363)	0.327 (0.471)	0.327 (0.471)
PAPD4	8 (3%)	281	0.0107 (0.0684)	0.111 (0.247)	0.256 (0.402)	0.0554 (0.168)	0.0669 (0.186)	0.0156 (0.0829)	0.661 (0.748)	0.165 (0.31)	0.846 (0.897)	0.581 (0.689)
NCAPH	10 (3%)	279	0.117 (0.255)	0.895 (0.937)	0.0392 (0.139)	0.627 (0.72)	0.402 (0.542)	0.43 (0.565)	0.0428 (0.146)	0.63 (0.723)	0.6 (0.703)	0.289 (0.433)
BRSK1	12 (4%)	277	0.345 (0.489)	0.308 (0.453)	0.585 (0.691)	0.00445 (0.042)	0.313 (0.458)	0.746 (0.817)	0.0103 (0.0669)	0.115 (0.252)	0.794 (0.855)	0.414 (0.553)
PRMT8	8 (3%)	281	0.0587 (0.173)	0.076 (0.198)	0.238 (0.384)	0.142 (0.287)	0.0547 (0.167)	0.432 (0.566)	0.00283 (0.0327)	0.165 (0.31)	0.14 (0.285)	0.0352 (0.132)
PLEKHO1	7 (2%)	282	0.25 (0.397)	0.191 (0.336)	0.463 (0.594)	0.0109 (0.0687)	0.277 (0.423)	0.536 (0.652)	0.00761 (0.0566)	0.23 (0.376)	0.441 (0.572)	0.708 (0.788)
SDAD1	7 (2%)	282	0.252 (0.399)	0.0588 (0.173)	0.362 (0.504)	0.0199 (0.0949)	0.52 (0.637)	0.0698 (0.19)	0.232 (0.377)	0.23 (0.376)	0.587 (0.694)	0.0301 (0.119)
CADPS2	11 (4%)	278	0.779 (0.845)	0.0792 (0.203)	0.111 (0.248)	0.00491 (0.0444)	0.115 (0.252)	0.00679 (0.0538)	0.119 (0.258)	0.599 (0.702)	0.599 (0.702)	0.145 (0.29)
IL2RG	6 (2%)	283	0.177 (0.321)	0.0133 (0.0767)	0.384 (0.524)	0.0217 (0.0993)	0.113 (0.249)	0.434 (0.567)	0.144 (0.289)	0.353 (0.495)	0.717 (0.794)	0.29 (0.434)
SMARCB1	11 (4%)	278	0.0576 (0.171)	0.0434 (0.147)	0.0912 (0.22)	0.161 (0.307)	0.0475 (0.153)	0.208 (0.357)	0.791 (0.853)	0.465 (0.595)	0.903 (0.944)	0.665 (0.751)
BRWD1	21 (7%)	268	0.0632 (0.181)	0.414 (0.553)	0.095 (0.227)	0.0574 (0.171)	0.0474 (0.153)	0.185 (0.331)	0.0242 (0.104)	0.563 (0.675)	0.0582 (0.172)	0.264 (0.409)
TAF1L	22 (8%)	267	0.161 (0.307)	0.148 (0.293)	0.288 (0.432)	0.0399 (0.141)	0.0102 (0.0665)	0.306 (0.451)	0.149 (0.294)	0.1 (0.235)	0.803 (0.861)	0.904 (0.944)
OR2J3	6 (2%)	283	0.576 (0.685)	0.0136 (0.0778)	0.703 (0.784)	0.0426 (0.146)	0.622 (0.717)	0.378 (0.52)	0.875 (0.921)	1 (1.00)	0.717 (0.794)	0.877 (0.922)
HTR1E	9 (3%)	280	0.108 (0.245)	0.0454 (0.15)	0.227 (0.375)	0.0901 (0.219)	0.0815 (0.207)	0.229 (0.375)	0.0325 (0.126)	0.136 (0.279)	0.424 (0.559)	0.375 (0.516)
UGP2	7 (2%)	282	0.109 (0.246)	0.0521 (0.161)	0.104 (0.239)	0.00616 (0.0506)	0.00621 (0.0509)	0.229 (0.375)	0.795 (0.855)	0.402 (0.543)	0.441 (0.572)	0.509 (0.63)
ISG20L2	7 (2%)	282	0.108 (0.245)	0.511 (0.631)	0.151 (0.295)	0.472 (0.599)	0.0371 (0.135)	0.102 (0.238)	0.00743 (0.0561)	0.0703 (0.19)	0.582 (0.689)	0.287 (0.432)
CEP57	7 (2%)	282	0.0755 (0.198)	0.35 (0.492)	0.0584 (0.172)	0.0409 (0.142)	0.0143 (0.0801)	0.103 (0.239)	0.0522 (0.161)	0.069 (0.189)	0.574 (0.684)	0.31 (0.455)
GNAZ	15 (5%)	274	0.00513 (0.0454)	0.339 (0.483)	0.621 (0.716)	0.275 (0.421)	0.216 (0.365)	0.0156 (0.083)	0.0668 (0.186)	0.151 (0.295)	0.876 (0.922)	0.175 (0.32)
KCNH4	7 (2%)	282	0.575 (0.685)	0.11 (0.247)	0.188 (0.333)	0.00997 (0.0659)	0.452 (0.584)	0.00444 (0.042)	0.0529 (0.162)	0.354 (0.495)	0.548 (0.661)	0.0744 (0.196)
IGF2BP3	5 (2%)	284	0.602 (0.704)	0.0377 (0.136)	1 (1.00)	0.304 (0.449)	0.409 (0.549)	0.228 (0.375)	0.0307 (0.121)	0.252 (0.398)	0.244 (0.391)	0.711 (0.79)
PLAG1	11 (4%)	278	0.0866 (0.214)	0.074 (0.196)	0.234 (0.379)	0.353 (0.495)	0.165 (0.31)	0.145 (0.29)	0.00514 (0.0455)	0.0404 (0.142)	0.963 (0.997)	0.221 (0.371)
STX2	6 (2%)	283	0.439 (0.571)	0.0207 (0.0976)	0.907 (0.948)	0.0404 (0.142)	0.721 (0.795)	0.228 (0.375)	0.669 (0.755)	0.352 (0.494)	0.749 (0.82)	0.712 (0.79)
BMPR1B	7 (2%)	282	0.0353 (0.132)	0.0473 (0.153)	0.867 (0.915)	0.765 (0.834)	0.372 (0.514)	0.131 (0.271)	0.385 (0.524)	0.07 (0.19)	0.588 (0.694)	0.0556 (0.168)
C7ORF58	15 (5%)	274	0.586 (0.692)	0.00306 (0.034)	0.464 (0.595)	0.0111 (0.0695)	0.195 (0.341)	0.0711 (0.191)	0.188 (0.333)	0.398 (0.538)	0.713 (0.791)	0.714 (0.792)
B3GNT5	10 (3%)	279	0.113 (0.249)	0.421 (0.558)	0.504 (0.626)	0.304 (0.449)	0.0495 (0.156)	0.409 (0.548)	0.0101 (0.0665)	0.0583 (0.172)	0.385 (0.524)	0.254 (0.4)
PLA2G15	9 (3%)	280	0.265 (0.41)	0.508 (0.629)	0.151 (0.295)	0.0124 (0.0744)	0.402 (0.543)	0.00142 (0.0222)	0.153 (0.298)	0.472 (0.599)	0.981 (1.00)	0.813 (0.869)
SERPINB8	8 (3%)	281	0.234 (0.379)	0.24 (0.386)	0.0387 (0.138)	0.0801 (0.205)	0.0602 (0.175)	0.047 (0.153)	0.66 (0.748)	0.798 (0.857)	0.165 (0.31)	0.356 (0.498)
MKL1	13 (4%)	276	0.209 (0.358)	0.0851 (0.212)	0.107 (0.243)	0.0158 (0.0833)	0.113 (0.249)	0.00644 (0.0519)	0.175 (0.32)	0.646 (0.738)	0.34 (0.485)	0.72 (0.795)
ACP1	5 (2%)	284	0.3 (0.445)	0.0366 (0.135)	0.424 (0.56)	0.0849 (0.211)	0.245 (0.391)	0.161 (0.306)	0.26 (0.405)	0.72 (0.795)	0.00289 (0.0331)	0.202 (0.35)
NEK7	4 (1%)	285	0.471 (0.599)	0.859 (0.909)	0.522 (0.638)	0.254 (0.4)	0.0208 (0.0977)	0.0481 (0.154)	0.0908 (0.22)	0.813 (0.87)	0.368 (0.51)	0.0857 (0.212)
UBC	7 (2%)	282	0.575 (0.685)	0.133 (0.274)	0.132 (0.273)	0.0203 (0.0965)	0.122 (0.26)	0.05 (0.157)	0.066 (0.185)	0.228 (0.375)	0.695 (0.777)	0.622 (0.717)
CNKSR2	12 (4%)	277	0.948 (0.983)	1 (1.00)	0.00337 (0.0358)	0.191 (0.337)	0.481 (0.606)	0.176 (0.32)	0.0185 (0.0918)	0.157 (0.302)	0.962 (0.997)	0.845 (0.897)
GPATCH2	7 (2%)	282	0.18 (0.325)	0.189 (0.334)	0.0284 (0.115)	0.00558 (0.0483)	0.0653 (0.184)	0.104 (0.239)	0.068 (0.188)	0.231 (0.377)	0.381 (0.522)	0.238 (0.384)
LRFN3	18 (6%)	271	0.19 (0.335)	0.02 (0.0953)	0.0825 (0.208)	0.00501 (0.045)	0.0848 (0.211)	0.0692 (0.189)	0.101 (0.236)	0.0903 (0.219)	0.269 (0.415)	0.0662 (0.185)
RINT1	5 (2%)	284	0.128 (0.268)	0.0602 (0.175)	0.0695 (0.189)	0.0506 (0.158)	0.151 (0.295)	0.0146 (0.0809)	0.0305 (0.121)	0.252 (0.399)	0.72 (0.795)	0.645 (0.737)
ARHGEF17	17 (6%)	272	0.00315 (0.0344)	0.0847 (0.211)	0.584 (0.691)	0.307 (0.452)	0.00278 (0.0326)	0.151 (0.295)	0.192 (0.337)	0.22 (0.37)	0.2 (0.348)	0.2 (0.347)
CLGN	8 (3%)	281	0.195 (0.341)	0.108 (0.245)	0.153 (0.297)	0.0128 (0.0755)	0.232 (0.377)	0.611 (0.709)	0.035 (0.131)	0.165 (0.31)	0.889 (0.932)	0.598 (0.702)
NDST2	8 (3%)	281	0.235 (0.38)	0.347 (0.49)	0.346 (0.49)	0.0315 (0.123)	0.00156 (0.0235)	0.266 (0.411)	0.0744 (0.196)	0.215 (0.364)	0.4 (0.541)	0.574 (0.684)
EPB49	8 (3%)	281	0.221 (0.371)	0.349 (0.492)	0.292 (0.437)	0.175 (0.32)	0.0166 (0.0857)	0.422 (0.558)	0.0362 (0.134)	0.303 (0.449)	0.66 (0.748)	0.25 (0.397)
EAF2	7 (2%)	282	0.0359 (0.133)	0.0133 (0.0765)	0.908 (0.948)	0.552 (0.664)	0.184 (0.33)	0.103 (0.238)	0.0668 (0.186)	0.0701 (0.19)	0.661 (0.748)	0.478 (0.604)
PIWIL2	6 (2%)	283	0.176 (0.321)	0.108 (0.245)	0.287 (0.431)	0.16 (0.305)	0.0333 (0.127)	0.537 (0.652)	0.0159 (0.0836)	0.119 (0.258)	0.149 (0.294)	0.163 (0.308)
SLC4A3	15 (5%)	274	0.0522 (0.161)	0.0518 (0.16)	0.0854 (0.212)	0.327 (0.472)	0.0826 (0.208)	0.0265 (0.11)	0.0216 (0.0992)	0.0594 (0.174)	0.126 (0.267)	0.0906 (0.219)
MMEL1	6 (2%)	283	0.121 (0.26)	0.148 (0.294)	0.0441 (0.148)	0.0219 (0.0995)	0.347 (0.49)	0.0503 (0.158)	0.0968 (0.229)	0.121 (0.259)
MUT	6 (2%)	283	0.106 (0.241)	0.0598 (0.175)	0.586 (0.692)	0.0137 (0.0779)	0.065 (0.183)	0.103 (0.239)	0.0159 (0.0837)	0.121 (0.259)	0.66 (0.748)	0.124 (0.263)
NT5DC1	6 (2%)	283	0.222 (0.372)	0.0206 (0.0974)	0.483 (0.609)	0.0195 (0.0938)	0.158 (0.303)	0.318 (0.463)	0.172 (0.318)	0.481 (0.606)	0.168 (0.314)	0.454 (0.585)
SLC38A6	8 (3%)	281	0.456 (0.587)	0.00608 (0.0504)	0.219 (0.369)	0.0704 (0.19)	0.0592 (0.174)	0.0471 (0.153)	0.223 (0.372)	0.166 (0.311)	0.128 (0.269)	0.254 (0.4)
CLIP1	15 (5%)	274	0.622 (0.717)	0.0328 (0.126)	0.471 (0.599)	0.0148 (0.0814)	0.201 (0.348)	0.0508 (0.158)	0.439 (0.571)	0.289 (0.433)	0.763 (0.832)	0.498 (0.619)
GPR114	9 (3%)	280	0.209 (0.358)	0.0286 (0.116)	0.327 (0.472)	0.211 (0.36)	0.182 (0.328)	0.00665 (0.0531)	0.469 (0.598)	0.473 (0.6)	0.467 (0.597)	0.488 (0.612)
DQX1	9 (3%)	280	0.487 (0.611)	0.334 (0.478)	0.553 (0.665)	0.0104 (0.0674)	0.185 (0.331)	0.00694 (0.0543)	0.26 (0.405)	0.253 (0.399)	0.138 (0.281)	0.382 (0.523)
CYP7B1	16 (6%)	273	0.862 (0.91)	0.784 (0.85)	0.271 (0.417)	0.115 (0.253)	0.445 (0.576)	0.0324 (0.125)	0.305 (0.45)	0.123 (0.262)	1 (1.00)	0.00305 (0.0339)
C3	25 (9%)	264	0.0261 (0.109)	0.0561 (0.169)	0.103 (0.239)	0.0508 (0.158)	0.0613 (0.177)	0.334 (0.478)	0.0695 (0.189)	0.289 (0.433)	0.0651 (0.184)	0.0465 (0.152)
CDC5L	15 (5%)	274	0.147 (0.293)	0.0131 (0.076)	0.59 (0.696)	0.0203 (0.0966)	0.104 (0.239)	0.214 (0.363)	0.0604 (0.175)	0.13 (0.27)	0.548 (0.661)	0.531 (0.647)
PCBP2	4 (1%)	285	0.199 (0.346)	0.0361 (0.134)			0.113 (0.249)	0.0494 (0.156)	0.0901 (0.219)	0.418 (0.557)	0.229 (0.375)	0.484 (0.609)
AP3M2	10 (3%)	279	0.109 (0.246)	0.507 (0.628)	0.982 (1.00)	0.0165 (0.0854)	0.0581 (0.172)	0.413 (0.552)	0.0447 (0.149)	0.142 (0.287)	0.719 (0.795)	0.492 (0.615)
HOOK1	6 (2%)	283	0.176 (0.321)	0.349 (0.492)	0.909 (0.948)	0.04 (0.141)	0.0344 (0.13)	0.228 (0.375)	0.144 (0.289)	0.121 (0.26)	0.859 (0.909)	0.308 (0.453)
BTRC	8 (3%)	281	0.0574 (0.171)	0.759 (0.829)	0.61 (0.709)	0.00017 (0.00609)	0.276 (0.422)	0.157 (0.302)	0.0362 (0.134)	0.166 (0.31)	0.927 (0.965)	0.158 (0.303)
TCF7	8 (3%)	281	0.0499 (0.157)	0.836 (0.89)	0.266 (0.411)	0.175 (0.32)	0.0129 (0.0755)	0.104 (0.239)	0.224 (0.373)	0.798 (0.857)	0.814 (0.87)	0.602 (0.704)
FIGNL1	9 (3%)	280	0.148 (0.294)	0.0924 (0.222)	0.26 (0.405)	0.00039 (0.0102)	0.0478 (0.153)	0.0893 (0.218)	0.151 (0.295)	0.12 (0.259)	0.559 (0.672)	0.222 (0.372)
PRKAR1B	5 (2%)	284	0.299 (0.444)	0.0675 (0.187)	0.388 (0.528)	0.255 (0.4)	0.0469 (0.153)	0.228 (0.375)	0.173 (0.318)	0.72 (0.795)	0.0462 (0.152)	0.486 (0.611)
CASKIN2	9 (3%)	280	0.0559 (0.169)	0.773 (0.841)	0.825 (0.88)	0.0172 (0.0878)	0.561 (0.673)	0.0433 (0.146)	0.468 (0.597)	0.252 (0.399)	0.254 (0.4)	0.283 (0.427)
TM6SF1	6 (2%)	283	0.176 (0.321)	0.0956 (0.228)	0.0409 (0.142)	0.0219 (0.0995)	0.0628 (0.18)	0.102 (0.238)	0.147 (0.292)	0.12 (0.259)	0.777 (0.843)	0.0744 (0.196)
WDR60	8 (3%)	281	0.0845 (0.211)	0.0236 (0.103)	0.757 (0.828)	0.0104 (0.0671)	0.103 (0.238)	0.158 (0.303)	0.153 (0.297)	0.164 (0.31)	0.0522 (0.161)	0.777 (0.843)
COX8C	4 (1%)	285	0.335 (0.479)	0.0686 (0.188)	0.76 (0.829)	0.0429 (0.146)	0.0626 (0.18)	0.111 (0.248)	0.687 (0.771)	0.658 (0.746)	0.433 (0.567)	0.0428 (0.146)
CSNK1G3	7 (2%)	282	0.18 (0.326)	0.186 (0.332)	0.149 (0.294)	0.00131 (0.0211)	0.0335 (0.128)	0.23 (0.376)	0.382 (0.522)	0.231 (0.377)	0.81 (0.868)	0.419 (0.557)
MMP10	8 (3%)	281	0.236 (0.382)	0.103 (0.239)	0.06 (0.175)	0.0366 (0.134)	0.0354 (0.132)	0.634 (0.726)	0.904 (0.945)	0.214 (0.363)	0.548 (0.661)	0.224 (0.373)
GABRD	6 (2%)	283	0.176 (0.321)	0.408 (0.548)	0.759 (0.829)	0.594 (0.699)	0.148 (0.294)	0.0747 (0.197)	0.145 (0.29)	0.119 (0.258)	0.00293 (0.0334)	0.0378 (0.136)
SLC2A12	7 (2%)	282	0.491 (0.614)	0.0513 (0.159)	0.547 (0.66)	0.417 (0.556)	0.0668 (0.186)	0.0496 (0.156)	0.00753 (0.0564)	0.0692 (0.189)	0.715 (0.793)	0.441 (0.572)
FER	11 (4%)	278	0.601 (0.704)	0.296 (0.441)	0.0176 (0.0889)	0.00299 (0.0336)	0.0929 (0.223)	0.0688 (0.189)	0.198 (0.346)	0.282 (0.426)	0.301 (0.446)	0.91 (0.949)
C2ORF43	3 (1%)	286	0.0804 (0.205)		0.0466 (0.152)	0.086 (0.213)	0.0262 (0.109)	0.609 (0.708)	0.791 (0.853)	0.424 (0.559)
OSBPL2	7 (2%)	282	0.76 (0.83)	0.578 (0.686)	0.0088 (0.0625)	0.00174 (0.0257)	0.555 (0.667)	0.28 (0.425)	0.149 (0.294)	0.514 (0.632)	0.0938 (0.225)	0.772 (0.84)
C19ORF70	6 (2%)	283	0.157 (0.302)	0.0138 (0.0782)	0.0849 (0.211)	0.0765 (0.199)	0.0502 (0.158)	0.0735 (0.195)	0.142 (0.288)	0.12 (0.259)	0.113 (0.249)	0.0364 (0.134)
ITGAV	13 (4%)	276	0.555 (0.667)	0.124 (0.263)	0.379 (0.52)	0.792 (0.854)	0.742 (0.815)	0.0379 (0.136)	0.129 (0.269)	0.105 (0.24)	0.144 (0.289)	0.0464 (0.152)
CHST9	6 (2%)	283	0.407 (0.547)	0.225 (0.373)	0.847 (0.898)	0.0115 (0.071)	0.582 (0.689)	1 (1.00)	0.578 (0.686)	0.482 (0.608)	0.233 (0.377)	0.049 (0.155)
TOP1	10 (3%)	279	0.497 (0.619)	0.144 (0.289)	0.181 (0.327)	0.0021 (0.0284)	0.264 (0.409)	0.144 (0.289)	0.0311 (0.122)	0.174 (0.319)	0.545 (0.659)	0.509 (0.63)
VASH1	7 (2%)	282	0.0354 (0.132)	0.187 (0.333)	0.849 (0.9)	0.218 (0.366)	0.275 (0.421)	0.0155 (0.0829)	0.0669 (0.186)	0.231 (0.376)	0.932 (0.969)	0.743 (0.815)
DENND1C	7 (2%)	282	0.578 (0.686)	0.509 (0.63)	0.217 (0.366)	0.00938 (0.0641)	0.0333 (0.127)	0.23 (0.376)	0.0535 (0.164)	0.779 (0.844)	0.548 (0.661)	0.21 (0.359)
KDM3B	17 (6%)	272	0.194 (0.34)	0.0991 (0.233)	0.0586 (0.173)	0.00856 (0.0616)	0.00209 (0.0284)	0.153 (0.297)	0.0641 (0.182)	0.182 (0.329)	0.617 (0.714)	0.232 (0.377)
EML3	10 (3%)	279	0.137 (0.281)	0.317 (0.462)	0.192 (0.337)	0.447 (0.578)	0.0168 (0.0861)	0.651 (0.742)	0.0103 (0.0669)	0.0764 (0.199)	0.447 (0.578)	0.115 (0.252)
RHOA	16 (6%)	273	0.129 (0.269)	0.431 (0.565)	0.937 (0.973)	0.86 (0.909)	0.41 (0.55)	0.557 (0.669)	0.0369 (0.135)	0.184 (0.33)	0.0849 (0.211)	0.515 (0.633)
SMAD4	24 (8%)	265	0.375 (0.516)	0.807 (0.865)	0.101 (0.235)	0.0599 (0.175)	0.0711 (0.191)	0.614 (0.711)	0.0249 (0.106)	0.426 (0.561)	0.107 (0.243)	0.669 (0.755)
AOC3	13 (4%)	276	0.887 (0.93)	0.101 (0.235)	0.0611 (0.177)	0.0478 (0.153)	0.187 (0.332)	0.318 (0.463)	0.367 (0.509)	0.124 (0.263)	0.302 (0.448)	0.374 (0.516)
TMEM41A	6 (2%)	283	0.133 (0.275)	0.0602 (0.175)	0.0687 (0.189)	0.226 (0.374)	0.453 (0.584)	0.0361 (0.133)	0.147 (0.293)	0.353 (0.495)	0.656 (0.746)	0.775 (0.842)
NT5M	5 (2%)	284	0.51 (0.63)	0.225 (0.373)	0.466 (0.596)	0.086 (0.213)	0.613 (0.711)	0.435 (0.568)	0.0314 (0.122)	0.249 (0.396)	0.231 (0.376)	0.26 (0.405)
GAS6	16 (6%)	273	0.791 (0.853)	0.0163 (0.0848)	0.547 (0.661)	0.383 (0.523)	0.304 (0.449)	0.244 (0.391)	0.0887 (0.217)	0.311 (0.456)	0.117 (0.255)	0.431 (0.565)
C1QTNF5	5 (2%)	284	0.126 (0.267)	0.0661 (0.185)	0.551 (0.663)	0.00984 (0.0656)	0.106 (0.241)	0.435 (0.568)	0.313 (0.458)	0.512 (0.632)	0.878 (0.923)	1 (1.00)
WDR5	7 (2%)	282	0.342 (0.487)	1 (1.00)	1 (1.00)	0.0443 (0.148)	0.975 (1.00)	1 (1.00)	0.0648 (0.183)	0.884 (0.928)	0.44 (0.571)	0.707 (0.787)
PRSS36	11 (4%)	278	0.0701 (0.19)	0.0198 (0.0949)	0.358 (0.499)	0.129 (0.269)	0.246 (0.393)	0.0901 (0.219)	0.0607 (0.176)	0.553 (0.665)	0.981 (1.00)	0.291 (0.436)
SLC16A6	7 (2%)	282	0.25 (0.397)	0.0206 (0.0974)	0.722 (0.795)	0.836 (0.89)	0.273 (0.419)	0.608 (0.707)	0.232 (0.377)	0.0702 (0.19)	0.109 (0.246)	0.25 (0.397)
KIAA0240	12 (4%)	277	0.104 (0.239)	0.589 (0.695)	0.221 (0.371)	0.0374 (0.136)	0.0817 (0.207)	0.245 (0.391)	0.223 (0.372)	0.789 (0.852)	0.492 (0.615)	0.65 (0.74)
SNAPC1	7 (2%)	282	0.187 (0.332)	0.0152 (0.082)	0.129 (0.269)	0.319 (0.464)	0.128 (0.268)	0.157 (0.302)	0.0534 (0.163)	0.353 (0.495)	0.258 (0.403)	0.509 (0.63)
ADAM30	14 (5%)	275	0.69 (0.774)	0.601 (0.704)	0.157 (0.302)	0.328 (0.472)	0.591 (0.696)	0.112 (0.249)	0.0176 (0.0889)	0.104 (0.239)	0.45 (0.581)	0.324 (0.468)
PMEPA1	7 (2%)	282	0.109 (0.246)	0.121 (0.259)	0.0575 (0.171)	0.228 (0.375)	0.103 (0.238)	0.431 (0.565)	0.0073 (0.0557)	0.0688 (0.189)	0.252 (0.398)	0.11 (0.247)
C19ORF40	6 (2%)	283	0.577 (0.685)	1 (1.00)	0.0151 (0.0819)	0.161 (0.307)	0.72 (0.795)	0.537 (0.652)	0.0979 (0.231)	0.12 (0.258)	0.59 (0.696)	0.607 (0.707)
SREBF2	10 (3%)	279	0.766 (0.835)	0.0761 (0.198)	0.319 (0.464)	0.179 (0.324)	0.205 (0.354)	0.32 (0.465)	0.0108 (0.0686)	0.345 (0.489)	0.362 (0.504)	0.971 (1.00)
GPR161	12 (4%)	277	0.276 (0.422)	0.658 (0.746)	0.0117 (0.0718)	0.16 (0.305)	0.0772 (0.2)	0.175 (0.32)	0.0946 (0.226)	0.114 (0.252)	0.129 (0.269)	0.269 (0.415)
UBQLN2	5 (2%)	284	0.149 (0.294)	0.493 (0.615)	0.259 (0.404)	0.0333 (0.127)	0.173 (0.319)	0.23 (0.376)	0.172 (0.318)	0.514 (0.632)	0.778 (0.844)	0.364 (0.506)
INF2	11 (4%)	278	0.156 (0.301)	0.17 (0.316)	0.133 (0.274)	0.624 (0.719)	0.0596 (0.174)	0.039 (0.139)	0.117 (0.256)	0.283 (0.427)	0.577 (0.685)	0.377 (0.518)
DSTN	5 (2%)	284	0.472 (0.599)	0.278 (0.423)	0.118 (0.257)	0.253 (0.399)	0.276 (0.422)	0.607 (0.707)	0.0313 (0.122)	0.25 (0.397)	0.361 (0.503)	0.311 (0.456)
C1R	5 (2%)	284	0.335 (0.479)	0.133 (0.274)	0.439 (0.571)	0.0101 (0.0665)	0.0621 (0.179)	0.607 (0.707)	0.314 (0.458)	0.33 (0.475)	0.933 (0.97)	1 (1.00)
CASP8	18 (6%)	271	0.00335 (0.0358)	0.0774 (0.2)	0.302 (0.447)	0.0755 (0.198)	0.166 (0.31)	0.1 (0.235)	0.132 (0.273)	0.367 (0.509)	0.0573 (0.171)	0.796 (0.855)
NAA25	14 (5%)	275	0.622 (0.717)	0.0168 (0.0862)	0.154 (0.298)	0.128 (0.268)	0.959 (0.993)	1 (1.00)	1 (1.00)	0.712 (0.79)	0.976 (1.00)	0.249 (0.396)
GLIPR1L2	10 (3%)	279	0.262 (0.407)	0.375 (0.516)	0.626 (0.719)	0.265 (0.411)	0.0232 (0.102)	0.265 (0.41)	0.272 (0.417)	0.342 (0.487)	0.773 (0.841)	0.135 (0.278)
TENC1	11 (4%)	278	0.362 (0.504)	0.776 (0.843)	0.576 (0.685)	0.185 (0.331)	0.757 (0.828)	1 (1.00)	0.197 (0.343)	0.201 (0.348)	0.0406 (0.142)	0.424 (0.56)
RAD51AP2	12 (4%)	277	0.427 (0.562)	0.735 (0.808)	0.231 (0.377)	0.0879 (0.216)	0.373 (0.514)	0.0686 (0.188)	0.0113 (0.0703)	0.157 (0.302)	0.119 (0.258)	0.658 (0.746)
GPR160	8 (3%)	281	0.196 (0.342)	0.146 (0.291)	0.609 (0.708)	0.00038 (0.0102)	0.365 (0.507)	0.321 (0.466)	0.151 (0.295)	0.705 (0.786)	0.787 (0.852)	0.793 (0.855)
ABCB6	8 (3%)	281	0.0584 (0.172)	0.189 (0.334)	0.165 (0.31)	0.516 (0.634)	0.0645 (0.182)	0.656 (0.746)	0.0367 (0.135)	0.214 (0.363)	0.151 (0.295)	0.137 (0.28)
RAB14	8 (3%)	281	0.507 (0.628)	0.229 (0.375)	0.162 (0.308)	0.00105 (0.0188)	0.718 (0.795)	0.229 (0.375)	0.223 (0.372)	0.707 (0.787)	0.462 (0.593)	0.783 (0.849)
ABLIM2	11 (4%)	278	0.0631 (0.181)	0.157 (0.302)	0.319 (0.464)	0.022 (0.0995)	0.201 (0.349)	0.0993 (0.233)	0.0606 (0.176)	0.467 (0.597)	0.118 (0.257)	0.209 (0.358)
INTS12	6 (2%)	283	0.411 (0.551)	0.28 (0.424)	0.966 (0.999)	0.00505 (0.0452)	0.434 (0.567)	0.687 (0.771)	0.145 (0.29)	0.481 (0.607)	0.366 (0.508)	0.773 (0.841)
RNF111	10 (3%)	279	0.0654 (0.184)	0.107 (0.243)	0.183 (0.329)	0.0151 (0.0819)	0.231 (0.377)	0.562 (0.674)	0.0818 (0.207)	0.344 (0.488)	0.788 (0.852)	0.0944 (0.226)
GATA3	16 (6%)	273	0.0846 (0.211)	0.0843 (0.211)	0.184 (0.33)	0.052 (0.161)	0.0803 (0.205)	0.0402 (0.142)	0.138 (0.281)	0.159 (0.304)	0.894 (0.936)	0.419 (0.557)
NFE2L1	9 (3%)	280	0.488 (0.611)	0.652 (0.743)	0.238 (0.384)	0.43 (0.564)	0.137 (0.28)	0.0407 (0.142)	0.151 (0.295)	0.137 (0.281)	0.332 (0.477)	0.249 (0.396)
SERPINB12	7 (2%)	282	0.817 (0.872)	0.654 (0.744)	0.369 (0.511)	0.223 (0.372)	0.103 (0.239)	0.0474 (0.153)	0.0516 (0.16)	0.356 (0.497)	0.518 (0.635)	0.402 (0.543)
ART1	7 (2%)	282	0.495 (0.617)	0.421 (0.558)	0.0888 (0.218)	0.0758 (0.198)	0.0737 (0.196)	0.0476 (0.153)	0.0531 (0.163)	0.356 (0.498)	0.456 (0.587)	0.264 (0.409)
PLA2G1B	4 (1%)	285	0.603 (0.705)	0.175 (0.32)	0.718 (0.795)	0.149 (0.294)	0.907 (0.947)	0.835 (0.889)	0.822 (0.877)	0.812 (0.869)	0.00992 (0.0657)	0.442 (0.573)
TRAM1L1	13 (4%)	276	0.225 (0.373)	0.00112 (0.0194)	0.851 (0.901)	0.229 (0.375)	0.679 (0.765)	0.187 (0.332)	0.444 (0.574)	0.234 (0.379)	0.883 (0.927)	0.595 (0.7)
WNT1	8 (3%)	281	0.734 (0.808)	0.209 (0.358)	0.15 (0.294)	1 (1.00)	0.743 (0.816)	0.0192 (0.0932)	0.428 (0.563)	0.383 (0.523)	0.58 (0.688)	0.366 (0.508)
FBXO48	4 (1%)	285	0.392 (0.532)	0.149 (0.294)	0.0571 (0.171)	0.591 (0.697)	0.349 (0.492)	0.0486 (0.155)	0.0902 (0.219)	0.418 (0.557)	0.657 (0.746)	0.608 (0.707)
EOMES	8 (3%)	281	0.0575 (0.171)	0.0474 (0.153)	0.76 (0.83)	0.865 (0.913)	0.282 (0.426)	0.699 (0.781)	0.814 (0.87)	0.556 (0.668)	0.928 (0.966)	0.773 (0.841)
MLXIPL	14 (5%)	275	0.282 (0.426)	0.532 (0.648)	0.608 (0.707)	0.0702 (0.19)	0.195 (0.342)	0.207 (0.357)	0.0243 (0.104)	0.711 (0.79)	0.992 (1.00)	0.825 (0.88)
ACTL6A	8 (3%)	281	0.0854 (0.212)	0.00505 (0.0452)	0.172 (0.318)	0.0661 (0.185)	0.133 (0.275)	0.104 (0.239)	0.224 (0.372)	0.165 (0.31)	0.888 (0.932)	0.407 (0.547)
CTSD	7 (2%)	282	0.495 (0.617)	0.238 (0.384)	0.848 (0.898)	0.217 (0.366)	0.433 (0.567)	0.0473 (0.153)	0.618 (0.715)	0.514 (0.632)	0.521 (0.637)	0.202 (0.349)
CTNNA1	13 (4%)	276	0.106 (0.242)	0.0805 (0.205)	0.492 (0.614)	0.271 (0.417)	0.022 (0.0995)	0.743 (0.815)	0.414 (0.554)	0.231 (0.377)	0.746 (0.818)	0.194 (0.34)
KIAA1804	8 (3%)	281	0.737 (0.81)	0.109 (0.246)	0.875 (0.921)	0.599 (0.702)	1 (1.00)	0.646 (0.738)	0.0238 (0.103)	0.342 (0.487)	0.282 (0.426)	0.29 (0.434)
MAMSTR	4 (1%)	285	0.472 (0.599)	0.693 (0.776)	0.683 (0.768)	0.00926 (0.0637)	0.306 (0.451)	0.111 (0.248)	0.0897 (0.219)	0.417 (0.556)	0.369 (0.51)	0.606 (0.707)
CCDC148	5 (2%)	284	0.456 (0.587)	0.109 (0.245)	0.405 (0.545)	0.319 (0.464)	0.35 (0.493)	0.159 (0.305)	0.0308 (0.121)	0.514 (0.632)	0.437 (0.57)	0.313 (0.458)
TAF6	12 (4%)	277	0.0575 (0.171)	0.295 (0.44)	0.173 (0.318)	0.0236 (0.103)	0.14 (0.284)	0.478 (0.603)	0.524 (0.64)	0.414 (0.553)	0.827 (0.881)	0.54 (0.654)
ALG10	11 (4%)	278	0.362 (0.504)	0.0144 (0.0802)	0.132 (0.273)	0.105 (0.24)	0.727 (0.801)	0.713 (0.791)	0.793 (0.854)	0.28 (0.425)	0.592 (0.698)	0.97 (1.00)
MYOCD	13 (4%)	276	0.00275 (0.0325)	0.143 (0.288)	0.287 (0.431)	0.883 (0.927)	0.145 (0.29)	0.865 (0.913)	0.39 (0.529)	0.278 (0.423)	0.115 (0.252)	0.364 (0.506)
YIF1A	3 (1%)	286	0.546 (0.66)		0.507 (0.628)	0.042 (0.145)	0.276 (0.422)	0.11 (0.246)	0.789 (0.853)	0.422 (0.558)
CEP120	10 (3%)	279	0.0419 (0.144)	0.124 (0.263)	0.0885 (0.217)	0.15 (0.295)	0.109 (0.245)	0.0894 (0.218)	0.0822 (0.208)	0.059 (0.173)	0.791 (0.853)	0.619 (0.715)
SOHLH2	14 (5%)	275	0.525 (0.641)	0.239 (0.385)	0.952 (0.987)	0.752 (0.824)	0.468 (0.597)	0.171 (0.317)	0.438 (0.57)	0.285 (0.429)	0.0407 (0.142)	0.195 (0.341)
SGK3	5 (2%)	284	0.51 (0.63)	0.149 (0.294)	0.174 (0.32)	0.00973 (0.0652)	0.287 (0.431)	0.836 (0.89)	0.315 (0.459)	0.252 (0.398)
CTNNB1	18 (6%)	271	0.0728 (0.194)	0.21 (0.358)	0.172 (0.318)	0.0523 (0.161)	0.00374 (0.0379)	0.373 (0.515)	0.0669 (0.186)	0.368 (0.509)	0.282 (0.426)	0.118 (0.257)
PRICKLE4	6 (2%)	283	0.12 (0.259)	1 (1.00)	0.327 (0.472)	0.322 (0.466)	0.139 (0.283)	0.653 (0.743)	0.0157 (0.083)	0.349 (0.492)	0.368 (0.51)	0.363 (0.506)
LMTK3	8 (3%)	281	0.493 (0.615)	0.487 (0.611)	0.677 (0.763)	0.27 (0.416)	0.0489 (0.155)	0.422 (0.558)	0.427 (0.562)	0.217 (0.366)	0.309 (0.454)	0.442 (0.573)
MRPL2	6 (2%)	283	0.151 (0.295)	0.281 (0.426)	0.0888 (0.218)	0.0595 (0.174)	0.0107 (0.0684)	0.104 (0.239)	0.094 (0.225)	0.118 (0.256)	0.661 (0.748)	0.478 (0.603)
XK	5 (2%)	284	0.701 (0.783)	1 (1.00)	0.26 (0.405)	0.0094 (0.0641)	0.878 (0.923)	0.63 (0.723)	0.853 (0.904)	0.615 (0.712)	0.932 (0.969)	1 (1.00)
CNOT6	7 (2%)	282	0.18 (0.326)	0.121 (0.26)	0.237 (0.383)	0.0493 (0.156)	0.121 (0.26)	0.686 (0.771)	0.232 (0.377)	0.4 (0.541)	0.695 (0.777)	0.0511 (0.159)
TUBE1	7 (2%)	282	0.251 (0.397)	0.146 (0.291)	0.0716 (0.192)	0.0103 (0.0669)	0.0995 (0.233)	0.538 (0.653)	0.38 (0.522)	0.356 (0.498)	0.0887 (0.217)	0.647 (0.738)
SAFB	9 (3%)	280	0.24 (0.386)	0.506 (0.628)	0.222 (0.372)	0.0207 (0.0976)	0.073 (0.194)	1 (1.00)	0.568 (0.679)	0.531 (0.647)	0.712 (0.79)	0.917 (0.956)
CREM	4 (1%)	285	0.603 (0.705)	0.0977 (0.231)	0.506 (0.628)	0.0427 (0.146)	0.105 (0.24)	0.433 (0.567)	0.0902 (0.219)	0.418 (0.557)	0.102 (0.238)	0.708 (0.787)
EYA4	15 (5%)	274	0.35 (0.493)	0.815 (0.871)	0.0457 (0.15)	0.272 (0.417)	0.383 (0.523)	0.406 (0.546)	0.188 (0.333)	0.287 (0.431)	1 (1.00)	0.89 (0.932)
H2AFY2	7 (2%)	282	0.787 (0.852)	0.144 (0.29)	0.923 (0.961)	0.46 (0.59)	0.738 (0.811)	0.868 (0.915)	0.622 (0.717)	0.314 (0.459)	0.0302 (0.12)	0.646 (0.738)
RDX	7 (2%)	282	0.731 (0.805)	0.219 (0.368)	0.201 (0.348)	0.0021 (0.0284)	0.412 (0.551)	0.537 (0.652)	0.619 (0.716)	0.514 (0.632)	0.419 (0.557)	0.0592 (0.174)
CHRNB3	11 (4%)	278	0.144 (0.29)	0.366 (0.508)	0.907 (0.948)	0.897 (0.939)	0.491 (0.614)	0.143 (0.289)	0.0227 (0.101)	0.283 (0.427)	0.655 (0.745)	1 (1.00)
MYCT1	6 (2%)	283	0.529 (0.645)	0.25 (0.397)	0.243 (0.389)	0.0594 (0.174)	0.353 (0.495)	0.54 (0.654)	0.176 (0.321)	0.196 (0.342)	0.662 (0.749)	0.0408 (0.142)
PIGT	8 (3%)	281	0.0831 (0.209)	0.0305 (0.121)	0.299 (0.444)	0.288 (0.432)	0.376 (0.517)	0.131 (0.271)	0.153 (0.297)	0.796 (0.855)	0.119 (0.258)	0.116 (0.255)
KIAA1462	22 (8%)	267	0.317 (0.462)	0.0656 (0.184)	0.349 (0.492)	0.167 (0.312)	0.217 (0.366)	0.079 (0.203)	0.0147 (0.081)	0.196 (0.342)	0.488 (0.612)	0.254 (0.4)
FAM82A1	4 (1%)	285	0.333 (0.477)		0.00316 (0.0344)	0.4 (0.541)	0.112 (0.248)	0.434 (0.567)	0.0899 (0.219)	0.814 (0.87)
KCTD21	7 (2%)	282	0.343 (0.487)	0.935 (0.972)	0.626 (0.719)	0.448 (0.579)	0.273 (0.419)	0.537 (0.652)	0.00753 (0.0564)	0.0682 (0.188)	0.0739 (0.196)	0.315 (0.46)
PHACTR1	9 (3%)	280	0.0559 (0.169)	0.349 (0.492)	0.747 (0.819)	0.0206 (0.0973)	0.124 (0.264)	0.129 (0.27)	0.185 (0.331)	0.471 (0.599)	0.82 (0.875)	0.773 (0.841)
STAU2	8 (3%)	281	0.456 (0.588)	0.694 (0.777)	0.0931 (0.224)	0.00114 (0.0196)	0.486 (0.611)	0.655 (0.745)	0.426 (0.561)	0.899 (0.94)	0.0887 (0.217)	0.743 (0.815)
KIAA1609	7 (2%)	282	0.0356 (0.133)	0.347 (0.491)	0.136 (0.279)	0.517 (0.635)	0.181 (0.327)	0.32 (0.464)	0.0667 (0.186)	0.231 (0.376)	0.571 (0.682)	0.474 (0.6)
ZMYM5	8 (3%)	281	0.195 (0.341)	0.19 (0.335)	0.0156 (0.0829)	0.0564 (0.17)	0.0686 (0.188)	0.613 (0.711)	0.151 (0.295)	0.168 (0.314)	0.811 (0.869)	0.295 (0.44)
C19ORF26	7 (2%)	282	0.0759 (0.198)	0.307 (0.452)	0.702 (0.784)	0.067 (0.186)	0.102 (0.237)	0.611 (0.709)	0.385 (0.524)	0.358 (0.5)	0.0353 (0.132)	0.562 (0.674)
DYX1C1	10 (3%)	279	0.187 (0.332)	0.104 (0.239)	0.328 (0.472)	0.0182 (0.0909)	0.498 (0.619)	0.125 (0.265)	0.51 (0.631)	0.57 (0.681)	0.67 (0.756)	0.837 (0.89)
NOB1	7 (2%)	282	0.171 (0.318)	0.0972 (0.23)	0.149 (0.294)	0.583 (0.69)	0.128 (0.268)	0.131 (0.272)	0.0538 (0.164)	0.354 (0.496)	0.0359 (0.133)	0.228 (0.375)
ELL2	12 (4%)	277	0.133 (0.274)	0.158 (0.304)	0.0978 (0.231)	0.112 (0.248)	0.0357 (0.133)	0.481 (0.606)	0.0618 (0.178)	0.379 (0.52)	0.809 (0.867)	0.21 (0.358)
ENOSF1	7 (2%)	282	0.493 (0.615)	0.406 (0.546)	0.347 (0.49)	0.0337 (0.128)	0.599 (0.702)	1 (1.00)	0.385 (0.524)	0.513 (0.632)	0.789 (0.852)	0.687 (0.771)
GPATCH4	8 (3%)	281	0.778 (0.844)	0.251 (0.397)	0.439 (0.571)	0.0767 (0.199)	0.155 (0.3)	0.376 (0.517)	0.059 (0.173)	0.384 (0.523)	0.0634 (0.181)	0.0222 (0.1)
ELOVL2	7 (2%)	282	1 (1.00)	0.32 (0.464)	0.241 (0.387)	0.0247 (0.105)	0.38 (0.522)	0.44 (0.571)	0.146 (0.291)	0.512 (0.632)	0.282 (0.426)	0.341 (0.486)
SMARCAL1	13 (4%)	276	0.49 (0.614)	0.00695 (0.0543)	0.869 (0.916)	0.0739 (0.196)	0.932 (0.969)	0.143 (0.289)	0.364 (0.506)	0.549 (0.662)	0.91 (0.95)	0.748 (0.819)
DMC1	8 (3%)	281	0.735 (0.808)	0.115 (0.253)	0.229 (0.375)	0.697 (0.779)	0.0756 (0.198)	1 (1.00)	0.663 (0.75)	0.165 (0.31)	0.62 (0.716)	0.00324 (0.0349)
DUSP9	5 (2%)	284	0.864 (0.912)	0.185 (0.331)	0.386 (0.525)	0.00905 (0.0631)	0.232 (0.377)	0.227 (0.375)	0.259 (0.404)	0.42 (0.558)
CBLN3	5 (2%)	284	0.127 (0.267)	0.382 (0.522)	0.372 (0.513)	0.223 (0.372)	0.115 (0.252)	0.0494 (0.156)	0.172 (0.318)	0.251 (0.397)	0.509 (0.63)	0.474 (0.6)
DUSP11	4 (1%)	285	0.472 (0.599)	0.15 (0.294)	0.428 (0.563)	0.0437 (0.147)	0.275 (0.421)	0.111 (0.248)	0.0894 (0.218)	0.418 (0.557)	0.367 (0.509)	0.602 (0.705)
TMEM79	6 (2%)	283	0.176 (0.321)	0.0135 (0.0773)	0.0838 (0.21)	0.0504 (0.158)	0.266 (0.412)	0.0751 (0.197)	0.146 (0.292)	0.118 (0.257)	0.0762 (0.198)	0.119 (0.258)
CEACAM3	7 (2%)	282	0.221 (0.371)	0.186 (0.332)	0.331 (0.476)	0.215 (0.364)	0.0287 (0.116)	0.267 (0.413)	0.0666 (0.186)	0.0692 (0.189)	0.62 (0.716)	0.11 (0.247)
NUPL2	7 (2%)	282	0.574 (0.684)	0.269 (0.415)	0.0734 (0.195)	0.217 (0.366)	0.109 (0.246)	0.267 (0.412)	0.0646 (0.183)	0.0675 (0.187)	0.192 (0.338)	0.0182 (0.0911)
NAA16	8 (3%)	281	0.236 (0.381)	0.35 (0.493)	0.343 (0.487)	0.0813 (0.207)	0.0648 (0.183)	0.431 (0.566)	0.0232 (0.102)	0.896 (0.938)	0.199 (0.346)	0.382 (0.523)
GALK1	4 (1%)	285	0.392 (0.532)		0.392 (0.532)	0.043 (0.146)	0.288 (0.432)	0.433 (0.567)	0.0897 (0.219)	0.421 (0.558)
CHGB	12 (4%)	277	0.661 (0.748)	0.101 (0.236)	0.0587 (0.173)	0.0144 (0.0801)	0.217 (0.366)	0.188 (0.333)	0.123 (0.263)	0.493 (0.615)	0.748 (0.819)	0.134 (0.276)
CNGA4	18 (6%)	271	0.474 (0.6)	0.346 (0.49)	0.392 (0.532)	0.0144 (0.0801)	0.0864 (0.213)	0.489 (0.613)	0.205 (0.354)	0.521 (0.637)	0.0996 (0.234)	0.331 (0.475)
PARP15	4 (1%)	285	0.471 (0.599)	0.535 (0.651)	0.162 (0.308)	0.289 (0.433)	0.0624 (0.179)	0.608 (0.707)	0.462 (0.593)	0.661 (0.748)	0.439 (0.571)	0.034 (0.129)
LCE1A	3 (1%)	286	0.117 (0.255)	0.772 (0.84)	0.594 (0.699)	0.255 (0.401)	0.818 (0.873)	1 (1.00)	0.109 (0.246)	0.0239 (0.103)	0.202 (0.35)	1 (1.00)
PRSS48	6 (2%)	283	0.0191 (0.0929)	0.11 (0.247)	0.0975 (0.23)	0.482 (0.608)	0.176 (0.321)	0.228 (0.375)	0.582 (0.689)	0.121 (0.259)	0.575 (0.685)	0.311 (0.456)
PPP1R13B	10 (3%)	279	0.198 (0.345)	0.305 (0.45)	0.0404 (0.142)	0.343 (0.487)	0.691 (0.774)	0.84 (0.892)	0.0819 (0.207)	0.691 (0.774)	0.353 (0.495)	0.117 (0.255)
NAA35	4 (1%)	285	0.6 (0.703)	0.152 (0.296)	0.68 (0.766)	0.00918 (0.0635)	0.124 (0.263)	0.435 (0.568)	0.465 (0.595)	0.42 (0.557)	0.59 (0.696)	0.607 (0.707)
HIST1H1A	5 (2%)	284	0.332 (0.477)	0.617 (0.714)	0.209 (0.358)	0.0402 (0.142)	0.304 (0.449)	0.114 (0.25)	0.533 (0.648)	0.251 (0.398)	1 (1.00)	0.485 (0.61)
ZBTB40	10 (3%)	279	0.434 (0.567)	0.0186 (0.092)	0.476 (0.601)	0.278 (0.423)	0.373 (0.515)	0.13 (0.27)	0.188 (0.334)	0.343 (0.487)	0.813 (0.87)	0.271 (0.417)
TRIM27	5 (2%)	284	0.148 (0.294)	0.0975 (0.23)	0.682 (0.767)	0.253 (0.399)	0.0515 (0.16)	0.228 (0.375)	0.0305 (0.12)	0.254 (0.4)	0.572 (0.683)	0.711 (0.789)
KYNU	10 (3%)	279	0.128 (0.268)	0.597 (0.701)	0.231 (0.377)	0.663 (0.75)	0.00536 (0.0467)	0.176 (0.321)	0.082 (0.207)	0.346 (0.489)	0.545 (0.659)	0.225 (0.373)
TRIP11	13 (4%)	276	0.413 (0.552)	0.437 (0.569)	0.019 (0.0927)	0.576 (0.685)	0.491 (0.614)	0.262 (0.407)	0.721 (0.795)	0.803 (0.861)	0.559 (0.672)	0.682 (0.768)
KIAA0586	10 (3%)	279	0.523 (0.639)	0.701 (0.783)	0.00708 (0.055)	0.345 (0.489)	0.338 (0.482)	0.332 (0.476)	0.0824 (0.208)	0.341 (0.485)	0.652 (0.743)	0.513 (0.632)
SLC23A3	5 (2%)	284	1 (1.00)	0.625 (0.719)	0.187 (0.333)	0.00738 (0.056)	0.719 (0.795)	0.537 (0.652)	0.261 (0.406)	0.251 (0.398)	0.223 (0.372)	0.709 (0.788)
KRT222	5 (2%)	284	0.389 (0.529)	0.857 (0.907)	0.583 (0.69)	0.22 (0.37)	0.709 (0.788)	0.0494 (0.156)	0.169 (0.315)	0.718 (0.795)	0.827 (0.881)	0.839 (0.891)
IKBKAP	13 (4%)	276	0.308 (0.452)	0.366 (0.508)	0.0775 (0.2)	0.455 (0.587)	0.00906 (0.0631)	0.314 (0.459)	0.0842 (0.211)	0.28 (0.425)	0.277 (0.423)	0.253 (0.399)
C10ORF120	5 (2%)	284	1 (1.00)	0.857 (0.907)	0.219 (0.369)	0.0092 (0.0635)			0.173 (0.318)	0.719 (0.795)
DGKD	6 (2%)	283	0.604 (0.706)	0.419 (0.557)	0.552 (0.664)	0.421 (0.558)	0.0236 (0.103)	0.433 (0.567)	0.668 (0.754)	1 (1.00)	0.226 (0.374)	0.534 (0.65)
STAT6	3 (1%)	286	0.543 (0.658)		0.39 (0.53)	0.0052 (0.0458)			0.472 (0.6)	0.422 (0.558)
DYRK1A	9 (3%)	280	0.194 (0.34)	0.161 (0.306)	0.413 (0.553)	0.183 (0.329)	0.229 (0.375)	0.265 (0.41)	0.021 (0.0982)	0.121 (0.26)	0.89 (0.932)	0.583 (0.689)
TXLNG	7 (2%)	282	0.179 (0.324)	0.0594 (0.174)	0.279 (0.423)	0.00047 (0.0114)	0.263 (0.409)	0.0766 (0.199)	0.0531 (0.163)	0.352 (0.495)	0.209 (0.358)	0.647 (0.738)
OR10J3	8 (3%)	281	0.175 (0.32)	0.35 (0.493)	0.00015 (0.00568)	0.383 (0.523)	0.314 (0.459)	0.374 (0.516)	0.197 (0.344)	0.341 (0.486)	0.393 (0.532)	0.734 (0.807)
SP100	15 (5%)	274	0.257 (0.403)	0.237 (0.383)	0.46 (0.59)	0.0207 (0.0976)	0.525 (0.64)	0.458 (0.589)	0.0602 (0.175)	0.399 (0.54)	0.334 (0.478)	0.115 (0.252)
TBC1D23	4 (1%)	285	0.107 (0.243)	0.691 (0.774)	0.303 (0.448)	0.0498 (0.157)	0.396 (0.536)	0.111 (0.247)	0.464 (0.595)	0.661 (0.748)	0.285 (0.429)	0.688 (0.771)
EHBP1	9 (3%)	280	0.147 (0.293)	1 (1.00)	0.435 (0.568)	0.104 (0.239)	0.0804 (0.205)	1 (1.00)	0.183 (0.329)	0.53 (0.646)	0.705 (0.786)	0.0422 (0.145)
PIK3C2G	10 (3%)	279	0.125 (0.265)	0.063 (0.18)	0.847 (0.898)	0.518 (0.635)	0.116 (0.254)	0.911 (0.951)	0.0452 (0.149)	0.0574 (0.171)	0.447 (0.578)	0.107 (0.243)
ARID3A	6 (2%)	283	0.195 (0.341)	0.0523 (0.161)	0.451 (0.582)	0.321 (0.465)	0.0645 (0.182)	0.267 (0.412)	0.016 (0.084)	0.12 (0.259)	0.718 (0.795)	0.49 (0.613)
SNRPA	8 (3%)	281	0.438 (0.57)	0.189 (0.334)	0.322 (0.466)	0.212 (0.361)	0.0207 (0.0976)	0.421 (0.558)	0.225 (0.373)	0.212 (0.36)	0.232 (0.377)	0.441 (0.572)
SRRT	12 (4%)	277	0.0546 (0.166)	0.0766 (0.199)	0.0817 (0.207)	0.484 (0.609)	0.401 (0.541)	0.405 (0.545)	0.038 (0.136)	0.173 (0.318)	0.401 (0.542)	0.358 (0.5)
FOXA3	7 (2%)	282	0.106 (0.241)	0.188 (0.334)	0.308 (0.453)	0.0217 (0.0993)	0.0647 (0.183)	0.267 (0.412)	0.0677 (0.187)	0.403 (0.543)	0.533 (0.648)	0.239 (0.385)
CCDC25	3 (1%)	286	0.393 (0.532)		0.258 (0.404)	0.00517 (0.0457)	0.397 (0.537)	0.112 (0.248)	0.185 (0.331)	0.423 (0.559)
SH3D19	3 (1%)	286	0.544 (0.659)		0.387 (0.527)	0.0441 (0.148)	0.0629 (0.18)	0.606 (0.707)	0.477 (0.602)	0.424 (0.559)
LRRC52	9 (3%)	280	0.413 (0.552)	0.109 (0.246)	0.596 (0.701)	0.598 (0.702)	0.0925 (0.222)	0.333 (0.477)	0.0782 (0.201)	0.475 (0.601)	0.766 (0.835)	0.029 (0.116)
TOX	9 (3%)	280	0.686 (0.77)	0.343 (0.487)	0.00654 (0.0525)	0.0829 (0.208)	0.842 (0.894)	0.184 (0.33)	0.838 (0.891)	0.597 (0.701)	0.901 (0.942)	0.777 (0.843)
FBXO34	7 (2%)	282	0.251 (0.397)	0.221 (0.371)	0.952 (0.987)	0.553 (0.665)	0.00262 (0.0319)	0.536 (0.652)	0.0654 (0.184)	0.231 (0.377)	0.158 (0.303)	0.287 (0.432)
APOA1BP	6 (2%)	283	0.608 (0.707)	0.532 (0.648)	0.561 (0.673)	0.01 (0.066)	0.338 (0.482)	0.754 (0.825)	0.335 (0.479)	0.412 (0.551)	0.761 (0.831)	0.172 (0.318)
PDE1B	6 (2%)	283	0.38 (0.521)	0.367 (0.509)	0.435 (0.568)	0.0198 (0.0949)	0.338 (0.482)	0.657 (0.746)	0.334 (0.478)	1 (1.00)	0.457 (0.588)	0.879 (0.924)
KRAS	28 (10%)	261	0.137 (0.28)	0.421 (0.558)	0.976 (1.00)	0.135 (0.277)	0.227 (0.375)	0.0546 (0.166)	0.143 (0.288)	0.202 (0.349)	0.796 (0.855)	0.578 (0.687)
PLAGL2	7 (2%)	282	0.605 (0.706)	0.838 (0.891)	0.375 (0.516)	0.204 (0.352)	0.709 (0.788)	0.657 (0.746)	1 (1.00)	0.777 (0.843)	0.487 (0.611)	0.969 (1.00)
RHOQ	5 (2%)	284	0.512 (0.631)	0.151 (0.295)	0.463 (0.593)	0.781 (0.847)	0.719 (0.795)	0.228 (0.375)	0.172 (0.318)	0.719 (0.795)	0.0996 (0.234)	0.0851 (0.212)
PLOD3	14 (5%)	275	0.0985 (0.232)	0.0912 (0.22)	0.0867 (0.214)	0.429 (0.563)	0.0824 (0.208)	0.334 (0.478)	0.219 (0.368)	0.533 (0.649)	0.582 (0.689)	0.29 (0.433)
FGGY	9 (3%)	280	0.649 (0.74)	0.42 (0.558)	0.173 (0.318)	0.091 (0.22)	0.203 (0.352)	0.142 (0.288)	0.0531 (0.163)	0.256 (0.402)	0.619 (0.716)	0.883 (0.927)
GBP7	9 (3%)	280	0.0691 (0.189)	0.229 (0.375)	0.18 (0.326)	0.16 (0.305)	0.355 (0.497)	0.157 (0.302)	0.205 (0.354)	0.532 (0.648)	0.879 (0.924)	0.526 (0.642)
MAP7D1	12 (4%)	277	0.326 (0.471)	0.242 (0.388)	0.0721 (0.192)	0.45 (0.581)	0.0567 (0.17)	0.48 (0.606)	0.492 (0.614)	0.788 (0.852)	0.882 (0.927)	0.466 (0.596)
CR1L	12 (4%)	277	0.152 (0.296)	0.415 (0.555)	0.62 (0.716)	0.661 (0.748)	0.609 (0.708)	0.745 (0.817)	0.0957 (0.228)	0.789 (0.852)	0.201 (0.348)	0.19 (0.335)
OGDH	9 (3%)	280	0.214 (0.363)	0.28 (0.425)	0.567 (0.678)	0.0691 (0.189)	0.56 (0.672)	0.142 (0.288)	0.151 (0.295)	0.254 (0.4)	0.282 (0.426)	0.164 (0.31)
CDKN2A	12 (4%)	277	0.747 (0.819)	0.623 (0.718)	0.405 (0.545)	0.365 (0.507)	0.497 (0.619)	0.485 (0.61)	0.0614 (0.177)	0.577 (0.686)	0.12 (0.259)	0.731 (0.804)
GALNTL1	10 (3%)	279	0.236 (0.382)	0.613 (0.711)	0.936 (0.972)	0.278 (0.423)	0.801 (0.86)	1 (1.00)	0.382 (0.523)	0.574 (0.684)	0.964 (0.998)	0.963 (0.997)
CFI	12 (4%)	277	0.0702 (0.19)	0.159 (0.304)	0.872 (0.918)	0.274 (0.42)	0.0862 (0.213)	0.102 (0.237)	0.6 (0.703)	0.172 (0.318)	0.367 (0.509)	0.626 (0.719)
FAM46D	9 (3%)	280	0.43 (0.565)	0.389 (0.528)	0.0774 (0.2)	0.686 (0.771)	0.134 (0.276)	0.68 (0.765)	0.908 (0.948)	0.598 (0.702)	0.372 (0.514)	0.631 (0.723)
FKBP9	6 (2%)	283	0.107 (0.243)	0.0608 (0.176)	0.441 (0.572)	0.124 (0.264)	0.157 (0.302)	0.869 (0.916)	1 (1.00)	0.354 (0.496)	0.575 (0.684)	0.161 (0.307)
IGFBP7	4 (1%)	285	0.544 (0.659)	0.148 (0.294)			0.0634 (0.181)	0.111 (0.248)	0.0889 (0.218)	0.42 (0.558)	0.823 (0.878)	0.605 (0.706)
PRKAB1	6 (2%)	283	0.812 (0.869)	0.58 (0.688)	0.673 (0.759)	0.493 (0.615)	0.936 (0.972)	0.731 (0.804)	0.767 (0.836)	0.86 (0.909)	0.589 (0.695)	0.213 (0.361)
ZIM3	10 (3%)	279	0.557 (0.669)	0.58 (0.688)	0.138 (0.281)	0.519 (0.636)	0.916 (0.954)	0.563 (0.674)	0.274 (0.42)	0.691 (0.774)	0.197 (0.343)	0.26 (0.405)
SLC16A1	7 (2%)	282	0.574 (0.684)	0.936 (0.972)	0.168 (0.313)	0.486 (0.61)	0.275 (0.421)	0.132 (0.273)	0.0528 (0.162)	0.514 (0.632)	0.622 (0.717)	0.487 (0.611)
ERBB2	14 (5%)	275	0.762 (0.831)	0.421 (0.558)	0.832 (0.886)	0.922 (0.96)	0.222 (0.372)	0.207 (0.357)	0.105 (0.24)	0.181 (0.327)	0.61 (0.709)	0.568 (0.679)
CYP27B1	5 (2%)	284	0.513 (0.632)	0.653 (0.743)	0.952 (0.987)	0.0835 (0.21)	0.707 (0.787)	0.436 (0.568)	0.534 (0.65)	1 (1.00)	0.0714 (0.192)	0.878 (0.924)
PODN	13 (4%)	276	0.327 (0.472)	0.294 (0.439)	0.887 (0.93)	0.553 (0.665)	0.16 (0.305)	0.112 (0.249)	0.138 (0.282)	0.114 (0.25)	0.312 (0.457)	0.411 (0.551)
CASC3	8 (3%)	281	0.617 (0.714)	0.344 (0.488)	0.385 (0.524)	0.173 (0.318)	0.939 (0.975)	0.702 (0.784)	1 (1.00)	0.895 (0.937)	0.475 (0.601)	0.191 (0.336)
PANK1	8 (3%)	281	0.113 (0.249)	0.149 (0.294)	0.687 (0.771)	0.228 (0.375)	0.173 (0.318)	0.812 (0.869)	0.152 (0.296)	0.798 (0.857)	0.426 (0.561)	0.581 (0.688)
IDH2	4 (1%)	285	0.199 (0.346)	0.534 (0.65)	0.643 (0.735)	0.305 (0.45)	0.347 (0.491)	0.685 (0.77)	0.366 (0.508)	0.66 (0.748)	0.327 (0.472)	0.84 (0.892)
PIK3R3	8 (3%)	281	0.0781 (0.201)	0.189 (0.334)	1 (1.00)	0.95 (0.986)	0.0553 (0.167)	0.698 (0.78)	0.662 (0.749)	0.165 (0.31)	0.419 (0.557)	0.274 (0.42)
DAO	11 (4%)	278	0.513 (0.632)	0.0852 (0.212)	0.256 (0.402)	0.213 (0.362)	0.433 (0.567)	0.189 (0.334)	0.791 (0.853)	0.465 (0.595)	0.241 (0.388)	0.707 (0.787)
VEZF1	5 (2%)	284	0.299 (0.444)	0.346 (0.489)	0.0515 (0.16)	0.0602 (0.175)	0.798 (0.857)	0.54 (0.654)	0.311 (0.456)	0.722 (0.796)	0.933 (0.97)	1 (1.00)
CETN3	7 (2%)	282	0.249 (0.396)	0.109 (0.246)	0.733 (0.806)	0.0691 (0.189)	0.72 (0.795)	0.538 (0.653)	0.0667 (0.186)	0.229 (0.375)	0.15 (0.295)	0.489 (0.612)
ZNF23	3 (1%)	286					0.626 (0.719)	0.325 (0.469)	0.79 (0.853)	0.789 (0.852)
C1QA	5 (2%)	284	0.301 (0.446)	0.35 (0.493)	0.0871 (0.214)	0.0645 (0.182)	0.104 (0.239)	0.436 (0.569)	0.313 (0.458)	0.33 (0.474)	0.719 (0.795)	0.318 (0.463)
TBL1XR1	6 (2%)	283	0.458 (0.589)	0.225 (0.373)	0.192 (0.338)	0.491 (0.614)	0.698 (0.78)	0.323 (0.467)	0.145 (0.29)	0.355 (0.497)	0.825 (0.88)	0.603 (0.705)
KDELR3	3 (1%)	286	1 (1.00)	0.698 (0.78)	0.318 (0.463)	0.208 (0.357)			0.476 (0.602)	1 (1.00)	0.656 (0.746)	0.183 (0.33)
CTSA	4 (1%)	285	0.205 (0.354)	0.344 (0.488)	1 (1.00)	1 (1.00)	0.247 (0.394)	0.837 (0.89)	0.462 (0.592)	0.33 (0.474)	0.934 (0.97)	1 (1.00)
RRS1	7 (2%)	282	0.577 (0.685)	0.448 (0.579)	0.348 (0.491)	0.415 (0.554)	0.0759 (0.198)	0.157 (0.302)	0.797 (0.857)	0.0693 (0.189)	0.323 (0.467)	0.231 (0.377)
ZNF626	15 (5%)	274	0.397 (0.538)	0.157 (0.302)	0.653 (0.743)	0.188 (0.333)	0.607 (0.707)	0.407 (0.546)	0.944 (0.98)	0.6 (0.703)	0.674 (0.759)	0.193 (0.339)
TAS2R42	4 (1%)	285	0.811 (0.869)	0.0553 (0.168)	0.505 (0.626)	1 (1.00)	0.303 (0.448)	0.802 (0.86)	0.289 (0.433)	0.521 (0.637)	0.326 (0.47)	0.606 (0.707)
ENTPD2	4 (1%)	285	0.198 (0.346)	0.225 (0.373)	0.759 (0.829)	0.0852 (0.212)	0.71 (0.789)	0.838 (0.891)	0.365 (0.507)	0.815 (0.871)
SOAT1	6 (2%)	283	0.408 (0.548)	0.0595 (0.174)	0.547 (0.66)	0.162 (0.308)	0.149 (0.294)	0.23 (0.376)	0.145 (0.291)	0.121 (0.26)	0.165 (0.31)	0.225 (0.373)
GNPNAT1	4 (1%)	285	0.601 (0.704)	0.617 (0.714)	0.469 (0.598)	0.913 (0.952)	0.276 (0.422)	0.804 (0.862)	0.465 (0.595)	0.661 (0.748)	0.777 (0.843)	0.142 (0.287)
MSL3	10 (3%)	279	0.238 (0.384)	0.114 (0.252)	0.922 (0.96)	0.747 (0.819)	0.112 (0.249)	0.909 (0.949)	0.0993 (0.233)	0.159 (0.304)	0.701 (0.783)	0.683 (0.768)
CBLL1	6 (2%)	283	0.393 (0.533)	0.627 (0.72)	0.272 (0.417)	0.444 (0.574)	0.596 (0.701)	0.872 (0.919)	0.444 (0.575)	0.741 (0.814)	0.621 (0.717)	0.841 (0.892)
TMEM55A	3 (1%)	286	0.632 (0.724)		0.761 (0.83)	0.208 (0.357)	0.625 (0.719)	0.325 (0.47)	0.792 (0.854)	0.788 (0.852)
YBX2	4 (1%)	285	0.602 (0.705)	0.15 (0.295)	0.524 (0.639)	0.758 (0.829)	0.274 (0.421)	0.111 (0.248)	0.0912 (0.22)	0.419 (0.557)	0.0577 (0.171)	0.0844 (0.211)
PIAS1	10 (3%)	279	0.349 (0.492)	0.527 (0.643)	0.153 (0.297)	0.0537 (0.164)	0.0816 (0.207)	0.304 (0.449)	0.0829 (0.208)	0.627 (0.72)	0.115 (0.253)	0.129 (0.269)
NUFIP2	7 (2%)	282	0.058 (0.172)	0.218 (0.367)	0.118 (0.256)	0.515 (0.633)	0.522 (0.638)	0.319 (0.464)	0.795 (0.855)	0.778 (0.844)	0.814 (0.87)	0.233 (0.378)
C11ORF9	8 (3%)	281	0.194 (0.34)	0.189 (0.334)	0.37 (0.512)	0.164 (0.309)	0.261 (0.407)	0.646 (0.738)	0.153 (0.297)	0.168 (0.313)	0.981 (1.00)	0.224 (0.373)
TPTE2	10 (3%)	279	0.695 (0.777)	0.554 (0.666)	0.251 (0.397)	0.873 (0.919)	0.0773 (0.2)	0.754 (0.826)	0.772 (0.84)	0.176 (0.32)	0.113 (0.249)	0.627 (0.72)
ANKRD23	5 (2%)	284	0.797 (0.857)	0.38 (0.521)	0.53 (0.646)	0.552 (0.664)	0.951 (0.986)	0.837 (0.89)	1 (1.00)	0.615 (0.713)	0.513 (0.632)	0.773 (0.841)
HEXDC	5 (2%)	284	0.298 (0.443)	0.279 (0.424)	0.0917 (0.221)	0.25 (0.397)	0.381 (0.522)	0.159 (0.304)	0.311 (0.456)	0.514 (0.632)	0.433 (0.567)	0.397 (0.538)
MGST2	3 (1%)	286	0.545 (0.659)	0.0682 (0.188)			0.0636 (0.181)	0.111 (0.248)	0.184 (0.33)	0.423 (0.559)
TMEM41B	4 (1%)	285	0.603 (0.705)	0.857 (0.907)	0.524 (0.64)	0.0505 (0.158)			0.363 (0.506)	0.813 (0.87)	0.826 (0.881)	0.608 (0.707)
ARHGEF5	5 (2%)	284	0.299 (0.444)	0.225 (0.373)	0.868 (0.916)	0.519 (0.636)	0.72 (0.795)	0.633 (0.725)	0.312 (0.456)	0.515 (0.633)
BEST3	10 (3%)	279	0.506 (0.628)	0.703 (0.784)	0.441 (0.572)	0.261 (0.406)	0.471 (0.599)	0.612 (0.71)	0.606 (0.707)	1 (1.00)	0.645 (0.737)	0.677 (0.763)
ANKRD40	5 (2%)	284	0.457 (0.588)	0.533 (0.648)	0.26 (0.405)	0.149 (0.294)	0.0987 (0.232)	0.634 (0.726)	0.315 (0.46)	0.512 (0.632)	0.277 (0.423)	0.546 (0.66)
OLFML3	4 (1%)	285	0.473 (0.6)	0.617 (0.714)	0.503 (0.625)	0.209 (0.358)			0.09 (0.219)	0.422 (0.558)
SPHK2	3 (1%)	286	0.543 (0.657)						0.186 (0.332)	0.423 (0.559)
FOXQ1	3 (1%)	286	0.543 (0.658)				0.304 (0.449)	0.111 (0.248)	0.186 (0.331)	1 (1.00)
MOCS2	4 (1%)	285	0.275 (0.421)		0.883 (0.927)	0.913 (0.952)	0.71 (0.789)	0.683 (0.768)	0.0904 (0.219)	0.418 (0.557)
WDR59	11 (4%)	278	0.378 (0.519)	0.203 (0.352)	0.0836 (0.21)	0.0815 (0.207)	0.325 (0.469)	0.0654 (0.184)	0.12 (0.259)	0.601 (0.704)	0.402 (0.542)	0.448 (0.579)
UNC50	3 (1%)	286					0.0622 (0.179)	0.108 (0.245)	0.185 (0.331)	0.423 (0.559)
SLC25A17	4 (1%)	285	0.104 (0.239)		0.387 (0.526)	0.758 (0.828)	0.15 (0.295)	0.159 (0.304)	0.467 (0.597)	0.814 (0.87)
DDX43	10 (3%)	279	0.186 (0.332)	0.363 (0.506)	0.0621 (0.179)	0.229 (0.375)	0.843 (0.894)	0.828 (0.882)	0.188 (0.334)	0.691 (0.774)	0.384 (0.523)	0.656 (0.746)
KRT24	5 (2%)	284	0.577 (0.685)	0.269 (0.415)	0.68 (0.766)	0.286 (0.431)	0.349 (0.492)	0.0506 (0.158)	0.173 (0.319)	0.719 (0.795)	0.66 (0.748)	0.77 (0.838)
HEPACAM2	8 (3%)	281	0.0848 (0.211)	0.65 (0.741)	0.858 (0.907)	0.426 (0.561)	0.0766 (0.199)	0.294 (0.438)	0.278 (0.423)	0.167 (0.312)	0.929 (0.966)	0.305 (0.45)
EVL	7 (2%)	282	0.0762 (0.198)	0.281 (0.425)	0.0707 (0.191)	0.229 (0.375)	0.203 (0.352)	0.757 (0.828)	0.794 (0.855)	0.23 (0.376)	0.432 (0.566)	0.687 (0.771)
FAM92B	3 (1%)	286	0.265 (0.41)	0.694 (0.777)			0.923 (0.961)	0.608 (0.707)	0.475 (0.6)	1 (1.00)
HCRTR2	9 (3%)	280	0.453 (0.584)	0.215 (0.363)	0.196 (0.343)	0.199 (0.346)	0.37 (0.512)	0.828 (0.882)	0.47 (0.599)	0.474 (0.6)	0.323 (0.467)	0.111 (0.248)
TAS2R10	3 (1%)	286	0.631 (0.724)	0.149 (0.294)			0.105 (0.241)	0.113 (0.249)	0.184 (0.331)	0.424 (0.56)
PTPDC1	8 (3%)	281	0.933 (0.97)	1 (1.00)	0.137 (0.28)	0.209 (0.358)	0.57 (0.681)	0.0762 (0.198)	0.426 (0.561)	0.707 (0.787)	0.473 (0.6)	0.224 (0.373)
TMEM92	3 (1%)	286	1 (1.00)						0.473 (0.6)	1 (1.00)
OR51A7	6 (2%)	283	0.776 (0.843)	0.529 (0.645)	0.117 (0.256)	0.688 (0.772)	0.601 (0.704)	0.508 (0.629)	1 (1.00)	0.863 (0.911)	0.981 (1.00)	0.402 (0.542)
UPK2	3 (1%)	286	0.542 (0.657)		0.429 (0.563)	0.591 (0.696)			0.185 (0.331)	0.422 (0.558)
KRTAP10-9	9 (3%)	280	0.164 (0.31)	0.238 (0.384)	0.323 (0.467)	0.211 (0.359)	0.0546 (0.166)	0.156 (0.302)	0.0785 (0.202)	0.2 (0.348)	0.899 (0.941)	0.778 (0.844)
LYSMD3	10 (3%)	279	0.186 (0.331)	0.0678 (0.187)	0.179 (0.324)	0.639 (0.731)	0.181 (0.327)	0.145 (0.29)	0.271 (0.417)	0.346 (0.49)	0.891 (0.933)	0.977 (1.00)
KCTD9	10 (3%)	279	0.137 (0.28)	0.406 (0.546)	0.849 (0.9)	0.517 (0.635)	0.173 (0.319)	0.334 (0.478)	0.271 (0.417)	0.141 (0.286)	0.358 (0.5)	0.113 (0.249)
MTMR11	8 (3%)	281	1 (1.00)	0.254 (0.4)	0.803 (0.861)	0.137 (0.28)	0.953 (0.988)	0.0776 (0.2)	0.427 (0.562)	0.343 (0.487)	0.546 (0.66)	0.204 (0.352)
TNS4	12 (4%)	277	0.134 (0.277)	0.496 (0.617)	0.104 (0.239)	0.186 (0.332)	0.082 (0.207)	0.743 (0.815)	0.242 (0.388)	0.789 (0.852)	0.81 (0.868)	0.325 (0.469)
FOLH1	11 (4%)	278	0.385 (0.524)	0.496 (0.617)	0.287 (0.431)	0.276 (0.422)	0.908 (0.948)	0.613 (0.711)	1 (1.00)	0.845 (0.896)	0.39 (0.529)	0.467 (0.597)
SIK1	5 (2%)	284	0.299 (0.444)	0.348 (0.491)	0.184 (0.33)	0.489 (0.613)	0.721 (0.795)	0.633 (0.725)	0.313 (0.458)	0.516 (0.633)	0.887 (0.931)	0.949 (0.984)
ZDHHC5	10 (3%)	279	0.413 (0.552)	0.901 (0.942)	0.17 (0.316)	0.0904 (0.219)	0.317 (0.462)	0.143 (0.289)	0.188 (0.334)	0.911 (0.95)	0.702 (0.783)	0.411 (0.551)
ZNF367	4 (1%)	285	0.334 (0.478)	0.149 (0.294)	0.521 (0.637)	0.0506 (0.158)	0.607 (0.707)	0.161 (0.306)	0.465 (0.595)	0.658 (0.746)	0.432 (0.566)	0.686 (0.77)
MDM2	5 (2%)	284	0.507 (0.628)	0.493 (0.615)	0.869 (0.916)	0.104 (0.239)	0.769 (0.837)	0.326 (0.47)	0.313 (0.458)	0.51 (0.631)
SCN10A	28 (10%)	261	0.266 (0.412)	0.51 (0.63)	0.561 (0.673)	0.62 (0.716)	0.241 (0.388)	0.412 (0.551)	0.0896 (0.219)	0.965 (0.999)	0.42 (0.558)	0.597 (0.701)
SERPINA1	7 (2%)	282	0.18 (0.326)	1 (1.00)	0.73 (0.803)	0.198 (0.346)	0.0792 (0.203)	0.381 (0.522)	0.798 (0.857)	0.399 (0.539)	1 (1.00)	0.606 (0.707)
SLC7A10	5 (2%)	284	0.473 (0.6)	0.109 (0.246)	0.162 (0.307)	0.758 (0.829)	0.174 (0.32)	0.632 (0.725)	0.852 (0.903)	0.252 (0.399)	0.324 (0.468)	0.645 (0.737)
RGS2	3 (1%)	286	0.631 (0.724)		0.289 (0.433)	0.208 (0.357)	0.924 (0.961)	0.608 (0.707)	0.79 (0.853)	1 (1.00)
NRAS	3 (1%)	286	1 (1.00)	0.119 (0.258)	0.463 (0.593)	0.89 (0.932)			0.789 (0.852)	0.788 (0.852)
NBN	13 (4%)	276	0.244 (0.39)	0.195 (0.341)	0.925 (0.963)	0.452 (0.583)	0.718 (0.795)	0.347 (0.49)	0.444 (0.575)	0.864 (0.912)	0.16 (0.305)	0.687 (0.771)
ZBTB49	7 (2%)	282	0.788 (0.852)	0.488 (0.612)	0.383 (0.523)	0.599 (0.702)	0.172 (0.318)	0.13 (0.27)	0.795 (0.855)	0.512 (0.632)	0.9 (0.942)	0.199 (0.346)
IK	6 (2%)	283	0.576 (0.685)	1 (1.00)	0.0926 (0.223)	0.205 (0.354)	1 (1.00)	0.869 (0.916)	0.674 (0.759)	0.196 (0.342)	0.589 (0.695)	0.631 (0.723)
SLFN12	7 (2%)	282	0.491 (0.614)	0.507 (0.628)	0.0717 (0.192)	0.106 (0.241)	0.1 (0.235)	1 (1.00)	0.384 (0.523)	0.231 (0.376)	0.902 (0.943)	0.222 (0.372)
PNMT	8 (3%)	281	0.664 (0.75)	0.896 (0.938)	0.6 (0.703)	0.792 (0.854)	0.763 (0.832)	0.421 (0.558)	0.224 (0.372)	0.705 (0.786)	0.717 (0.794)	0.343 (0.487)
MAP2K1	5 (2%)	284	0.329 (0.473)	0.936 (0.972)	0.483 (0.608)	0.552 (0.664)	0.0508 (0.158)	1 (1.00)	0.312 (0.457)	0.328 (0.472)	0.786 (0.852)	0.114 (0.25)
SCAMP2	6 (2%)	283	0.196 (0.343)	0.0966 (0.229)	0.128 (0.268)	0.0817 (0.207)	0.205 (0.354)	0.0712 (0.192)	0.335 (0.479)	0.119 (0.258)	0.467 (0.597)	0.124 (0.264)
CD1E	7 (2%)	282	0.708 (0.788)	0.814 (0.87)	0.0814 (0.207)	0.865 (0.913)	0.472 (0.599)	0.886 (0.93)	0.621 (0.716)	0.582 (0.689)	0.147 (0.293)	0.172 (0.318)
EEF2K	9 (3%)	280	0.648 (0.739)	1 (1.00)	0.517 (0.634)	0.262 (0.407)	0.512 (0.632)	0.37 (0.512)	0.259 (0.404)	0.473 (0.6)	0.422 (0.558)	0.877 (0.923)
FAAH	4 (1%)	285	0.474 (0.6)	0.541 (0.656)	0.928 (0.966)	0.172 (0.318)	0.544 (0.659)	1 (1.00)	0.684 (0.769)	1 (1.00)
BTNL8	6 (2%)	283	0.942 (0.978)	0.758 (0.829)	0.129 (0.269)	0.722 (0.795)	0.0932 (0.224)	0.658 (0.746)	0.172 (0.318)	0.861 (0.91)	0.958 (0.993)	0.566 (0.677)
IGSF21	3 (1%)	286	0.396 (0.536)	0.619 (0.716)			0.303 (0.448)	0.607 (0.707)	0.185 (0.331)	0.787 (0.852)	0.369 (0.511)	0.364 (0.507)
IFNA17	4 (1%)	285	1 (1.00)	0.474 (0.6)	0.0681 (0.188)	0.4 (0.541)	0.709 (0.788)	0.434 (0.567)	0.362 (0.504)	0.52 (0.637)	0.875 (0.921)	0.88 (0.925)
LINGO4	10 (3%)	279	0.871 (0.918)	0.0685 (0.188)	0.94 (0.976)	0.342 (0.487)	0.564 (0.675)	0.715 (0.792)	0.0821 (0.207)	0.345 (0.489)	0.89 (0.932)	0.585 (0.691)
KIRREL	14 (5%)	275	0.278 (0.423)	0.0824 (0.208)	0.814 (0.87)	0.544 (0.659)	0.257 (0.402)	0.482 (0.608)	0.572 (0.683)	0.873 (0.919)	0.179 (0.325)	0.0615 (0.177)
KIF2B	27 (9%)	262	0.98 (1.00)	0.653 (0.743)	0.487 (0.611)	0.348 (0.491)	0.256 (0.402)	0.503 (0.625)	0.456 (0.587)	0.107 (0.243)	0.339 (0.483)	0.971 (1.00)
WWC1	14 (5%)	275	0.449 (0.579)	0.241 (0.388)	0.61 (0.709)	0.354 (0.496)	0.229 (0.375)	0.816 (0.872)	0.573 (0.683)	0.536 (0.651)	0.219 (0.369)	0.131 (0.273)
OSTALPHA	3 (1%)	286	0.543 (0.658)	0.618 (0.715)	0.507 (0.628)	0.0642 (0.182)	0.275 (0.421)	1 (1.00)	0.79 (0.853)	0.788 (0.852)	0.825 (0.88)	0.29 (0.434)
PPARG	4 (1%)	285	0.201 (0.348)		0.389 (0.528)	0.594 (0.7)	0.349 (0.492)	0.434 (0.567)	0.0909 (0.22)	0.418 (0.557)
MAPK15	7 (2%)	282	0.17 (0.317)	0.148 (0.293)	0.194 (0.34)	0.839 (0.891)	0.182 (0.328)	0.104 (0.239)	0.382 (0.523)	0.777 (0.843)	0.588 (0.694)	0.839 (0.891)
CCDC27	6 (2%)	283	0.575 (0.685)	0.308 (0.453)	0.181 (0.327)	0.471 (0.599)	0.516 (0.633)	0.44 (0.571)	0.334 (0.478)	1 (1.00)	0.889 (0.932)	0.795 (0.855)
THYN1	8 (3%)	281	0.495 (0.617)	0.237 (0.383)	0.262 (0.407)	0.499 (0.621)	0.521 (0.637)	0.269 (0.415)	0.224 (0.372)	0.707 (0.787)	0.55 (0.663)	0.545 (0.659)
KIF6	7 (2%)	282	0.221 (0.371)	0.424 (0.559)	0.0523 (0.161)	0.568 (0.68)	0.174 (0.32)	0.7 (0.781)	0.338 (0.482)	0.157 (0.302)	0.782 (0.847)	0.878 (0.924)
MAGEE2	8 (3%)	281	0.0642 (0.182)	0.0913 (0.22)	0.695 (0.777)	0.852 (0.903)	0.366 (0.508)	0.0714 (0.192)	0.278 (0.423)	0.704 (0.784)	0.71 (0.789)	0.873 (0.919)
MBL2	4 (1%)	285	0.471 (0.599)	0.621 (0.716)			0.106 (0.241)	0.434 (0.567)	0.0901 (0.219)	0.659 (0.747)	0.588 (0.694)	0.607 (0.707)
SLC6A11	7 (2%)	282	0.574 (0.684)	0.19 (0.335)	0.162 (0.308)	0.209 (0.358)	0.205 (0.354)	0.441 (0.572)	0.0647 (0.183)	0.0704 (0.19)	0.16 (0.305)	0.0804 (0.205)
CD3EAP	7 (2%)	282	0.0758 (0.198)	0.279 (0.424)	0.521 (0.637)	0.259 (0.404)	0.184 (0.33)	0.319 (0.464)	0.38 (0.521)	0.228 (0.375)	0.573 (0.683)	0.498 (0.619)
NMNAT1	3 (1%)	286	0.54 (0.654)				0.398 (0.539)	0.111 (0.247)	0.185 (0.331)	0.424 (0.559)
P2RX1	3 (1%)	286	0.543 (0.658)	0.15 (0.295)					1 (1.00)	0.788 (0.852)	0.59 (0.696)	0.604 (0.706)
TIMP3	6 (2%)	283	0.472 (0.599)	0.421 (0.558)	0.302 (0.447)	0.223 (0.372)	0.699 (0.78)	0.657 (0.746)	0.673 (0.759)	0.629 (0.722)	0.169 (0.315)	0.606 (0.707)
CDX2	3 (1%)	286	0.634 (0.726)		0.913 (0.952)	0.0865 (0.213)	0.626 (0.719)	0.799 (0.858)	0.184 (0.331)	0.421 (0.558)
BCL2L14	3 (1%)	286	1 (1.00)		0.641 (0.733)	0.303 (0.448)	0.106 (0.241)	0.321 (0.466)	0.791 (0.853)	0.79 (0.853)
SMAD7	5 (2%)	284	1 (1.00)	0.855 (0.906)	0.796 (0.855)	0.149 (0.294)	0.853 (0.903)	0.732 (0.805)	0.172 (0.318)	0.72 (0.795)	0.0595 (0.174)	0.485 (0.61)
AFP	3 (1%)	286	0.546 (0.66)		0.428 (0.563)	0.598 (0.702)			0.614 (0.711)	0.788 (0.852)
CASP1	4 (1%)	285	0.81 (0.868)	0.629 (0.722)	0.208 (0.357)	0.322 (0.466)	0.609 (0.708)	0.681 (0.766)	0.366 (0.508)	0.812 (0.869)	0.44 (0.571)	0.774 (0.841)
TAC4	3 (1%)	286	0.632 (0.724)	0.617 (0.714)			0.276 (0.422)	0.611 (0.71)	0.187 (0.332)	0.79 (0.853)
PFAS	9 (3%)	280	0.165 (0.31)	0.333 (0.478)	0.103 (0.238)	0.601 (0.704)	0.113 (0.249)	0.613 (0.711)	0.471 (0.599)	0.475 (0.6)	1 (1.00)	0.651 (0.742)
STK36	10 (3%)	279	0.451 (0.582)	0.873 (0.919)	0.784 (0.85)	0.214 (0.363)	0.178 (0.324)	0.839 (0.891)	0.271 (0.417)	0.212 (0.36)	0.521 (0.637)	0.14 (0.285)
PGBD2	3 (1%)	286	0.206 (0.355)		0.0868 (0.214)	0.209 (0.358)			0.478 (0.603)	0.422 (0.558)
BRMS1	6 (2%)	283	0.575 (0.685)	0.419 (0.557)	0.832 (0.886)	0.305 (0.449)	0.711 (0.789)	0.319 (0.464)	0.575 (0.685)	1 (1.00)	0.0894 (0.218)	0.705 (0.786)
SPTLC3	12 (4%)	277	0.795 (0.855)	0.922 (0.96)	0.179 (0.325)	0.0689 (0.189)	0.476 (0.602)	0.0657 (0.184)	0.175 (0.32)	0.728 (0.802)	0.0947 (0.226)	0.198 (0.345)
WNT9A	8 (3%)	281	0.29 (0.434)	0.134 (0.276)	0.847 (0.898)	0.887 (0.93)	0.267 (0.412)	0.419 (0.557)	0.427 (0.562)	0.703 (0.784)	0.231 (0.376)	0.563 (0.675)
C10ORF54	3 (1%)	286	0.265 (0.411)		0.32 (0.465)	0.595 (0.7)	0.767 (0.836)	0.608 (0.707)	1 (1.00)	0.422 (0.558)
PA2G4	4 (1%)	285	0.469 (0.598)	0.617 (0.714)	0.13 (0.27)	0.288 (0.433)	0.301 (0.446)	0.607 (0.707)	0.685 (0.769)	0.658 (0.746)	0.776 (0.843)	0.0749 (0.197)
BCKDHA	9 (3%)	280	0.453 (0.584)	0.487 (0.611)	0.295 (0.44)	0.518 (0.635)	0.634 (0.726)	0.614 (0.711)	0.256 (0.402)	0.28 (0.424)	0.222 (0.372)	0.736 (0.809)
GIPC3	6 (2%)	283	0.297 (0.442)	0.188 (0.334)	0.085 (0.212)	0.913 (0.952)	0.337 (0.481)	0.382 (0.522)	0.579 (0.687)	0.742 (0.814)	0.467 (0.597)	0.776 (0.843)
C14ORF102	14 (5%)	275	0.118 (0.257)	0.158 (0.303)	0.475 (0.601)	0.117 (0.256)	0.171 (0.318)	0.0717 (0.192)	0.0984 (0.232)	0.0731 (0.195)	0.268 (0.413)	0.293 (0.438)

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S1. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TP53 MUTATED	61	28	17	24	6
TP53 WILD-TYPE	18	98	10	19	6

Figure S1. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S2. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TP53 MUTATED	53	38	7	22
TP53 WILD-TYPE	18	38	27	41

Figure S2. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.42

Table S3. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TP53 MUTATED	9	36	23	26	24
TP53 WILD-TYPE	7	26	28	39	31

'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.76

Table S4. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TP53 MUTATED	49	21	25	23
TP53 WILD-TYPE	49	23	25	34

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S5. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TP53 MUTATED	24	16	15	19	44
TP53 WILD-TYPE	38	43	25	18	15

Figure S3. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0469 (Fisher's exact test), Q value = 0.15

Table S6. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TP53 MUTATED	55	17	46
TP53 WILD-TYPE	51	37	51

Figure S4. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S7. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TP53 MUTATED	54	34	50
TP53 WILD-TYPE	69	61	21

Figure S5. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S8. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TP53 MUTATED	65	21	52
TP53 WILD-TYPE	92	42	17

Figure S6. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S9. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TP53 MUTATED	23	7	28	20	9	19
TP53 WILD-TYPE	10	12	31	19	7	26

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0057

Table S10. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TP53 MUTATED	30	12	12	20	7	25
TP53 WILD-TYPE	17	27	23	12	16	10

Figure S7. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S11. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARID1A MUTATED	3	64	8	11	3
ARID1A WILD-TYPE	76	62	19	32	9

Figure S8. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S12. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARID1A MUTATED	8	34	20	12
ARID1A WILD-TYPE	63	42	14	51

Figure S9. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.12

Table S13. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ARID1A MUTATED	3	27	16	12	19
ARID1A WILD-TYPE	13	35	35	53	36

Figure S10. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0042

Table S14. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ARID1A MUTATED	20	25	19	13
ARID1A WILD-TYPE	78	19	31	44

Figure S11. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S15. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ARID1A MUTATED	38	19	12	9	4
ARID1A WILD-TYPE	24	40	28	28	55

Figure S12. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00323 (Fisher's exact test), Q value = 0.035

Table S16. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ARID1A MUTATED	28	11	43
ARID1A WILD-TYPE	78	43	54

Figure S13. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S17. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ARID1A MUTATED	58	22	10
ARID1A WILD-TYPE	65	73	61

Figure S14. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.011

Table S18. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ARID1A MUTATED	63	17	10
ARID1A WILD-TYPE	94	46	59

Figure S15. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.36

Table S19. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ARID1A MUTATED	7	8	21	13	2	10
ARID1A WILD-TYPE	26	11	38	26	14	35

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00269 (Fisher's exact test), Q value = 0.032

Table S20. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ARID1A MUTATED	18	7	16	4	10	6
ARID1A WILD-TYPE	29	32	19	28	13	29

Figure S16. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S21. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RNF43 MUTATED	1	37	5	3	2
RNF43 WILD-TYPE	78	89	22	40	10

Figure S17. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S22. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RNF43 MUTATED	1	27	6	3
RNF43 WILD-TYPE	70	49	28	60

Figure S18. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RNF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00147 (Fisher's exact test), Q value = 0.023

Table S23. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RNF43 MUTATED	3	19	10	3	7
RNF43 WILD-TYPE	13	43	41	62	48

Figure S19. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RNF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0033

Table S24. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RNF43 MUTATED	10	18	10	4
RNF43 WILD-TYPE	88	26	40	53

Figure S20. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S25. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RNF43 MUTATED	21	2	4	12	1
RNF43 WILD-TYPE	41	57	36	25	58

Figure S21. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S26. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RNF43 MUTATED	5	2	33
RNF43 WILD-TYPE	101	52	64

Figure S22. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S27. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RNF43 MUTATED	39	6	4
RNF43 WILD-TYPE	84	89	67

Figure S23. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S28. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RNF43 MUTATED	44	4	1
RNF43 WILD-TYPE	113	59	68

Figure S24. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00276 (Fisher's exact test), Q value = 0.033

Table S29. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RNF43 MUTATED	5	6	10	10	0	1
RNF43 WILD-TYPE	28	13	49	29	16	44

Figure S25. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029

Table S30. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RNF43 MUTATED	15	1	6	3	7	0
RNF43 WILD-TYPE	32	38	29	29	16	35

Figure S26. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S31. Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MLL4 MUTATED	1	30	2	2	2
MLL4 WILD-TYPE	78	96	25	41	10

Figure S27. Get High-res Image Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S32. Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MLL4 MUTATED	2	22	5	1
MLL4 WILD-TYPE	69	54	29	62

Figure S28. Get High-res Image Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S33. Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MLL4 MUTATED	2	12	8	3	8
MLL4 WILD-TYPE	14	50	43	62	47

'MLL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00428 (Fisher's exact test), Q value = 0.041

Table S34. Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MLL4 MUTATED	8	13	8	4
MLL4 WILD-TYPE	90	31	42	53

Figure S29. Get High-res Image Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S35. Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MLL4 MUTATED	17	4	4	9	1
MLL4 WILD-TYPE	45	55	36	28	58

Figure S30. Get High-res Image Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MLL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S36. Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MLL4 MUTATED	5	2	28
MLL4 WILD-TYPE	101	52	69

Figure S31. Get High-res Image Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S37. Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MLL4 MUTATED	30	4	4
MLL4 WILD-TYPE	93	91	67

Figure S32. Get High-res Image Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.0073

Table S38. Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MLL4 MUTATED	32	2	4
MLL4 WILD-TYPE	125	61	65

Figure S33. Get High-res Image Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.12

Table S39. Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MLL4 MUTATED	3	6	10	6	0	2
MLL4 WILD-TYPE	30	13	49	33	16	43

Figure S34. Get High-res Image Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00046 (Fisher's exact test), Q value = 0.011

Table S40. Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MLL4 MUTATED	13	1	7	1	4	1
MLL4 WILD-TYPE	34	38	28	31	19	34

Figure S35. Get High-res Image Gene #4: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.007

Table S41. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
XYLT2 MUTATED	1	25	1	3	1
XYLT2 WILD-TYPE	78	101	26	40	11

Figure S36. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'XYLT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S42. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
XYLT2 MUTATED	2	22	5	1
XYLT2 WILD-TYPE	69	54	29	62

Figure S37. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'XYLT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00401 (Fisher's exact test), Q value = 0.04

Table S43. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
XYLT2 MUTATED	0	12	8	1	6
XYLT2 WILD-TYPE	16	50	43	64	49

Figure S38. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'XYLT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.0086

Table S44. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
XYLT2 MUTATED	5	12	8	2
XYLT2 WILD-TYPE	93	32	42	55

Figure S39. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0053

Table S45. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
XYLT2 MUTATED	16	3	2	7	1
XYLT2 WILD-TYPE	46	56	38	30	58

Figure S40. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00028 (Fisher's exact test), Q value = 0.0084

Table S46. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
XYLT2 MUTATED	5	3	21
XYLT2 WILD-TYPE	101	51	76

Figure S41. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00227 (Fisher's exact test), Q value = 0.03

Table S47. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
XYLT2 MUTATED	23	5	4
XYLT2 WILD-TYPE	100	90	67

Figure S42. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0057

Table S48. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
XYLT2 MUTATED	28	3	1
XYLT2 WILD-TYPE	129	60	68

Figure S43. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.074

Table S49. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
XYLT2 MUTATED	3	3	9	10	0	1
XYLT2 WILD-TYPE	30	16	50	29	16	44

Figure S44. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0034 (Fisher's exact test), Q value = 0.036

Table S50. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
XYLT2 MUTATED	11	1	5	2	6	1
XYLT2 WILD-TYPE	36	38	30	30	17	34

Figure S45. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.012

Table S51. Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LARP4B MUTATED	1	22	2	1	1
LARP4B WILD-TYPE	78	104	25	42	11

Figure S46. Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LARP4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S52. Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LARP4B MUTATED	2	16	0	1
LARP4B WILD-TYPE	69	60	34	62

Figure S47. Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LARP4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0399 (Fisher's exact test), Q value = 0.14

Table S53. Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LARP4B MUTATED	1	9	5	1	8
LARP4B WILD-TYPE	15	53	46	64	47

Figure S48. Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LARP4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S54. Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LARP4B MUTATED	5	12	6	1
LARP4B WILD-TYPE	93	32	44	56

Figure S49. Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00677 (Fisher's exact test), Q value = 0.054

Table S55. Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LARP4B MUTATED	11	3	2	6	1
LARP4B WILD-TYPE	51	56	38	31	58

Figure S50. Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LARP4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00315 (Fisher's exact test), Q value = 0.034

Table S56. Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LARP4B MUTATED	6	1	16
LARP4B WILD-TYPE	100	53	81

Figure S51. Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00055 (Fisher's exact test), Q value = 0.013

Table S57. Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LARP4B MUTATED	21	4	2
LARP4B WILD-TYPE	102	91	69

Figure S52. Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.0096

Table S58. Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LARP4B MUTATED	24	2	1
LARP4B WILD-TYPE	133	61	68

Figure S53. Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S59. Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LARP4B MUTATED	5	3	6	4	0	1
LARP4B WILD-TYPE	28	16	53	35	16	44

'LARP4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0907 (Fisher's exact test), Q value = 0.22

Table S60. Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LARP4B MUTATED	9	1	4	2	2	1
LARP4B WILD-TYPE	38	38	31	30	21	34

'BZRAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.24

Table S61. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BZRAP1 MUTATED	8	28	4	6	0
BZRAP1 WILD-TYPE	71	98	23	37	12

'BZRAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.38

Table S62. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BZRAP1 MUTATED	10	11	10	12
BZRAP1 WILD-TYPE	61	65	24	51

'BZRAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 0.85

Table S63. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BZRAP1 MUTATED	2	8	6	9	11
BZRAP1 WILD-TYPE	14	54	45	56	44

'BZRAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 0.89

Table S64. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BZRAP1 MUTATED	13	7	9	7
BZRAP1 WILD-TYPE	85	37	41	50

'BZRAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.044 (Fisher's exact test), Q value = 0.15

Table S65. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BZRAP1 MUTATED	17	10	6	3	5
BZRAP1 WILD-TYPE	45	49	34	34	54

Figure S54. Get High-res Image Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BZRAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.77

Table S66. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BZRAP1 MUTATED	19	9	13
BZRAP1 WILD-TYPE	87	45	84

'BZRAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 0.92

Table S67. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BZRAP1 MUTATED	21	15	10
BZRAP1 WILD-TYPE	102	80	61

'BZRAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.72

Table S68. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BZRAP1 MUTATED	28	8	10
BZRAP1 WILD-TYPE	129	55	59

'BZRAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.33

Table S69. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BZRAP1 MUTATED	5	1	8	11	4	5
BZRAP1 WILD-TYPE	28	18	51	28	12	40

'BZRAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.084

Table S70. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BZRAP1 MUTATED	4	5	4	4	10	7
BZRAP1 WILD-TYPE	43	34	31	28	13	28

Figure S55. Get High-res Image Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.0089

Table S71. Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
B2M MUTATED	0	16	0	0	0
B2M WILD-TYPE	79	110	27	43	12

Figure S56. Get High-res Image Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'B2M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00243 (Fisher's exact test), Q value = 0.031

Table S72. Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
B2M MUTATED	1	11	3	1
B2M WILD-TYPE	70	65	31	62

Figure S57. Get High-res Image Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'B2M MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.26

Table S73. Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
B2M MUTATED	1	5	3	0	4
B2M WILD-TYPE	15	57	48	65	51

'B2M MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00711 (Fisher's exact test), Q value = 0.055

Table S74. Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
B2M MUTATED	3	6	4	0
B2M WILD-TYPE	95	38	46	57

Figure S58. Get High-res Image Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 9e-04 (Fisher's exact test), Q value = 0.017

Table S75. Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
B2M MUTATED	10	1	1	3	0
B2M WILD-TYPE	52	58	39	34	59

Figure S59. Get High-res Image Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'B2M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00307 (Fisher's exact test), Q value = 0.034

Table S76. Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
B2M MUTATED	2	1	12
B2M WILD-TYPE	104	53	85

Figure S60. Get High-res Image Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.079

Table S77. Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
B2M MUTATED	13	3	1
B2M WILD-TYPE	110	92	70

Figure S61. Get High-res Image Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'B2M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00591 (Fisher's exact test), Q value = 0.05

Table S78. Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
B2M MUTATED	15	2	0
B2M WILD-TYPE	142	61	69

Figure S62. Get High-res Image Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.48

Table S79. Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
B2M MUTATED	2	2	6	5	0	1
B2M WILD-TYPE	31	17	53	34	16	44

'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.14

Table S80. Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
B2M MUTATED	7	1	4	1	3	0
B2M WILD-TYPE	40	38	31	31	20	35

Figure S63. Get High-res Image Gene #8: 'B2M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.28

Table S81. Gene #9: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KRAS MUTATED	4	16	2	3	3
KRAS WILD-TYPE	75	110	25	40	9

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.56

Table S82. Gene #9: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KRAS MUTATED	4	10	2	5
KRAS WILD-TYPE	67	66	32	58

'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S83. Gene #9: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KRAS MUTATED	1	7	5	8	5
KRAS WILD-TYPE	15	55	46	57	50

'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.28

Table S84. Gene #9: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KRAS MUTATED	7	9	4	6
KRAS WILD-TYPE	91	35	46	51

'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.37

Table S85. Gene #9: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KRAS MUTATED	10	4	2	4	3
KRAS WILD-TYPE	52	55	38	33	56

'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0546 (Fisher's exact test), Q value = 0.17

Table S86. Gene #9: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KRAS MUTATED	7	2	14
KRAS WILD-TYPE	99	52	83

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S87. Gene #9: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KRAS MUTATED	17	6	5
KRAS WILD-TYPE	106	89	66

'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.35

Table S88. Gene #9: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KRAS MUTATED	20	4	4
KRAS WILD-TYPE	137	59	65

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 0.86

Table S89. Gene #9: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KRAS MUTATED	4	1	3	3	2	4
KRAS WILD-TYPE	29	18	56	36	14	41

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.69

Table S90. Gene #9: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KRAS MUTATED	3	1	3	4	3	3
KRAS WILD-TYPE	44	38	32	28	20	32

'HLA-B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00127 (Fisher's exact test), Q value = 0.021

Table S91. Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HLA-B MUTATED	0	16	3	1	0
HLA-B WILD-TYPE	79	110	24	42	12

Figure S64. Get High-res Image Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HLA-B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0046

Table S92. Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HLA-B MUTATED	0	6	7	1
HLA-B WILD-TYPE	71	70	27	62

Figure S65. Get High-res Image Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HLA-B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.074

Table S93. Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HLA-B MUTATED	2	8	3	0	6
HLA-B WILD-TYPE	14	54	48	65	49

Figure S66. Get High-res Image Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HLA-B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00534 (Fisher's exact test), Q value = 0.047

Table S94. Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HLA-B MUTATED	5	9	4	1
HLA-B WILD-TYPE	93	35	46	56

Figure S67. Get High-res Image Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0064

Table S95. Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HLA-B MUTATED	10	0	3	5	0
HLA-B WILD-TYPE	52	59	37	32	59

Figure S68. Get High-res Image Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HLA-B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00802 (Fisher's exact test), Q value = 0.059

Table S96. Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HLA-B MUTATED	6	0	12
HLA-B WILD-TYPE	100	54	85

Figure S69. Get High-res Image Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0055

Table S97. Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HLA-B MUTATED	17	3	0
HLA-B WILD-TYPE	106	92	71

Figure S70. Get High-res Image Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.091

Table S98. Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HLA-B MUTATED	17	2	1
HLA-B WILD-TYPE	140	61	68

Figure S71. Get High-res Image Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S99. Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HLA-B MUTATED	0	1	7	3	0	1
HLA-B WILD-TYPE	33	18	52	36	16	44

'HLA-B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00628 (Fisher's exact test), Q value = 0.051

Table S100. Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HLA-B MUTATED	2	1	5	0	4	0
HLA-B WILD-TYPE	45	38	30	32	19	35

Figure S72. Get High-res Image Gene #10: 'HLA-B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.21

Table S101. Gene #11: 'GNG12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GNG12 MUTATED	0	8	1	1	1
GNG12 WILD-TYPE	79	118	26	42	11

'GNG12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.25

Table S102. Gene #11: 'GNG12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GNG12 MUTATED	0	4	2	1
GNG12 WILD-TYPE	71	72	32	62

'GNG12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.38

Table S103. Gene #11: 'GNG12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GNG12 MUTATED	1	2	1	1	5
GNG12 WILD-TYPE	15	60	50	64	50

'GNG12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00627 (Fisher's exact test), Q value = 0.051

Table S104. Gene #11: 'GNG12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GNG12 MUTATED	2	6	0	2
GNG12 WILD-TYPE	96	38	50	55

Figure S73. Get High-res Image Gene #11: 'GNG12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00613 (Fisher's exact test), Q value = 0.051

Table S105. Gene #11: 'GNG12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GNG12 MUTATED	7	1	0	2	0
GNG12 WILD-TYPE	55	58	40	35	59

Figure S74. Get High-res Image Gene #11: 'GNG12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GNG12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0673 (Fisher's exact test), Q value = 0.19

Table S106. Gene #11: 'GNG12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GNG12 MUTATED	3	0	7
GNG12 WILD-TYPE	103	54	90

'GNG12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00331 (Fisher's exact test), Q value = 0.036

Table S107. Gene #11: 'GNG12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GNG12 MUTATED	10	0	1
GNG12 WILD-TYPE	113	95	70

Figure S75. Get High-res Image Gene #11: 'GNG12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00637 (Fisher's exact test), Q value = 0.052

Table S108. Gene #11: 'GNG12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GNG12 MUTATED	11	0	0
GNG12 WILD-TYPE	146	63	69

Figure S76. Get High-res Image Gene #11: 'GNG12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.69

Table S109. Gene #11: 'GNG12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GNG12 MUTATED	1	1	3	2	0	0
GNG12 WILD-TYPE	32	18	56	37	16	45

'GNG12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.26

Table S110. Gene #11: 'GNG12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GNG12 MUTATED	3	0	2	0	2	0
GNG12 WILD-TYPE	44	39	33	32	21	35

'PLEKHA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00968 (Fisher's exact test), Q value = 0.065

Table S111. Gene #12: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLEKHA6 MUTATED	1	16	0	2	0
PLEKHA6 WILD-TYPE	78	110	27	41	12

Figure S77. Get High-res Image Gene #12: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.13

Table S112. Gene #12: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLEKHA6 MUTATED	1	10	2	3
PLEKHA6 WILD-TYPE	70	66	32	60

Figure S78. Get High-res Image Gene #12: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.75

Table S113. Gene #12: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PLEKHA6 MUTATED	1	7	3	3	5
PLEKHA6 WILD-TYPE	15	55	48	62	50

'PLEKHA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S114. Gene #12: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PLEKHA6 MUTATED	4	7	4	4
PLEKHA6 WILD-TYPE	94	37	46	53

'PLEKHA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 0.19

Table S115. Gene #12: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PLEKHA6 MUTATED	8	3	1	4	1
PLEKHA6 WILD-TYPE	54	56	39	33	58

'PLEKHA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.56

Table S116. Gene #12: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PLEKHA6 MUTATED	6	2	9
PLEKHA6 WILD-TYPE	100	52	88

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00245 (Fisher's exact test), Q value = 0.031

Table S117. Gene #12: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PLEKHA6 MUTATED	16	2	2
PLEKHA6 WILD-TYPE	107	93	69

Figure S79. Get High-res Image Gene #12: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0514 (Fisher's exact test), Q value = 0.16

Table S118. Gene #12: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PLEKHA6 MUTATED	16	1	3
PLEKHA6 WILD-TYPE	141	62	66

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.3

Table S119. Gene #12: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PLEKHA6 MUTATED	4	1	6	3	2	0
PLEKHA6 WILD-TYPE	29	18	53	36	14	45

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0861 (Fisher's exact test), Q value = 0.21

Table S120. Gene #12: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PLEKHA6 MUTATED	5	0	5	2	3	1
PLEKHA6 WILD-TYPE	42	39	30	30	20	34

'CDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S121. Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDH1 MUTATED	0	22	3	3	0
CDH1 WILD-TYPE	79	104	24	40	12

Figure S80. Get High-res Image Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029

Table S122. Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDH1 MUTATED	2	7	0	15
CDH1 WILD-TYPE	69	69	34	48

Figure S81. Get High-res Image Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.24

Table S123. Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CDH1 MUTATED	0	4	5	13	6
CDH1 WILD-TYPE	16	58	46	52	49

'CDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0956 (Fisher's exact test), Q value = 0.23

Table S124. Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CDH1 MUTATED	6	5	6	11
CDH1 WILD-TYPE	92	39	44	46

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.013

Table S125. Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CDH1 MUTATED	2	14	2	6	2
CDH1 WILD-TYPE	60	45	38	31	57

Figure S82. Get High-res Image Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0053

Table S126. Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CDH1 MUTATED	4	14	8
CDH1 WILD-TYPE	102	40	89

Figure S83. Get High-res Image Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00121 (Fisher's exact test), Q value = 0.02

Table S127. Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CDH1 MUTATED	11	17	1
CDH1 WILD-TYPE	112	78	70

Figure S84. Get High-res Image Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S128. Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CDH1 MUTATED	12	16	1
CDH1 WILD-TYPE	145	47	68

Figure S85. Get High-res Image Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00873 (Fisher's exact test), Q value = 0.062

Table S129. Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CDH1 MUTATED	0	2	6	2	3	11
CDH1 WILD-TYPE	33	17	53	37	13	34

Figure S86. Get High-res Image Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00659 (Fisher's exact test), Q value = 0.053

Table S130. Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CDH1 MUTATED	2	11	5	2	3	1
CDH1 WILD-TYPE	45	28	30	30	20	34

Figure S87. Get High-res Image Gene #13: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RHOA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S131. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RHOA MUTATED	1	12	1	2	0
RHOA WILD-TYPE	78	114	26	41	12

'RHOA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.57

Table S132. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RHOA MUTATED	2	4	2	6
RHOA WILD-TYPE	69	72	32	57

'RHOA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 0.97

Table S133. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RHOA MUTATED	0	4	3	3	4
RHOA WILD-TYPE	16	58	48	62	51

'RHOA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 0.91

Table S134. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RHOA MUTATED	5	2	4	3
RHOA WILD-TYPE	93	42	46	54

'RHOA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.55

Table S135. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RHOA MUTATED	3	4	2	4	1
RHOA WILD-TYPE	59	55	38	33	58

'RHOA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.67

Table S136. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RHOA MUTATED	4	4	6
RHOA WILD-TYPE	102	50	91

'RHOA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.13

Table S137. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RHOA MUTATED	5	10	1
RHOA WILD-TYPE	118	85	70

Figure S88. Get High-res Image Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RHOA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S138. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RHOA MUTATED	10	5	1
RHOA WILD-TYPE	147	58	68

'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0849 (Fisher's exact test), Q value = 0.21

Table S139. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RHOA MUTATED	0	2	3	0	1	5
RHOA WILD-TYPE	33	17	56	39	15	40

'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.63

Table S140. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RHOA MUTATED	2	4	2	2	1	0
RHOA WILD-TYPE	45	35	33	30	22	35

'LMAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00191 (Fisher's exact test), Q value = 0.027

Table S141. Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LMAN1 MUTATED	0	16	2	1	0
LMAN1 WILD-TYPE	79	110	25	42	12

Figure S89. Get High-res Image Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LMAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.12

Table S142. Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LMAN1 MUTATED	1	9	3	2
LMAN1 WILD-TYPE	70	67	31	61

Figure S90. Get High-res Image Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LMAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.28

Table S143. Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LMAN1 MUTATED	2	7	3	1	3
LMAN1 WILD-TYPE	14	55	48	64	52

'LMAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.15

Table S144. Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LMAN1 MUTATED	4	6	5	1
LMAN1 WILD-TYPE	94	38	45	56

Figure S91. Get High-res Image Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LMAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00254 (Fisher's exact test), Q value = 0.032

Table S145. Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LMAN1 MUTATED	8	1	2	5	0
LMAN1 WILD-TYPE	54	58	38	32	59

Figure S92. Get High-res Image Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LMAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00132 (Fisher's exact test), Q value = 0.021

Table S146. Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LMAN1 MUTATED	3	0	13
LMAN1 WILD-TYPE	103	54	84

Figure S93. Get High-res Image Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0049

Table S147. Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LMAN1 MUTATED	17	2	0
LMAN1 WILD-TYPE	106	93	71

Figure S94. Get High-res Image Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0022 (Fisher's exact test), Q value = 0.03

Table S148. Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LMAN1 MUTATED	17	2	0
LMAN1 WILD-TYPE	140	61	69

Figure S95. Get High-res Image Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0861 (Fisher's exact test), Q value = 0.21

Table S149. Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LMAN1 MUTATED	3	4	4	1	0	1
LMAN1 WILD-TYPE	30	15	55	38	16	44

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.077 (Fisher's exact test), Q value = 0.2

Table S150. Gene #15: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LMAN1 MUTATED	7	1	3	1	1	0
LMAN1 WILD-TYPE	40	38	32	31	22	35

'KLF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.1

Table S151. Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KLF3 MUTATED	2	14	3	0	0
KLF3 WILD-TYPE	77	112	24	43	12

Figure S96. Get High-res Image Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KLF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.014

Table S152. Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KLF3 MUTATED	2	12	3	0
KLF3 WILD-TYPE	69	64	31	63

Figure S97. Get High-res Image Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KLF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.27

Table S153. Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KLF3 MUTATED	0	4	3	1	7
KLF3 WILD-TYPE	16	58	48	64	48

'KLF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0047 (Fisher's exact test), Q value = 0.043

Table S154. Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KLF3 MUTATED	2	8	2	3
KLF3 WILD-TYPE	96	36	48	54

Figure S98. Get High-res Image Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KLF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.13

Table S155. Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KLF3 MUTATED	7	2	2	6	1
KLF3 WILD-TYPE	55	57	38	31	58

Figure S99. Get High-res Image Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KLF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00408 (Fisher's exact test), Q value = 0.04

Table S156. Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KLF3 MUTATED	2	3	13
KLF3 WILD-TYPE	104	51	84

Figure S100. Get High-res Image Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KLF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.35

Table S157. Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KLF3 MUTATED	12	4	3
KLF3 WILD-TYPE	111	91	68

'KLF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.4

Table S158. Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KLF3 MUTATED	14	2	3
KLF3 WILD-TYPE	143	61	66

'KLF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.36

Table S159. Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KLF3 MUTATED	2	4	3	5	0	3
KLF3 WILD-TYPE	31	15	56	34	16	42

'KLF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 0.77

Table S160. Gene #16: 'KLF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KLF3 MUTATED	5	2	3	4	2	1
KLF3 WILD-TYPE	42	37	32	28	21	34

'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00081 (Fisher's exact test), Q value = 0.016

Table S161. Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PTEN MUTATED	2	18	0	0	2
PTEN WILD-TYPE	77	108	27	43	10

Figure S101. Get High-res Image Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00135 (Fisher's exact test), Q value = 0.021

Table S162. Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PTEN MUTATED	2	9	5	0
PTEN WILD-TYPE	69	67	29	63

Figure S102. Get High-res Image Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.2

Table S163. Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PTEN MUTATED	0	8	4	1	6
PTEN WILD-TYPE	16	54	47	64	49

'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0691 (Fisher's exact test), Q value = 0.19

Table S164. Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PTEN MUTATED	7	7	4	1
PTEN WILD-TYPE	91	37	46	56

'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.012

Table S165. Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PTEN MUTATED	14	2	2	3	1
PTEN WILD-TYPE	48	57	38	34	58

Figure S103. Get High-res Image Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.61

Table S166. Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PTEN MUTATED	8	3	11
PTEN WILD-TYPE	98	51	86

'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.067

Table S167. Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PTEN MUTATED	16	6	1
PTEN WILD-TYPE	107	89	70

Figure S104. Get High-res Image Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.076

Table S168. Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PTEN MUTATED	19	3	1
PTEN WILD-TYPE	138	60	68

Figure S105. Get High-res Image Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.18

Table S169. Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PTEN MUTATED	3	1	6	6	0	0
PTEN WILD-TYPE	30	18	53	33	16	45

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0047 (Fisher's exact test), Q value = 0.043

Table S170. Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PTEN MUTATED	4	0	5	2	5	0
PTEN WILD-TYPE	43	39	30	30	18	35

Figure S106. Get High-res Image Gene #17: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MTG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0855 (Fisher's exact test), Q value = 0.21

Table S171. Gene #18: 'MTG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MTG1 MUTATED	0	6	2	0	0
MTG1 WILD-TYPE	79	120	25	43	12

'MTG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.08

Table S172. Gene #18: 'MTG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MTG1 MUTATED	0	5	2	0
MTG1 WILD-TYPE	71	71	32	63

Figure S107. Get High-res Image Gene #18: 'MTG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MTG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.49

Table S173. Gene #18: 'MTG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MTG1 MUTATED	0	3	2	0	3
MTG1 WILD-TYPE	16	59	49	65	52

'MTG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.069 (Fisher's exact test), Q value = 0.19

Table S174. Gene #18: 'MTG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MTG1 MUTATED	1	4	2	1
MTG1 WILD-TYPE	97	40	48	56

'MTG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.52

Table S175. Gene #18: 'MTG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MTG1 MUTATED	3	1	1	2	0
MTG1 WILD-TYPE	59	58	39	35	59

'MTG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.082

Table S176. Gene #18: 'MTG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MTG1 MUTATED	0	1	6
MTG1 WILD-TYPE	106	53	91

Figure S108. Get High-res Image Gene #18: 'MTG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MTG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.4

Table S177. Gene #18: 'MTG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MTG1 MUTATED	6	1	2
MTG1 WILD-TYPE	117	94	69

'MTG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.94

Table S178. Gene #18: 'MTG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MTG1 MUTATED	6	1	2
MTG1 WILD-TYPE	151	62	67

'MTG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.6

Table S179. Gene #18: 'MTG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MTG1 MUTATED	1	2	1	1	0	1
MTG1 WILD-TYPE	32	17	58	38	16	44

'MTG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.36

Table S180. Gene #18: 'MTG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MTG1 MUTATED	4	1	0	1	0	0
MTG1 WILD-TYPE	43	38	35	31	23	35

'FBXW7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.013

Table S181. Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FBXW7 MUTATED	2	23	1	1	0
FBXW7 WILD-TYPE	77	103	26	42	12

Figure S109. Get High-res Image Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXW7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0057

Table S182. Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FBXW7 MUTATED	2	17	1	3
FBXW7 WILD-TYPE	69	59	33	60

Figure S110. Get High-res Image Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FBXW7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.27

Table S183. Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FBXW7 MUTATED	1	10	6	2	5
FBXW7 WILD-TYPE	15	52	45	63	50

'FBXW7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 0.086

Table S184. Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FBXW7 MUTATED	5	9	7	3
FBXW7 WILD-TYPE	93	35	43	54

Figure S111. Get High-res Image Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00186 (Fisher's exact test), Q value = 0.027

Table S185. Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FBXW7 MUTATED	14	3	1	3	2
FBXW7 WILD-TYPE	48	56	39	34	57

Figure S112. Get High-res Image Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0505 (Fisher's exact test), Q value = 0.16

Table S186. Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FBXW7 MUTATED	5	4	14
FBXW7 WILD-TYPE	101	50	83

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 0.12

Table S187. Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FBXW7 MUTATED	18	4	5
FBXW7 WILD-TYPE	105	91	66

Figure S113. Get High-res Image Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0944 (Fisher's exact test), Q value = 0.23

Table S188. Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FBXW7 MUTATED	20	4	3
FBXW7 WILD-TYPE	137	59	66

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.17

Table S189. Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FBXW7 MUTATED	4	3	6	8	0	1
FBXW7 WILD-TYPE	29	16	53	31	16	44

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.4

Table S190. Gene #19: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FBXW7 MUTATED	8	1	5	4	2	2
FBXW7 WILD-TYPE	39	38	30	28	21	33

'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.52

Table S191. Gene #20: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SMAD4 MUTATED	5	10	2	7	0
SMAD4 WILD-TYPE	74	116	25	36	12

'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 0.86

Table S192. Gene #20: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SMAD4 MUTATED	4	7	3	6
SMAD4 WILD-TYPE	67	69	31	57

'SMAD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.24

Table S193. Gene #20: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SMAD4 MUTATED	0	8	1	8	3
SMAD4 WILD-TYPE	16	54	50	57	52

'SMAD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0599 (Fisher's exact test), Q value = 0.17

Table S194. Gene #20: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SMAD4 MUTATED	3	5	4	8
SMAD4 WILD-TYPE	95	39	46	49

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.19

Table S195. Gene #20: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SMAD4 MUTATED	7	3	6	4	1
SMAD4 WILD-TYPE	55	56	34	33	58

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.71

Table S196. Gene #20: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SMAD4 MUTATED	8	3	10
SMAD4 WILD-TYPE	98	51	87

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.11

Table S197. Gene #20: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SMAD4 MUTATED	12	11	1
SMAD4 WILD-TYPE	111	84	70

Figure S114. Get High-res Image Gene #20: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.56

Table S198. Gene #20: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SMAD4 MUTATED	15	6	3
SMAD4 WILD-TYPE	142	57	66

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.24

Table S199. Gene #20: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SMAD4 MUTATED	1	1	4	8	0	3
SMAD4 WILD-TYPE	32	18	55	31	16	42

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.75

Table S200. Gene #20: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SMAD4 MUTATED	5	2	3	3	3	1
SMAD4 WILD-TYPE	42	37	32	29	20	34

'ZBTB20 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S201. Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZBTB20 MUTATED	0	23	2	2	1
ZBTB20 WILD-TYPE	79	103	25	41	11

Figure S115. Get High-res Image Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZBTB20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0046

Table S202. Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZBTB20 MUTATED	0	15	2	3
ZBTB20 WILD-TYPE	71	61	32	60

Figure S116. Get High-res Image Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.4

Table S203. Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZBTB20 MUTATED	2	8	5	2	6
ZBTB20 WILD-TYPE	14	54	46	63	49

'ZBTB20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00415 (Fisher's exact test), Q value = 0.04

Table S204. Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZBTB20 MUTATED	4	10	6	3
ZBTB20 WILD-TYPE	94	34	44	54

Figure S117. Get High-res Image Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S205. Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZBTB20 MUTATED	14	1	2	9	0
ZBTB20 WILD-TYPE	48	58	38	28	59

Figure S118. Get High-res Image Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S206. Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZBTB20 MUTATED	5	0	21
ZBTB20 WILD-TYPE	101	54	76

Figure S119. Get High-res Image Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S207. Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZBTB20 MUTATED	24	3	1
ZBTB20 WILD-TYPE	99	92	70

Figure S120. Get High-res Image Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0069

Table S208. Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZBTB20 MUTATED	25	2	1
ZBTB20 WILD-TYPE	132	61	68

Figure S121. Get High-res Image Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00285 (Fisher's exact test), Q value = 0.033

Table S209. Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZBTB20 MUTATED	1	5	5	6	0	0
ZBTB20 WILD-TYPE	32	14	54	33	16	45

Figure S122. Get High-res Image Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00813 (Fisher's exact test), Q value = 0.059

Table S210. Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZBTB20 MUTATED	7	0	4	2	4	0
ZBTB20 WILD-TYPE	40	39	31	30	19	35

Figure S123. Get High-res Image Gene #21: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.14

Table S211. Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HLA-A MUTATED	1	11	2	0	1
HLA-A WILD-TYPE	78	115	25	43	11

Figure S124. Get High-res Image Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HLA-A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.092

Table S212. Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HLA-A MUTATED	1	6	3	0
HLA-A WILD-TYPE	70	70	31	63

Figure S125. Get High-res Image Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HLA-A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.086

Table S213. Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HLA-A MUTATED	0	8	2	0	3
HLA-A WILD-TYPE	16	54	49	65	52

Figure S126. Get High-res Image Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HLA-A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S214. Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HLA-A MUTATED	1	7	5	0
HLA-A WILD-TYPE	97	37	45	57

Figure S127. Get High-res Image Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.076

Table S215. Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HLA-A MUTATED	8	1	0	4	2
HLA-A WILD-TYPE	54	58	40	33	57

Figure S128. Get High-res Image Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HLA-A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.01

Table S216. Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HLA-A MUTATED	2	0	13
HLA-A WILD-TYPE	104	54	84

Figure S129. Get High-res Image Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00055 (Fisher's exact test), Q value = 0.013

Table S217. Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HLA-A MUTATED	13	0	2
HLA-A WILD-TYPE	110	95	69

Figure S130. Get High-res Image Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.092

Table S218. Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HLA-A MUTATED	13	0	2
HLA-A WILD-TYPE	144	63	67

Figure S131. Get High-res Image Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.41

Table S219. Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HLA-A MUTATED	1	2	3	3	0	0
HLA-A WILD-TYPE	32	17	56	36	16	45

'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00973 (Fisher's exact test), Q value = 0.065

Table S220. Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HLA-A MUTATED	6	0	1	0	2	0
HLA-A WILD-TYPE	41	39	34	32	21	35

Figure S132. Get High-res Image Gene #22: 'HLA-A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FRMD4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 0.16

Table S221. Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FRMD4A MUTATED	1	12	3	1	0
FRMD4A WILD-TYPE	78	114	24	42	12

'FRMD4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S222. Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FRMD4A MUTATED	0	13	2	1
FRMD4A WILD-TYPE	71	63	32	62

Figure S133. Get High-res Image Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FRMD4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S223. Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FRMD4A MUTATED	2	5	2	1	4
FRMD4A WILD-TYPE	14	57	49	64	51

'FRMD4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.081

Table S224. Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FRMD4A MUTATED	3	7	3	1
FRMD4A WILD-TYPE	95	37	47	56

Figure S134. Get High-res Image Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FRMD4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00902 (Fisher's exact test), Q value = 0.063

Table S225. Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FRMD4A MUTATED	10	1	2	3	1
FRMD4A WILD-TYPE	52	58	38	34	58

Figure S135. Get High-res Image Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FRMD4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00414 (Fisher's exact test), Q value = 0.04

Table S226. Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FRMD4A MUTATED	3	1	13
FRMD4A WILD-TYPE	103	53	84

Figure S136. Get High-res Image Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0077 (Fisher's exact test), Q value = 0.057

Table S227. Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FRMD4A MUTATED	14	3	1
FRMD4A WILD-TYPE	109	92	70

Figure S137. Get High-res Image Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.15

Table S228. Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FRMD4A MUTATED	15	2	1
FRMD4A WILD-TYPE	142	61	68

Figure S138. Get High-res Image Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.52

Table S229. Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FRMD4A MUTATED	3	2	5	5	0	1
FRMD4A WILD-TYPE	30	17	54	34	16	44

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.49

Table S230. Gene #23: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FRMD4A MUTATED	6	1	3	4	1	1
FRMD4A WILD-TYPE	41	38	32	28	22	34

'CTCF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00084 (Fisher's exact test), Q value = 0.017

Table S231. Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CTCF MUTATED	1	17	0	0	0
CTCF WILD-TYPE	78	109	27	43	12

Figure S139. Get High-res Image Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTCF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.092

Table S232. Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CTCF MUTATED	0	8	3	5
CTCF WILD-TYPE	71	68	31	58

Figure S140. Get High-res Image Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTCF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 0.89

Table S233. Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CTCF MUTATED	1	3	2	4	5
CTCF WILD-TYPE	15	59	49	61	50

'CTCF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.24

Table S234. Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CTCF MUTATED	3	6	2	4
CTCF WILD-TYPE	95	38	48	53

'CTCF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00359 (Fisher's exact test), Q value = 0.037

Table S235. Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CTCF MUTATED	9	2	1	4	0
CTCF WILD-TYPE	53	57	39	33	59

Figure S141. Get High-res Image Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.29

Table S236. Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CTCF MUTATED	4	2	10
CTCF WILD-TYPE	102	52	87

'CTCF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00289 (Fisher's exact test), Q value = 0.033

Table S237. Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CTCF MUTATED	14	4	0
CTCF WILD-TYPE	109	91	71

Figure S142. Get High-res Image Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0214 (Fisher's exact test), Q value = 0.099

Table S238. Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CTCF MUTATED	13	5	0
CTCF WILD-TYPE	144	58	69

Figure S143. Get High-res Image Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.3

Table S239. Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CTCF MUTATED	3	0	4	6	0	1
CTCF WILD-TYPE	30	19	55	33	16	44

'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.25

Table S240. Gene #24: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CTCF MUTATED	4	1	2	3	4	0
CTCF WILD-TYPE	43	38	33	29	19	35

'MLL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S241. Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MLL2 MUTATED	5	43	3	4	4
MLL2 WILD-TYPE	74	83	24	39	8

Figure S144. Get High-res Image Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S242. Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MLL2 MUTATED	3	27	10	4
MLL2 WILD-TYPE	68	49	24	59

Figure S145. Get High-res Image Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S243. Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MLL2 MUTATED	2	20	13	2	15
MLL2 WILD-TYPE	14	42	38	63	40

Figure S146. Get High-res Image Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MLL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S244. Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MLL2 MUTATED	13	23	12	4
MLL2 WILD-TYPE	85	21	38	53

Figure S147. Get High-res Image Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S245. Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MLL2 MUTATED	27	6	6	9	4
MLL2 WILD-TYPE	35	53	34	28	55

Figure S148. Get High-res Image Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MLL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0033

Table S246. Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MLL2 MUTATED	16	3	33
MLL2 WILD-TYPE	90	51	64

Figure S149. Get High-res Image Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S247. Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MLL2 MUTATED	46	5	8
MLL2 WILD-TYPE	77	90	63

Figure S150. Get High-res Image Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029

Table S248. Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MLL2 MUTATED	48	5	6
MLL2 WILD-TYPE	109	58	63

Figure S151. Get High-res Image Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00128 (Fisher's exact test), Q value = 0.021

Table S249. Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MLL2 MUTATED	4	7	15	10	0	2
MLL2 WILD-TYPE	29	12	44	29	16	43

Figure S152. Get High-res Image Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0025

Table S250. Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MLL2 MUTATED	15	2	11	3	7	0
MLL2 WILD-TYPE	32	37	24	29	16	35

Figure S153. Get High-res Image Gene #25: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0709 (Fisher's exact test), Q value = 0.19

Table S251. Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MVK MUTATED	0	8	1	3	1
MVK WILD-TYPE	79	118	26	40	11

'MVK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00095 (Fisher's exact test), Q value = 0.018

Table S252. Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MVK MUTATED	0	8	1	0
MVK WILD-TYPE	71	68	33	63

Figure S154. Get High-res Image Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MVK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.092

Table S253. Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MVK MUTATED	0	7	3	0	1
MVK WILD-TYPE	16	55	48	65	54

Figure S155. Get High-res Image Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MVK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0042

Table S254. Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MVK MUTATED	1	8	2	0
MVK WILD-TYPE	97	36	48	57

Figure S156. Get High-res Image Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.12

Table S255. Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MVK MUTATED	6	1	1	3	0
MVK WILD-TYPE	56	58	39	34	59

Figure S157. Get High-res Image Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MVK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.072

Table S256. Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MVK MUTATED	1	1	9
MVK WILD-TYPE	105	53	88

Figure S158. Get High-res Image Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0089 (Fisher's exact test), Q value = 0.062

Table S257. Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MVK MUTATED	11	1	1
MVK WILD-TYPE	112	94	70

Figure S159. Get High-res Image Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MVK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.073

Table S258. Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MVK MUTATED	12	1	0
MVK WILD-TYPE	145	62	69

Figure S160. Get High-res Image Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.43

Table S259. Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MVK MUTATED	0	2	1	2	0	1
MVK WILD-TYPE	33	17	58	37	16	44

'MVK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 0.79

Table S260. Gene #26: 'MVK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MVK MUTATED	3	1	1	1	0	0
MVK WILD-TYPE	44	38	34	31	23	35

'MBD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00715 (Fisher's exact test), Q value = 0.055

Table S261. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MBD6 MUTATED	1	16	2	1	2
MBD6 WILD-TYPE	78	110	25	42	10

Figure S161. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MBD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00473 (Fisher's exact test), Q value = 0.043

Table S262. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MBD6 MUTATED	2	12	0	3
MBD6 WILD-TYPE	69	64	34	60

Figure S162. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MBD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S263. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MBD6 MUTATED	0	9	3	2	6
MBD6 WILD-TYPE	16	53	48	63	49

'MBD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00111 (Fisher's exact test), Q value = 0.019

Table S264. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MBD6 MUTATED	2	9	6	3
MBD6 WILD-TYPE	96	35	44	54

Figure S163. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00055 (Fisher's exact test), Q value = 0.013

Table S265. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MBD6 MUTATED	11	2	1	4	0
MBD6 WILD-TYPE	51	57	39	33	59

Figure S164. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MBD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00453 (Fisher's exact test), Q value = 0.042

Table S266. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MBD6 MUTATED	2	3	13
MBD6 WILD-TYPE	104	51	84

Figure S165. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.1

Table S267. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MBD6 MUTATED	16	3	4
MBD6 WILD-TYPE	107	92	67

Figure S166. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.27

Table S268. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MBD6 MUTATED	17	4	2
MBD6 WILD-TYPE	140	59	67

'MBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.33

Table S269. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MBD6 MUTATED	2	2	6	3	0	0
MBD6 WILD-TYPE	31	17	53	36	16	45

'MBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.073

Table S270. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MBD6 MUTATED	7	0	4	1	1	0
MBD6 WILD-TYPE	40	39	31	31	22	35

Figure S167. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.4

Table S271. Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
APC MUTATED	12	22	5	2	1
APC WILD-TYPE	67	104	22	41	11

'APC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.31

Table S272. Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
APC MUTATED	10	14	3	4
APC WILD-TYPE	61	62	31	59

'APC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.12

Table S273. Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
APC MUTATED	5	11	7	3	9
APC WILD-TYPE	11	51	44	62	46

Figure S168. Get High-res Image Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'APC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00059 (Fisher's exact test), Q value = 0.013

Table S274. Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
APC MUTATED	8	15	8	4
APC WILD-TYPE	90	29	42	53

Figure S169. Get High-res Image Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00949 (Fisher's exact test), Q value = 0.064

Table S275. Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
APC MUTATED	14	2	6	9	7
APC WILD-TYPE	48	57	34	28	52

Figure S170. Get High-res Image Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'APC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.0073

Table S276. Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
APC MUTATED	9	3	26
APC WILD-TYPE	97	51	71

Figure S171. Get High-res Image Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0061

Table S277. Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
APC MUTATED	29	4	9
APC WILD-TYPE	94	91	62

Figure S172. Get High-res Image Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'APC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0297 (Fisher's exact test), Q value = 0.12

Table S278. Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
APC MUTATED	28	3	11
APC WILD-TYPE	129	60	58

Figure S173. Get High-res Image Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 0.18

Table S279. Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
APC MUTATED	4	5	10	5	1	1
APC WILD-TYPE	29	14	49	34	15	44

'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0781 (Fisher's exact test), Q value = 0.2

Table S280. Gene #28: 'APC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
APC MUTATED	8	1	7	6	1	3
APC WILD-TYPE	39	38	28	26	22	32

'CD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00931 (Fisher's exact test), Q value = 0.064

Table S281. Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CD4 MUTATED	1	13	0	0	1
CD4 WILD-TYPE	78	113	27	43	11

Figure S174. Get High-res Image Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00209 (Fisher's exact test), Q value = 0.028

Table S282. Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CD4 MUTATED	1	11	0	2
CD4 WILD-TYPE	70	65	34	61

Figure S175. Get High-res Image Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.077

Table S283. Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CD4 MUTATED	0	4	7	0	2
CD4 WILD-TYPE	16	58	44	65	53

Figure S176. Get High-res Image Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.34

Table S284. Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CD4 MUTATED	4	5	3	1
CD4 WILD-TYPE	94	39	47	56

'CD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.29

Table S285. Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CD4 MUTATED	7	2	1	3	1
CD4 WILD-TYPE	55	57	39	34	58

'CD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00308 (Fisher's exact test), Q value = 0.034

Table S286. Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CD4 MUTATED	1	2	11
CD4 WILD-TYPE	105	52	86

Figure S177. Get High-res Image Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.1

Table S287. Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CD4 MUTATED	11	1	3
CD4 WILD-TYPE	112	94	68

Figure S178. Get High-res Image Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S288. Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CD4 MUTATED	12	1	2
CD4 WILD-TYPE	145	62	67

'CD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.088

Table S289. Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CD4 MUTATED	3	5	3	1	0	1
CD4 WILD-TYPE	30	14	56	38	16	44

Figure S179. Get High-res Image Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.63

Table S290. Gene #29: 'CD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CD4 MUTATED	6	1	2	2	1	1
CD4 WILD-TYPE	41	38	33	30	22	34

'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S291. Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIK3CA MUTATED	3	40	5	6	3
PIK3CA WILD-TYPE	76	86	22	37	9

Figure S180. Get High-res Image Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S292. Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIK3CA MUTATED	4	19	23	5
PIK3CA WILD-TYPE	67	57	11	58

Figure S181. Get High-res Image Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.007

Table S293. Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PIK3CA MUTATED	1	18	16	3	14
PIK3CA WILD-TYPE	15	44	35	62	41

Figure S182. Get High-res Image Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-04 (Fisher's exact test), Q value = 0.012

Table S294. Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PIK3CA MUTATED	19	16	14	3
PIK3CA WILD-TYPE	79	28	36	54

Figure S183. Get High-res Image Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0025

Table S295. Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PIK3CA MUTATED	25	10	5	10	2
PIK3CA WILD-TYPE	37	49	35	27	57

Figure S184. Get High-res Image Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.27

Table S296. Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PIK3CA MUTATED	22	6	24
PIK3CA WILD-TYPE	84	48	73

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.1

Table S297. Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PIK3CA MUTATED	33	16	8
PIK3CA WILD-TYPE	90	79	63

Figure S185. Get High-res Image Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0049

Table S298. Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PIK3CA MUTATED	43	11	3
PIK3CA WILD-TYPE	114	52	66

Figure S186. Get High-res Image Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0084

Table S299. Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PIK3CA MUTATED	2	3	21	11	0	4
PIK3CA WILD-TYPE	31	16	38	28	16	41

Figure S187. Get High-res Image Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0025

Table S300. Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PIK3CA MUTATED	12	4	15	4	6	0
PIK3CA WILD-TYPE	35	35	20	28	17	35

Figure S188. Get High-res Image Gene #30: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S301. Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
JARID2 MUTATED	0	22	3	0	3
JARID2 WILD-TYPE	79	104	24	43	9

Figure S189. Get High-res Image Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'JARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0084

Table S302. Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
JARID2 MUTATED	1	15	3	2
JARID2 WILD-TYPE	70	61	31	61

Figure S190. Get High-res Image Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'JARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.1

Table S303. Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
JARID2 MUTATED	0	10	6	1	6
JARID2 WILD-TYPE	16	52	45	64	49

Figure S191. Get High-res Image Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'JARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029

Table S304. Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
JARID2 MUTATED	4	12	6	1
JARID2 WILD-TYPE	94	32	44	56

Figure S192. Get High-res Image Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S305. Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
JARID2 MUTATED	16	1	3	6	0
JARID2 WILD-TYPE	46	58	37	31	59

Figure S193. Get High-res Image Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'JARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S306. Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
JARID2 MUTATED	3	0	23
JARID2 WILD-TYPE	103	54	74

Figure S194. Get High-res Image Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00153 (Fisher's exact test), Q value = 0.023

Table S307. Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
JARID2 MUTATED	21	4	3
JARID2 WILD-TYPE	102	91	68

Figure S195. Get High-res Image Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00192 (Fisher's exact test), Q value = 0.027

Table S308. Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
JARID2 MUTATED	24	2	2
JARID2 WILD-TYPE	133	61	67

Figure S196. Get High-res Image Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.35

Table S309. Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
JARID2 MUTATED	3	4	5	5	1	1
JARID2 WILD-TYPE	30	15	54	34	15	44

'JARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00984 (Fisher's exact test), Q value = 0.066

Table S310. Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
JARID2 MUTATED	11	1	3	1	2	1
JARID2 WILD-TYPE	36	38	32	31	21	34

Figure S197. Get High-res Image Gene #31: 'JARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.11

Table S311. Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PAX6 MUTATED	1	14	0	3	1
PAX6 WILD-TYPE	78	112	27	40	11

Figure S198. Get High-res Image Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00086 (Fisher's exact test), Q value = 0.017

Table S312. Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PAX6 MUTATED	0	11	3	2
PAX6 WILD-TYPE	71	65	31	61

Figure S199. Get High-res Image Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAX6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.15

Table S313. Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PAX6 MUTATED	1	9	3	1	2
PAX6 WILD-TYPE	15	53	48	64	53

Figure S200. Get High-res Image Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PAX6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00764 (Fisher's exact test), Q value = 0.057

Table S314. Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PAX6 MUTATED	5	7	4	0
PAX6 WILD-TYPE	93	37	46	57

Figure S201. Get High-res Image Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00112 (Fisher's exact test), Q value = 0.019

Table S315. Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PAX6 MUTATED	9	1	2	5	0
PAX6 WILD-TYPE	53	58	38	32	59

Figure S202. Get High-res Image Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PAX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00418 (Fisher's exact test), Q value = 0.04

Table S316. Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PAX6 MUTATED	3	1	13
PAX6 WILD-TYPE	103	53	84

Figure S203. Get High-res Image Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0053

Table S317. Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PAX6 MUTATED	17	2	0
PAX6 WILD-TYPE	106	93	71

Figure S204. Get High-res Image Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00652 (Fisher's exact test), Q value = 0.052

Table S318. Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PAX6 MUTATED	17	1	1
PAX6 WILD-TYPE	140	62	68

Figure S205. Get High-res Image Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00681 (Fisher's exact test), Q value = 0.054

Table S319. Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PAX6 MUTATED	1	3	3	7	0	0
PAX6 WILD-TYPE	32	16	56	32	16	45

Figure S206. Get High-res Image Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.31

Table S320. Gene #32: 'PAX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PAX6 MUTATED	5	0	2	3	3	1
PAX6 WILD-TYPE	42	39	33	29	20	34

'SNAPC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S321. Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SNAPC2 MUTATED	0	8	1	2	0
SNAPC2 WILD-TYPE	79	118	26	41	12

'SNAPC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.075

Table S322. Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SNAPC2 MUTATED	0	7	2	1
SNAPC2 WILD-TYPE	71	69	32	62

Figure S207. Get High-res Image Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SNAPC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.068

Table S323. Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SNAPC2 MUTATED	1	2	5	0	0
SNAPC2 WILD-TYPE	15	60	46	65	55

Figure S208. Get High-res Image Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SNAPC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S324. Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SNAPC2 MUTATED	1	7	0	0
SNAPC2 WILD-TYPE	97	37	50	57

Figure S209. Get High-res Image Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SNAPC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.014

Table S325. Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SNAPC2 MUTATED	6	0	0	4	0
SNAPC2 WILD-TYPE	56	59	40	33	59

Figure S210. Get High-res Image Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SNAPC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00246 (Fisher's exact test), Q value = 0.031

Table S326. Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SNAPC2 MUTATED	1	0	9
SNAPC2 WILD-TYPE	105	54	88

Figure S211. Get High-res Image Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00511 (Fisher's exact test), Q value = 0.045

Table S327. Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SNAPC2 MUTATED	10	1	0
SNAPC2 WILD-TYPE	113	94	71

Figure S212. Get High-res Image Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0408 (Fisher's exact test), Q value = 0.14

Table S328. Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SNAPC2 MUTATED	10	1	0
SNAPC2 WILD-TYPE	147	62	69

Figure S213. Get High-res Image Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S329. Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SNAPC2 MUTATED	0	3	3	2	0	1
SNAPC2 WILD-TYPE	33	16	56	37	16	44

'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.78

Table S330. Gene #33: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SNAPC2 MUTATED	3	1	2	2	1	0
SNAPC2 WILD-TYPE	44	38	33	30	22	35

'KIAA0182 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00936 (Fisher's exact test), Q value = 0.064

Table S331. Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA0182 MUTATED	1	16	0	2	1
KIAA0182 WILD-TYPE	78	110	27	41	11

Figure S214. Get High-res Image Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0182 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.19

Table S332. Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA0182 MUTATED	3	9	1	1
KIAA0182 WILD-TYPE	68	67	33	62

'KIAA0182 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.1

Table S333. Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIAA0182 MUTATED	0	7	5	0	5
KIAA0182 WILD-TYPE	16	55	46	65	50

Figure S215. Get High-res Image Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA0182 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S334. Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIAA0182 MUTATED	2	12	3	0
KIAA0182 WILD-TYPE	96	32	47	57

Figure S216. Get High-res Image Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0182 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0484 (Fisher's exact test), Q value = 0.15

Table S335. Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIAA0182 MUTATED	8	1	3	3	1
KIAA0182 WILD-TYPE	54	58	37	34	58

Figure S217. Get High-res Image Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA0182 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00134 (Fisher's exact test), Q value = 0.021

Table S336. Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIAA0182 MUTATED	3	0	13
KIAA0182 WILD-TYPE	103	54	84

Figure S218. Get High-res Image Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA0182 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.0096

Table S337. Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIAA0182 MUTATED	15	0	5
KIAA0182 WILD-TYPE	108	95	66

Figure S219. Get High-res Image Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0182 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00175 (Fisher's exact test), Q value = 0.026

Table S338. Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIAA0182 MUTATED	18	0	2
KIAA0182 WILD-TYPE	139	63	67

Figure S220. Get High-res Image Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA0182 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.069

Table S339. Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIAA0182 MUTATED	1	2	1	6	1	0
KIAA0182 WILD-TYPE	32	17	58	33	15	45

Figure S221. Get High-res Image Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIAA0182 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 0.097

Table S340. Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIAA0182 MUTATED	7	0	0	1	1	2
KIAA0182 WILD-TYPE	40	39	35	31	22	33

Figure S222. Get High-res Image Gene #34: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'AOC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 0.93

Table S341. Gene #35: 'AOC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AOC3 MUTATED	3	8	1	1	0
AOC3 WILD-TYPE	76	118	26	42	12

'AOC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.24

Table S342. Gene #35: 'AOC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AOC3 MUTATED	3	6	2	0
AOC3 WILD-TYPE	68	70	32	63

'AOC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.18

Table S343. Gene #35: 'AOC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
AOC3 MUTATED	0	0	4	1	4
AOC3 WILD-TYPE	16	62	47	64	51

'AOC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0478 (Fisher's exact test), Q value = 0.15

Table S344. Gene #35: 'AOC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
AOC3 MUTATED	2	5	1	1
AOC3 WILD-TYPE	96	39	49	56

Figure S223. Get High-res Image Gene #35: 'AOC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AOC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.33

Table S345. Gene #35: 'AOC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
AOC3 MUTATED	6	1	2	0	3
AOC3 WILD-TYPE	56	58	38	37	56

'AOC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.46

Table S346. Gene #35: 'AOC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
AOC3 MUTATED	4	1	7
AOC3 WILD-TYPE	102	53	90

'AOC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.51

Table S347. Gene #35: 'AOC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
AOC3 MUTATED	8	2	3
AOC3 WILD-TYPE	115	93	68

'AOC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.26

Table S348. Gene #35: 'AOC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
AOC3 MUTATED	9	0	4
AOC3 WILD-TYPE	148	63	65

'AOC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.45

Table S349. Gene #35: 'AOC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
AOC3 MUTATED	3	0	2	1	2	1
AOC3 WILD-TYPE	30	19	57	38	14	44

'AOC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.52

Table S350. Gene #35: 'AOC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
AOC3 MUTATED	4	0	1	2	0	2
AOC3 WILD-TYPE	43	39	34	30	23	33

'ZBTB7C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.12

Table S351. Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZBTB7C MUTATED	1	12	2	0	0
ZBTB7C WILD-TYPE	78	114	25	43	12

Figure S224. Get High-res Image Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZBTB7C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S352. Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZBTB7C MUTATED	0	12	1	0
ZBTB7C WILD-TYPE	71	64	33	63

Figure S225. Get High-res Image Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB7C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.14

Table S353. Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZBTB7C MUTATED	1	3	6	0	2
ZBTB7C WILD-TYPE	15	59	45	65	53

Figure S226. Get High-res Image Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZBTB7C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.15

Table S354. Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZBTB7C MUTATED	3	6	2	1
ZBTB7C WILD-TYPE	95	38	48	56

Figure S227. Get High-res Image Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.42

Table S355. Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZBTB7C MUTATED	5	1	2	3	1
ZBTB7C WILD-TYPE	57	58	38	34	58

'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.081

Table S356. Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZBTB7C MUTATED	1	2	9
ZBTB7C WILD-TYPE	105	52	88

Figure S228. Get High-res Image Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0674 (Fisher's exact test), Q value = 0.19

Table S357. Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZBTB7C MUTATED	11	2	2
ZBTB7C WILD-TYPE	112	93	69

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S358. Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZBTB7C MUTATED	12	1	2
ZBTB7C WILD-TYPE	145	62	67

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0957 (Fisher's exact test), Q value = 0.23

Table S359. Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZBTB7C MUTATED	2	3	6	3	0	0
ZBTB7C WILD-TYPE	31	16	53	36	16	45

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0685 (Fisher's exact test), Q value = 0.19

Table S360. Gene #36: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZBTB7C MUTATED	7	0	3	1	2	1
ZBTB7C WILD-TYPE	40	39	32	31	21	34

'NLK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 0.23

Table S361. Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NLK MUTATED	1	10	1	0	0
NLK WILD-TYPE	78	116	26	43	12

'NLK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.094

Table S362. Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NLK MUTATED	1	7	1	0
NLK WILD-TYPE	70	69	33	63

Figure S229. Get High-res Image Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NLK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.61

Table S363. Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NLK MUTATED	0	2	3	1	4
NLK WILD-TYPE	16	60	48	64	51

'NLK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00089 (Fisher's exact test), Q value = 0.017

Table S364. Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NLK MUTATED	2	7	0	1
NLK WILD-TYPE	96	37	50	56

Figure S230. Get High-res Image Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NLK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0483 (Fisher's exact test), Q value = 0.15

Table S365. Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NLK MUTATED	6	0	1	2	1
NLK WILD-TYPE	56	59	39	35	58

Figure S231. Get High-res Image Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NLK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.19

Table S366. Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NLK MUTATED	3	0	7
NLK WILD-TYPE	103	54	90

'NLK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.019

Table S367. Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NLK MUTATED	11	0	1
NLK WILD-TYPE	112	95	70

Figure S232. Get High-res Image Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NLK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00297 (Fisher's exact test), Q value = 0.034

Table S368. Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NLK MUTATED	12	0	0
NLK WILD-TYPE	145	63	69

Figure S233. Get High-res Image Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.24

Table S369. Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NLK MUTATED	1	3	3	1	1	0
NLK WILD-TYPE	32	16	56	38	15	45

'NLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0761 (Fisher's exact test), Q value = 0.2

Table S370. Gene #37: 'NLK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NLK MUTATED	5	0	1	1	2	0
NLK WILD-TYPE	42	39	34	31	21	35

'WBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.59

Table S371. Gene #38: 'WBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WBP1 MUTATED	1	6	1	0	0
WBP1 WILD-TYPE	78	120	26	43	12

'WBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.26

Table S372. Gene #38: 'WBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WBP1 MUTATED	0	5	1	2
WBP1 WILD-TYPE	71	71	33	61

'WBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.47

Table S373. Gene #38: 'WBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WBP1 MUTATED	1	3	2	0	2
WBP1 WILD-TYPE	15	59	49	65	53

'WBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00092 (Fisher's exact test), Q value = 0.017

Table S374. Gene #38: 'WBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WBP1 MUTATED	2	6	0	0
WBP1 WILD-TYPE	96	38	50	57

Figure S234. Get High-res Image Gene #38: 'WBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00874 (Fisher's exact test), Q value = 0.062

Table S375. Gene #38: 'WBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WBP1 MUTATED	4	0	0	3	0
WBP1 WILD-TYPE	58	59	40	34	59

Figure S235. Get High-res Image Gene #38: 'WBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.27

Table S376. Gene #38: 'WBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WBP1 MUTATED	2	0	5
WBP1 WILD-TYPE	104	54	92

'WBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00241 (Fisher's exact test), Q value = 0.031

Table S377. Gene #38: 'WBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WBP1 MUTATED	8	0	0
WBP1 WILD-TYPE	115	95	71

Figure S236. Get High-res Image Gene #38: 'WBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.15

Table S378. Gene #38: 'WBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WBP1 MUTATED	8	0	0
WBP1 WILD-TYPE	149	63	69

Figure S237. Get High-res Image Gene #38: 'WBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.6

Table S379. Gene #38: 'WBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WBP1 MUTATED	1	1	4	1	0	0
WBP1 WILD-TYPE	32	18	55	38	16	45

'WBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S380. Gene #38: 'WBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WBP1 MUTATED	3	0	3	1	0	0
WBP1 WILD-TYPE	44	39	32	31	23	35

'TMEM41A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.27

Table S381. Gene #39: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TMEM41A MUTATED	0	4	2	0	0
TMEM41A WILD-TYPE	79	122	25	43	12

'TMEM41A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.18

Table S382. Gene #39: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TMEM41A MUTATED	0	4	1	0
TMEM41A WILD-TYPE	71	72	33	63

'TMEM41A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 0.19

Table S383. Gene #39: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TMEM41A MUTATED	1	0	1	0	2
TMEM41A WILD-TYPE	15	62	50	65	53

'TMEM41A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.37

Table S384. Gene #39: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TMEM41A MUTATED	2	2	0	0
TMEM41A WILD-TYPE	96	42	50	57

'TMEM41A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.58

Table S385. Gene #39: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TMEM41A MUTATED	2	1	1	2	0
TMEM41A WILD-TYPE	60	58	39	35	59

'TMEM41A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0361 (Fisher's exact test), Q value = 0.13

Table S386. Gene #39: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TMEM41A MUTATED	0	1	5
TMEM41A WILD-TYPE	106	53	92

Figure S238. Get High-res Image Gene #39: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.29

Table S387. Gene #39: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TMEM41A MUTATED	5	1	0
TMEM41A WILD-TYPE	118	94	71

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.49

Table S388. Gene #39: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TMEM41A MUTATED	5	1	0
TMEM41A WILD-TYPE	152	62	69

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.75

Table S389. Gene #39: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TMEM41A MUTATED	0	1	1	2	0	1
TMEM41A WILD-TYPE	33	18	58	37	16	44

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 0.84

Table S390. Gene #39: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TMEM41A MUTATED	2	1	1	0	1	0
TMEM41A WILD-TYPE	45	38	34	32	22	35

'POLM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S391. Gene #40: 'POLM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
POLM MUTATED	1	8	0	0	1
POLM WILD-TYPE	78	118	27	43	11

'POLM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S392. Gene #40: 'POLM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
POLM MUTATED	1	6	0	1
POLM WILD-TYPE	70	70	34	62

'POLM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.12

Table S393. Gene #40: 'POLM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
POLM MUTATED	0	4	4	0	0
POLM WILD-TYPE	16	58	47	65	55

Figure S239. Get High-res Image Gene #40: 'POLM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'POLM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.076

Table S394. Gene #40: 'POLM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
POLM MUTATED	1	4	3	0
POLM WILD-TYPE	97	40	47	57

Figure S240. Get High-res Image Gene #40: 'POLM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'POLM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.51

Table S395. Gene #40: 'POLM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
POLM MUTATED	5	1	1	2	1
POLM WILD-TYPE	57	58	39	35	58

'POLM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.55

Table S396. Gene #40: 'POLM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
POLM MUTATED	3	1	6
POLM WILD-TYPE	103	53	91

'POLM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0817 (Fisher's exact test), Q value = 0.21

Table S397. Gene #40: 'POLM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
POLM MUTATED	8	1	1
POLM WILD-TYPE	115	94	70

'POLM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.17

Table S398. Gene #40: 'POLM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
POLM MUTATED	9	1	0
POLM WILD-TYPE	148	62	69

'POLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.4

Table S399. Gene #40: 'POLM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
POLM MUTATED	0	0	3	3	0	0
POLM WILD-TYPE	33	19	56	36	16	45

'POLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.63

Table S400. Gene #40: 'POLM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
POLM MUTATED	2	0	2	1	1	0
POLM WILD-TYPE	45	39	33	31	22	35

'ATP6V1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0037 (Fisher's exact test), Q value = 0.038

Table S401. Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ATP6V1B1 MUTATED	0	16	2	2	0
ATP6V1B1 WILD-TYPE	79	110	25	41	12

Figure S241. Get High-res Image Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.0095

Table S402. Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ATP6V1B1 MUTATED	0	11	3	1
ATP6V1B1 WILD-TYPE	71	65	31	62

Figure S242. Get High-res Image Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00463 (Fisher's exact test), Q value = 0.043

Table S403. Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ATP6V1B1 MUTATED	3	6	1	0	5
ATP6V1B1 WILD-TYPE	13	56	50	65	50

Figure S243. Get High-res Image Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.07 (Fisher's exact test), Q value = 0.19

Table S404. Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ATP6V1B1 MUTATED	4	6	4	1
ATP6V1B1 WILD-TYPE	94	38	46	56

'ATP6V1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00455 (Fisher's exact test), Q value = 0.042

Table S405. Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ATP6V1B1 MUTATED	10	2	3	2	0
ATP6V1B1 WILD-TYPE	52	57	37	35	59

Figure S244. Get High-res Image Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00446 (Fisher's exact test), Q value = 0.042

Table S406. Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ATP6V1B1 MUTATED	3	1	13
ATP6V1B1 WILD-TYPE	103	53	84

Figure S245. Get High-res Image Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S407. Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ATP6V1B1 MUTATED	19	0	1
ATP6V1B1 WILD-TYPE	104	95	70

Figure S246. Get High-res Image Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00132 (Fisher's exact test), Q value = 0.021

Table S408. Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ATP6V1B1 MUTATED	18	0	2
ATP6V1B1 WILD-TYPE	139	63	67

Figure S247. Get High-res Image Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00156 (Fisher's exact test), Q value = 0.024

Table S409. Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ATP6V1B1 MUTATED	2	6	4	2	0	0
ATP6V1B1 WILD-TYPE	31	13	55	37	16	45

Figure S248. Get High-res Image Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0358 (Fisher's exact test), Q value = 0.13

Table S410. Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ATP6V1B1 MUTATED	6	0	4	3	1	0
ATP6V1B1 WILD-TYPE	41	39	31	29	22	35

Figure S249. Get High-res Image Gene #41: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MUC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 0.95

Table S411. Gene #42: 'MUC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MUC6 MUTATED	8	18	3	4	1
MUC6 WILD-TYPE	71	108	24	39	11

'MUC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S412. Gene #42: 'MUC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MUC6 MUTATED	7	13	5	3
MUC6 WILD-TYPE	64	63	29	60

'MUC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.34

Table S413. Gene #42: 'MUC6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MUC6 MUTATED	2	11	6	3	6
MUC6 WILD-TYPE	14	51	45	62	49

'MUC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00305 (Fisher's exact test), Q value = 0.034

Table S414. Gene #42: 'MUC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MUC6 MUTATED	11	11	5	1
MUC6 WILD-TYPE	87	33	45	56

Figure S250. Get High-res Image Gene #42: 'MUC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MUC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00365 (Fisher's exact test), Q value = 0.037

Table S415. Gene #42: 'MUC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MUC6 MUTATED	16	2	3	3	6
MUC6 WILD-TYPE	46	57	37	34	53

Figure S251. Get High-res Image Gene #42: 'MUC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MUC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0187 (Fisher's exact test), Q value = 0.092

Table S416. Gene #42: 'MUC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MUC6 MUTATED	10	2	18
MUC6 WILD-TYPE	96	52	79

Figure S252. Get High-res Image Gene #42: 'MUC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MUC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00611 (Fisher's exact test), Q value = 0.05

Table S417. Gene #42: 'MUC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MUC6 MUTATED	22	4	8
MUC6 WILD-TYPE	101	91	63

Figure S253. Get High-res Image Gene #42: 'MUC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MUC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0839 (Fisher's exact test), Q value = 0.21

Table S418. Gene #42: 'MUC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MUC6 MUTATED	24	3	7
MUC6 WILD-TYPE	133	60	62

'MUC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0963 (Fisher's exact test), Q value = 0.23

Table S419. Gene #42: 'MUC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MUC6 MUTATED	5	3	6	8	1	1
MUC6 WILD-TYPE	28	16	53	31	15	44

'MUC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.59

Table S420. Gene #42: 'MUC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MUC6 MUTATED	6	1	5	4	3	5
MUC6 WILD-TYPE	41	38	30	28	20	30

'CIC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00082 (Fisher's exact test), Q value = 0.016

Table S421. Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CIC MUTATED	1	21	0	3	1
CIC WILD-TYPE	78	105	27	40	11

Figure S254. Get High-res Image Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CIC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00082 (Fisher's exact test), Q value = 0.016

Table S422. Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CIC MUTATED	1	14	1	3
CIC WILD-TYPE	70	62	33	60

Figure S255. Get High-res Image Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CIC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.17

Table S423. Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CIC MUTATED	0	10	7	2	5
CIC WILD-TYPE	16	52	44	63	50

'CIC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00298 (Fisher's exact test), Q value = 0.034

Table S424. Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CIC MUTATED	5	10	7	2
CIC WILD-TYPE	93	34	43	55

Figure S256. Get High-res Image Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.1

Table S425. Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CIC MUTATED	10	3	2	5	1
CIC WILD-TYPE	52	56	38	32	58

Figure S257. Get High-res Image Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CIC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00587 (Fisher's exact test), Q value = 0.049

Table S426. Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CIC MUTATED	4	2	15
CIC WILD-TYPE	102	52	82

Figure S258. Get High-res Image Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0053 (Fisher's exact test), Q value = 0.046

Table S427. Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CIC MUTATED	19	4	3
CIC WILD-TYPE	104	91	68

Figure S259. Get High-res Image Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CIC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00048 (Fisher's exact test), Q value = 0.012

Table S428. Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CIC MUTATED	22	4	0
CIC WILD-TYPE	135	59	69

Figure S260. Get High-res Image Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.54

Table S429. Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CIC MUTATED	2	1	7	4	0	1
CIC WILD-TYPE	31	18	52	35	16	44

'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0097 (Fisher's exact test), Q value = 0.065

Table S430. Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CIC MUTATED	7	1	5	0	2	0
CIC WILD-TYPE	40	38	30	32	21	35

Figure S261. Get High-res Image Gene #43: 'CIC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC27A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.17

Table S431. Gene #44: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC27A3 MUTATED	0	8	0	0	0
SLC27A3 WILD-TYPE	79	118	27	43	12

'SLC27A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.33

Table S432. Gene #44: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC27A3 MUTATED	0	4	1	1
SLC27A3 WILD-TYPE	71	72	33	62

'SLC27A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.83

Table S433. Gene #44: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC27A3 MUTATED	0	2	3	1	2
SLC27A3 WILD-TYPE	16	60	48	64	53

'SLC27A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S434. Gene #44: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC27A3 MUTATED	2	4	1	1
SLC27A3 WILD-TYPE	96	40	49	56

'SLC27A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.44

Table S435. Gene #44: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC27A3 MUTATED	3	1	2	2	0
SLC27A3 WILD-TYPE	59	58	38	35	59

'SLC27A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.083

Table S436. Gene #44: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC27A3 MUTATED	1	0	7
SLC27A3 WILD-TYPE	105	54	90

Figure S262. Get High-res Image Gene #44: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.1

Table S437. Gene #44: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC27A3 MUTATED	8	1	0
SLC27A3 WILD-TYPE	115	94	71

Figure S263. Get High-res Image Gene #44: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.28

Table S438. Gene #44: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC27A3 MUTATED	8	0	1
SLC27A3 WILD-TYPE	149	63	68

'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.47

Table S439. Gene #44: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC27A3 MUTATED	2	0	1	2	1	0
SLC27A3 WILD-TYPE	31	19	58	37	15	45

'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.59

Table S440. Gene #44: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC27A3 MUTATED	3	0	0	1	1	1
SLC27A3 WILD-TYPE	44	39	35	31	22	34

'ZMYM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S441. Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZMYM4 MUTATED	1	10	3	2	1
ZMYM4 WILD-TYPE	78	116	24	41	11

'ZMYM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 0.13

Table S442. Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZMYM4 MUTATED	1	6	4	1
ZMYM4 WILD-TYPE	70	70	30	62

Figure S264. Get High-res Image Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZMYM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.35

Table S443. Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZMYM4 MUTATED	2	6	3	1	4
ZMYM4 WILD-TYPE	14	56	48	64	51

'ZMYM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00894 (Fisher's exact test), Q value = 0.063

Table S444. Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZMYM4 MUTATED	4	8	3	1
ZMYM4 WILD-TYPE	94	36	47	56

Figure S265. Get High-res Image Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZMYM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.15

Table S445. Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZMYM4 MUTATED	8	1	2	3	1
ZMYM4 WILD-TYPE	54	58	38	34	58

Figure S266. Get High-res Image Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZMYM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S446. Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZMYM4 MUTATED	5	1	9
ZMYM4 WILD-TYPE	101	53	88

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.078

Table S447. Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZMYM4 MUTATED	13	3	1
ZMYM4 WILD-TYPE	110	92	70

Figure S267. Get High-res Image Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.084

Table S448. Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZMYM4 MUTATED	15	1	1
ZMYM4 WILD-TYPE	142	62	68

Figure S268. Get High-res Image Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.57

Table S449. Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZMYM4 MUTATED	1	2	3	4	0	1
ZMYM4 WILD-TYPE	32	17	56	35	16	44

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.39

Table S450. Gene #45: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZMYM4 MUTATED	2	1	3	2	3	0
ZMYM4 WILD-TYPE	45	38	32	30	20	35

'NT5M MUTATION STATUS' versus 'CN_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.63

Table S451. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NT5M MUTATED	0	4	0	1	0
NT5M WILD-TYPE	79	122	27	42	12

'NT5M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S452. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NT5M MUTATED	0	2	1	0
NT5M WILD-TYPE	71	74	33	63

'NT5M MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.6

Table S453. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NT5M MUTATED	0	0	0	1	2
NT5M WILD-TYPE	16	62	51	64	53

'NT5M MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.086 (Fisher's exact test), Q value = 0.21

Table S454. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NT5M MUTATED	0	2	0	1
NT5M WILD-TYPE	98	42	50	56

'NT5M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.71

Table S455. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NT5M MUTATED	2	1	0	1	0
NT5M WILD-TYPE	60	58	40	36	59

'NT5M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.57

Table S456. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NT5M MUTATED	1	0	3
NT5M WILD-TYPE	105	54	94

'NT5M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.12

Table S457. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NT5M MUTATED	5	0	0
NT5M WILD-TYPE	118	95	71

Figure S269. Get High-res Image Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NT5M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.4

Table S458. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NT5M MUTATED	5	0	0
NT5M WILD-TYPE	152	63	69

'NT5M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S459. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NT5M MUTATED	1	0	0	2	0	0
NT5M WILD-TYPE	32	19	59	37	16	45

'NT5M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.41

Table S460. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NT5M MUTATED	2	0	0	0	1	0
NT5M WILD-TYPE	45	39	35	32	22	35

'BCL9L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0596 (Fisher's exact test), Q value = 0.17

Table S461. Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BCL9L MUTATED	2	16	3	2	0
BCL9L WILD-TYPE	77	110	24	41	12

'BCL9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00959 (Fisher's exact test), Q value = 0.065

Table S462. Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BCL9L MUTATED	2	12	4	2
BCL9L WILD-TYPE	69	64	30	61

Figure S270. Get High-res Image Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCL9L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.092

Table S463. Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BCL9L MUTATED	3	10	4	1	4
BCL9L WILD-TYPE	13	52	47	64	51

Figure S271. Get High-res Image Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BCL9L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.011

Table S464. Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BCL9L MUTATED	5	11	5	1
BCL9L WILD-TYPE	93	33	45	56

Figure S272. Get High-res Image Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.013

Table S465. Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BCL9L MUTATED	12	2	1	6	1
BCL9L WILD-TYPE	50	57	39	31	58

Figure S273. Get High-res Image Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BCL9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.008

Table S466. Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BCL9L MUTATED	4	1	17
BCL9L WILD-TYPE	102	53	80

Figure S274. Get High-res Image Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.015

Table S467. Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BCL9L MUTATED	19	4	1
BCL9L WILD-TYPE	104	91	70

Figure S275. Get High-res Image Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00187 (Fisher's exact test), Q value = 0.027

Table S468. Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BCL9L MUTATED	21	2	1
BCL9L WILD-TYPE	136	61	68

Figure S276. Get High-res Image Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.41

Table S469. Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BCL9L MUTATED	4	1	7	5	0	1
BCL9L WILD-TYPE	29	18	52	34	16	44

'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S470. Gene #47: 'BCL9L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BCL9L MUTATED	7	1	3	2	4	1
BCL9L WILD-TYPE	40	38	32	30	19	34

'CCDC153 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.34

Table S471. Gene #48: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CCDC153 MUTATED	0	7	0	1	0
CCDC153 WILD-TYPE	79	119	27	42	12

'CCDC153 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.088

Table S472. Gene #48: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CCDC153 MUTATED	0	6	0	1
CCDC153 WILD-TYPE	71	70	34	62

Figure S277. Get High-res Image Gene #48: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC153 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.09

Table S473. Gene #48: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CCDC153 MUTATED	1	5	1	0	0
CCDC153 WILD-TYPE	15	57	50	65	55

Figure S278. Get High-res Image Gene #48: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CCDC153 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S474. Gene #48: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CCDC153 MUTATED	2	2	3	0
CCDC153 WILD-TYPE	96	42	47	57

'CCDC153 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.17

Table S475. Gene #48: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CCDC153 MUTATED	5	1	0	1	0
CCDC153 WILD-TYPE	57	58	40	36	59

'CCDC153 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.3

Table S476. Gene #48: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CCDC153 MUTATED	1	1	5
CCDC153 WILD-TYPE	105	53	92

'CCDC153 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.29

Table S477. Gene #48: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CCDC153 MUTATED	6	2	0
CCDC153 WILD-TYPE	117	93	71

'CCDC153 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S478. Gene #48: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CCDC153 MUTATED	7	1	0
CCDC153 WILD-TYPE	150	62	69

'CCDC153 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.56

Table S479. Gene #48: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CCDC153 MUTATED	0	2	3	1	0	1
CCDC153 WILD-TYPE	33	17	56	38	16	44

'CCDC153 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.46

Table S480. Gene #48: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CCDC153 MUTATED	4	1	1	0	1	0
CCDC153 WILD-TYPE	43	38	34	32	22	35

'IRF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.51

Table S481. Gene #49: 'IRF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IRF2 MUTATED	2	10	1	1	1
IRF2 WILD-TYPE	77	116	26	42	11

'IRF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.62

Table S482. Gene #49: 'IRF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IRF2 MUTATED	2	5	1	1
IRF2 WILD-TYPE	69	71	33	62

'IRF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.71

Table S483. Gene #49: 'IRF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IRF2 MUTATED	1	6	2	3	2
IRF2 WILD-TYPE	15	56	49	62	53

'IRF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0293 (Fisher's exact test), Q value = 0.12

Table S484. Gene #49: 'IRF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IRF2 MUTATED	3	7	2	2
IRF2 WILD-TYPE	95	37	48	55

Figure S279. Get High-res Image Gene #49: 'IRF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IRF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.48

Table S485. Gene #49: 'IRF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IRF2 MUTATED	6	2	2	1	1
IRF2 WILD-TYPE	56	57	38	36	58

'IRF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 0.81

Table S486. Gene #49: 'IRF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IRF2 MUTATED	4	2	6
IRF2 WILD-TYPE	102	52	91

'IRF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00992 (Fisher's exact test), Q value = 0.066

Table S487. Gene #49: 'IRF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IRF2 MUTATED	12	1	2
IRF2 WILD-TYPE	111	94	69

Figure S280. Get High-res Image Gene #49: 'IRF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IRF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0415 (Fisher's exact test), Q value = 0.14

Table S488. Gene #49: 'IRF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IRF2 MUTATED	13	1	1
IRF2 WILD-TYPE	144	62	68

Figure S281. Get High-res Image Gene #49: 'IRF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.4

Table S489. Gene #49: 'IRF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IRF2 MUTATED	1	0	5	1	1	0
IRF2 WILD-TYPE	32	19	54	38	15	45

'IRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0686 (Fisher's exact test), Q value = 0.19

Table S490. Gene #49: 'IRF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IRF2 MUTATED	1	0	4	2	1	0
IRF2 WILD-TYPE	46	39	31	30	22	35

'ADAM28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.37

Table S491. Gene #50: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ADAM28 MUTATED	2	10	0	1	1
ADAM28 WILD-TYPE	77	116	27	42	11

'ADAM28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00692 (Fisher's exact test), Q value = 0.054

Table S492. Gene #50: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ADAM28 MUTATED	2	8	0	0
ADAM28 WILD-TYPE	69	68	34	63

Figure S282. Get High-res Image Gene #50: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADAM28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.62

Table S493. Gene #50: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ADAM28 MUTATED	0	3	4	1	3
ADAM28 WILD-TYPE	16	59	47	64	52

'ADAM28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.27

Table S494. Gene #50: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ADAM28 MUTATED	3	5	2	1
ADAM28 WILD-TYPE	95	39	48	56

'ADAM28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.7

Table S495. Gene #50: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ADAM28 MUTATED	4	1	2	3	2
ADAM28 WILD-TYPE	58	58	38	34	57

'ADAM28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00422 (Fisher's exact test), Q value = 0.041

Table S496. Gene #50: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ADAM28 MUTATED	2	0	10
ADAM28 WILD-TYPE	104	54	87

Figure S283. Get High-res Image Gene #50: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ADAM28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.085

Table S497. Gene #50: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ADAM28 MUTATED	11	1	2
ADAM28 WILD-TYPE	112	94	69

Figure S284. Get High-res Image Gene #50: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADAM28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0785 (Fisher's exact test), Q value = 0.2

Table S498. Gene #50: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ADAM28 MUTATED	12	1	1
ADAM28 WILD-TYPE	145	62	68

'ADAM28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S499. Gene #50: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ADAM28 MUTATED	0	2	3	3	0	0
ADAM28 WILD-TYPE	33	17	56	36	16	45

'ADAM28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.4

Table S500. Gene #50: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ADAM28 MUTATED	3	0	3	1	1	0
ADAM28 WILD-TYPE	44	39	32	31	22	35

'BCOR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0064

Table S501. Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BCOR MUTATED	0	18	2	0	1
BCOR WILD-TYPE	79	108	25	43	11

Figure S285. Get High-res Image Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S502. Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BCOR MUTATED	0	5	8	2
BCOR WILD-TYPE	71	71	26	61

Figure S286. Get High-res Image Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.086

Table S503. Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BCOR MUTATED	1	7	1	1	8
BCOR WILD-TYPE	15	55	50	64	47

Figure S287. Get High-res Image Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BCOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00468 (Fisher's exact test), Q value = 0.043

Table S504. Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BCOR MUTATED	6	9	2	1
BCOR WILD-TYPE	92	35	48	56

Figure S288. Get High-res Image Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.068

Table S505. Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BCOR MUTATED	9	2	3	3	0
BCOR WILD-TYPE	53	57	37	34	59

Figure S289. Get High-res Image Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BCOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0614 (Fisher's exact test), Q value = 0.18

Table S506. Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BCOR MUTATED	9	0	8
BCOR WILD-TYPE	97	54	89

'BCOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00112 (Fisher's exact test), Q value = 0.019

Table S507. Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BCOR MUTATED	17	3	1
BCOR WILD-TYPE	106	92	70

Figure S290. Get High-res Image Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BCOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.068

Table S508. Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BCOR MUTATED	18	2	1
BCOR WILD-TYPE	139	61	68

Figure S291. Get High-res Image Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 0.82

Table S509. Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BCOR MUTATED	1	1	5	4	0	2
BCOR WILD-TYPE	32	18	54	35	16	43

'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.34

Table S510. Gene #51: 'BCOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BCOR MUTATED	5	2	4	2	0	0
BCOR WILD-TYPE	42	37	31	30	23	35

'GLI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00581 (Fisher's exact test), Q value = 0.049

Table S511. Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GLI1 MUTATED	0	12	2	1	2
GLI1 WILD-TYPE	79	114	25	42	10

Figure S292. Get High-res Image Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GLI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00554 (Fisher's exact test), Q value = 0.048

Table S512. Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GLI1 MUTATED	0	8	2	1
GLI1 WILD-TYPE	71	68	32	62

Figure S293. Get High-res Image Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GLI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.49

Table S513. Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GLI1 MUTATED	1	7	3	2	2
GLI1 WILD-TYPE	15	55	48	63	53

'GLI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0805 (Fisher's exact test), Q value = 0.21

Table S514. Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GLI1 MUTATED	3	6	4	2
GLI1 WILD-TYPE	95	38	46	55

'GLI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00224 (Fisher's exact test), Q value = 0.03

Table S515. Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GLI1 MUTATED	10	2	1	2	0
GLI1 WILD-TYPE	52	57	39	35	59

Figure S294. Get High-res Image Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GLI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.082

Table S516. Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GLI1 MUTATED	2	2	11
GLI1 WILD-TYPE	104	52	86

Figure S295. Get High-res Image Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GLI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.34

Table S517. Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GLI1 MUTATED	11	3	3
GLI1 WILD-TYPE	112	92	68

'GLI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.076

Table S518. Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GLI1 MUTATED	14	3	0
GLI1 WILD-TYPE	143	60	69

Figure S296. Get High-res Image Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GLI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.47

Table S519. Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GLI1 MUTATED	0	1	4	4	0	1
GLI1 WILD-TYPE	33	18	55	35	16	44

'GLI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.25

Table S520. Gene #52: 'GLI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GLI1 MUTATED	3	1	4	0	2	0
GLI1 WILD-TYPE	44	38	31	32	21	35

'DDC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.073

Table S521. Gene #53: 'DDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DDC MUTATED	0	7	0	0	2
DDC WILD-TYPE	79	119	27	43	10

Figure S297. Get High-res Image Gene #53: 'DDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.62

Table S522. Gene #53: 'DDC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DDC MUTATED	1	2	2	1
DDC WILD-TYPE	70	74	32	62

'DDC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.42

Table S523. Gene #53: 'DDC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DDC MUTATED	1	2	2	0	3
DDC WILD-TYPE	15	60	49	65	52

'DDC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.7

Table S524. Gene #53: 'DDC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DDC MUTATED	3	3	1	1
DDC WILD-TYPE	95	41	49	56

'DDC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00373 (Fisher's exact test), Q value = 0.038

Table S525. Gene #53: 'DDC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DDC MUTATED	6	0	1	0	0
DDC WILD-TYPE	56	59	39	37	59

Figure S298. Get High-res Image Gene #53: 'DDC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DDC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.57

Table S526. Gene #53: 'DDC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DDC MUTATED	3	0	4
DDC WILD-TYPE	103	54	93

'DDC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00119 (Fisher's exact test), Q value = 0.02

Table S527. Gene #53: 'DDC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DDC MUTATED	9	0	0
DDC WILD-TYPE	114	95	71

Figure S299. Get High-res Image Gene #53: 'DDC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0213 (Fisher's exact test), Q value = 0.099

Table S528. Gene #53: 'DDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DDC MUTATED	9	0	0
DDC WILD-TYPE	148	63	69

Figure S300. Get High-res Image Gene #53: 'DDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.54

Table S529. Gene #53: 'DDC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DDC MUTATED	0	1	3	2	0	0
DDC WILD-TYPE	33	18	56	37	16	45

'DDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.37

Table S530. Gene #53: 'DDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DDC MUTATED	1	0	2	1	2	0
DDC WILD-TYPE	46	39	33	31	21	35

'TBX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0423 (Fisher's exact test), Q value = 0.15

Table S531. Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TBX4 MUTATED	0	10	0	1	0
TBX4 WILD-TYPE	79	116	27	42	12

Figure S301. Get High-res Image Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TBX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.082

Table S532. Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TBX4 MUTATED	0	7	1	1
TBX4 WILD-TYPE	71	69	33	62

Figure S302. Get High-res Image Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TBX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.27

Table S533. Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TBX4 MUTATED	1	4	3	0	1
TBX4 WILD-TYPE	15	58	48	65	54

'TBX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0374 (Fisher's exact test), Q value = 0.14

Table S534. Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TBX4 MUTATED	2	4	3	0
TBX4 WILD-TYPE	96	40	47	57

Figure S303. Get High-res Image Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TBX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00262 (Fisher's exact test), Q value = 0.032

Table S535. Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TBX4 MUTATED	4	0	0	4	0
TBX4 WILD-TYPE	58	59	40	33	59

Figure S304. Get High-res Image Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TBX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.083

Table S536. Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TBX4 MUTATED	1	0	7
TBX4 WILD-TYPE	105	54	90

Figure S305. Get High-res Image Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.1

Table S537. Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TBX4 MUTATED	9	2	0
TBX4 WILD-TYPE	114	93	71

Figure S306. Get High-res Image Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 0.14

Table S538. Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TBX4 MUTATED	10	1	0
TBX4 WILD-TYPE	147	62	69

Figure S307. Get High-res Image Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.69

Table S539. Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TBX4 MUTATED	1	1	3	2	0	0
TBX4 WILD-TYPE	32	18	56	37	16	45

'TBX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.26

Table S540. Gene #54: 'TBX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TBX4 MUTATED	3	0	2	0	2	0
TBX4 WILD-TYPE	44	39	33	32	21	35

'GXYLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 0.17

Table S541. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GXYLT1 MUTATED	0	10	1	1	0
GXYLT1 WILD-TYPE	79	116	26	42	12

'GXYLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.097

Table S542. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GXYLT1 MUTATED	0	7	3	2
GXYLT1 WILD-TYPE	71	69	31	61

Figure S308. Get High-res Image Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GXYLT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.13

Table S543. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GXYLT1 MUTATED	0	7	3	0	2
GXYLT1 WILD-TYPE	16	55	48	65	53

Figure S309. Get High-res Image Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GXYLT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.14

Table S544. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GXYLT1 MUTATED	2	5	4	1
GXYLT1 WILD-TYPE	96	39	46	56

Figure S310. Get High-res Image Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GXYLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.091

Table S545. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GXYLT1 MUTATED	7	1	1	2	0
GXYLT1 WILD-TYPE	55	58	39	35	59

Figure S311. Get High-res Image Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GXYLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.39

Table S546. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GXYLT1 MUTATED	3	1	7
GXYLT1 WILD-TYPE	103	53	90

'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.069

Table S547. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GXYLT1 MUTATED	10	2	0
GXYLT1 WILD-TYPE	113	93	71

Figure S312. Get High-res Image Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.32

Table S548. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GXYLT1 MUTATED	10	1	1
GXYLT1 WILD-TYPE	147	62	68

'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.41

Table S549. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GXYLT1 MUTATED	0	1	5	4	0	1
GXYLT1 WILD-TYPE	33	18	54	35	16	44

'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.4

Table S550. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GXYLT1 MUTATED	3	1	3	0	3	1
GXYLT1 WILD-TYPE	44	38	32	32	20	34

'IWS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0465 (Fisher's exact test), Q value = 0.15

Table S551. Gene #56: 'IWS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IWS1 MUTATED	0	9	0	2	1
IWS1 WILD-TYPE	79	117	27	41	11

Figure S313. Get High-res Image Gene #56: 'IWS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IWS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.18

Table S552. Gene #56: 'IWS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IWS1 MUTATED	0	5	2	1
IWS1 WILD-TYPE	71	71	32	62

'IWS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.28

Table S553. Gene #56: 'IWS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IWS1 MUTATED	0	5	3	0	2
IWS1 WILD-TYPE	16	57	48	65	53

'IWS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00251 (Fisher's exact test), Q value = 0.031

Table S554. Gene #56: 'IWS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IWS1 MUTATED	1	5	4	0
IWS1 WILD-TYPE	97	39	46	57

Figure S314. Get High-res Image Gene #56: 'IWS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IWS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.19

Table S555. Gene #56: 'IWS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IWS1 MUTATED	5	1	1	3	0
IWS1 WILD-TYPE	57	58	39	34	59

'IWS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S556. Gene #56: 'IWS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IWS1 MUTATED	2	1	7
IWS1 WILD-TYPE	104	53	90

'IWS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.092

Table S557. Gene #56: 'IWS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IWS1 MUTATED	10	1	1
IWS1 WILD-TYPE	113	94	70

Figure S315. Get High-res Image Gene #56: 'IWS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IWS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.1

Table S558. Gene #56: 'IWS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IWS1 MUTATED	11	1	0
IWS1 WILD-TYPE	146	62	69

Figure S316. Get High-res Image Gene #56: 'IWS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IWS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 0.93

Table S559. Gene #56: 'IWS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IWS1 MUTATED	0	0	2	2	0	1
IWS1 WILD-TYPE	33	19	57	37	16	44

'IWS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.74

Table S560. Gene #56: 'IWS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IWS1 MUTATED	2	0	1	1	1	0
IWS1 WILD-TYPE	45	39	34	31	22	35

'C7ORF50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S561. Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C7ORF50 MUTATED	0	7	2	1	0
C7ORF50 WILD-TYPE	79	119	25	42	12

'C7ORF50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00121 (Fisher's exact test), Q value = 0.02

Table S562. Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C7ORF50 MUTATED	0	8	2	0
C7ORF50 WILD-TYPE	71	68	32	63

Figure S317. Get High-res Image Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C7ORF50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S563. Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C7ORF50 MUTATED	1	3	3	0	1
C7ORF50 WILD-TYPE	15	59	48	65	54

'C7ORF50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00106 (Fisher's exact test), Q value = 0.019

Table S564. Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C7ORF50 MUTATED	1	6	1	0
C7ORF50 WILD-TYPE	97	38	49	57

Figure S318. Get High-res Image Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C7ORF50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00376 (Fisher's exact test), Q value = 0.038

Table S565. Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C7ORF50 MUTATED	6	0	1	0	0
C7ORF50 WILD-TYPE	56	59	39	37	59

Figure S319. Get High-res Image Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C7ORF50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00134 (Fisher's exact test), Q value = 0.021

Table S566. Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C7ORF50 MUTATED	0	0	7
C7ORF50 WILD-TYPE	106	54	90

Figure S320. Get High-res Image Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.069

Table S567. Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C7ORF50 MUTATED	9	1	0
C7ORF50 WILD-TYPE	114	94	71

Figure S321. Get High-res Image Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0568 (Fisher's exact test), Q value = 0.17

Table S568. Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C7ORF50 MUTATED	9	1	0
C7ORF50 WILD-TYPE	148	62	69

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 0.83

Table S569. Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C7ORF50 MUTATED	1	1	5	2	0	1
C7ORF50 WILD-TYPE	32	18	54	37	16	44

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S570. Gene #57: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C7ORF50 MUTATED	5	1	3	1	0	0
C7ORF50 WILD-TYPE	42	38	32	31	23	35

'GAS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.85

Table S571. Gene #58: 'GAS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GAS6 MUTATED	3	9	1	2	1
GAS6 WILD-TYPE	76	117	26	41	11

'GAS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.085

Table S572. Gene #58: 'GAS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GAS6 MUTATED	2	9	0	1
GAS6 WILD-TYPE	69	67	34	62

Figure S322. Get High-res Image Gene #58: 'GAS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GAS6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.66

Table S573. Gene #58: 'GAS6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GAS6 MUTATED	1	6	2	2	3
GAS6 WILD-TYPE	15	56	49	63	52

'GAS6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.52

Table S574. Gene #58: 'GAS6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GAS6 MUTATED	5	5	2	2
GAS6 WILD-TYPE	93	39	48	55

'GAS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.45

Table S575. Gene #58: 'GAS6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GAS6 MUTATED	6	2	1	1	1
GAS6 WILD-TYPE	56	57	39	36	58

'GAS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.39

Table S576. Gene #58: 'GAS6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GAS6 MUTATED	3	1	7
GAS6 WILD-TYPE	103	53	90

'GAS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0887 (Fisher's exact test), Q value = 0.22

Table S577. Gene #58: 'GAS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GAS6 MUTATED	11	2	3
GAS6 WILD-TYPE	112	93	68

'GAS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.46

Table S578. Gene #58: 'GAS6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GAS6 MUTATED	11	1	4
GAS6 WILD-TYPE	146	62	65

'GAS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.25

Table S579. Gene #58: 'GAS6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GAS6 MUTATED	2	3	3	3	0	0
GAS6 WILD-TYPE	31	16	56	36	16	45

'GAS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.57

Table S580. Gene #58: 'GAS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GAS6 MUTATED	4	0	3	2	1	1
GAS6 WILD-TYPE	43	39	32	30	22	34

'AKAP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.59

Table S581. Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AKAP13 MUTATED	4	16	3	4	1
AKAP13 WILD-TYPE	75	110	24	39	11

'AKAP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00432 (Fisher's exact test), Q value = 0.041

Table S582. Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AKAP13 MUTATED	4	13	0	2
AKAP13 WILD-TYPE	67	63	34	61

Figure S323. Get High-res Image Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AKAP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0824 (Fisher's exact test), Q value = 0.21

Table S583. Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
AKAP13 MUTATED	2	8	9	2	5
AKAP13 WILD-TYPE	14	54	42	63	50

'AKAP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S584. Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
AKAP13 MUTATED	8	13	4	1
AKAP13 WILD-TYPE	90	31	46	56

Figure S324. Get High-res Image Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AKAP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0751 (Fisher's exact test), Q value = 0.2

Table S585. Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
AKAP13 MUTATED	9	2	5	6	3
AKAP13 WILD-TYPE	53	57	35	31	56

'AKAP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-04 (Fisher's exact test), Q value = 0.014

Table S586. Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
AKAP13 MUTATED	8	0	17
AKAP13 WILD-TYPE	98	54	80

Figure S325. Get High-res Image Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029

Table S587. Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
AKAP13 MUTATED	22	1	5
AKAP13 WILD-TYPE	101	94	66

Figure S326. Get High-res Image Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0094 (Fisher's exact test), Q value = 0.064

Table S588. Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
AKAP13 MUTATED	22	1	5
AKAP13 WILD-TYPE	135	62	64

Figure S327. Get High-res Image Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.11

Table S589. Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
AKAP13 MUTATED	1	3	7	5	0	0
AKAP13 WILD-TYPE	32	16	52	34	16	45

Figure S328. Get High-res Image Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.1

Table S590. Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
AKAP13 MUTATED	6	0	5	4	0	1
AKAP13 WILD-TYPE	41	39	30	28	23	34

Figure S329. Get High-res Image Gene #59: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PLAGL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.71

Table S591. Gene #60: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLAGL2 MUTATED	1	4	1	0	0
PLAGL2 WILD-TYPE	78	122	26	43	12

'PLAGL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 0.89

Table S592. Gene #60: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLAGL2 MUTATED	1	3	1	2
PLAGL2 WILD-TYPE	70	73	33	61

'PLAGL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.52

Table S593. Gene #60: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PLAGL2 MUTATED	1	0	1	2	2
PLAGL2 WILD-TYPE	15	62	50	63	53

'PLAGL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.35

Table S594. Gene #60: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PLAGL2 MUTATED	2	3	0	1
PLAGL2 WILD-TYPE	96	41	50	56

'PLAGL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.79

Table S595. Gene #60: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PLAGL2 MUTATED	3	1	0	1	1
PLAGL2 WILD-TYPE	59	58	40	36	58

'PLAGL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.75

Table S596. Gene #60: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PLAGL2 MUTATED	3	0	3
PLAGL2 WILD-TYPE	103	54	94

'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S597. Gene #60: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PLAGL2 MUTATED	3	2	2
PLAGL2 WILD-TYPE	120	93	69

'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 0.84

Table S598. Gene #60: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PLAGL2 MUTATED	5	1	1
PLAGL2 WILD-TYPE	152	62	68

'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.61

Table S599. Gene #60: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PLAGL2 MUTATED	1	0	2	1	2	1
PLAGL2 WILD-TYPE	32	19	57	38	14	44

'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S600. Gene #60: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PLAGL2 MUTATED	2	1	2	1	0	1
PLAGL2 WILD-TYPE	45	38	33	31	23	34

'C14ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.01

Table S601. Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C14ORF43 MUTATED	0	18	0	2	0
C14ORF43 WILD-TYPE	79	108	27	41	12

Figure S330. Get High-res Image Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C14ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0033

Table S602. Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C14ORF43 MUTATED	0	13	1	2
C14ORF43 WILD-TYPE	71	63	33	61

Figure S331. Get High-res Image Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C14ORF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.4

Table S603. Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C14ORF43 MUTATED	1	5	5	1	5
C14ORF43 WILD-TYPE	15	57	46	64	50

'C14ORF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S604. Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C14ORF43 MUTATED	3	12	1	1
C14ORF43 WILD-TYPE	95	32	49	56

Figure S332. Get High-res Image Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00973 (Fisher's exact test), Q value = 0.065

Table S605. Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C14ORF43 MUTATED	9	2	2	2	0
C14ORF43 WILD-TYPE	53	57	38	35	59

Figure S333. Get High-res Image Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0216 (Fisher's exact test), Q value = 0.099

Table S606. Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C14ORF43 MUTATED	3	1	11
C14ORF43 WILD-TYPE	103	53	86

Figure S334. Get High-res Image Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00256 (Fisher's exact test), Q value = 0.032

Table S607. Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C14ORF43 MUTATED	16	2	2
C14ORF43 WILD-TYPE	107	93	69

Figure S335. Get High-res Image Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00118 (Fisher's exact test), Q value = 0.02

Table S608. Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C14ORF43 MUTATED	18	2	0
C14ORF43 WILD-TYPE	139	61	69

Figure S336. Get High-res Image Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.62

Table S609. Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C14ORF43 MUTATED	3	2	4	4	0	1
C14ORF43 WILD-TYPE	30	17	55	35	16	44

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0786 (Fisher's exact test), Q value = 0.2

Table S610. Gene #61: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C14ORF43 MUTATED	7	1	3	1	2	0
C14ORF43 WILD-TYPE	40	38	32	31	21	35

'C1QTNF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.27

Table S611. Gene #62: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C1QTNF5 MUTATED	0	3	2	0	0
C1QTNF5 WILD-TYPE	79	123	25	43	12

'C1QTNF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.19

Table S612. Gene #62: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C1QTNF5 MUTATED	0	2	2	0
C1QTNF5 WILD-TYPE	71	74	32	63

'C1QTNF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.66

Table S613. Gene #62: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C1QTNF5 MUTATED	0	2	2	0	1
C1QTNF5 WILD-TYPE	16	60	49	65	54

'C1QTNF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00984 (Fisher's exact test), Q value = 0.066

Table S614. Gene #62: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C1QTNF5 MUTATED	0	3	2	0
C1QTNF5 WILD-TYPE	98	41	48	57

Figure S337. Get High-res Image Gene #62: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C1QTNF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.24

Table S615. Gene #62: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C1QTNF5 MUTATED	3	0	0	1	0
C1QTNF5 WILD-TYPE	59	59	40	36	59

'C1QTNF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.57

Table S616. Gene #62: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C1QTNF5 MUTATED	1	0	3
C1QTNF5 WILD-TYPE	105	54	94

'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.46

Table S617. Gene #62: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C1QTNF5 MUTATED	4	1	0
C1QTNF5 WILD-TYPE	119	94	71

'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.63

Table S618. Gene #62: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C1QTNF5 MUTATED	4	1	0
C1QTNF5 WILD-TYPE	153	62	69

'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.92

Table S619. Gene #62: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C1QTNF5 MUTATED	0	0	2	0	0	1
C1QTNF5 WILD-TYPE	33	19	57	39	16	44

'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S620. Gene #62: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C1QTNF5 MUTATED	1	1	1	0	0	0
C1QTNF5 WILD-TYPE	46	38	34	32	23	35

'WDR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.49

Table S621. Gene #63: 'WDR5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WDR5 MUTATED	0	5	1	1	0
WDR5 WILD-TYPE	79	121	26	42	12

'WDR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S622. Gene #63: 'WDR5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WDR5 MUTATED	1	2	0	1
WDR5 WILD-TYPE	70	74	34	62

'WDR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S623. Gene #63: 'WDR5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WDR5 MUTATED	0	2	1	2	2
WDR5 WILD-TYPE	16	60	50	63	53

'WDR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0443 (Fisher's exact test), Q value = 0.15

Table S624. Gene #63: 'WDR5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WDR5 MUTATED	0	3	2	2
WDR5 WILD-TYPE	98	41	48	55

Figure S338. Get High-res Image Gene #63: 'WDR5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WDR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S625. Gene #63: 'WDR5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WDR5 MUTATED	1	2	1	1	1
WDR5 WILD-TYPE	61	57	39	36	58

'WDR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S626. Gene #63: 'WDR5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WDR5 MUTATED	3	1	2
WDR5 WILD-TYPE	103	53	95

'WDR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.18

Table S627. Gene #63: 'WDR5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WDR5 MUTATED	6	1	0
WDR5 WILD-TYPE	117	94	71

'WDR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 0.93

Table S628. Gene #63: 'WDR5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WDR5 MUTATED	4	2	1
WDR5 WILD-TYPE	153	61	68

'WDR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.57

Table S629. Gene #63: 'WDR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WDR5 MUTATED	1	1	2	0	0	0
WDR5 WILD-TYPE	32	18	57	39	16	45

'WDR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.79

Table S630. Gene #63: 'WDR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WDR5 MUTATED	2	0	1	1	0	0
WDR5 WILD-TYPE	45	39	34	31	23	35

'PRSS36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0701 (Fisher's exact test), Q value = 0.19

Table S631. Gene #64: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRSS36 MUTATED	0	7	2	1	1
PRSS36 WILD-TYPE	79	119	25	42	11

'PRSS36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.095

Table S632. Gene #64: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRSS36 MUTATED	0	5	1	0
PRSS36 WILD-TYPE	71	71	33	63

Figure S339. Get High-res Image Gene #64: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PRSS36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.5

Table S633. Gene #64: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PRSS36 MUTATED	1	4	1	1	4
PRSS36 WILD-TYPE	15	58	50	64	51

'PRSS36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S634. Gene #64: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PRSS36 MUTATED	3	5	2	1
PRSS36 WILD-TYPE	95	39	48	56

'PRSS36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.39

Table S635. Gene #64: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PRSS36 MUTATED	4	1	2	1	0
PRSS36 WILD-TYPE	58	58	38	36	59

'PRSS36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0901 (Fisher's exact test), Q value = 0.22

Table S636. Gene #64: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PRSS36 MUTATED	1	1	6
PRSS36 WILD-TYPE	105	53	91

'PRSS36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.18

Table S637. Gene #64: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PRSS36 MUTATED	8	3	0
PRSS36 WILD-TYPE	115	92	71

'PRSS36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.67

Table S638. Gene #64: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PRSS36 MUTATED	7	3	1
PRSS36 WILD-TYPE	150	60	68

'PRSS36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S639. Gene #64: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PRSS36 MUTATED	1	0	3	1	0	1
PRSS36 WILD-TYPE	32	19	56	38	16	44

'PRSS36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.44

Table S640. Gene #64: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PRSS36 MUTATED	2	1	3	0	0	0
PRSS36 WILD-TYPE	45	38	32	32	23	35

'PAFAH1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.11

Table S641. Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PAFAH1B1 MUTATED	0	10	1	0	0
PAFAH1B1 WILD-TYPE	79	116	26	43	12

Figure S340. Get High-res Image Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.081

Table S642. Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PAFAH1B1 MUTATED	0	7	1	1
PAFAH1B1 WILD-TYPE	71	69	33	62

Figure S341. Get High-res Image Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0348 (Fisher's exact test), Q value = 0.13

Table S643. Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PAFAH1B1 MUTATED	1	1	5	0	3
PAFAH1B1 WILD-TYPE	15	61	46	65	52

Figure S342. Get High-res Image Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00079 (Fisher's exact test), Q value = 0.016

Table S644. Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PAFAH1B1 MUTATED	2	7	1	0
PAFAH1B1 WILD-TYPE	96	37	49	57

Figure S343. Get High-res Image Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PAFAH1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.097

Table S645. Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PAFAH1B1 MUTATED	7	1	2	1	0
PAFAH1B1 WILD-TYPE	55	58	38	36	59

Figure S344. Get High-res Image Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.069

Table S646. Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PAFAH1B1 MUTATED	2	0	9
PAFAH1B1 WILD-TYPE	104	54	88

Figure S345. Get High-res Image Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.092

Table S647. Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PAFAH1B1 MUTATED	10	1	1
PAFAH1B1 WILD-TYPE	113	94	70

Figure S346. Get High-res Image Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S648. Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PAFAH1B1 MUTATED	10	1	1
PAFAH1B1 WILD-TYPE	147	62	68

'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 0.96

Table S649. Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PAFAH1B1 MUTATED	2	1	3	2	0	1
PAFAH1B1 WILD-TYPE	31	18	56	37	16	44

'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.67

Table S650. Gene #65: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PAFAH1B1 MUTATED	4	1	2	1	1	0
PAFAH1B1 WILD-TYPE	43	38	33	31	22	35

'EPHA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.1

Table S651. Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EPHA2 MUTATED	1	14	4	2	1
EPHA2 WILD-TYPE	78	112	23	41	11

Figure S347. Get High-res Image Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPHA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.079

Table S652. Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EPHA2 MUTATED	3	13	2	2
EPHA2 WILD-TYPE	68	63	32	61

Figure S348. Get High-res Image Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPHA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 0.095

Table S653. Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EPHA2 MUTATED	3	5	4	0	3
EPHA2 WILD-TYPE	13	57	47	65	52

Figure S349. Get High-res Image Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EPHA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00075 (Fisher's exact test), Q value = 0.015

Table S654. Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EPHA2 MUTATED	3	8	4	0
EPHA2 WILD-TYPE	95	36	46	57

Figure S350. Get High-res Image Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0042

Table S655. Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EPHA2 MUTATED	9	0	4	8	1
EPHA2 WILD-TYPE	53	59	36	29	58

Figure S351. Get High-res Image Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPHA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0025

Table S656. Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EPHA2 MUTATED	2	1	19
EPHA2 WILD-TYPE	104	53	78

Figure S352. Get High-res Image Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.0089

Table S657. Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EPHA2 MUTATED	19	2	2
EPHA2 WILD-TYPE	104	93	69

Figure S353. Get High-res Image Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00061 (Fisher's exact test), Q value = 0.013

Table S658. Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EPHA2 MUTATED	21	1	1
EPHA2 WILD-TYPE	136	62	68

Figure S354. Get High-res Image Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00178 (Fisher's exact test), Q value = 0.026

Table S659. Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EPHA2 MUTATED	3	7	3	4	0	1
EPHA2 WILD-TYPE	30	12	56	35	16	44

Figure S355. Get High-res Image Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00065 (Fisher's exact test), Q value = 0.014

Table S660. Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EPHA2 MUTATED	11	2	2	0	3	0
EPHA2 WILD-TYPE	36	37	33	32	20	35

Figure S356. Get High-res Image Gene #66: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC16A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.4

Table S661. Gene #67: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC16A6 MUTATED	0	6	0	1	0
SLC16A6 WILD-TYPE	79	120	27	42	12

'SLC16A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.097

Table S662. Gene #67: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC16A6 MUTATED	0	5	1	0
SLC16A6 WILD-TYPE	71	71	33	63

Figure S357. Get High-res Image Gene #67: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC16A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 0.8

Table S663. Gene #67: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC16A6 MUTATED	0	1	1	1	3
SLC16A6 WILD-TYPE	16	61	50	64	52

'SLC16A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 0.89

Table S664. Gene #67: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC16A6 MUTATED	2	2	1	1
SLC16A6 WILD-TYPE	96	42	49	56

'SLC16A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.42

Table S665. Gene #67: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC16A6 MUTATED	4	1	1	1	0
SLC16A6 WILD-TYPE	58	58	39	36	59

'SLC16A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.71

Table S666. Gene #67: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC16A6 MUTATED	2	1	4
SLC16A6 WILD-TYPE	104	53	93

'SLC16A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S667. Gene #67: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC16A6 MUTATED	5	2	0
SLC16A6 WILD-TYPE	118	93	71

'SLC16A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0702 (Fisher's exact test), Q value = 0.19

Table S668. Gene #67: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC16A6 MUTATED	7	0	0
SLC16A6 WILD-TYPE	150	63	69

'SLC16A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S669. Gene #67: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC16A6 MUTATED	2	1	0	2	0	0
SLC16A6 WILD-TYPE	31	18	59	37	16	45

'SLC16A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.4

Table S670. Gene #67: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC16A6 MUTATED	2	0	0	2	1	0
SLC16A6 WILD-TYPE	45	39	35	30	22	35

'C9ORF131 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.082

Table S671. Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C9ORF131 MUTATED	1	10	0	0	2
C9ORF131 WILD-TYPE	78	116	27	43	10

Figure S358. Get High-res Image Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C9ORF131 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.081

Table S672. Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C9ORF131 MUTATED	0	7	1	1
C9ORF131 WILD-TYPE	71	69	33	62

Figure S359. Get High-res Image Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C9ORF131 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.69

Table S673. Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C9ORF131 MUTATED	0	4	3	1	2
C9ORF131 WILD-TYPE	16	58	48	64	53

'C9ORF131 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.088

Table S674. Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C9ORF131 MUTATED	1	5	3	1
C9ORF131 WILD-TYPE	97	39	47	56

Figure S360. Get High-res Image Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C9ORF131 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.19

Table S675. Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C9ORF131 MUTATED	5	1	1	3	0
C9ORF131 WILD-TYPE	57	58	39	34	59

'C9ORF131 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0257 (Fisher's exact test), Q value = 0.11

Table S676. Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C9ORF131 MUTATED	1	1	8
C9ORF131 WILD-TYPE	105	53	89

Figure S361. Get High-res Image Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0454 (Fisher's exact test), Q value = 0.15

Table S677. Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C9ORF131 MUTATED	10	2	1
C9ORF131 WILD-TYPE	113	93	70

Figure S362. Get High-res Image Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S678. Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C9ORF131 MUTATED	10	2	1
C9ORF131 WILD-TYPE	147	61	68

'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.6

Table S679. Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C9ORF131 MUTATED	1	1	4	1	0	0
C9ORF131 WILD-TYPE	32	18	55	38	16	45

'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S680. Gene #68: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C9ORF131 MUTATED	2	0	2	1	1	1
C9ORF131 WILD-TYPE	45	39	33	31	22	34

'WNT16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00769 (Fisher's exact test), Q value = 0.057

Table S681. Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WNT16 MUTATED	0	12	1	0	0
WNT16 WILD-TYPE	79	114	26	43	12

Figure S363. Get High-res Image Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WNT16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.073

Table S682. Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WNT16 MUTATED	0	7	2	1
WNT16 WILD-TYPE	71	69	32	62

Figure S364. Get High-res Image Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WNT16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S683. Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WNT16 MUTATED	1	5	3	0	2
WNT16 WILD-TYPE	15	57	48	65	53

'WNT16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00415 (Fisher's exact test), Q value = 0.04

Table S684. Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WNT16 MUTATED	2	6	3	0
WNT16 WILD-TYPE	96	38	47	57

Figure S365. Get High-res Image Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WNT16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0057

Table S685. Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WNT16 MUTATED	10	1	0	1	0
WNT16 WILD-TYPE	52	58	40	36	59

Figure S366. Get High-res Image Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WNT16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0187 (Fisher's exact test), Q value = 0.092

Table S686. Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WNT16 MUTATED	3	0	9
WNT16 WILD-TYPE	103	54	88

Figure S367. Get High-res Image Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WNT16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00094 (Fisher's exact test), Q value = 0.018

Table S687. Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WNT16 MUTATED	12	1	0
WNT16 WILD-TYPE	111	94	71

Figure S368. Get High-res Image Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WNT16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00176 (Fisher's exact test), Q value = 0.026

Table S688. Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WNT16 MUTATED	13	0	0
WNT16 WILD-TYPE	144	63	69

Figure S369. Get High-res Image Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WNT16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.42

Table S689. Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WNT16 MUTATED	2	2	2	2	0	0
WNT16 WILD-TYPE	31	17	57	37	16	45

'WNT16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.064 (Fisher's exact test), Q value = 0.18

Table S690. Gene #69: 'WNT16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WNT16 MUTATED	4	0	2	0	2	0
WNT16 WILD-TYPE	43	39	33	32	21	35

'SPTY2D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 0.76

Table S691. Gene #70: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SPTY2D1 MUTATED	3	9	2	1	0
SPTY2D1 WILD-TYPE	76	117	25	42	12

'SPTY2D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.26

Table S692. Gene #70: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SPTY2D1 MUTATED	3	8	0	2
SPTY2D1 WILD-TYPE	68	68	34	61

'SPTY2D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.099

Table S693. Gene #70: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SPTY2D1 MUTATED	3	5	3	0	3
SPTY2D1 WILD-TYPE	13	57	48	65	52

Figure S370. Get High-res Image Gene #70: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SPTY2D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.1

Table S694. Gene #70: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SPTY2D1 MUTATED	5	6	3	0
SPTY2D1 WILD-TYPE	93	38	47	57

Figure S371. Get High-res Image Gene #70: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SPTY2D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.11

Table S695. Gene #70: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SPTY2D1 MUTATED	7	0	2	2	1
SPTY2D1 WILD-TYPE	55	59	38	35	58

Figure S372. Get High-res Image Gene #70: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SPTY2D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.28

Table S696. Gene #70: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SPTY2D1 MUTATED	3	1	8
SPTY2D1 WILD-TYPE	103	53	89

'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S697. Gene #70: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SPTY2D1 MUTATED	9	2	4
SPTY2D1 WILD-TYPE	114	93	67

'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 0.8

Table S698. Gene #70: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SPTY2D1 MUTATED	10	2	3
SPTY2D1 WILD-TYPE	147	61	66

'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.29

Table S699. Gene #70: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SPTY2D1 MUTATED	2	1	5	5	0	0
SPTY2D1 WILD-TYPE	31	18	54	34	16	45

'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 0.12

Table S700. Gene #70: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SPTY2D1 MUTATED	6	0	4	0	2	1
SPTY2D1 WILD-TYPE	41	39	31	32	21	34

Figure S373. Get High-res Image Gene #70: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPSM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.29

Table S701. Gene #71: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPSM3 MUTATED	1	6	1	2	2
GPSM3 WILD-TYPE	78	120	26	41	10

'GPSM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 0.14

Table S702. Gene #71: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPSM3 MUTATED	1	7	0	1
GPSM3 WILD-TYPE	70	69	34	62

Figure S374. Get High-res Image Gene #71: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPSM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.31

Table S703. Gene #71: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GPSM3 MUTATED	0	3	1	0	4
GPSM3 WILD-TYPE	16	59	50	65	51

'GPSM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0985 (Fisher's exact test), Q value = 0.23

Table S704. Gene #71: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GPSM3 MUTATED	2	3	3	0
GPSM3 WILD-TYPE	96	41	47	57

'GPSM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 0.15

Table S705. Gene #71: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GPSM3 MUTATED	3	0	3	4	1
GPSM3 WILD-TYPE	59	59	37	33	58

Figure S375. Get High-res Image Gene #71: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPSM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.073

Table S706. Gene #71: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GPSM3 MUTATED	1	1	9
GPSM3 WILD-TYPE	105	53	88

Figure S376. Get High-res Image Gene #71: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPSM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.18

Table S707. Gene #71: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GPSM3 MUTATED	9	1	2
GPSM3 WILD-TYPE	114	94	69

'GPSM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0883 (Fisher's exact test), Q value = 0.22

Table S708. Gene #71: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GPSM3 MUTATED	10	0	2
GPSM3 WILD-TYPE	147	63	67

'GPSM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0466 (Fisher's exact test), Q value = 0.15

Table S709. Gene #71: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GPSM3 MUTATED	1	2	0	2	0	0
GPSM3 WILD-TYPE	32	17	59	37	16	45

Figure S377. Get High-res Image Gene #71: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GPSM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S710. Gene #71: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GPSM3 MUTATED	3	0	0	1	1	0
GPSM3 WILD-TYPE	44	39	35	31	22	35

'ZNF878 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.11

Table S711. Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF878 MUTATED	0	10	0	1	1
ZNF878 WILD-TYPE	79	116	27	42	11

Figure S378. Get High-res Image Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF878 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0051

Table S712. Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF878 MUTATED	0	9	0	0
ZNF878 WILD-TYPE	71	67	34	63

Figure S379. Get High-res Image Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF878 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 0.16

Table S713. Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZNF878 MUTATED	0	5	4	0	1
ZNF878 WILD-TYPE	16	57	47	65	54

'ZNF878 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0025

Table S714. Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZNF878 MUTATED	1	8	1	0
ZNF878 WILD-TYPE	97	36	49	57

Figure S380. Get High-res Image Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF878 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0069

Table S715. Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZNF878 MUTATED	8	0	0	1	0
ZNF878 WILD-TYPE	54	59	40	36	59

Figure S381. Get High-res Image Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF878 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.008

Table S716. Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZNF878 MUTATED	0	0	9
ZNF878 WILD-TYPE	106	54	88

Figure S382. Get High-res Image Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00226 (Fisher's exact test), Q value = 0.03

Table S717. Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZNF878 MUTATED	11	1	0
ZNF878 WILD-TYPE	112	94	71

Figure S383. Get High-res Image Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.1

Table S718. Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZNF878 MUTATED	11	1	0
ZNF878 WILD-TYPE	146	62	69

Figure S384. Get High-res Image Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.61

Table S719. Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZNF878 MUTATED	1	1	4	2	0	0
ZNF878 WILD-TYPE	32	18	55	37	16	45

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.49

Table S720. Gene #72: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZNF878 MUTATED	3	0	2	2	1	0
ZNF878 WILD-TYPE	44	39	33	30	22	35

'CCDC88A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.093

Table S721. Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CCDC88A MUTATED	1	15	1	1	1
CCDC88A WILD-TYPE	78	111	26	42	11

Figure S385. Get High-res Image Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC88A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00094 (Fisher's exact test), Q value = 0.018

Table S722. Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CCDC88A MUTATED	0	9	4	1
CCDC88A WILD-TYPE	71	67	30	62

Figure S386. Get High-res Image Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC88A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S723. Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CCDC88A MUTATED	1	7	2	1	6
CCDC88A WILD-TYPE	15	55	49	64	49

'CCDC88A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.1

Table S724. Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CCDC88A MUTATED	3	7	5	2
CCDC88A WILD-TYPE	95	37	45	55

Figure S387. Get High-res Image Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0019 (Fisher's exact test), Q value = 0.027

Table S725. Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CCDC88A MUTATED	11	2	3	3	0
CCDC88A WILD-TYPE	51	57	37	34	59

Figure S388. Get High-res Image Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.069

Table S726. Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CCDC88A MUTATED	7	0	12
CCDC88A WILD-TYPE	99	54	85

Figure S389. Get High-res Image Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S727. Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CCDC88A MUTATED	18	1	1
CCDC88A WILD-TYPE	105	94	70

Figure S390. Get High-res Image Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0034 (Fisher's exact test), Q value = 0.036

Table S728. Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CCDC88A MUTATED	18	1	1
CCDC88A WILD-TYPE	139	62	68

Figure S391. Get High-res Image Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.4

Table S729. Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CCDC88A MUTATED	2	2	7	1	0	1
CCDC88A WILD-TYPE	31	17	52	38	16	44

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0946 (Fisher's exact test), Q value = 0.23

Table S730. Gene #73: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CCDC88A MUTATED	5	1	5	1	1	0
CCDC88A WILD-TYPE	42	38	30	31	22	35

'FHDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00321 (Fisher's exact test), Q value = 0.035

Table S731. Gene #74: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FHDC1 MUTATED	0	13	1	0	1
FHDC1 WILD-TYPE	79	113	26	43	11

Figure S392. Get High-res Image Gene #74: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FHDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.076

Table S732. Gene #74: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FHDC1 MUTATED	0	6	3	1
FHDC1 WILD-TYPE	71	70	31	62

Figure S393. Get High-res Image Gene #74: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FHDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.34

Table S733. Gene #74: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FHDC1 MUTATED	0	7	1	2	4
FHDC1 WILD-TYPE	16	55	50	63	51

'FHDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.29

Table S734. Gene #74: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FHDC1 MUTATED	3	3	6	2
FHDC1 WILD-TYPE	95	41	44	55

'FHDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.11

Table S735. Gene #74: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FHDC1 MUTATED	7	2	2	4	0
FHDC1 WILD-TYPE	55	57	38	33	59

Figure S394. Get High-res Image Gene #74: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FHDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0803 (Fisher's exact test), Q value = 0.21

Table S736. Gene #74: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FHDC1 MUTATED	3	2	10
FHDC1 WILD-TYPE	103	52	87

'FHDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.083

Table S737. Gene #74: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FHDC1 MUTATED	11	4	0
FHDC1 WILD-TYPE	112	91	71

Figure S395. Get High-res Image Gene #74: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FHDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S738. Gene #74: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FHDC1 MUTATED	12	1	2
FHDC1 WILD-TYPE	145	62	67

'FHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0562 (Fisher's exact test), Q value = 0.17

Table S739. Gene #74: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FHDC1 MUTATED	0	2	2	4	1	0
FHDC1 WILD-TYPE	33	17	57	35	15	45

'FHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S740. Gene #74: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FHDC1 MUTATED	3	0	1	1	3	1
FHDC1 WILD-TYPE	44	39	34	31	20	34

'ARHGAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00593 (Fisher's exact test), Q value = 0.05

Table S741. Gene #75: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARHGAP5 MUTATED	0	12	2	1	2
ARHGAP5 WILD-TYPE	79	114	25	42	10

Figure S396. Get High-res Image Gene #75: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.085

Table S742. Gene #75: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARHGAP5 MUTATED	0	8	3	3
ARHGAP5 WILD-TYPE	71	68	31	60

Figure S397. Get High-res Image Gene #75: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 0.93

Table S743. Gene #75: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ARHGAP5 MUTATED	0	5	3	3	3
ARHGAP5 WILD-TYPE	16	57	48	62	52

'ARHGAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.52

Table S744. Gene #75: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ARHGAP5 MUTATED	5	5	2	2
ARHGAP5 WILD-TYPE	93	39	48	55

'ARHGAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00534 (Fisher's exact test), Q value = 0.047

Table S745. Gene #75: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ARHGAP5 MUTATED	9	2	1	3	0
ARHGAP5 WILD-TYPE	53	57	39	34	59

Figure S398. Get High-res Image Gene #75: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S746. Gene #75: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ARHGAP5 MUTATED	3	3	9
ARHGAP5 WILD-TYPE	103	51	88

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S747. Gene #75: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ARHGAP5 MUTATED	11	5	1
ARHGAP5 WILD-TYPE	112	90	70

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.37

Table S748. Gene #75: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ARHGAP5 MUTATED	13	2	2
ARHGAP5 WILD-TYPE	144	61	67

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.19

Table S749. Gene #75: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ARHGAP5 MUTATED	1	3	1	3	2	1
ARHGAP5 WILD-TYPE	32	16	58	36	14	44

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.46

Table S750. Gene #75: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ARHGAP5 MUTATED	5	1	1	0	2	2
ARHGAP5 WILD-TYPE	42	38	34	32	21	33

'CRYGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.25

Table S751. Gene #76: 'CRYGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CRYGA MUTATED	0	7	1	1	1
CRYGA WILD-TYPE	79	119	26	42	11

'CRYGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.12

Table S752. Gene #76: 'CRYGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CRYGA MUTATED	0	6	2	1
CRYGA WILD-TYPE	71	70	32	62

Figure S399. Get High-res Image Gene #76: 'CRYGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CRYGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.23

Table S753. Gene #76: 'CRYGA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CRYGA MUTATED	1	2	4	0	1
CRYGA WILD-TYPE	15	60	47	65	54

'CRYGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0117 (Fisher's exact test), Q value = 0.072

Table S754. Gene #76: 'CRYGA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CRYGA MUTATED	2	5	1	0
CRYGA WILD-TYPE	96	39	49	57

Figure S400. Get High-res Image Gene #76: 'CRYGA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CRYGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S755. Gene #76: 'CRYGA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CRYGA MUTATED	4	1	1	2	0
CRYGA WILD-TYPE	58	58	39	35	59

'CRYGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.088 (Fisher's exact test), Q value = 0.22

Table S756. Gene #76: 'CRYGA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CRYGA MUTATED	1	1	6
CRYGA WILD-TYPE	105	53	91

'CRYGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.41

Table S757. Gene #76: 'CRYGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CRYGA MUTATED	7	2	1
CRYGA WILD-TYPE	116	93	70

'CRYGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.28

Table S758. Gene #76: 'CRYGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CRYGA MUTATED	8	2	0
CRYGA WILD-TYPE	149	61	69

'CRYGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S759. Gene #76: 'CRYGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CRYGA MUTATED	1	1	2	1	0	2
CRYGA WILD-TYPE	32	18	57	38	16	43

'CRYGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 0.93

Table S760. Gene #76: 'CRYGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CRYGA MUTATED	2	2	1	1	1	0
CRYGA WILD-TYPE	45	37	34	31	22	35

'CDC14A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.074

Table S761. Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDC14A MUTATED	0	13	1	1	0
CDC14A WILD-TYPE	79	113	26	42	12

Figure S401. Get High-res Image Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDC14A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00561 (Fisher's exact test), Q value = 0.048

Table S762. Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDC14A MUTATED	0	8	2	1
CDC14A WILD-TYPE	71	68	32	62

Figure S402. Get High-res Image Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDC14A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 0.12

Table S763. Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CDC14A MUTATED	1	2	6	0	3
CDC14A WILD-TYPE	15	60	45	65	52

Figure S403. Get High-res Image Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDC14A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00271 (Fisher's exact test), Q value = 0.032

Table S764. Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CDC14A MUTATED	4	7	1	0
CDC14A WILD-TYPE	94	37	49	57

Figure S404. Get High-res Image Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00301 (Fisher's exact test), Q value = 0.034

Table S765. Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CDC14A MUTATED	7	1	1	5	0
CDC14A WILD-TYPE	55	58	39	32	59

Figure S405. Get High-res Image Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDC14A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0038 (Fisher's exact test), Q value = 0.038

Table S766. Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CDC14A MUTATED	3	0	11
CDC14A WILD-TYPE	103	54	86

Figure S406. Get High-res Image Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S767. Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CDC14A MUTATED	15	0	0
CDC14A WILD-TYPE	108	95	71

Figure S407. Get High-res Image Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00061 (Fisher's exact test), Q value = 0.013

Table S768. Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CDC14A MUTATED	15	0	0
CDC14A WILD-TYPE	142	63	69

Figure S408. Get High-res Image Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.36

Table S769. Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CDC14A MUTATED	2	0	4	4	0	0
CDC14A WILD-TYPE	31	19	55	35	16	45

'CDC14A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.33

Table S770. Gene #77: 'CDC14A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CDC14A MUTATED	4	0	3	2	1	0
CDC14A WILD-TYPE	43	39	32	30	22	35

'BCORL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.01

Table S771. Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BCORL1 MUTATED	1	17	0	0	2
BCORL1 WILD-TYPE	78	109	27	43	10

Figure S409. Get High-res Image Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCORL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00192 (Fisher's exact test), Q value = 0.027

Table S772. Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BCORL1 MUTATED	0	11	3	3
BCORL1 WILD-TYPE	71	65	31	60

Figure S410. Get High-res Image Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCORL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.074

Table S773. Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BCORL1 MUTATED	0	7	3	0	7
BCORL1 WILD-TYPE	16	55	48	65	48

Figure S411. Get High-res Image Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BCORL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S774. Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BCORL1 MUTATED	1	9	6	1
BCORL1 WILD-TYPE	97	35	44	56

Figure S412. Get High-res Image Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S775. Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BCORL1 MUTATED	11	0	1	6	0
BCORL1 WILD-TYPE	51	59	39	31	59

Figure S413. Get High-res Image Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00183 (Fisher's exact test), Q value = 0.027

Table S776. Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BCORL1 MUTATED	3	1	14
BCORL1 WILD-TYPE	103	53	83

Figure S414. Get High-res Image Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029

Table S777. Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BCORL1 MUTATED	18	1	1
BCORL1 WILD-TYPE	105	94	70

Figure S415. Get High-res Image Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00038 (Fisher's exact test), Q value = 0.01

Table S778. Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BCORL1 MUTATED	19	1	0
BCORL1 WILD-TYPE	138	62	69

Figure S416. Get High-res Image Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.089 (Fisher's exact test), Q value = 0.22

Table S779. Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BCORL1 MUTATED	1	2	7	3	0	0
BCORL1 WILD-TYPE	32	17	52	36	16	45

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00354 (Fisher's exact test), Q value = 0.037

Table S780. Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BCORL1 MUTATED	5	0	5	0	3	0
BCORL1 WILD-TYPE	42	39	30	32	20	35

Figure S417. Get High-res Image Gene #78: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRRG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.17

Table S781. Gene #79: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRRG3 MUTATED	0	8	0	0	0
PRRG3 WILD-TYPE	79	118	27	43	12

'PRRG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0881 (Fisher's exact test), Q value = 0.22

Table S782. Gene #79: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRRG3 MUTATED	0	1	2	3
PRRG3 WILD-TYPE	71	75	32	60

'PRRG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.38

Table S783. Gene #79: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PRRG3 MUTATED	1	3	2	0	1
PRRG3 WILD-TYPE	15	59	49	65	54

'PRRG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0499 (Fisher's exact test), Q value = 0.16

Table S784. Gene #79: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PRRG3 MUTATED	2	4	1	0
PRRG3 WILD-TYPE	96	40	49	57

Figure S418. Get High-res Image Gene #79: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PRRG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 0.18

Table S785. Gene #79: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PRRG3 MUTATED	4	0	1	1	0
PRRG3 WILD-TYPE	58	59	39	36	59

'PRRG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.75

Table S786. Gene #79: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PRRG3 MUTATED	3	0	3
PRRG3 WILD-TYPE	103	54	94

'PRRG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00251 (Fisher's exact test), Q value = 0.031

Table S787. Gene #79: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PRRG3 MUTATED	8	0	0
PRRG3 WILD-TYPE	115	95	71

Figure S419. Get High-res Image Gene #79: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRRG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.31

Table S788. Gene #79: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PRRG3 MUTATED	7	1	0
PRRG3 WILD-TYPE	150	62	69

'PRRG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.46

Table S789. Gene #79: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PRRG3 MUTATED	0	0	4	1	0	0
PRRG3 WILD-TYPE	33	19	55	38	16	45

'PRRG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S790. Gene #79: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PRRG3 MUTATED	1	0	3	0	1	0
PRRG3 WILD-TYPE	46	39	32	32	22	35

'OPTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S791. Gene #80: 'OPTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OPTN MUTATED	0	7	1	1	0
OPTN WILD-TYPE	79	119	26	42	12

'OPTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.31

Table S792. Gene #80: 'OPTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OPTN MUTATED	0	4	0	2
OPTN WILD-TYPE	71	72	34	61

'OPTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0857 (Fisher's exact test), Q value = 0.21

Table S793. Gene #80: 'OPTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OPTN MUTATED	1	5	2	0	1
OPTN WILD-TYPE	15	57	49	65	54

'OPTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0381 (Fisher's exact test), Q value = 0.14

Table S794. Gene #80: 'OPTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OPTN MUTATED	2	4	3	0
OPTN WILD-TYPE	96	40	47	57

Figure S420. Get High-res Image Gene #80: 'OPTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OPTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.074

Table S795. Gene #80: 'OPTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OPTN MUTATED	3	0	2	4	0
OPTN WILD-TYPE	59	59	38	33	59

Figure S421. Get High-res Image Gene #80: 'OPTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OPTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.68

Table S796. Gene #80: 'OPTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OPTN MUTATED	3	1	5
OPTN WILD-TYPE	103	53	92

'OPTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0779 (Fisher's exact test), Q value = 0.2

Table S797. Gene #80: 'OPTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OPTN MUTATED	7	2	0
OPTN WILD-TYPE	116	93	71

'OPTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.6

Table S798. Gene #80: 'OPTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OPTN MUTATED	7	1	1
OPTN WILD-TYPE	150	62	68

'OPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.59

Table S799. Gene #80: 'OPTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OPTN MUTATED	0	0	3	2	0	0
OPTN WILD-TYPE	33	19	56	37	16	45

'OPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.67

Table S800. Gene #80: 'OPTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OPTN MUTATED	1	0	2	0	1	1
OPTN WILD-TYPE	46	39	33	32	22	34

'RBM43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 0.9

Table S801. Gene #81: 'RBM43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RBM43 MUTATED	2	6	0	1	0
RBM43 WILD-TYPE	77	120	27	42	12

'RBM43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.68

Table S802. Gene #81: 'RBM43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RBM43 MUTATED	2	1	2	2
RBM43 WILD-TYPE	69	75	32	61

'RBM43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.62

Table S803. Gene #81: 'RBM43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RBM43 MUTATED	1	4	1	1	2
RBM43 WILD-TYPE	15	58	50	64	53

'RBM43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.72

Table S804. Gene #81: 'RBM43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RBM43 MUTATED	2	2	3	2
RBM43 WILD-TYPE	96	42	47	55

'RBM43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.63

Table S805. Gene #81: 'RBM43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RBM43 MUTATED	4	1	0	1	2
RBM43 WILD-TYPE	58	58	40	36	57

'RBM43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.14

Table S806. Gene #81: 'RBM43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RBM43 MUTATED	7	0	1
RBM43 WILD-TYPE	99	54	96

Figure S422. Get High-res Image Gene #81: 'RBM43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RBM43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.13

Table S807. Gene #81: 'RBM43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RBM43 MUTATED	7	0	2
RBM43 WILD-TYPE	116	95	69

Figure S423. Get High-res Image Gene #81: 'RBM43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RBM43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 0.94

Table S808. Gene #81: 'RBM43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RBM43 MUTATED	6	1	2
RBM43 WILD-TYPE	151	62	67

'RBM43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.66

Table S809. Gene #81: 'RBM43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RBM43 MUTATED	1	0	3	1	1	0
RBM43 WILD-TYPE	32	19	56	38	15	45

'RBM43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.41

Table S810. Gene #81: 'RBM43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RBM43 MUTATED	1	0	2	0	2	1
RBM43 WILD-TYPE	46	39	33	32	21	34

'ZC3H18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S811. Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZC3H18 MUTATED	3	12	1	0	1
ZC3H18 WILD-TYPE	76	114	26	43	11

'ZC3H18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.1

Table S812. Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZC3H18 MUTATED	4	9	2	0
ZC3H18 WILD-TYPE	67	67	32	63

Figure S424. Get High-res Image Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZC3H18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.13

Table S813. Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZC3H18 MUTATED	0	7	2	0	4
ZC3H18 WILD-TYPE	16	55	49	65	51

Figure S425. Get High-res Image Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZC3H18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.098

Table S814. Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZC3H18 MUTATED	2	5	5	1
ZC3H18 WILD-TYPE	96	39	45	56

Figure S426. Get High-res Image Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZC3H18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00569 (Fisher's exact test), Q value = 0.049

Table S815. Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZC3H18 MUTATED	7	0	3	5	1
ZC3H18 WILD-TYPE	55	59	37	32	58

Figure S427. Get High-res Image Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZC3H18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00373 (Fisher's exact test), Q value = 0.038

Table S816. Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZC3H18 MUTATED	4	0	12
ZC3H18 WILD-TYPE	102	54	85

Figure S428. Get High-res Image Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00953 (Fisher's exact test), Q value = 0.065

Table S817. Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZC3H18 MUTATED	14	2	2
ZC3H18 WILD-TYPE	109	93	69

Figure S429. Get High-res Image Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0904 (Fisher's exact test), Q value = 0.22

Table S818. Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZC3H18 MUTATED	14	1	3
ZC3H18 WILD-TYPE	143	62	66

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0697 (Fisher's exact test), Q value = 0.19

Table S819. Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZC3H18 MUTATED	4	3	4	2	0	0
ZC3H18 WILD-TYPE	29	16	55	37	16	45

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0665 (Fisher's exact test), Q value = 0.19

Table S820. Gene #82: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZC3H18 MUTATED	7	0	2	1	2	1
ZC3H18 WILD-TYPE	40	39	33	31	21	34

'CTSC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.089

Table S821. Gene #83: 'CTSC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CTSC MUTATED	0	10	0	0	0
CTSC WILD-TYPE	79	116	27	43	12

Figure S430. Get High-res Image Gene #83: 'CTSC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTSC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.099

Table S822. Gene #83: 'CTSC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CTSC MUTATED	0	5	1	0
CTSC WILD-TYPE	71	71	33	63

Figure S431. Get High-res Image Gene #83: 'CTSC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTSC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.75

Table S823. Gene #83: 'CTSC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CTSC MUTATED	0	1	2	1	3
CTSC WILD-TYPE	16	61	49	64	52

'CTSC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0696 (Fisher's exact test), Q value = 0.19

Table S824. Gene #83: 'CTSC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CTSC MUTATED	1	4	1	1
CTSC WILD-TYPE	97	40	49	56

'CTSC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.13

Table S825. Gene #83: 'CTSC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CTSC MUTATED	6	2	0	1	0
CTSC WILD-TYPE	56	57	40	36	59

Figure S432. Get High-res Image Gene #83: 'CTSC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTSC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0984 (Fisher's exact test), Q value = 0.23

Table S826. Gene #83: 'CTSC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CTSC MUTATED	1	2	6
CTSC WILD-TYPE	105	52	91

'CTSC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0445 (Fisher's exact test), Q value = 0.15

Table S827. Gene #83: 'CTSC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CTSC MUTATED	8	2	0
CTSC WILD-TYPE	115	93	71

Figure S433. Get High-res Image Gene #83: 'CTSC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CTSC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.29

Table S828. Gene #83: 'CTSC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CTSC MUTATED	8	2	0
CTSC WILD-TYPE	149	61	69

'CTSC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.36

Table S829. Gene #83: 'CTSC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CTSC MUTATED	1	1	0	3	0	1
CTSC WILD-TYPE	32	18	59	36	16	44

'CTSC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.52

Table S830. Gene #83: 'CTSC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CTSC MUTATED	2	1	0	1	2	0
CTSC WILD-TYPE	45	38	35	31	21	35

'RHOQ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.63

Table S831. Gene #84: 'RHOQ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RHOQ MUTATED	0	4	0	1	0
RHOQ WILD-TYPE	79	122	27	42	12

'RHOQ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S832. Gene #84: 'RHOQ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RHOQ MUTATED	0	3	0	0
RHOQ WILD-TYPE	71	73	34	63

'RHOQ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.59

Table S833. Gene #84: 'RHOQ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RHOQ MUTATED	0	0	0	1	2
RHOQ WILD-TYPE	16	62	51	64	53

'RHOQ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 0.85

Table S834. Gene #84: 'RHOQ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RHOQ MUTATED	1	1	0	1
RHOQ WILD-TYPE	97	43	50	56

'RHOQ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S835. Gene #84: 'RHOQ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RHOQ MUTATED	2	1	1	1	0
RHOQ WILD-TYPE	60	58	39	36	59

'RHOQ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S836. Gene #84: 'RHOQ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RHOQ MUTATED	1	0	4
RHOQ WILD-TYPE	105	54	93

'RHOQ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S837. Gene #84: 'RHOQ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RHOQ MUTATED	4	0	1
RHOQ WILD-TYPE	119	95	70

'RHOQ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S838. Gene #84: 'RHOQ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RHOQ MUTATED	4	0	1
RHOQ WILD-TYPE	153	63	68

'RHOQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0996 (Fisher's exact test), Q value = 0.23

Table S839. Gene #84: 'RHOQ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RHOQ MUTATED	0	1	0	2	0	0
RHOQ WILD-TYPE	33	18	59	37	16	45

'RHOQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0851 (Fisher's exact test), Q value = 0.21

Table S840. Gene #84: 'RHOQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RHOQ MUTATED	3	0	0	0	0	0
RHOQ WILD-TYPE	44	39	35	32	23	35

'RALGAPB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0724 (Fisher's exact test), Q value = 0.19

Table S841. Gene #85: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RALGAPB MUTATED	3	11	2	0	2
RALGAPB WILD-TYPE	76	115	25	43	10

'RALGAPB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S842. Gene #85: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RALGAPB MUTATED	3	8	2	1
RALGAPB WILD-TYPE	68	68	32	62

'RALGAPB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.11

Table S843. Gene #85: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RALGAPB MUTATED	2	8	4	1	1
RALGAPB WILD-TYPE	14	54	47	64	54

Figure S434. Get High-res Image Gene #85: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RALGAPB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.009

Table S844. Gene #85: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RALGAPB MUTATED	2	9	4	1
RALGAPB WILD-TYPE	96	35	46	56

Figure S435. Get High-res Image Gene #85: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RALGAPB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.6

Table S845. Gene #85: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RALGAPB MUTATED	6	2	3	1	2
RALGAPB WILD-TYPE	56	57	37	36	57

'RALGAPB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.3

Table S846. Gene #85: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RALGAPB MUTATED	3	2	9
RALGAPB WILD-TYPE	103	52	88

'RALGAPB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.35

Table S847. Gene #85: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RALGAPB MUTATED	11	3	4
RALGAPB WILD-TYPE	112	92	67

'RALGAPB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.46

Table S848. Gene #85: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RALGAPB MUTATED	13	3	2
RALGAPB WILD-TYPE	144	60	67

'RALGAPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.68

Table S849. Gene #85: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RALGAPB MUTATED	4	1	3	1	0	2
RALGAPB WILD-TYPE	29	18	56	38	16	43

'RALGAPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 0.87

Table S850. Gene #85: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RALGAPB MUTATED	4	2	2	2	0	1
RALGAPB WILD-TYPE	43	37	33	30	23	34

'CR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0914 (Fisher's exact test), Q value = 0.22

Table S851. Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CR2 MUTATED	4	13	0	1	2
CR2 WILD-TYPE	75	113	27	42	10

'CR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 0.22

Table S852. Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CR2 MUTATED	3	8	5	2
CR2 WILD-TYPE	68	68	29	61

'CR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0471 (Fisher's exact test), Q value = 0.15

Table S853. Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CR2 MUTATED	2	6	3	0	4
CR2 WILD-TYPE	14	56	48	65	51

Figure S436. Get High-res Image Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0198 (Fisher's exact test), Q value = 0.095

Table S854. Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CR2 MUTATED	5	6	4	0
CR2 WILD-TYPE	93	38	46	57

Figure S437. Get High-res Image Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00119 (Fisher's exact test), Q value = 0.02

Table S855. Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CR2 MUTATED	12	0	3	2	3
CR2 WILD-TYPE	50	59	37	35	56

Figure S438. Get High-res Image Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00259 (Fisher's exact test), Q value = 0.032

Table S856. Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CR2 MUTATED	6	0	14
CR2 WILD-TYPE	100	54	83

Figure S439. Get High-res Image Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S857. Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CR2 MUTATED	16	0	4
CR2 WILD-TYPE	107	95	67

Figure S440. Get High-res Image Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0505 (Fisher's exact test), Q value = 0.16

Table S858. Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CR2 MUTATED	16	1	3
CR2 WILD-TYPE	141	62	66

'CR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.27

Table S859. Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CR2 MUTATED	4	2	3	4	1	0
CR2 WILD-TYPE	29	17	56	35	15	45

'CR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.32

Table S860. Gene #86: 'CR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CR2 MUTATED	6	0	3	2	2	1
CR2 WILD-TYPE	41	39	32	30	21	34

'MSH6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.082

Table S861. Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MSH6 MUTATED	0	11	3	4	1
MSH6 WILD-TYPE	79	115	24	39	11

Figure S441. Get High-res Image Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MSH6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.1

Table S862. Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MSH6 MUTATED	2	10	2	1
MSH6 WILD-TYPE	69	66	32	62

Figure S442. Get High-res Image Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MSH6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.57

Table S863. Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MSH6 MUTATED	1	7	5	2	4
MSH6 WILD-TYPE	15	55	46	63	51

'MSH6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0036 (Fisher's exact test), Q value = 0.037

Table S864. Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MSH6 MUTATED	2	8	6	3
MSH6 WILD-TYPE	96	36	44	54

Figure S443. Get High-res Image Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MSH6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.082

Table S865. Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MSH6 MUTATED	6	3	2	6	0
MSH6 WILD-TYPE	56	56	38	31	59

Figure S444. Get High-res Image Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MSH6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00653 (Fisher's exact test), Q value = 0.052

Table S866. Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MSH6 MUTATED	5	0	12
MSH6 WILD-TYPE	101	54	85

Figure S445. Get High-res Image Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MSH6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.31

Table S867. Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MSH6 MUTATED	12	5	2
MSH6 WILD-TYPE	111	90	69

'MSH6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.11

Table S868. Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MSH6 MUTATED	16	2	1
MSH6 WILD-TYPE	141	61	68

Figure S446. Get High-res Image Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.5

Table S869. Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MSH6 MUTATED	1	3	3	4	0	2
MSH6 WILD-TYPE	32	16	56	35	16	43

'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.5

Table S870. Gene #87: 'MSH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MSH6 MUTATED	5	2	3	1	2	0
MSH6 WILD-TYPE	42	37	32	31	21	35

'ZFHX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0033

Table S871. Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZFHX4 MUTATED	6	36	1	4	5
ZFHX4 WILD-TYPE	73	90	26	39	7

Figure S447. Get High-res Image Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZFHX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00081 (Fisher's exact test), Q value = 0.016

Table S872. Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZFHX4 MUTATED	6	22	8	5
ZFHX4 WILD-TYPE	65	54	26	58

Figure S448. Get High-res Image Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFHX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0913 (Fisher's exact test), Q value = 0.22

Table S873. Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZFHX4 MUTATED	2	17	11	6	9
ZFHX4 WILD-TYPE	14	45	40	59	46

'ZFHX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00194 (Fisher's exact test), Q value = 0.027

Table S874. Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZFHX4 MUTATED	15	16	10	4
ZFHX4 WILD-TYPE	83	28	40	53

Figure S449. Get High-res Image Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZFHX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S875. Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZFHX4 MUTATED	27	4	5	7	5
ZFHX4 WILD-TYPE	35	55	35	30	54

Figure S450. Get High-res Image Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZFHX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00098 (Fisher's exact test), Q value = 0.018

Table S876. Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZFHX4 MUTATED	17	3	28
ZFHX4 WILD-TYPE	89	51	69

Figure S451. Get High-res Image Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S877. Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZFHX4 MUTATED	37	9	7
ZFHX4 WILD-TYPE	86	86	64

Figure S452. Get High-res Image Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00099 (Fisher's exact test), Q value = 0.018

Table S878. Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZFHX4 MUTATED	41	5	7
ZFHX4 WILD-TYPE	116	58	62

Figure S453. Get High-res Image Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.075

Table S879. Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZFHX4 MUTATED	5	3	15	10	3	1
ZFHX4 WILD-TYPE	28	16	44	29	13	44

Figure S454. Get High-res Image Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0051

Table S880. Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZFHX4 MUTATED	16	0	8	4	6	3
ZFHX4 WILD-TYPE	31	39	27	28	17	32

Figure S455. Get High-res Image Gene #88: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC10A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.33

Table S881. Gene #89: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC10A6 MUTATED	0	6	1	0	0
SLC10A6 WILD-TYPE	79	120	26	43	12

'SLC10A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 0.16

Table S882. Gene #89: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC10A6 MUTATED	0	5	0	1
SLC10A6 WILD-TYPE	71	71	34	62

'SLC10A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.49

Table S883. Gene #89: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC10A6 MUTATED	1	2	2	0	2
SLC10A6 WILD-TYPE	15	60	49	65	53

'SLC10A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0501 (Fisher's exact test), Q value = 0.16

Table S884. Gene #89: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC10A6 MUTATED	2	4	1	0
SLC10A6 WILD-TYPE	96	40	49	57

'SLC10A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00891 (Fisher's exact test), Q value = 0.062

Table S885. Gene #89: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC10A6 MUTATED	6	0	1	1	0
SLC10A6 WILD-TYPE	56	59	39	36	59

Figure S456. Get High-res Image Gene #89: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC10A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0756 (Fisher's exact test), Q value = 0.2

Table S886. Gene #89: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC10A6 MUTATED	2	0	6
SLC10A6 WILD-TYPE	104	54	91

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.1

Table S887. Gene #89: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC10A6 MUTATED	7	0	1
SLC10A6 WILD-TYPE	116	95	70

Figure S457. Get High-res Image Gene #89: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0434 (Fisher's exact test), Q value = 0.15

Table S888. Gene #89: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC10A6 MUTATED	8	0	0
SLC10A6 WILD-TYPE	149	63	69

Figure S458. Get High-res Image Gene #89: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.34

Table S889. Gene #89: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC10A6 MUTATED	3	1	1	1	0	0
SLC10A6 WILD-TYPE	30	18	58	38	16	45

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.32

Table S890. Gene #89: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC10A6 MUTATED	4	0	1	1	0	0
SLC10A6 WILD-TYPE	43	39	34	31	23	35

'LEMD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.53

Table S891. Gene #90: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LEMD1 MUTATED	0	2	1	0	0
LEMD1 WILD-TYPE	79	124	26	43	12

'LEMD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0359 (Fisher's exact test), Q value = 0.13

Table S892. Gene #90: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LEMD1 MUTATED	0	4	0	0
LEMD1 WILD-TYPE	71	72	34	63

Figure S459. Get High-res Image Gene #90: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LEMD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 0.83

Table S893. Gene #90: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LEMD1 MUTATED	0	1	1	0	1
LEMD1 WILD-TYPE	16	61	50	65	54

'LEMD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00492 (Fisher's exact test), Q value = 0.044

Table S894. Gene #90: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LEMD1 MUTATED	0	3	0	0
LEMD1 WILD-TYPE	98	41	50	57

Figure S460. Get High-res Image Gene #90: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LEMD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.42

Table S895. Gene #90: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LEMD1 MUTATED	2	0	0	1	0
LEMD1 WILD-TYPE	60	59	40	36	59

'LEMD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S896. Gene #90: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LEMD1 MUTATED	0	0	3
LEMD1 WILD-TYPE	106	54	94

'LEMD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0913 (Fisher's exact test), Q value = 0.22

Table S897. Gene #90: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LEMD1 MUTATED	4	0	0
LEMD1 WILD-TYPE	119	95	71

'LEMD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.56

Table S898. Gene #90: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LEMD1 MUTATED	4	0	0
LEMD1 WILD-TYPE	153	63	69

'LEMD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.57

Table S899. Gene #90: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LEMD1 MUTATED	1	1	2	0	0	0
LEMD1 WILD-TYPE	32	18	57	39	16	45

'LEMD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.4

Table S900. Gene #90: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LEMD1 MUTATED	3	0	1	0	0	0
LEMD1 WILD-TYPE	44	39	34	32	23	35

'KIF13A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.44

Table S901. Gene #91: 'KIF13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIF13A MUTATED	2	12	2	2	1
KIF13A WILD-TYPE	77	114	25	41	11

'KIF13A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 0.18

Table S902. Gene #91: 'KIF13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIF13A MUTATED	2	7	4	1
KIF13A WILD-TYPE	69	69	30	62

'KIF13A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.32

Table S903. Gene #91: 'KIF13A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIF13A MUTATED	1	7	5	1	5
KIF13A WILD-TYPE	15	55	46	64	50

'KIF13A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00239 (Fisher's exact test), Q value = 0.031

Table S904. Gene #91: 'KIF13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIF13A MUTATED	4	10	2	3
KIF13A WILD-TYPE	94	34	48	54

Figure S461. Get High-res Image Gene #91: 'KIF13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIF13A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.009

Table S905. Gene #91: 'KIF13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIF13A MUTATED	12	1	0	4	2
KIF13A WILD-TYPE	50	58	40	33	57

Figure S462. Get High-res Image Gene #91: 'KIF13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIF13A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.24

Table S906. Gene #91: 'KIF13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIF13A MUTATED	7	1	11
KIF13A WILD-TYPE	99	53	86

'KIF13A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00223 (Fisher's exact test), Q value = 0.03

Table S907. Gene #91: 'KIF13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIF13A MUTATED	16	3	1
KIF13A WILD-TYPE	107	92	70

Figure S463. Get High-res Image Gene #91: 'KIF13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIF13A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.19

Table S908. Gene #91: 'KIF13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIF13A MUTATED	16	2	2
KIF13A WILD-TYPE	141	61	67

'KIF13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.74

Table S909. Gene #91: 'KIF13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIF13A MUTATED	3	2	4	1	0	2
KIF13A WILD-TYPE	30	17	55	38	16	43

'KIF13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.59

Table S910. Gene #91: 'KIF13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIF13A MUTATED	4	1	3	0	2	2
KIF13A WILD-TYPE	43	38	32	32	21	33

'DDX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0408 (Fisher's exact test), Q value = 0.14

Table S911. Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DDX17 MUTATED	0	10	0	1	0
DDX17 WILD-TYPE	79	116	27	42	12

Figure S464. Get High-res Image Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.13

Table S912. Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DDX17 MUTATED	0	6	1	1
DDX17 WILD-TYPE	71	70	33	62

Figure S465. Get High-res Image Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DDX17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.12

Table S913. Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DDX17 MUTATED	0	7	2	0	2
DDX17 WILD-TYPE	16	55	49	65	53

Figure S466. Get High-res Image Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DDX17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 0.12

Table S914. Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DDX17 MUTATED	3	5	3	0
DDX17 WILD-TYPE	95	39	47	57

Figure S467. Get High-res Image Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.12

Table S915. Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DDX17 MUTATED	4	0	2	3	0
DDX17 WILD-TYPE	58	59	38	34	59

Figure S468. Get High-res Image Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DDX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.42

Table S916. Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DDX17 MUTATED	2	1	6
DDX17 WILD-TYPE	104	53	91

'DDX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.31

Table S917. Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DDX17 MUTATED	8	2	1
DDX17 WILD-TYPE	115	93	70

'DDX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0455 (Fisher's exact test), Q value = 0.15

Table S918. Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DDX17 MUTATED	10	0	1
DDX17 WILD-TYPE	147	63	68

Figure S469. Get High-res Image Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.35

Table S919. Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DDX17 MUTATED	1	0	2	4	0	0
DDX17 WILD-TYPE	32	19	57	35	16	45

'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.57

Table S920. Gene #92: 'DDX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DDX17 MUTATED	3	0	2	0	1	1
DDX17 WILD-TYPE	44	39	33	32	22	34

'RTN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.11

Table S921. Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RTN2 MUTATED	0	9	1	0	1
RTN2 WILD-TYPE	79	117	26	43	11

Figure S470. Get High-res Image Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RTN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.13

Table S922. Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RTN2 MUTATED	0	6	1	1
RTN2 WILD-TYPE	71	70	33	62

Figure S471. Get High-res Image Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RTN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.35

Table S923. Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RTN2 MUTATED	1	4	3	0	3
RTN2 WILD-TYPE	15	58	48	65	52

'RTN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0563 (Fisher's exact test), Q value = 0.17

Table S924. Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RTN2 MUTATED	2	5	3	1
RTN2 WILD-TYPE	96	39	47	56

'RTN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.1

Table S925. Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RTN2 MUTATED	4	2	0	4	0
RTN2 WILD-TYPE	58	57	40	33	59

Figure S472. Get High-res Image Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RTN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.46

Table S926. Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RTN2 MUTATED	2	2	6
RTN2 WILD-TYPE	104	52	91

'RTN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.14

Table S927. Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RTN2 MUTATED	9	1	1
RTN2 WILD-TYPE	114	94	70

Figure S473. Get High-res Image Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RTN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0445 (Fisher's exact test), Q value = 0.15

Table S928. Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RTN2 MUTATED	10	0	1
RTN2 WILD-TYPE	147	63	68

Figure S474. Get High-res Image Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RTN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S929. Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RTN2 MUTATED	0	2	4	1	0	0
RTN2 WILD-TYPE	33	17	55	38	16	45

'RTN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.53

Table S930. Gene #93: 'RTN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RTN2 MUTATED	3	0	2	1	1	0
RTN2 WILD-TYPE	44	39	33	31	22	35

'PAX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S931. Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PAX2 MUTATED	0	7	1	1	0
PAX2 WILD-TYPE	79	119	26	42	12

'PAX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.13

Table S932. Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PAX2 MUTATED	0	4	3	1
PAX2 WILD-TYPE	71	72	31	62

Figure S475. Get High-res Image Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 0.14

Table S933. Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PAX2 MUTATED	1	2	5	0	1
PAX2 WILD-TYPE	15	60	46	65	54

Figure S476. Get High-res Image Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PAX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0055

Table S934. Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PAX2 MUTATED	1	7	1	0
PAX2 WILD-TYPE	97	37	49	57

Figure S477. Get High-res Image Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PAX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00282 (Fisher's exact test), Q value = 0.033

Table S935. Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PAX2 MUTATED	6	0	0	2	0
PAX2 WILD-TYPE	56	59	40	35	59

Figure S478. Get High-res Image Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PAX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0748 (Fisher's exact test), Q value = 0.2

Table S936. Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PAX2 MUTATED	2	0	6
PAX2 WILD-TYPE	104	54	91

'PAX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.098

Table S937. Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PAX2 MUTATED	8	1	0
PAX2 WILD-TYPE	115	94	71

Figure S479. Get High-res Image Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PAX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S938. Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PAX2 MUTATED	8	1	0
PAX2 WILD-TYPE	149	62	69

'PAX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.72

Table S939. Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PAX2 MUTATED	0	0	4	1	0	1
PAX2 WILD-TYPE	33	19	55	38	16	44

'PAX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.092

Table S940. Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PAX2 MUTATED	0	1	4	0	1	0
PAX2 WILD-TYPE	47	38	31	32	22	35

Figure S480. Get High-res Image Gene #94: 'PAX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA0240 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S941. Gene #95: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA0240 MUTATED	1	9	1	0	1
KIAA0240 WILD-TYPE	78	117	26	43	11

'KIAA0240 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.69

Table S942. Gene #95: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA0240 MUTATED	1	3	2	3
KIAA0240 WILD-TYPE	70	73	32	60

'KIAA0240 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.37

Table S943. Gene #95: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIAA0240 MUTATED	1	4	2	0	2
KIAA0240 WILD-TYPE	15	58	49	65	53

'KIAA0240 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0374 (Fisher's exact test), Q value = 0.14

Table S944. Gene #95: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIAA0240 MUTATED	2	4	3	0
KIAA0240 WILD-TYPE	96	40	47	57

Figure S481. Get High-res Image Gene #95: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0240 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0817 (Fisher's exact test), Q value = 0.21

Table S945. Gene #95: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIAA0240 MUTATED	5	0	3	2	1
KIAA0240 WILD-TYPE	57	59	37	35	58

'KIAA0240 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.39

Table S946. Gene #95: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIAA0240 MUTATED	3	1	7
KIAA0240 WILD-TYPE	103	53	90

'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.37

Table S947. Gene #95: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIAA0240 MUTATED	8	3	1
KIAA0240 WILD-TYPE	115	92	70

'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S948. Gene #95: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIAA0240 MUTATED	8	2	2
KIAA0240 WILD-TYPE	149	61	67

'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.61

Table S949. Gene #95: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIAA0240 MUTATED	1	0	2	4	0	1
KIAA0240 WILD-TYPE	32	19	57	35	16	44

'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.74

Table S950. Gene #95: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIAA0240 MUTATED	2	1	2	0	2	1
KIAA0240 WILD-TYPE	45	38	33	32	21	34

'INPPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00199 (Fisher's exact test), Q value = 0.027

Table S951. Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
INPPL1 MUTATED	0	16	1	3	2
INPPL1 WILD-TYPE	79	110	26	40	10

Figure S482. Get High-res Image Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INPPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00337 (Fisher's exact test), Q value = 0.036

Table S952. Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
INPPL1 MUTATED	0	8	3	1
INPPL1 WILD-TYPE	71	68	31	62

Figure S483. Get High-res Image Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'INPPL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S953. Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
INPPL1 MUTATED	1	10	3	2	4
INPPL1 WILD-TYPE	15	52	48	63	51

'INPPL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00153 (Fisher's exact test), Q value = 0.023

Table S954. Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
INPPL1 MUTATED	5	10	4	1
INPPL1 WILD-TYPE	93	34	46	56

Figure S484. Get High-res Image Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.007

Table S955. Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
INPPL1 MUTATED	13	2	2	4	0
INPPL1 WILD-TYPE	49	57	38	33	59

Figure S485. Get High-res Image Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'INPPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0718 (Fisher's exact test), Q value = 0.19

Table S956. Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
INPPL1 MUTATED	6	2	13
INPPL1 WILD-TYPE	100	52	84

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S957. Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
INPPL1 MUTATED	19	2	1
INPPL1 WILD-TYPE	104	93	70

Figure S486. Get High-res Image Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00112 (Fisher's exact test), Q value = 0.019

Table S958. Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
INPPL1 MUTATED	20	1	1
INPPL1 WILD-TYPE	137	62	68

Figure S487. Get High-res Image Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.27

Table S959. Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
INPPL1 MUTATED	1	1	4	5	0	0
INPPL1 WILD-TYPE	32	18	55	34	16	45

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0739 (Fisher's exact test), Q value = 0.2

Table S960. Gene #96: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
INPPL1 MUTATED	4	0	4	1	2	0
INPPL1 WILD-TYPE	43	39	31	31	21	35

'TFE3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.34

Table S961. Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TFE3 MUTATED	0	7	0	1	0
TFE3 WILD-TYPE	79	119	27	42	12

'TFE3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.081

Table S962. Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TFE3 MUTATED	0	5	2	0
TFE3 WILD-TYPE	71	71	32	63

Figure S488. Get High-res Image Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TFE3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.56

Table S963. Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TFE3 MUTATED	0	1	0	1	3
TFE3 WILD-TYPE	16	61	51	64	52

'TFE3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.14

Table S964. Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TFE3 MUTATED	0	3	1	1
TFE3 WILD-TYPE	98	41	49	56

Figure S489. Get High-res Image Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S965. Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TFE3 MUTATED	4	0	0	2	1
TFE3 WILD-TYPE	58	59	40	35	58

'TFE3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0473 (Fisher's exact test), Q value = 0.15

Table S966. Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TFE3 MUTATED	1	0	6
TFE3 WILD-TYPE	105	54	91

Figure S490. Get High-res Image Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.11

Table S967. Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TFE3 MUTATED	7	0	1
TFE3 WILD-TYPE	116	95	70

Figure S491. Get High-res Image Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.15

Table S968. Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TFE3 MUTATED	8	0	0
TFE3 WILD-TYPE	149	63	69

Figure S492. Get High-res Image Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.64

Table S969. Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TFE3 MUTATED	2	1	2	2	0	0
TFE3 WILD-TYPE	31	18	57	37	16	45

'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.25

Table S970. Gene #97: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TFE3 MUTATED	4	0	2	0	1	0
TFE3 WILD-TYPE	43	39	33	32	22	35

'BTBD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00995 (Fisher's exact test), Q value = 0.066

Table S971. Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BTBD7 MUTATED	0	14	1	2	0
BTBD7 WILD-TYPE	79	112	26	41	12

Figure S493. Get High-res Image Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BTBD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00225 (Fisher's exact test), Q value = 0.03

Table S972. Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BTBD7 MUTATED	1	11	1	1
BTBD7 WILD-TYPE	70	65	33	62

Figure S494. Get High-res Image Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BTBD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.21

Table S973. Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BTBD7 MUTATED	1	4	5	0	4
BTBD7 WILD-TYPE	15	58	46	65	51

'BTBD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00643 (Fisher's exact test), Q value = 0.052

Table S974. Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BTBD7 MUTATED	4	7	3	0
BTBD7 WILD-TYPE	94	37	47	57

Figure S495. Get High-res Image Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.068

Table S975. Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BTBD7 MUTATED	7	1	3	4	0
BTBD7 WILD-TYPE	55	58	37	33	59

Figure S496. Get High-res Image Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BTBD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-04 (Fisher's exact test), Q value = 0.01

Table S976. Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BTBD7 MUTATED	1	1	13
BTBD7 WILD-TYPE	105	53	84

Figure S497. Get High-res Image Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.0079

Table S977. Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BTBD7 MUTATED	15	1	1
BTBD7 WILD-TYPE	108	94	70

Figure S498. Get High-res Image Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00167 (Fisher's exact test), Q value = 0.025

Table S978. Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BTBD7 MUTATED	16	1	0
BTBD7 WILD-TYPE	141	62	69

Figure S499. Get High-res Image Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 0.16

Table S979. Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BTBD7 MUTATED	0	3	3	5	0	1
BTBD7 WILD-TYPE	33	16	56	34	16	44

Figure S500. Get High-res Image Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.48

Table S980. Gene #98: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BTBD7 MUTATED	5	1	2	2	2	0
BTBD7 WILD-TYPE	42	38	33	30	21	35

'PLOD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0985 (Fisher's exact test), Q value = 0.23

Table S981. Gene #99: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLOD3 MUTATED	2	10	0	0	1
PLOD3 WILD-TYPE	77	116	27	43	11

'PLOD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0912 (Fisher's exact test), Q value = 0.22

Table S982. Gene #99: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLOD3 MUTATED	2	8	1	1
PLOD3 WILD-TYPE	69	68	33	62

'PLOD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0867 (Fisher's exact test), Q value = 0.21

Table S983. Gene #99: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PLOD3 MUTATED	0	4	6	1	1
PLOD3 WILD-TYPE	16	58	45	64	54

'PLOD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.56

Table S984. Gene #99: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PLOD3 MUTATED	3	4	3	2
PLOD3 WILD-TYPE	95	40	47	55

'PLOD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0824 (Fisher's exact test), Q value = 0.21

Table S985. Gene #99: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PLOD3 MUTATED	8	1	1	2	2
PLOD3 WILD-TYPE	54	58	39	35	57

'PLOD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.48

Table S986. Gene #99: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PLOD3 MUTATED	4	2	8
PLOD3 WILD-TYPE	102	52	89

'PLOD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.37

Table S987. Gene #99: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PLOD3 MUTATED	9	2	3
PLOD3 WILD-TYPE	114	93	68

'PLOD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.65

Table S988. Gene #99: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PLOD3 MUTATED	10	2	2
PLOD3 WILD-TYPE	147	61	67

'PLOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.69

Table S989. Gene #99: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PLOD3 MUTATED	3	2	3	2	0	1
PLOD3 WILD-TYPE	30	17	56	37	16	44

'PLOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.43

Table S990. Gene #99: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PLOD3 MUTATED	5	1	2	1	2	0
PLOD3 WILD-TYPE	42	38	33	31	21	35

'NOX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.13

Table S991. Gene #100: 'NOX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NOX5 MUTATED	1	10	0	1	2
NOX5 WILD-TYPE	78	116	27	42	10

Figure S501. Get High-res Image Gene #100: 'NOX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NOX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S992. Gene #100: 'NOX5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NOX5 MUTATED	1	7	1	2
NOX5 WILD-TYPE	70	69	33	61

'NOX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 0.8

Table S993. Gene #100: 'NOX5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NOX5 MUTATED	1	5	2	2	3
NOX5 WILD-TYPE	15	57	49	63	52

'NOX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.47

Table S994. Gene #100: 'NOX5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NOX5 MUTATED	4	5	2	2
NOX5 WILD-TYPE	94	39	48	55

'NOX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.46

Table S995. Gene #100: 'NOX5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NOX5 MUTATED	6	2	1	2	1
NOX5 WILD-TYPE	56	57	39	35	58

'NOX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S996. Gene #100: 'NOX5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NOX5 MUTATED	2	2	8
NOX5 WILD-TYPE	104	52	89

'NOX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00457 (Fisher's exact test), Q value = 0.042

Table S997. Gene #100: 'NOX5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NOX5 MUTATED	12	1	1
NOX5 WILD-TYPE	111	94	70

Figure S502. Get High-res Image Gene #100: 'NOX5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 0.2

Table S998. Gene #100: 'NOX5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NOX5 MUTATED	12	1	1
NOX5 WILD-TYPE	145	62	68

'NOX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.44

Table S999. Gene #100: 'NOX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NOX5 MUTATED	2	3	3	1	0	1
NOX5 WILD-TYPE	31	16	56	38	16	44

'NOX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.39

Table S1000. Gene #100: 'NOX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NOX5 MUTATED	5	1	2	2	0	0
NOX5 WILD-TYPE	42	38	33	30	23	35

'SNAPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.33

Table S1001. Gene #101: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SNAPC1 MUTATED	0	4	1	1	1
SNAPC1 WILD-TYPE	79	122	26	42	11

'SNAPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.082

Table S1002. Gene #101: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SNAPC1 MUTATED	0	5	2	0
SNAPC1 WILD-TYPE	71	71	32	63

Figure S503. Get High-res Image Gene #101: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SNAPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S1003. Gene #101: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SNAPC1 MUTATED	1	2	1	0	0
SNAPC1 WILD-TYPE	15	60	50	65	55

'SNAPC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.46

Table S1004. Gene #101: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SNAPC1 MUTATED	1	2	0	1
SNAPC1 WILD-TYPE	97	42	50	56

'SNAPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.27

Table S1005. Gene #101: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SNAPC1 MUTATED	4	1	2	0	0
SNAPC1 WILD-TYPE	58	58	38	37	59

'SNAPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S1006. Gene #101: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SNAPC1 MUTATED	1	1	5
SNAPC1 WILD-TYPE	105	53	92

'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.16

Table S1007. Gene #101: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SNAPC1 MUTATED	6	0	1
SNAPC1 WILD-TYPE	117	95	70

'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.49

Table S1008. Gene #101: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SNAPC1 MUTATED	6	0	1
SNAPC1 WILD-TYPE	151	63	68

'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.4

Table S1009. Gene #101: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SNAPC1 MUTATED	0	1	2	3	0	0
SNAPC1 WILD-TYPE	33	18	57	36	16	45

'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.63

Table S1010. Gene #101: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SNAPC1 MUTATED	2	0	2	1	1	0
SNAPC1 WILD-TYPE	45	39	33	31	22	35

'FGGY MUTATION STATUS' versus 'CN_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.74

Table S1011. Gene #102: 'FGGY MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FGGY MUTATED	3	6	0	0	0
FGGY WILD-TYPE	76	120	27	43	12

'FGGY MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.56

Table S1012. Gene #102: 'FGGY MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FGGY MUTATED	1	3	1	0
FGGY WILD-TYPE	70	73	33	63

'FGGY MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S1013. Gene #102: 'FGGY MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FGGY MUTATED	1	3	3	0	1
FGGY WILD-TYPE	15	59	48	65	54

'FGGY MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.091 (Fisher's exact test), Q value = 0.22

Table S1014. Gene #102: 'FGGY MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FGGY MUTATED	3	4	0	1
FGGY WILD-TYPE	95	40	50	56

'FGGY MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.35

Table S1015. Gene #102: 'FGGY MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FGGY MUTATED	4	0	2	2	1
FGGY WILD-TYPE	58	59	38	35	58

'FGGY MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.29

Table S1016. Gene #102: 'FGGY MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FGGY MUTATED	3	0	6
FGGY WILD-TYPE	103	54	91

'FGGY MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0531 (Fisher's exact test), Q value = 0.16

Table S1017. Gene #102: 'FGGY MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FGGY MUTATED	6	0	3
FGGY WILD-TYPE	117	95	68

'FGGY MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.4

Table S1018. Gene #102: 'FGGY MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FGGY MUTATED	7	0	2
FGGY WILD-TYPE	150	63	67

'FGGY MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.72

Table S1019. Gene #102: 'FGGY MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FGGY MUTATED	1	0	3	2	0	0
FGGY WILD-TYPE	32	19	56	37	16	45

'FGGY MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 0.93

Table S1020. Gene #102: 'FGGY MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FGGY MUTATED	2	0	1	1	1	1
FGGY WILD-TYPE	45	39	34	31	22	34

'ADAM30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.77

Table S1021. Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ADAM30 MUTATED	2	9	1	2	0
ADAM30 WILD-TYPE	77	117	26	41	12

'ADAM30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.7

Table S1022. Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ADAM30 MUTATED	2	4	2	1
ADAM30 WILD-TYPE	69	72	32	62

'ADAM30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S1023. Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ADAM30 MUTATED	0	7	4	2	1
ADAM30 WILD-TYPE	16	55	47	63	54

'ADAM30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.47

Table S1024. Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ADAM30 MUTATED	4	5	3	2
ADAM30 WILD-TYPE	94	39	47	55

'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.7

Table S1025. Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ADAM30 MUTATED	4	2	2	3	1
ADAM30 WILD-TYPE	58	57	38	34	58

'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S1026. Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ADAM30 MUTATED	5	0	7
ADAM30 WILD-TYPE	101	54	90

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.089

Table S1027. Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ADAM30 MUTATED	11	1	2
ADAM30 WILD-TYPE	112	94	69

Figure S504. Get High-res Image Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S1028. Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ADAM30 MUTATED	10	0	4
ADAM30 WILD-TYPE	147	63	65

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.58

Table S1029. Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ADAM30 MUTATED	2	0	2	2	1	0
ADAM30 WILD-TYPE	31	19	57	37	15	45

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.47

Table S1030. Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ADAM30 MUTATED	2	0	1	0	1	3
ADAM30 WILD-TYPE	45	39	34	32	22	32

'EIF5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00537 (Fisher's exact test), Q value = 0.047

Table S1031. Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EIF5B MUTATED	0	15	1	2	0
EIF5B WILD-TYPE	79	111	26	41	12

Figure S505. Get High-res Image Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EIF5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.074

Table S1032. Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EIF5B MUTATED	1	9	3	1
EIF5B WILD-TYPE	70	67	31	62

Figure S506. Get High-res Image Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EIF5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.11

Table S1033. Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EIF5B MUTATED	2	7	3	0	5
EIF5B WILD-TYPE	14	55	48	65	50

Figure S507. Get High-res Image Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EIF5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S1034. Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EIF5B MUTATED	2	11	4	0
EIF5B WILD-TYPE	96	33	46	57

Figure S508. Get High-res Image Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00395 (Fisher's exact test), Q value = 0.039

Table S1035. Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EIF5B MUTATED	9	1	3	2	0
EIF5B WILD-TYPE	53	58	37	35	59

Figure S509. Get High-res Image Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EIF5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00884 (Fisher's exact test), Q value = 0.062

Table S1036. Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EIF5B MUTATED	4	0	11
EIF5B WILD-TYPE	102	54	86

Figure S510. Get High-res Image Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0061

Table S1037. Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EIF5B MUTATED	16	1	1
EIF5B WILD-TYPE	107	94	70

Figure S511. Get High-res Image Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00087 (Fisher's exact test), Q value = 0.017

Table S1038. Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EIF5B MUTATED	17	1	0
EIF5B WILD-TYPE	140	62	69

Figure S512. Get High-res Image Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.35

Table S1039. Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EIF5B MUTATED	3	1	6	3	0	0
EIF5B WILD-TYPE	30	18	53	36	16	45

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0661 (Fisher's exact test), Q value = 0.19

Table S1040. Gene #104: 'EIF5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EIF5B MUTATED	5	0	4	2	2	0
EIF5B WILD-TYPE	42	39	31	30	21	35

'PYGO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.4

Table S1041. Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PYGO2 MUTATED	0	6	0	1	0
PYGO2 WILD-TYPE	79	120	27	42	12

'PYGO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00921 (Fisher's exact test), Q value = 0.063

Table S1042. Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PYGO2 MUTATED	0	6	1	0
PYGO2 WILD-TYPE	71	70	33	63

Figure S513. Get High-res Image Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PYGO2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.63

Table S1043. Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PYGO2 MUTATED	0	2	0	0	1
PYGO2 WILD-TYPE	16	60	51	65	54

'PYGO2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0437 (Fisher's exact test), Q value = 0.15

Table S1044. Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PYGO2 MUTATED	0	2	1	0
PYGO2 WILD-TYPE	98	42	49	57

Figure S514. Get High-res Image Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PYGO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00923 (Fisher's exact test), Q value = 0.064

Table S1045. Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PYGO2 MUTATED	5	0	0	2	0
PYGO2 WILD-TYPE	57	59	40	35	59

Figure S515. Get High-res Image Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PYGO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00157 (Fisher's exact test), Q value = 0.024

Table S1046. Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PYGO2 MUTATED	0	0	7
PYGO2 WILD-TYPE	106	54	90

Figure S516. Get High-res Image Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PYGO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00727 (Fisher's exact test), Q value = 0.056

Table S1047. Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PYGO2 MUTATED	7	0	0
PYGO2 WILD-TYPE	116	95	71

Figure S517. Get High-res Image Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PYGO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.07 (Fisher's exact test), Q value = 0.19

Table S1048. Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PYGO2 MUTATED	7	0	0
PYGO2 WILD-TYPE	150	63	69

'PYGO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.097

Table S1049. Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PYGO2 MUTATED	0	3	1	2	0	0
PYGO2 WILD-TYPE	33	16	58	37	16	45

Figure S518. Get High-res Image Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PYGO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.1

Table S1050. Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PYGO2 MUTATED	5	0	1	0	0	0
PYGO2 WILD-TYPE	42	39	34	32	23	35

Figure S519. Get High-res Image Gene #105: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRPF40B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.13

Table S1051. Gene #106: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRPF40B MUTATED	1	12	1	0	0
PRPF40B WILD-TYPE	78	114	26	43	12

Figure S520. Get High-res Image Gene #106: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRPF40B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.2

Table S1052. Gene #106: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRPF40B MUTATED	1	7	2	1
PRPF40B WILD-TYPE	70	69	32	62

'PRPF40B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.37

Table S1053. Gene #106: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PRPF40B MUTATED	0	6	4	1	2
PRPF40B WILD-TYPE	16	56	47	64	53

'PRPF40B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.083

Table S1054. Gene #106: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PRPF40B MUTATED	2	6	4	1
PRPF40B WILD-TYPE	96	38	46	56

Figure S521. Get High-res Image Gene #106: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PRPF40B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.15

Table S1055. Gene #106: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PRPF40B MUTATED	7	2	1	2	0
PRPF40B WILD-TYPE	55	57	39	35	59

Figure S522. Get High-res Image Gene #106: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PRPF40B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S1056. Gene #106: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PRPF40B MUTATED	2	2	8
PRPF40B WILD-TYPE	104	52	89

'PRPF40B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.075

Table S1057. Gene #106: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PRPF40B MUTATED	11	3	0
PRPF40B WILD-TYPE	112	92	71

Figure S523. Get High-res Image Gene #106: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRPF40B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 0.79

Table S1058. Gene #106: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PRPF40B MUTATED	9	3	2
PRPF40B WILD-TYPE	148	60	67

'PRPF40B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.43

Table S1059. Gene #106: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PRPF40B MUTATED	1	1	6	0	0	2
PRPF40B WILD-TYPE	32	18	53	39	16	43

'PRPF40B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.51

Table S1060. Gene #106: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PRPF40B MUTATED	4	2	3	1	0	0
PRPF40B WILD-TYPE	43	37	32	31	23	35

'C6ORF89 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.58

Table S1061. Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C6ORF89 MUTATED	1	6	1	0	0
C6ORF89 WILD-TYPE	78	120	26	43	12

'C6ORF89 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.093

Table S1062. Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C6ORF89 MUTATED	1	7	1	0
C6ORF89 WILD-TYPE	70	69	33	63

Figure S524. Get High-res Image Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C6ORF89 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.38

Table S1063. Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C6ORF89 MUTATED	1	3	2	0	1
C6ORF89 WILD-TYPE	15	59	49	65	54

'C6ORF89 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0197 (Fisher's exact test), Q value = 0.095

Table S1064. Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C6ORF89 MUTATED	1	4	2	0
C6ORF89 WILD-TYPE	97	40	48	57

Figure S525. Get High-res Image Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C6ORF89 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.11

Table S1065. Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C6ORF89 MUTATED	5	0	0	3	1
C6ORF89 WILD-TYPE	57	59	40	34	58

Figure S526. Get High-res Image Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C6ORF89 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00661 (Fisher's exact test), Q value = 0.053

Table S1066. Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C6ORF89 MUTATED	1	0	8
C6ORF89 WILD-TYPE	105	54	89

Figure S527. Get High-res Image Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.3

Table S1067. Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C6ORF89 MUTATED	7	1	1
C6ORF89 WILD-TYPE	116	94	70

'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.099

Table S1068. Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C6ORF89 MUTATED	9	0	0
C6ORF89 WILD-TYPE	148	63	69

Figure S528. Get High-res Image Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0773 (Fisher's exact test), Q value = 0.2

Table S1069. Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C6ORF89 MUTATED	3	2	1	3	0	0
C6ORF89 WILD-TYPE	30	17	58	36	16	45

'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00089 (Fisher's exact test), Q value = 0.017

Table S1070. Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C6ORF89 MUTATED	6	0	0	0	3	0
C6ORF89 WILD-TYPE	41	39	35	32	20	35

Figure S529. Get High-res Image Gene #107: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ABCC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00956 (Fisher's exact test), Q value = 0.065

Table S1071. Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ABCC4 MUTATED	1	14	1	0	1
ABCC4 WILD-TYPE	78	112	26	43	11

Figure S530. Get High-res Image Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.18

Table S1072. Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ABCC4 MUTATED	0	6	2	4
ABCC4 WILD-TYPE	71	70	32	59

'ABCC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.36

Table S1073. Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ABCC4 MUTATED	2	5	3	1	5
ABCC4 WILD-TYPE	14	57	48	64	50

'ABCC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.38

Table S1074. Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ABCC4 MUTATED	6	5	4	1
ABCC4 WILD-TYPE	92	39	46	56

'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.1

Table S1075. Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ABCC4 MUTATED	9	1	3	2	1
ABCC4 WILD-TYPE	53	58	37	35	58

Figure S531. Get High-res Image Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00334 (Fisher's exact test), Q value = 0.036

Table S1076. Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ABCC4 MUTATED	4	0	12
ABCC4 WILD-TYPE	102	54	85

Figure S532. Get High-res Image Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00368 (Fisher's exact test), Q value = 0.038

Table S1077. Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ABCC4 MUTATED	14	2	1
ABCC4 WILD-TYPE	109	93	70

Figure S533. Get High-res Image Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S1078. Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ABCC4 MUTATED	12	2	3
ABCC4 WILD-TYPE	145	61	66

'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0874 (Fisher's exact test), Q value = 0.22

Table S1079. Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ABCC4 MUTATED	2	0	7	1	1	0
ABCC4 WILD-TYPE	31	19	52	38	15	45

'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0241 (Fisher's exact test), Q value = 0.1

Table S1080. Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ABCC4 MUTATED	2	0	6	2	0	1
ABCC4 WILD-TYPE	45	39	29	30	23	34

Figure S534. Get High-res Image Gene #108: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'USP21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.24

Table S1081. Gene #109: 'USP21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
USP21 MUTATED	1	9	1	0	1
USP21 WILD-TYPE	78	117	26	43	11

'USP21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0768 (Fisher's exact test), Q value = 0.2

Table S1082. Gene #109: 'USP21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
USP21 MUTATED	1	5	2	0
USP21 WILD-TYPE	70	71	32	63

'USP21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S1083. Gene #109: 'USP21 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
USP21 MUTATED	0	6	3	1	1
USP21 WILD-TYPE	16	56	48	64	54

'USP21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0562 (Fisher's exact test), Q value = 0.17

Table S1084. Gene #109: 'USP21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
USP21 MUTATED	2	5	3	1
USP21 WILD-TYPE	96	39	47	56

'USP21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.45

Table S1085. Gene #109: 'USP21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
USP21 MUTATED	6	1	1	1	2
USP21 WILD-TYPE	56	58	39	36	57

'USP21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0664 (Fisher's exact test), Q value = 0.19

Table S1086. Gene #109: 'USP21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
USP21 MUTATED	2	1	8
USP21 WILD-TYPE	104	53	89

'USP21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00931 (Fisher's exact test), Q value = 0.064

Table S1087. Gene #109: 'USP21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
USP21 MUTATED	11	1	1
USP21 WILD-TYPE	112	94	70

Figure S535. Get High-res Image Gene #109: 'USP21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'USP21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.42

Table S1088. Gene #109: 'USP21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
USP21 MUTATED	10	1	2
USP21 WILD-TYPE	147	62	67

'USP21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.56

Table S1089. Gene #109: 'USP21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
USP21 MUTATED	2	0	4	2	0	0
USP21 WILD-TYPE	31	19	55	37	16	45

'USP21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 0.15

Table S1090. Gene #109: 'USP21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
USP21 MUTATED	5	0	2	0	1	0
USP21 WILD-TYPE	42	39	33	32	22	35

Figure S536. Get High-res Image Gene #109: 'USP21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SETDB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.43

Table S1091. Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SETDB2 MUTATED	1	7	0	1	1
SETDB2 WILD-TYPE	78	119	27	42	11

'SETDB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 0.17

Table S1092. Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SETDB2 MUTATED	0	4	1	0
SETDB2 WILD-TYPE	71	72	33	63

'SETDB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 0.14

Table S1093. Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SETDB2 MUTATED	0	6	3	0	1
SETDB2 WILD-TYPE	16	56	48	65	54

Figure S537. Get High-res Image Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SETDB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0319 (Fisher's exact test), Q value = 0.12

Table S1094. Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SETDB2 MUTATED	3	5	2	0
SETDB2 WILD-TYPE	95	39	48	57

Figure S538. Get High-res Image Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SETDB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.01

Table S1095. Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SETDB2 MUTATED	8	0	0	0	1
SETDB2 WILD-TYPE	54	59	40	37	58

Figure S539. Get High-res Image Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SETDB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S1096. Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SETDB2 MUTATED	3	0	6
SETDB2 WILD-TYPE	103	54	91

'SETDB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.068

Table S1097. Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SETDB2 MUTATED	9	1	0
SETDB2 WILD-TYPE	114	94	71

Figure S540. Get High-res Image Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SETDB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.067

Table S1098. Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SETDB2 MUTATED	10	0	0
SETDB2 WILD-TYPE	147	63	69

Figure S541. Get High-res Image Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SETDB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.79

Table S1099. Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SETDB2 MUTATED	1	0	2	2	0	0
SETDB2 WILD-TYPE	32	19	57	37	16	45

'SETDB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.47

Table S1100. Gene #110: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SETDB2 MUTATED	2	0	2	0	1	0
SETDB2 WILD-TYPE	45	39	33	32	22	35

'TTF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.72

Table S1101. Gene #111: 'TTF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TTF1 MUTATED	3	8	0	2	1
TTF1 WILD-TYPE	76	118	27	41	11

'TTF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.13

Table S1102. Gene #111: 'TTF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TTF1 MUTATED	1	6	2	0
TTF1 WILD-TYPE	70	70	32	63

Figure S542. Get High-res Image Gene #111: 'TTF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TTF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.3

Table S1103. Gene #111: 'TTF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TTF1 MUTATED	0	7	2	1	2
TTF1 WILD-TYPE	16	55	49	64	53

'TTF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.091

Table S1104. Gene #111: 'TTF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TTF1 MUTATED	2	6	3	1
TTF1 WILD-TYPE	96	38	47	56

Figure S543. Get High-res Image Gene #111: 'TTF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TTF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00978 (Fisher's exact test), Q value = 0.065

Table S1105. Gene #111: 'TTF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TTF1 MUTATED	8	1	0	0	3
TTF1 WILD-TYPE	54	58	40	37	56

Figure S544. Get High-res Image Gene #111: 'TTF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TTF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S1106. Gene #111: 'TTF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TTF1 MUTATED	5	0	7
TTF1 WILD-TYPE	101	54	90

'TTF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00333 (Fisher's exact test), Q value = 0.036

Table S1107. Gene #111: 'TTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TTF1 MUTATED	11	0	3
TTF1 WILD-TYPE	112	95	68

Figure S545. Get High-res Image Gene #111: 'TTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TTF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0728 (Fisher's exact test), Q value = 0.19

Table S1108. Gene #111: 'TTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TTF1 MUTATED	11	0	3
TTF1 WILD-TYPE	146	63	66

'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.27

Table S1109. Gene #111: 'TTF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TTF1 MUTATED	4	0	2	2	0	0
TTF1 WILD-TYPE	29	19	57	37	16	45

'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.61

Table S1110. Gene #111: 'TTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TTF1 MUTATED	4	0	1	1	1	1
TTF1 WILD-TYPE	43	39	34	31	22	34

'FLNB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.0089

Table S1111. Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FLNB MUTATED	0	20	1	2	1
FLNB WILD-TYPE	79	106	26	41	11

Figure S546. Get High-res Image Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FLNB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S1112. Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FLNB MUTATED	1	16	0	4
FLNB WILD-TYPE	70	60	34	59

Figure S547. Get High-res Image Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FLNB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.58

Table S1113. Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FLNB MUTATED	1	8	3	3	6
FLNB WILD-TYPE	15	54	48	62	49

'FLNB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00523 (Fisher's exact test), Q value = 0.046

Table S1114. Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FLNB MUTATED	4	10	4	3
FLNB WILD-TYPE	94	34	46	54

Figure S548. Get High-res Image Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0084 (Fisher's exact test), Q value = 0.061

Table S1115. Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FLNB MUTATED	11	3	1	4	1
FLNB WILD-TYPE	51	56	39	33	58

Figure S549. Get High-res Image Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FLNB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00718 (Fisher's exact test), Q value = 0.055

Table S1116. Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FLNB MUTATED	3	3	14
FLNB WILD-TYPE	103	51	83

Figure S550. Get High-res Image Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.17

Table S1117. Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FLNB MUTATED	16	5	3
FLNB WILD-TYPE	107	90	68

'FLNB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00211 (Fisher's exact test), Q value = 0.028

Table S1118. Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FLNB MUTATED	21	2	1
FLNB WILD-TYPE	136	61	68

Figure S551. Get High-res Image Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0806 (Fisher's exact test), Q value = 0.21

Table S1119. Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FLNB MUTATED	5	4	2	5	1	2
FLNB WILD-TYPE	28	15	57	34	15	43

'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.087

Table S1120. Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FLNB MUTATED	11	2	2	1	2	1
FLNB WILD-TYPE	36	37	33	31	21	34

Figure S552. Get High-res Image Gene #112: 'FLNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PMEPA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S1121. Gene #113: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PMEPA1 MUTATED	0	7	0	0	0
PMEPA1 WILD-TYPE	79	119	27	43	12

'PMEPA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S1122. Gene #113: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PMEPA1 MUTATED	0	1	2	2
PMEPA1 WILD-TYPE	71	75	32	61

'PMEPA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.17

Table S1123. Gene #113: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PMEPA1 MUTATED	1	4	0	0	2
PMEPA1 WILD-TYPE	15	58	51	65	53

'PMEPA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S1124. Gene #113: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PMEPA1 MUTATED	1	2	3	1
PMEPA1 WILD-TYPE	97	42	47	56

'PMEPA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S1125. Gene #113: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PMEPA1 MUTATED	4	1	0	2	0
PMEPA1 WILD-TYPE	58	58	40	35	59

'PMEPA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.57

Table S1126. Gene #113: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PMEPA1 MUTATED	3	0	4
PMEPA1 WILD-TYPE	103	54	93

'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0073 (Fisher's exact test), Q value = 0.056

Table S1127. Gene #113: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PMEPA1 MUTATED	7	0	0
PMEPA1 WILD-TYPE	116	95	71

Figure S553. Get High-res Image Gene #113: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0688 (Fisher's exact test), Q value = 0.19

Table S1128. Gene #113: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PMEPA1 MUTATED	7	0	0
PMEPA1 WILD-TYPE	150	63	69

'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.4

Table S1129. Gene #113: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PMEPA1 MUTATED	1	0	4	0	0	0
PMEPA1 WILD-TYPE	32	19	55	39	16	45

'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.25

Table S1130. Gene #113: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PMEPA1 MUTATED	1	0	3	0	1	0
PMEPA1 WILD-TYPE	46	39	32	32	22	35

'TNFRSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.14

Table S1131. Gene #114: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TNFRSF9 MUTATED	1	7	0	0	2
TNFRSF9 WILD-TYPE	78	119	27	43	10

Figure S554. Get High-res Image Gene #114: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TNFRSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.44

Table S1132. Gene #114: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TNFRSF9 MUTATED	1	5	0	2
TNFRSF9 WILD-TYPE	70	71	34	61

'TNFRSF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.42

Table S1133. Gene #114: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TNFRSF9 MUTATED	1	4	0	2	1
TNFRSF9 WILD-TYPE	15	58	51	63	54

'TNFRSF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.43

Table S1134. Gene #114: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TNFRSF9 MUTATED	1	2	3	2
TNFRSF9 WILD-TYPE	97	42	47	55

'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.089

Table S1135. Gene #114: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TNFRSF9 MUTATED	6	1	0	2	0
TNFRSF9 WILD-TYPE	56	58	40	35	59

Figure S555. Get High-res Image Gene #114: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0987 (Fisher's exact test), Q value = 0.23

Table S1136. Gene #114: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TNFRSF9 MUTATED	1	2	6
TNFRSF9 WILD-TYPE	105	52	91

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.63

Table S1137. Gene #114: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TNFRSF9 MUTATED	6	3	1
TNFRSF9 WILD-TYPE	117	92	70

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.28

Table S1138. Gene #114: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TNFRSF9 MUTATED	8	2	0
TNFRSF9 WILD-TYPE	149	61	69

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.69

Table S1139. Gene #114: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TNFRSF9 MUTATED	1	1	3	2	0	0
TNFRSF9 WILD-TYPE	32	18	56	37	16	45

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.097

Table S1140. Gene #114: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TNFRSF9 MUTATED	0	0	3	2	2	0
TNFRSF9 WILD-TYPE	47	39	32	30	21	35

Figure S556. Get High-res Image Gene #114: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.008

Table S1141. Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PGM5 MUTATED	0	18	3	1	2
PGM5 WILD-TYPE	79	108	24	42	10

Figure S557. Get High-res Image Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PGM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S1142. Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PGM5 MUTATED	0	16	4	1
PGM5 WILD-TYPE	71	60	30	62

Figure S558. Get High-res Image Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PGM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00866 (Fisher's exact test), Q value = 0.062

Table S1143. Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PGM5 MUTATED	0	6	5	0	8
PGM5 WILD-TYPE	16	56	46	65	47

Figure S559. Get High-res Image Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PGM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.0078

Table S1144. Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PGM5 MUTATED	3	11	3	2
PGM5 WILD-TYPE	95	33	47	55

Figure S560. Get High-res Image Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0025

Table S1145. Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PGM5 MUTATED	15	1	4	3	0
PGM5 WILD-TYPE	47	58	36	34	59

Figure S561. Get High-res Image Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PGM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S1146. Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PGM5 MUTATED	0	2	21
PGM5 WILD-TYPE	106	52	76

Figure S562. Get High-res Image Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00117 (Fisher's exact test), Q value = 0.02

Table S1147. Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PGM5 MUTATED	19	2	4
PGM5 WILD-TYPE	104	93	67

Figure S563. Get High-res Image Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.007

Table S1148. Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PGM5 MUTATED	23	1	1
PGM5 WILD-TYPE	134	62	68

Figure S564. Get High-res Image Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00498 (Fisher's exact test), Q value = 0.045

Table S1149. Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PGM5 MUTATED	5	4	1	7	0	2
PGM5 WILD-TYPE	28	15	58	32	16	43

Figure S565. Get High-res Image Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00259 (Fisher's exact test), Q value = 0.032

Table S1150. Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PGM5 MUTATED	10	1	1	5	2	0
PGM5 WILD-TYPE	37	38	34	27	21	35

Figure S566. Get High-res Image Gene #115: 'PGM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VPS13A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.1

Table S1151. Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
VPS13A MUTATED	4	23	1	3	1
VPS13A WILD-TYPE	75	103	26	40	11

Figure S567. Get High-res Image Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VPS13A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0934 (Fisher's exact test), Q value = 0.22

Table S1152. Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
VPS13A MUTATED	4	13	4	4
VPS13A WILD-TYPE	67	63	30	59

'VPS13A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.38

Table S1153. Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
VPS13A MUTATED	1	12	6	4	7
VPS13A WILD-TYPE	15	50	45	61	48

'VPS13A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0057

Table S1154. Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
VPS13A MUTATED	4	14	7	5
VPS13A WILD-TYPE	94	30	43	52

Figure S568. Get High-res Image Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'VPS13A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.092

Table S1155. Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
VPS13A MUTATED	14	3	4	4	3
VPS13A WILD-TYPE	48	56	36	33	56

Figure S569. Get High-res Image Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'VPS13A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.15

Table S1156. Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
VPS13A MUTATED	10	2	16
VPS13A WILD-TYPE	96	52	81

Figure S570. Get High-res Image Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'VPS13A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00739 (Fisher's exact test), Q value = 0.056

Table S1157. Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
VPS13A MUTATED	22	5	5
VPS13A WILD-TYPE	101	90	66

Figure S571. Get High-res Image Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'VPS13A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.41

Table S1158. Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
VPS13A MUTATED	22	5	5
VPS13A WILD-TYPE	135	58	64

'VPS13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.18

Table S1159. Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
VPS13A MUTATED	3	4	10	2	1	1
VPS13A WILD-TYPE	30	15	49	37	15	44

'VPS13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00638 (Fisher's exact test), Q value = 0.052

Table S1160. Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
VPS13A MUTATED	6	0	9	3	1	2
VPS13A WILD-TYPE	41	39	26	29	22	33

Figure S572. Get High-res Image Gene #116: 'VPS13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM151A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 0.14

Table S1161. Gene #117: 'FAM151A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM151A MUTATED	0	6	2	0	1
FAM151A WILD-TYPE	79	120	25	43	11

Figure S573. Get High-res Image Gene #117: 'FAM151A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM151A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.16

Table S1162. Gene #117: 'FAM151A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM151A MUTATED	0	5	0	1
FAM151A WILD-TYPE	71	71	34	62

'FAM151A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.46

Table S1163. Gene #117: 'FAM151A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FAM151A MUTATED	1	1	1	1	4
FAM151A WILD-TYPE	15	61	50	64	51

'FAM151A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.3

Table S1164. Gene #117: 'FAM151A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FAM151A MUTATED	2	4	1	1
FAM151A WILD-TYPE	96	40	49	56

'FAM151A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.12

Table S1165. Gene #117: 'FAM151A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FAM151A MUTATED	4	0	2	3	0
FAM151A WILD-TYPE	58	59	38	34	59

Figure S574. Get High-res Image Gene #117: 'FAM151A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM151A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00199 (Fisher's exact test), Q value = 0.027

Table S1166. Gene #117: 'FAM151A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FAM151A MUTATED	0	1	8
FAM151A WILD-TYPE	106	53	89

Figure S575. Get High-res Image Gene #117: 'FAM151A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM151A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.072

Table S1167. Gene #117: 'FAM151A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FAM151A MUTATED	8	0	1
FAM151A WILD-TYPE	115	95	70

Figure S576. Get High-res Image Gene #117: 'FAM151A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM151A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S1168. Gene #117: 'FAM151A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FAM151A MUTATED	7	1	1
FAM151A WILD-TYPE	150	62	68

'FAM151A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.59

Table S1169. Gene #117: 'FAM151A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FAM151A MUTATED	0	1	3	1	0	0
FAM151A WILD-TYPE	33	18	56	38	16	45

'FAM151A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.31

Table S1170. Gene #117: 'FAM151A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FAM151A MUTATED	3	0	2	0	0	0
FAM151A WILD-TYPE	44	39	33	32	23	35

'RASA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.47

Table S1171. Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RASA1 MUTATED	5	9	2	0	1
RASA1 WILD-TYPE	74	117	25	43	11

'RASA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0918 (Fisher's exact test), Q value = 0.22

Table S1172. Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RASA1 MUTATED	3	5	3	0
RASA1 WILD-TYPE	68	71	31	63

'RASA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.092

Table S1173. Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RASA1 MUTATED	2	4	3	0	7
RASA1 WILD-TYPE	14	58	48	65	48

Figure S577. Get High-res Image Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RASA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.069

Table S1174. Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RASA1 MUTATED	5	8	2	1
RASA1 WILD-TYPE	93	36	48	56

Figure S578. Get High-res Image Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RASA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0061

Table S1175. Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RASA1 MUTATED	6	0	7	3	0
RASA1 WILD-TYPE	56	59	33	34	59

Figure S579. Get High-res Image Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RASA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0055

Table S1176. Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RASA1 MUTATED	2	0	14
RASA1 WILD-TYPE	104	54	83

Figure S580. Get High-res Image Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RASA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0075

Table S1177. Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RASA1 MUTATED	15	2	0
RASA1 WILD-TYPE	108	93	71

Figure S581. Get High-res Image Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RASA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.28

Table S1178. Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RASA1 MUTATED	13	1	3
RASA1 WILD-TYPE	144	62	66

'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.75

Table S1179. Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RASA1 MUTATED	1	1	5	3	0	1
RASA1 WILD-TYPE	32	18	54	36	16	44

'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.57

Table S1180. Gene #118: 'RASA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RASA1 MUTATED	3	1	3	3	1	0
RASA1 WILD-TYPE	44	38	32	29	22	35

'ZNF48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.38

Table S1181. Gene #119: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF48 MUTATED	1	8	1	0	0
ZNF48 WILD-TYPE	78	118	26	43	12

'ZNF48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.077

Table S1182. Gene #119: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF48 MUTATED	1	3	4	0
ZNF48 WILD-TYPE	70	73	30	63

Figure S582. Get High-res Image Gene #119: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF48 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.33

Table S1183. Gene #119: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZNF48 MUTATED	0	3	4	0	2
ZNF48 WILD-TYPE	16	59	47	65	53

'ZNF48 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.096 (Fisher's exact test), Q value = 0.23

Table S1184. Gene #119: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZNF48 MUTATED	1	4	2	2
ZNF48 WILD-TYPE	97	40	48	55

'ZNF48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.014

Table S1185. Gene #119: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZNF48 MUTATED	7	0	1	0	0
ZNF48 WILD-TYPE	55	59	39	37	59

Figure S583. Get High-res Image Gene #119: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.081

Table S1186. Gene #119: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZNF48 MUTATED	1	0	7
ZNF48 WILD-TYPE	105	54	90

Figure S584. Get High-res Image Gene #119: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.21

Table S1187. Gene #119: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZNF48 MUTATED	8	1	1
ZNF48 WILD-TYPE	115	94	70

'ZNF48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.28

Table S1188. Gene #119: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZNF48 MUTATED	8	2	0
ZNF48 WILD-TYPE	149	61	69

'ZNF48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.78

Table S1189. Gene #119: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZNF48 MUTATED	1	1	3	0	0	1
ZNF48 WILD-TYPE	32	18	56	39	16	44

'ZNF48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.72

Table S1190. Gene #119: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZNF48 MUTATED	2	1	2	0	1	0
ZNF48 WILD-TYPE	45	38	33	32	22	35

'GBP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.19

Table S1191. Gene #120: 'GBP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GBP7 MUTATED	0	8	1	0	0
GBP7 WILD-TYPE	79	118	26	43	12

'GBP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S1192. Gene #120: 'GBP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GBP7 MUTATED	1	4	1	0
GBP7 WILD-TYPE	70	72	33	63

'GBP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.33

Table S1193. Gene #120: 'GBP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GBP7 MUTATED	0	3	4	0	2
GBP7 WILD-TYPE	16	59	47	65	53

'GBP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.31

Table S1194. Gene #120: 'GBP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GBP7 MUTATED	3	3	3	0
GBP7 WILD-TYPE	95	41	47	57

'GBP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.5

Table S1195. Gene #120: 'GBP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GBP7 MUTATED	2	1	2	2	0
GBP7 WILD-TYPE	60	58	38	35	59

'GBP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S1196. Gene #120: 'GBP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GBP7 MUTATED	1	1	5
GBP7 WILD-TYPE	105	53	92

'GBP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.35

Table S1197. Gene #120: 'GBP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GBP7 MUTATED	5	4	0
GBP7 WILD-TYPE	118	91	71

'GBP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 0.65

Table S1198. Gene #120: 'GBP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GBP7 MUTATED	5	3	1
GBP7 WILD-TYPE	152	60	68

'GBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 0.92

Table S1199. Gene #120: 'GBP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GBP7 MUTATED	0	1	2	1	0	2
GBP7 WILD-TYPE	33	18	57	38	16	43

'GBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.64

Table S1200. Gene #120: 'GBP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GBP7 MUTATED	1	2	2	0	1	0
GBP7 WILD-TYPE	46	37	33	32	22	35

'MAP7D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.47

Table S1201. Gene #121: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAP7D1 MUTATED	1	9	1	1	0
MAP7D1 WILD-TYPE	78	117	26	42	12

'MAP7D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.39

Table S1202. Gene #121: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAP7D1 MUTATED	2	5	3	1
MAP7D1 WILD-TYPE	69	71	31	62

'MAP7D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.19

Table S1203. Gene #121: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MAP7D1 MUTATED	2	2	5	1	1
MAP7D1 WILD-TYPE	14	60	46	64	54

'MAP7D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.58

Table S1204. Gene #121: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MAP7D1 MUTATED	4	4	1	2
MAP7D1 WILD-TYPE	94	40	49	55

'MAP7D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.17

Table S1205. Gene #121: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MAP7D1 MUTATED	7	1	0	1	2
MAP7D1 WILD-TYPE	55	58	40	36	57

'MAP7D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 0.61

Table S1206. Gene #121: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MAP7D1 MUTATED	4	1	6
MAP7D1 WILD-TYPE	102	53	91

'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.61

Table S1207. Gene #121: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MAP7D1 MUTATED	7	2	3
MAP7D1 WILD-TYPE	116	93	68

'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 0.85

Table S1208. Gene #121: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MAP7D1 MUTATED	8	2	2
MAP7D1 WILD-TYPE	149	61	67

'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 0.93

Table S1209. Gene #121: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MAP7D1 MUTATED	2	1	4	2	0	1
MAP7D1 WILD-TYPE	31	18	55	37	16	44

'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 0.6

Table S1210. Gene #121: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MAP7D1 MUTATED	4	1	2	0	2	1
MAP7D1 WILD-TYPE	43	38	33	32	21	34

'SERPINI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.37

Table S1211. Gene #122: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SERPINI1 MUTATED	0	6	0	2	0
SERPINI1 WILD-TYPE	79	120	27	41	12

'SERPINI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.18

Table S1212. Gene #122: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SERPINI1 MUTATED	0	4	1	0
SERPINI1 WILD-TYPE	71	72	33	63

'SERPINI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.49

Table S1213. Gene #122: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SERPINI1 MUTATED	0	3	2	0	3
SERPINI1 WILD-TYPE	16	59	49	65	52

'SERPINI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.001 (Fisher's exact test), Q value = 0.018

Table S1214. Gene #122: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SERPINI1 MUTATED	1	6	1	0
SERPINI1 WILD-TYPE	97	38	49	57

Figure S585. Get High-res Image Gene #122: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SERPINI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.076

Table S1215. Gene #122: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SERPINI1 MUTATED	4	0	3	0	0
SERPINI1 WILD-TYPE	58	59	37	37	59

Figure S586. Get High-res Image Gene #122: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SERPINI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.27

Table S1216. Gene #122: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SERPINI1 MUTATED	2	0	5
SERPINI1 WILD-TYPE	104	54	92

'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.1

Table S1217. Gene #122: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SERPINI1 MUTATED	7	0	1
SERPINI1 WILD-TYPE	116	95	70

Figure S587. Get High-res Image Gene #122: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.36

Table S1218. Gene #122: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SERPINI1 MUTATED	7	0	1
SERPINI1 WILD-TYPE	150	63	68

'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.47

Table S1219. Gene #122: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SERPINI1 MUTATED	0	1	1	2	0	0
SERPINI1 WILD-TYPE	33	18	58	37	16	45

'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S1220. Gene #122: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SERPINI1 MUTATED	3	0	0	0	1	0
SERPINI1 WILD-TYPE	44	39	35	32	22	35

'AQP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.11

Table S1221. Gene #123: 'AQP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AQP8 MUTATED	0	9	1	0	1
AQP8 WILD-TYPE	79	117	26	43	11

Figure S588. Get High-res Image Gene #123: 'AQP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AQP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0673 (Fisher's exact test), Q value = 0.19

Table S1222. Gene #123: 'AQP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AQP8 MUTATED	0	6	1	2
AQP8 WILD-TYPE	71	70	33	61

'AQP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.52

Table S1223. Gene #123: 'AQP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
AQP8 MUTATED	0	4	0	2	3
AQP8 WILD-TYPE	16	58	51	63	52

'AQP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.72

Table S1224. Gene #123: 'AQP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
AQP8 MUTATED	2	2	3	2
AQP8 WILD-TYPE	96	42	47	55

'AQP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.23

Table S1225. Gene #123: 'AQP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
AQP8 MUTATED	2	1	3	3	0
AQP8 WILD-TYPE	60	58	37	34	59

'AQP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.07

Table S1226. Gene #123: 'AQP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
AQP8 MUTATED	0	2	7
AQP8 WILD-TYPE	106	52	90

Figure S589. Get High-res Image Gene #123: 'AQP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AQP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0596 (Fisher's exact test), Q value = 0.17

Table S1227. Gene #123: 'AQP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
AQP8 MUTATED	8	3	0
AQP8 WILD-TYPE	115	92	71

'AQP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S1228. Gene #123: 'AQP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
AQP8 MUTATED	9	2	0
AQP8 WILD-TYPE	148	61	69

'AQP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S1229. Gene #123: 'AQP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
AQP8 MUTATED	0	1	1	4	0	2
AQP8 WILD-TYPE	33	18	58	35	16	43

'AQP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0603 (Fisher's exact test), Q value = 0.18

Table S1230. Gene #123: 'AQP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
AQP8 MUTATED	1	0	2	2	3	0
AQP8 WILD-TYPE	46	39	33	30	20	35

'ZCCHC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.084

Table S1231. Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZCCHC6 MUTATED	0	11	0	1	1
ZCCHC6 WILD-TYPE	79	115	27	42	11

Figure S590. Get High-res Image Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S1232. Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZCCHC6 MUTATED	1	6	1	2
ZCCHC6 WILD-TYPE	70	70	33	61

'ZCCHC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.5

Table S1233. Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZCCHC6 MUTATED	1	3	2	1	5
ZCCHC6 WILD-TYPE	15	59	49	64	50

'ZCCHC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0038 (Fisher's exact test), Q value = 0.038

Table S1234. Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZCCHC6 MUTATED	4	7	0	1
ZCCHC6 WILD-TYPE	94	37	50	56

Figure S591. Get High-res Image Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZCCHC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.17

Table S1235. Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZCCHC6 MUTATED	6	1	2	2	0
ZCCHC6 WILD-TYPE	56	58	38	35	59

'ZCCHC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0385 (Fisher's exact test), Q value = 0.14

Table S1236. Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZCCHC6 MUTATED	3	0	8
ZCCHC6 WILD-TYPE	103	54	89

Figure S592. Get High-res Image Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029

Table S1237. Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZCCHC6 MUTATED	13	0	0
ZCCHC6 WILD-TYPE	110	95	71

Figure S593. Get High-res Image Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00176 (Fisher's exact test), Q value = 0.026

Table S1238. Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZCCHC6 MUTATED	13	0	0
ZCCHC6 WILD-TYPE	144	63	69

Figure S594. Get High-res Image Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S1239. Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZCCHC6 MUTATED	1	2	5	1	0	0
ZCCHC6 WILD-TYPE	32	17	54	38	16	45

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0739 (Fisher's exact test), Q value = 0.2

Table S1240. Gene #124: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZCCHC6 MUTATED	3	0	4	2	0	0
ZCCHC6 WILD-TYPE	44	39	31	30	23	35

'ZFHX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00225 (Fisher's exact test), Q value = 0.03

Table S1241. Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZFHX3 MUTATED	3	28	2	4	1
ZFHX3 WILD-TYPE	76	98	25	39	11

Figure S595. Get High-res Image Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZFHX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0046

Table S1242. Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZFHX3 MUTATED	3	21	4	3
ZFHX3 WILD-TYPE	68	55	30	60

Figure S596. Get High-res Image Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFHX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.09

Table S1243. Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZFHX3 MUTATED	1	13	8	2	9
ZFHX3 WILD-TYPE	15	49	43	63	46

Figure S597. Get High-res Image Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZFHX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0025

Table S1244. Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZFHX3 MUTATED	7	15	9	2
ZFHX3 WILD-TYPE	91	29	41	55

Figure S598. Get High-res Image Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0049

Table S1245. Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZFHX3 MUTATED	15	3	4	9	1
ZFHX3 WILD-TYPE	47	56	36	28	58

Figure S599. Get High-res Image Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.013

Table S1246. Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZFHX3 MUTATED	8	2	22
ZFHX3 WILD-TYPE	98	52	75

Figure S600. Get High-res Image Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S1247. Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZFHX3 MUTATED	30	5	3
ZFHX3 WILD-TYPE	93	90	68

Figure S601. Get High-res Image Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00487 (Fisher's exact test), Q value = 0.044

Table S1248. Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZFHX3 MUTATED	30	4	4
ZFHX3 WILD-TYPE	127	59	65

Figure S602. Get High-res Image Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S1249. Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZFHX3 MUTATED	3	4	9	9	3	2
ZFHX3 WILD-TYPE	30	15	50	30	13	43

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.26

Table S1250. Gene #125: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZFHX3 MUTATED	10	2	7	6	3	2
ZFHX3 WILD-TYPE	37	37	28	26	20	33

'C19ORF40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.69

Table S1251. Gene #126: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C19ORF40 MUTATED	1	5	0	0	0
C19ORF40 WILD-TYPE	78	121	27	43	12

'C19ORF40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1252. Gene #126: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C19ORF40 MUTATED	1	1	0	1
C19ORF40 WILD-TYPE	70	75	34	62

'C19ORF40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.082

Table S1253. Gene #126: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C19ORF40 MUTATED	2	3	1	0	0
C19ORF40 WILD-TYPE	14	59	50	65	55

Figure S603. Get High-res Image Gene #126: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C19ORF40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.31

Table S1254. Gene #126: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C19ORF40 MUTATED	2	3	1	0
C19ORF40 WILD-TYPE	96	41	49	57

'C19ORF40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.79

Table S1255. Gene #126: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C19ORF40 MUTATED	2	1	1	1	0
C19ORF40 WILD-TYPE	60	58	39	36	59

'C19ORF40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.65

Table S1256. Gene #126: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C19ORF40 MUTATED	2	0	3
C19ORF40 WILD-TYPE	104	54	94

'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.23

Table S1257. Gene #126: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C19ORF40 MUTATED	5	0	1
C19ORF40 WILD-TYPE	118	95	70

'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S1258. Gene #126: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C19ORF40 MUTATED	6	0	0
C19ORF40 WILD-TYPE	151	63	69

'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.7

Table S1259. Gene #126: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C19ORF40 MUTATED	0	1	1	1	0	0
C19ORF40 WILD-TYPE	33	18	58	38	16	45

'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.71

Table S1260. Gene #126: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C19ORF40 MUTATED	2	0	1	0	0	0
C19ORF40 WILD-TYPE	45	39	34	32	23	35

'SPG20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.069

Table S1261. Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SPG20 MUTATED	2	14	0	2	3
SPG20 WILD-TYPE	77	112	27	41	9

Figure S604. Get High-res Image Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPG20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00518 (Fisher's exact test), Q value = 0.046

Table S1262. Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SPG20 MUTATED	0	9	3	2
SPG20 WILD-TYPE	71	67	31	61

Figure S605. Get High-res Image Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPG20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.26

Table S1263. Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SPG20 MUTATED	1	9	1	3	4
SPG20 WILD-TYPE	15	53	50	62	51

'SPG20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0521 (Fisher's exact test), Q value = 0.16

Table S1264. Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SPG20 MUTATED	4	7	5	2
SPG20 WILD-TYPE	94	37	45	55

'SPG20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00094 (Fisher's exact test), Q value = 0.018

Table S1265. Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SPG20 MUTATED	13	2	1	1	2
SPG20 WILD-TYPE	49	57	39	36	57

Figure S606. Get High-res Image Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SPG20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0748 (Fisher's exact test), Q value = 0.2

Table S1266. Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SPG20 MUTATED	5	2	12
SPG20 WILD-TYPE	101	52	85

'SPG20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00797 (Fisher's exact test), Q value = 0.058

Table S1267. Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SPG20 MUTATED	16	3	2
SPG20 WILD-TYPE	107	92	69

Figure S607. Get High-res Image Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SPG20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.1

Table S1268. Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SPG20 MUTATED	17	3	1
SPG20 WILD-TYPE	140	60	68

Figure S608. Get High-res Image Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SPG20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.47

Table S1269. Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SPG20 MUTATED	2	0	3	5	0	1
SPG20 WILD-TYPE	31	19	56	34	16	44

'SPG20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.079

Table S1270. Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SPG20 MUTATED	5	0	4	0	2	0
SPG20 WILD-TYPE	42	39	31	32	21	35

Figure S609. Get High-res Image Gene #127: 'SPG20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SREBF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 0.84

Table S1271. Gene #128: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SREBF2 MUTATED	2	7	0	1	0
SREBF2 WILD-TYPE	77	119	27	42	12

'SREBF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0761 (Fisher's exact test), Q value = 0.2

Table S1272. Gene #128: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SREBF2 MUTATED	0	5	0	3
SREBF2 WILD-TYPE	71	71	34	60

'SREBF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.46

Table S1273. Gene #128: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SREBF2 MUTATED	1	1	4	1	2
SREBF2 WILD-TYPE	15	61	47	64	53

'SREBF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.32

Table S1274. Gene #128: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SREBF2 MUTATED	5	3	1	0
SREBF2 WILD-TYPE	93	41	49	57

'SREBF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.35

Table S1275. Gene #128: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SREBF2 MUTATED	3	1	0	2	0
SREBF2 WILD-TYPE	59	58	40	35	59

'SREBF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.46

Table S1276. Gene #128: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SREBF2 MUTATED	1	1	4
SREBF2 WILD-TYPE	105	53	93

'SREBF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.069

Table S1277. Gene #128: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SREBF2 MUTATED	9	1	0
SREBF2 WILD-TYPE	114	94	71

Figure S610. Get High-res Image Gene #128: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SREBF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.49

Table S1278. Gene #128: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SREBF2 MUTATED	8	1	1
SREBF2 WILD-TYPE	149	62	68

'SREBF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.5

Table S1279. Gene #128: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SREBF2 MUTATED	1	2	3	0	0	1
SREBF2 WILD-TYPE	32	17	56	39	16	44

'SREBF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S1280. Gene #128: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SREBF2 MUTATED	2	1	2	1	0	1
SREBF2 WILD-TYPE	45	38	33	31	23	34

'GPR161 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.42

Table S1281. Gene #129: 'GPR161 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPR161 MUTATED	2	8	1	0	1
GPR161 WILD-TYPE	77	118	26	43	11

'GPR161 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.75

Table S1282. Gene #129: 'GPR161 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPR161 MUTATED	1	4	1	2
GPR161 WILD-TYPE	70	72	33	61

'GPR161 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.072

Table S1283. Gene #129: 'GPR161 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GPR161 MUTATED	1	6	0	0	2
GPR161 WILD-TYPE	15	56	51	65	53

Figure S611. Get High-res Image Gene #129: 'GPR161 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GPR161 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.31

Table S1284. Gene #129: 'GPR161 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GPR161 MUTATED	3	3	3	0
GPR161 WILD-TYPE	95	41	47	57

'GPR161 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.2

Table S1285. Gene #129: 'GPR161 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GPR161 MUTATED	5	0	3	1	1
GPR161 WILD-TYPE	57	59	37	36	58

'GPR161 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S1286. Gene #129: 'GPR161 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GPR161 MUTATED	4	0	6
GPR161 WILD-TYPE	102	54	91

'GPR161 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0946 (Fisher's exact test), Q value = 0.23

Table S1287. Gene #129: 'GPR161 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GPR161 MUTATED	9	2	1
GPR161 WILD-TYPE	114	93	70

'GPR161 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.25

Table S1288. Gene #129: 'GPR161 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GPR161 MUTATED	9	3	0
GPR161 WILD-TYPE	148	60	69

'GPR161 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S1289. Gene #129: 'GPR161 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GPR161 MUTATED	0	2	3	3	0	0
GPR161 WILD-TYPE	33	17	56	36	16	45

'GPR161 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.41

Table S1290. Gene #129: 'GPR161 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GPR161 MUTATED	2	0	3	2	1	0
GPR161 WILD-TYPE	45	39	32	30	22	35

'CR1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.3

Table S1291. Gene #130: 'CR1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CR1L MUTATED	1	9	0	1	1
CR1L WILD-TYPE	78	117	27	42	11

'CR1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.55

Table S1292. Gene #130: 'CR1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CR1L MUTATED	1	5	2	3
CR1L WILD-TYPE	70	71	32	60

'CR1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.72

Table S1293. Gene #130: 'CR1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CR1L MUTATED	1	3	3	1	2
CR1L WILD-TYPE	15	59	48	64	53

'CR1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 0.75

Table S1294. Gene #130: 'CR1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CR1L MUTATED	4	3	2	1
CR1L WILD-TYPE	94	41	48	56

'CR1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.71

Table S1295. Gene #130: 'CR1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CR1L MUTATED	4	2	3	2	1
CR1L WILD-TYPE	58	57	37	35	58

'CR1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 0.82

Table S1296. Gene #130: 'CR1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CR1L MUTATED	4	2	6
CR1L WILD-TYPE	102	52	91

'CR1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0957 (Fisher's exact test), Q value = 0.23

Table S1297. Gene #130: 'CR1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CR1L MUTATED	9	2	1
CR1L WILD-TYPE	114	93	70

'CR1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S1298. Gene #130: 'CR1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CR1L MUTATED	8	2	2
CR1L WILD-TYPE	149	61	67

'CR1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.35

Table S1299. Gene #130: 'CR1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CR1L MUTATED	1	1	6	0	0	1
CR1L WILD-TYPE	32	18	53	39	16	44

'CR1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.34

Table S1300. Gene #130: 'CR1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CR1L MUTATED	2	2	4	0	1	0
CR1L WILD-TYPE	45	37	31	32	22	35

'RGL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S1301. Gene #131: 'RGL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RGL2 MUTATED	1	8	2	0	1
RGL2 WILD-TYPE	78	118	25	43	11

'RGL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 0.21

Table S1302. Gene #131: 'RGL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RGL2 MUTATED	1	7	1	1
RGL2 WILD-TYPE	70	69	33	62

'RGL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.29

Table S1303. Gene #131: 'RGL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RGL2 MUTATED	1	2	3	0	4
RGL2 WILD-TYPE	15	60	48	65	51

'RGL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00659 (Fisher's exact test), Q value = 0.053

Table S1304. Gene #131: 'RGL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RGL2 MUTATED	3	6	1	0
RGL2 WILD-TYPE	95	38	49	57

Figure S612. Get High-res Image Gene #131: 'RGL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RGL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00605 (Fisher's exact test), Q value = 0.05

Table S1305. Gene #131: 'RGL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RGL2 MUTATED	7	0	0	2	1
RGL2 WILD-TYPE	55	59	40	35	58

Figure S613. Get High-res Image Gene #131: 'RGL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RGL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.1

Table S1306. Gene #131: 'RGL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RGL2 MUTATED	2	0	8
RGL2 WILD-TYPE	104	54	89

Figure S614. Get High-res Image Gene #131: 'RGL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RGL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 0.23

Table S1307. Gene #131: 'RGL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RGL2 MUTATED	9	2	1
RGL2 WILD-TYPE	114	93	70

'RGL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S1308. Gene #131: 'RGL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RGL2 MUTATED	10	1	1
RGL2 WILD-TYPE	147	62	68

'RGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.39

Table S1309. Gene #131: 'RGL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RGL2 MUTATED	2	3	2	1	0	1
RGL2 WILD-TYPE	31	16	57	38	16	44

'RGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 0.89

Table S1310. Gene #131: 'RGL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RGL2 MUTATED	4	1	1	1	1	1
RGL2 WILD-TYPE	43	38	34	31	22	34

'OGDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.36

Table S1311. Gene #132: 'OGDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OGDH MUTATED	1	8	0	0	0
OGDH WILD-TYPE	78	118	27	43	12

'OGDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.42

Table S1312. Gene #132: 'OGDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OGDH MUTATED	0	3	0	1
OGDH WILD-TYPE	71	73	34	62

'OGDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.68

Table S1313. Gene #132: 'OGDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OGDH MUTATED	0	4	2	1	1
OGDH WILD-TYPE	16	58	49	64	54

'OGDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0691 (Fisher's exact test), Q value = 0.19

Table S1314. Gene #132: 'OGDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OGDH MUTATED	1	4	2	1
OGDH WILD-TYPE	97	40	48	56

'OGDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.67

Table S1315. Gene #132: 'OGDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OGDH MUTATED	4	1	1	2	1
OGDH WILD-TYPE	58	58	39	35	58

'OGDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.29

Table S1316. Gene #132: 'OGDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OGDH MUTATED	3	0	6
OGDH WILD-TYPE	103	54	91

'OGDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S1317. Gene #132: 'OGDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OGDH MUTATED	7	1	1
OGDH WILD-TYPE	116	94	70

'OGDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.4

Table S1318. Gene #132: 'OGDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OGDH MUTATED	7	0	2
OGDH WILD-TYPE	150	63	67

'OGDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.43

Table S1319. Gene #132: 'OGDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OGDH MUTATED	1	1	2	0	1	0
OGDH WILD-TYPE	32	18	57	39	15	45

'OGDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S1320. Gene #132: 'OGDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OGDH MUTATED	3	0	0	0	0	2
OGDH WILD-TYPE	44	39	35	32	23	33

'FHOD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.15

Table S1321. Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FHOD3 MUTATED	3	18	1	2	2
FHOD3 WILD-TYPE	76	108	26	41	10

Figure S615. Get High-res Image Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FHOD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0033

Table S1322. Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FHOD3 MUTATED	1	13	3	0
FHOD3 WILD-TYPE	70	63	31	63

Figure S616. Get High-res Image Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FHOD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.57

Table S1323. Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FHOD3 MUTATED	0	6	6	3	6
FHOD3 WILD-TYPE	16	56	45	62	49

'FHOD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0902 (Fisher's exact test), Q value = 0.22

Table S1324. Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FHOD3 MUTATED	5	8	3	5
FHOD3 WILD-TYPE	93	36	47	52

'FHOD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0832 (Fisher's exact test), Q value = 0.21

Table S1325. Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FHOD3 MUTATED	7	3	4	7	2
FHOD3 WILD-TYPE	55	56	36	30	57

'FHOD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.1

Table S1326. Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FHOD3 MUTATED	5	3	15
FHOD3 WILD-TYPE	101	51	82

Figure S617. Get High-res Image Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00134 (Fisher's exact test), Q value = 0.021

Table S1327. Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FHOD3 MUTATED	20	4	2
FHOD3 WILD-TYPE	103	91	69

Figure S618. Get High-res Image Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00381 (Fisher's exact test), Q value = 0.038

Table S1328. Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FHOD3 MUTATED	22	1	3
FHOD3 WILD-TYPE	135	62	66

Figure S619. Get High-res Image Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.099 (Fisher's exact test), Q value = 0.23

Table S1329. Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FHOD3 MUTATED	1	2	6	5	1	0
FHOD3 WILD-TYPE	32	17	53	34	15	45

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0195 (Fisher's exact test), Q value = 0.094

Table S1330. Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FHOD3 MUTATED	5	0	3	1	5	1
FHOD3 WILD-TYPE	42	39	32	31	18	34

Figure S620. Get High-res Image Gene #133: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CABP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.54

Table S1331. Gene #134: 'CABP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CABP5 MUTATED	0	2	1	1	0
CABP5 WILD-TYPE	79	124	26	42	12

'CABP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.098 (Fisher's exact test), Q value = 0.23

Table S1332. Gene #134: 'CABP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CABP5 MUTATED	0	3	1	0
CABP5 WILD-TYPE	71	73	33	63

'CABP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.45

Table S1333. Gene #134: 'CABP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CABP5 MUTATED	0	2	2	0	0
CABP5 WILD-TYPE	16	60	49	65	55

'CABP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00089 (Fisher's exact test), Q value = 0.017

Table S1334. Gene #134: 'CABP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CABP5 MUTATED	0	4	0	0
CABP5 WILD-TYPE	98	40	50	57

Figure S621. Get High-res Image Gene #134: 'CABP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CABP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.1

Table S1335. Gene #134: 'CABP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CABP5 MUTATED	4	0	0	0	0
CABP5 WILD-TYPE	58	59	40	37	59

Figure S622. Get High-res Image Gene #134: 'CABP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CABP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0497 (Fisher's exact test), Q value = 0.16

Table S1336. Gene #134: 'CABP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CABP5 MUTATED	0	0	4
CABP5 WILD-TYPE	106	54	93

Figure S623. Get High-res Image Gene #134: 'CABP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CABP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.46

Table S1337. Gene #134: 'CABP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CABP5 MUTATED	4	1	0
CABP5 WILD-TYPE	119	94	71

'CABP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.63

Table S1338. Gene #134: 'CABP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CABP5 MUTATED	4	1	0
CABP5 WILD-TYPE	153	62	69

'CABP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1339. Gene #134: 'CABP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CABP5 MUTATED	1	0	1	1	0	1
CABP5 WILD-TYPE	32	19	58	38	16	44

'CABP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 0.92

Table S1340. Gene #134: 'CABP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CABP5 MUTATED	2	1	1	0	0	0
CABP5 WILD-TYPE	45	38	34	32	23	35

'TP53BP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.37

Table S1341. Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TP53BP2 MUTATED	1	9	1	1	1
TP53BP2 WILD-TYPE	78	117	26	42	11

'TP53BP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.092

Table S1342. Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TP53BP2 MUTATED	2	6	4	0
TP53BP2 WILD-TYPE	69	70	30	63

Figure S624. Get High-res Image Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53BP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.46

Table S1343. Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TP53BP2 MUTATED	0	3	5	1	3
TP53BP2 WILD-TYPE	16	59	46	64	52

'TP53BP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.15

Table S1344. Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TP53BP2 MUTATED	4	5	3	0
TP53BP2 WILD-TYPE	94	39	47	57

Figure S625. Get High-res Image Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TP53BP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00249 (Fisher's exact test), Q value = 0.031

Table S1345. Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TP53BP2 MUTATED	9	0	1	2	1
TP53BP2 WILD-TYPE	53	59	39	35	58

Figure S626. Get High-res Image Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TP53BP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00873 (Fisher's exact test), Q value = 0.062

Table S1346. Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TP53BP2 MUTATED	3	0	10
TP53BP2 WILD-TYPE	103	54	87

Figure S627. Get High-res Image Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0061

Table S1347. Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TP53BP2 MUTATED	13	0	1
TP53BP2 WILD-TYPE	110	95	70

Figure S628. Get High-res Image Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00069 (Fisher's exact test), Q value = 0.014

Table S1348. Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TP53BP2 MUTATED	14	0	0
TP53BP2 WILD-TYPE	143	63	69

Figure S629. Get High-res Image Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.52

Table S1349. Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TP53BP2 MUTATED	3	1	3	2	1	0
TP53BP2 WILD-TYPE	30	18	56	37	15	45

'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.33

Table S1350. Gene #135: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TP53BP2 MUTATED	3	0	3	2	2	0
TP53BP2 WILD-TYPE	44	39	32	30	21	35

'PHACTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.68

Table S1351. Gene #136: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PHACTR2 MUTATED	2	8	2	1	0
PHACTR2 WILD-TYPE	77	118	25	42	12

'PHACTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0025 (Fisher's exact test), Q value = 0.031

Table S1352. Gene #136: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PHACTR2 MUTATED	1	9	1	0
PHACTR2 WILD-TYPE	70	67	33	63

Figure S630. Get High-res Image Gene #136: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHACTR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.75

Table S1353. Gene #136: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PHACTR2 MUTATED	1	1	2	2	3
PHACTR2 WILD-TYPE	15	61	49	63	52

'PHACTR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.36

Table S1354. Gene #136: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PHACTR2 MUTATED	2	4	1	2
PHACTR2 WILD-TYPE	96	40	49	55

'PHACTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.3

Table S1355. Gene #136: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PHACTR2 MUTATED	7	2	1	1	1
PHACTR2 WILD-TYPE	55	57	39	36	58

'PHACTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 0.11

Table S1356. Gene #136: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PHACTR2 MUTATED	2	1	9
PHACTR2 WILD-TYPE	104	53	88

Figure S631. Get High-res Image Gene #136: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S1357. Gene #136: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PHACTR2 MUTATED	7	3	3
PHACTR2 WILD-TYPE	116	92	68

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 0.74

Table S1358. Gene #136: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PHACTR2 MUTATED	9	2	2
PHACTR2 WILD-TYPE	148	61	67

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.27

Table S1359. Gene #136: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PHACTR2 MUTATED	1	1	0	4	1	2
PHACTR2 WILD-TYPE	32	18	59	35	15	43

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 0.83

Table S1360. Gene #136: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PHACTR2 MUTATED	3	2	0	2	1	1
PHACTR2 WILD-TYPE	44	37	35	30	22	34

'FILIP1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S1361. Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FILIP1L MUTATED	1	12	1	3	0
FILIP1L WILD-TYPE	78	114	26	40	12

'FILIP1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.11

Table S1362. Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FILIP1L MUTATED	3	8	3	0
FILIP1L WILD-TYPE	68	68	31	63

Figure S632. Get High-res Image Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FILIP1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.12

Table S1363. Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FILIP1L MUTATED	0	5	6	0	5
FILIP1L WILD-TYPE	16	57	45	65	50

Figure S633. Get High-res Image Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FILIP1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S1364. Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FILIP1L MUTATED	1	12	2	1
FILIP1L WILD-TYPE	97	32	48	56

Figure S634. Get High-res Image Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FILIP1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00656 (Fisher's exact test), Q value = 0.053

Table S1365. Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FILIP1L MUTATED	9	0	2	1	2
FILIP1L WILD-TYPE	53	59	38	36	57

Figure S635. Get High-res Image Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FILIP1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00407 (Fisher's exact test), Q value = 0.04

Table S1366. Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FILIP1L MUTATED	3	0	11
FILIP1L WILD-TYPE	103	54	86

Figure S636. Get High-res Image Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FILIP1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.1

Table S1367. Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FILIP1L MUTATED	13	2	2
FILIP1L WILD-TYPE	110	93	69

Figure S637. Get High-res Image Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FILIP1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0716 (Fisher's exact test), Q value = 0.19

Table S1368. Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FILIP1L MUTATED	14	1	2
FILIP1L WILD-TYPE	143	62	67

'FILIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.68

Table S1369. Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FILIP1L MUTATED	3	1	5	4	0	1
FILIP1L WILD-TYPE	30	18	54	35	16	44

'FILIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.33

Table S1370. Gene #137: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FILIP1L MUTATED	5	1	1	2	4	1
FILIP1L WILD-TYPE	42	38	34	30	19	34

'STAT5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.47

Table S1371. Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STAT5B MUTATED	1	9	1	1	0
STAT5B WILD-TYPE	78	117	26	42	12

'STAT5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S1372. Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
STAT5B MUTATED	1	6	2	1
STAT5B WILD-TYPE	70	70	32	62

'STAT5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.15

Table S1373. Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
STAT5B MUTATED	1	6	1	0	2
STAT5B WILD-TYPE	15	56	50	65	53

Figure S638. Get High-res Image Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'STAT5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00247 (Fisher's exact test), Q value = 0.031

Table S1374. Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
STAT5B MUTATED	1	5	4	0
STAT5B WILD-TYPE	97	39	46	57

Figure S639. Get High-res Image Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STAT5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00905 (Fisher's exact test), Q value = 0.063

Table S1375. Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
STAT5B MUTATED	6	0	1	2	0
STAT5B WILD-TYPE	56	59	39	35	59

Figure S640. Get High-res Image Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STAT5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00758 (Fisher's exact test), Q value = 0.057

Table S1376. Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
STAT5B MUTATED	1	0	8
STAT5B WILD-TYPE	105	54	89

Figure S641. Get High-res Image Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'STAT5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.14

Table S1377. Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
STAT5B MUTATED	9	3	0
STAT5B WILD-TYPE	114	92	71

Figure S642. Get High-res Image Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'STAT5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.52

Table S1378. Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
STAT5B MUTATED	9	2	1
STAT5B WILD-TYPE	148	61	68

'STAT5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 0.83

Table S1379. Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
STAT5B MUTATED	1	1	5	2	0	1
STAT5B WILD-TYPE	32	18	54	37	16	44

'STAT5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.3

Table S1380. Gene #138: 'STAT5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
STAT5B MUTATED	4	1	4	1	0	0
STAT5B WILD-TYPE	43	38	31	31	23	35

'FASTKD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.24

Table S1381. Gene #139: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FASTKD1 MUTATED	0	7	1	2	1
FASTKD1 WILD-TYPE	79	119	26	41	11

'FASTKD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.41

Table S1382. Gene #139: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FASTKD1 MUTATED	2	6	2	1
FASTKD1 WILD-TYPE	69	70	32	62

'FASTKD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 0.13

Table S1383. Gene #139: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FASTKD1 MUTATED	2	4	4	0	1
FASTKD1 WILD-TYPE	14	58	47	65	54

Figure S643. Get High-res Image Gene #139: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FASTKD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.53

Table S1384. Gene #139: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FASTKD1 MUTATED	4	4	2	1
FASTKD1 WILD-TYPE	94	40	48	56

'FASTKD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.26

Table S1385. Gene #139: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FASTKD1 MUTATED	5	1	2	1	0
FASTKD1 WILD-TYPE	57	58	38	36	59

'FASTKD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.42

Table S1386. Gene #139: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FASTKD1 MUTATED	2	1	6
FASTKD1 WILD-TYPE	104	53	91

'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.1

Table S1387. Gene #139: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FASTKD1 MUTATED	8	0	3
FASTKD1 WILD-TYPE	115	95	68

Figure S644. Get High-res Image Gene #139: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S1388. Gene #139: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FASTKD1 MUTATED	9	0	2
FASTKD1 WILD-TYPE	148	63	67

'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S1389. Gene #139: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FASTKD1 MUTATED	3	2	2	1	0	0
FASTKD1 WILD-TYPE	30	17	57	38	16	45

'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.52

Table S1390. Gene #139: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FASTKD1 MUTATED	4	0	2	1	0	1
FASTKD1 WILD-TYPE	43	39	33	31	23	34

'ATP6V1C2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.17

Table S1391. Gene #140: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ATP6V1C2 MUTATED	0	9	1	1	1
ATP6V1C2 WILD-TYPE	79	117	26	42	11

'ATP6V1C2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.12

Table S1392. Gene #140: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ATP6V1C2 MUTATED	0	7	2	2
ATP6V1C2 WILD-TYPE	71	69	32	61

Figure S645. Get High-res Image Gene #140: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP6V1C2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.29

Table S1393. Gene #140: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ATP6V1C2 MUTATED	1	2	4	0	2
ATP6V1C2 WILD-TYPE	15	60	47	65	53

'ATP6V1C2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S1394. Gene #140: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ATP6V1C2 MUTATED	2	4	2	1
ATP6V1C2 WILD-TYPE	96	40	48	56

'ATP6V1C2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.075

Table S1395. Gene #140: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ATP6V1C2 MUTATED	6	0	2	2	0
ATP6V1C2 WILD-TYPE	56	59	38	35	59

Figure S646. Get High-res Image Gene #140: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATP6V1C2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.55

Table S1396. Gene #140: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ATP6V1C2 MUTATED	3	1	6
ATP6V1C2 WILD-TYPE	103	53	91

'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00233 (Fisher's exact test), Q value = 0.03

Table S1397. Gene #140: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ATP6V1C2 MUTATED	11	1	0
ATP6V1C2 WILD-TYPE	112	94	71

Figure S647. Get High-res Image Gene #140: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0597 (Fisher's exact test), Q value = 0.17

Table S1398. Gene #140: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ATP6V1C2 MUTATED	10	2	0
ATP6V1C2 WILD-TYPE	147	61	69

'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0921 (Fisher's exact test), Q value = 0.22

Table S1399. Gene #140: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ATP6V1C2 MUTATED	0	3	5	1	0	1
ATP6V1C2 WILD-TYPE	33	16	54	38	16	44

'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.74

Table S1400. Gene #140: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ATP6V1C2 MUTATED	3	2	3	1	1	0
ATP6V1C2 WILD-TYPE	44	37	32	31	22	35

'ZFC3H1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.36

Table S1401. Gene #141: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZFC3H1 MUTATED	1	10	1	2	1
ZFC3H1 WILD-TYPE	78	116	26	41	11

'ZFC3H1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S1402. Gene #141: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZFC3H1 MUTATED	1	7	1	2
ZFC3H1 WILD-TYPE	70	69	33	61

'ZFC3H1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.52

Table S1403. Gene #141: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZFC3H1 MUTATED	1	1	2	4	5
ZFC3H1 WILD-TYPE	15	61	49	61	50

'ZFC3H1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.1

Table S1404. Gene #141: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZFC3H1 MUTATED	4	6	0	3
ZFC3H1 WILD-TYPE	94	38	50	54

Figure S648. Get High-res Image Gene #141: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZFC3H1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.33

Table S1405. Gene #141: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZFC3H1 MUTATED	7	1	2	3	2
ZFC3H1 WILD-TYPE	55	58	38	34	57

'ZFC3H1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.37

Table S1406. Gene #141: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZFC3H1 MUTATED	4	2	9
ZFC3H1 WILD-TYPE	102	52	88

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 0.19

Table S1407. Gene #141: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZFC3H1 MUTATED	11	2	2
ZFC3H1 WILD-TYPE	112	93	69

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.3

Table S1408. Gene #141: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZFC3H1 MUTATED	12	1	2
ZFC3H1 WILD-TYPE	145	62	67

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.082

Table S1409. Gene #141: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZFC3H1 MUTATED	1	3	2	2	3	0
ZFC3H1 WILD-TYPE	32	16	57	37	13	45

Figure S649. Get High-res Image Gene #141: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.49

Table S1410. Gene #141: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZFC3H1 MUTATED	5	0	2	2	1	1
ZFC3H1 WILD-TYPE	42	39	33	30	22	34

'GCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.1

Table S1411. Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GCC2 MUTATED	0	7	0	1	2
GCC2 WILD-TYPE	79	119	27	42	10

Figure S650. Get High-res Image Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.15

Table S1412. Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GCC2 MUTATED	0	2	3	1
GCC2 WILD-TYPE	71	74	31	62

Figure S651. Get High-res Image Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.071

Table S1413. Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GCC2 MUTATED	1	6	0	0	3
GCC2 WILD-TYPE	15	56	51	65	52

Figure S652. Get High-res Image Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.083

Table S1414. Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GCC2 MUTATED	2	5	3	0
GCC2 WILD-TYPE	96	39	47	57

Figure S653. Get High-res Image Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S1415. Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GCC2 MUTATED	9	0	0	1	0
GCC2 WILD-TYPE	53	59	40	36	59

Figure S654. Get High-res Image Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.32

Table S1416. Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GCC2 MUTATED	4	0	6
GCC2 WILD-TYPE	102	54	91

'GCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00736 (Fisher's exact test), Q value = 0.056

Table S1417. Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GCC2 MUTATED	9	0	1
GCC2 WILD-TYPE	114	95	70

Figure S655. Get High-res Image Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.068

Table S1418. Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GCC2 MUTATED	10	0	0
GCC2 WILD-TYPE	147	63	69

Figure S656. Get High-res Image Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 0.91

Table S1419. Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GCC2 MUTATED	1	0	2	1	0	0
GCC2 WILD-TYPE	32	19	57	38	16	45

'GCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S1420. Gene #142: 'GCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GCC2 MUTATED	0	0	2	1	1	0
GCC2 WILD-TYPE	47	39	33	31	22	35

'STAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.1

Table S1421. Gene #143: 'STAT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STAT2 MUTATED	0	5	2	1	2
STAT2 WILD-TYPE	79	121	25	42	10

Figure S657. Get High-res Image Gene #143: 'STAT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'STAT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0922 (Fisher's exact test), Q value = 0.22

Table S1422. Gene #143: 'STAT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
STAT2 MUTATED	0	5	1	1
STAT2 WILD-TYPE	71	71	33	62

'STAT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.29

Table S1423. Gene #143: 'STAT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
STAT2 MUTATED	1	4	1	0	3
STAT2 WILD-TYPE	15	58	50	65	52

'STAT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.085

Table S1424. Gene #143: 'STAT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
STAT2 MUTATED	2	5	2	0
STAT2 WILD-TYPE	96	39	48	57

Figure S658. Get High-res Image Gene #143: 'STAT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.1

Table S1425. Gene #143: 'STAT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
STAT2 MUTATED	5	0	1	2	0
STAT2 WILD-TYPE	57	59	39	35	59

Figure S659. Get High-res Image Gene #143: 'STAT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.089 (Fisher's exact test), Q value = 0.22

Table S1426. Gene #143: 'STAT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
STAT2 MUTATED	1	1	6
STAT2 WILD-TYPE	105	53	91

'STAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 0.15

Table S1427. Gene #143: 'STAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
STAT2 MUTATED	8	2	0
STAT2 WILD-TYPE	115	93	71

Figure S660. Get High-res Image Gene #143: 'STAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'STAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0569 (Fisher's exact test), Q value = 0.17

Table S1428. Gene #143: 'STAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
STAT2 MUTATED	9	1	0
STAT2 WILD-TYPE	148	62	69

'STAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.6

Table S1429. Gene #143: 'STAT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
STAT2 MUTATED	1	2	1	1	0	1
STAT2 WILD-TYPE	32	17	58	38	16	44

'STAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 0.96

Table S1430. Gene #143: 'STAT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
STAT2 MUTATED	2	1	1	1	1	0
STAT2 WILD-TYPE	45	38	34	31	22	35

'UBQLN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S1431. Gene #144: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
UBQLN2 MUTATED	0	4	0	0	1
UBQLN2 WILD-TYPE	79	122	27	43	11

'UBQLN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.62

Table S1432. Gene #144: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
UBQLN2 MUTATED	0	2	0	2
UBQLN2 WILD-TYPE	71	74	34	61

'UBQLN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.4

Table S1433. Gene #144: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
UBQLN2 MUTATED	0	3	0	0	1
UBQLN2 WILD-TYPE	16	59	51	65	54

'UBQLN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 0.13

Table S1434. Gene #144: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
UBQLN2 MUTATED	0	2	2	0
UBQLN2 WILD-TYPE	98	42	48	57

Figure S661. Get High-res Image Gene #144: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UBQLN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S1435. Gene #144: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
UBQLN2 MUTATED	3	0	1	1	0
UBQLN2 WILD-TYPE	59	59	39	36	59

'UBQLN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.38

Table S1436. Gene #144: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
UBQLN2 MUTATED	1	0	4
UBQLN2 WILD-TYPE	105	54	93

'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S1437. Gene #144: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
UBQLN2 MUTATED	4	0	1
UBQLN2 WILD-TYPE	119	95	70

'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.63

Table S1438. Gene #144: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
UBQLN2 MUTATED	4	1	0
UBQLN2 WILD-TYPE	153	62	69

'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 0.84

Table S1439. Gene #144: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
UBQLN2 MUTATED	0	0	2	1	0	0
UBQLN2 WILD-TYPE	33	19	57	38	16	45

'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.51

Table S1440. Gene #144: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
UBQLN2 MUTATED	1	0	2	0	0	0
UBQLN2 WILD-TYPE	46	39	33	32	23	35

'INF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.3

Table S1441. Gene #145: 'INF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
INF2 MUTATED	1	8	1	0	1
INF2 WILD-TYPE	78	118	26	43	11

'INF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.32

Table S1442. Gene #145: 'INF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
INF2 MUTATED	1	6	1	1
INF2 WILD-TYPE	70	70	33	62

'INF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.27

Table S1443. Gene #145: 'INF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
INF2 MUTATED	1	3	1	0	4
INF2 WILD-TYPE	15	59	50	65	51

'INF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.72

Table S1444. Gene #145: 'INF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
INF2 MUTATED	3	3	2	1
INF2 WILD-TYPE	95	41	48	56

'INF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0596 (Fisher's exact test), Q value = 0.17

Table S1445. Gene #145: 'INF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
INF2 MUTATED	6	0	2	2	1
INF2 WILD-TYPE	56	59	38	35	58

'INF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.039 (Fisher's exact test), Q value = 0.14

Table S1446. Gene #145: 'INF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
INF2 MUTATED	3	0	8
INF2 WILD-TYPE	103	54	89

Figure S662. Get High-res Image Gene #145: 'INF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'INF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.26

Table S1447. Gene #145: 'INF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
INF2 MUTATED	8	1	2
INF2 WILD-TYPE	115	94	69

'INF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.43

Table S1448. Gene #145: 'INF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
INF2 MUTATED	9	1	1
INF2 WILD-TYPE	148	62	68

'INF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.69

Table S1449. Gene #145: 'INF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
INF2 MUTATED	0	1	3	3	0	1
INF2 WILD-TYPE	33	18	56	36	16	44

'INF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.52

Table S1450. Gene #145: 'INF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
INF2 MUTATED	3	0	3	1	0	1
INF2 WILD-TYPE	44	39	32	31	23	34

'ZKSCAN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.12

Table S1451. Gene #146: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZKSCAN5 MUTATED	0	8	0	0	1
ZKSCAN5 WILD-TYPE	79	118	27	43	11

Figure S663. Get High-res Image Gene #146: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.68

Table S1452. Gene #146: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZKSCAN5 MUTATED	1	3	2	2
ZKSCAN5 WILD-TYPE	70	73	32	61

'ZKSCAN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 0.16

Table S1453. Gene #146: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZKSCAN5 MUTATED	1	4	2	0	0
ZKSCAN5 WILD-TYPE	15	58	49	65	55

Figure S664. Get High-res Image Gene #146: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.36

Table S1454. Gene #146: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZKSCAN5 MUTATED	3	3	1	0
ZKSCAN5 WILD-TYPE	95	41	49	57

'ZKSCAN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.11

Table S1455. Gene #146: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZKSCAN5 MUTATED	5	0	2	2	0
ZKSCAN5 WILD-TYPE	57	59	38	35	59

Figure S665. Get High-res Image Gene #146: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.67

Table S1456. Gene #146: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZKSCAN5 MUTATED	3	1	5
ZKSCAN5 WILD-TYPE	103	53	92

'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 0.2

Table S1457. Gene #146: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZKSCAN5 MUTATED	7	2	0
ZKSCAN5 WILD-TYPE	116	93	71

'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.28

Table S1458. Gene #146: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZKSCAN5 MUTATED	8	0	1
ZKSCAN5 WILD-TYPE	149	63	68

'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S1459. Gene #146: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZKSCAN5 MUTATED	0	2	3	3	0	0
ZKSCAN5 WILD-TYPE	33	17	56	36	16	45

'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.34

Table S1460. Gene #146: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZKSCAN5 MUTATED	2	0	3	0	2	1
ZKSCAN5 WILD-TYPE	45	39	32	32	21	34

'PAMR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0531 (Fisher's exact test), Q value = 0.16

Table S1461. Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PAMR1 MUTATED	1	13	2	1	0
PAMR1 WILD-TYPE	78	113	25	42	12

'PAMR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.074

Table S1462. Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PAMR1 MUTATED	0	7	2	1
PAMR1 WILD-TYPE	71	69	32	62

Figure S666. Get High-res Image Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAMR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.081

Table S1463. Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PAMR1 MUTATED	2	5	7	0	3
PAMR1 WILD-TYPE	14	57	44	65	52

Figure S667. Get High-res Image Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PAMR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0114 (Fisher's exact test), Q value = 0.071

Table S1464. Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PAMR1 MUTATED	7	7	3	0
PAMR1 WILD-TYPE	91	37	47	57

Figure S668. Get High-res Image Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PAMR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S1465. Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PAMR1 MUTATED	7	2	3	4	1
PAMR1 WILD-TYPE	55	57	37	33	58

'PAMR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S1466. Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PAMR1 MUTATED	6	1	10
PAMR1 WILD-TYPE	100	53	87

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00378 (Fisher's exact test), Q value = 0.038

Table S1467. Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PAMR1 MUTATED	14	2	1
PAMR1 WILD-TYPE	109	93	70

Figure S669. Get High-res Image Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.083

Table S1468. Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PAMR1 MUTATED	15	1	1
PAMR1 WILD-TYPE	142	62	68

Figure S670. Get High-res Image Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.77

Table S1469. Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PAMR1 MUTATED	1	0	5	2	0	1
PAMR1 WILD-TYPE	32	19	54	37	16	44

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.29

Table S1470. Gene #147: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PAMR1 MUTATED	3	1	4	0	1	0
PAMR1 WILD-TYPE	44	38	31	32	22	35

'EPHX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0562 (Fisher's exact test), Q value = 0.17

Table S1471. Gene #148: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EPHX1 MUTATED	0	7	1	0	1
EPHX1 WILD-TYPE	79	119	26	43	11

'EPHX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0519 (Fisher's exact test), Q value = 0.16

Table S1472. Gene #148: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EPHX1 MUTATED	0	5	0	1
EPHX1 WILD-TYPE	71	71	34	62

'EPHX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S1473. Gene #148: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EPHX1 MUTATED	0	5	2	0	1
EPHX1 WILD-TYPE	16	57	49	65	54

'EPHX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0553 (Fisher's exact test), Q value = 0.17

Table S1474. Gene #148: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EPHX1 MUTATED	2	4	2	0
EPHX1 WILD-TYPE	96	40	48	57

'EPHX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00935 (Fisher's exact test), Q value = 0.064

Table S1475. Gene #148: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EPHX1 MUTATED	4	0	0	3	0
EPHX1 WILD-TYPE	58	59	40	34	59

Figure S671. Get High-res Image Gene #148: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPHX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 0.15

Table S1476. Gene #148: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EPHX1 MUTATED	1	0	6
EPHX1 WILD-TYPE	105	54	91

Figure S672. Get High-res Image Gene #148: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00111 (Fisher's exact test), Q value = 0.019

Table S1477. Gene #148: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EPHX1 MUTATED	9	0	0
EPHX1 WILD-TYPE	114	95	71

Figure S673. Get High-res Image Gene #148: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.26

Table S1478. Gene #148: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EPHX1 MUTATED	8	1	0
EPHX1 WILD-TYPE	149	62	69

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0484 (Fisher's exact test), Q value = 0.15

Table S1479. Gene #148: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EPHX1 MUTATED	0	2	4	0	0	0
EPHX1 WILD-TYPE	33	17	55	39	16	45

Figure S674. Get High-res Image Gene #148: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0733 (Fisher's exact test), Q value = 0.19

Table S1480. Gene #148: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EPHX1 MUTATED	4	0	2	0	0	0
EPHX1 WILD-TYPE	43	39	33	32	23	35

'ARID1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00144 (Fisher's exact test), Q value = 0.022

Table S1481. Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARID1B MUTATED	1	21	1	2	1
ARID1B WILD-TYPE	78	105	26	41	11

Figure S675. Get High-res Image Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00886 (Fisher's exact test), Q value = 0.062

Table S1482. Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARID1B MUTATED	1	11	3	2
ARID1B WILD-TYPE	70	65	31	61

Figure S676. Get High-res Image Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S1483. Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ARID1B MUTATED	1	10	7	2	5
ARID1B WILD-TYPE	15	52	44	63	50

'ARID1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 0.1

Table S1484. Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ARID1B MUTATED	7	9	7	2
ARID1B WILD-TYPE	91	35	43	55

Figure S677. Get High-res Image Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARID1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00231 (Fisher's exact test), Q value = 0.03

Table S1485. Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ARID1B MUTATED	14	4	3	2	1
ARID1B WILD-TYPE	48	55	37	35	58

Figure S678. Get High-res Image Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARID1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S1486. Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ARID1B MUTATED	9	2	13
ARID1B WILD-TYPE	97	52	84

'ARID1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.072

Table S1487. Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ARID1B MUTATED	19	5	3
ARID1B WILD-TYPE	104	90	68

Figure S679. Get High-res Image Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARID1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00206 (Fisher's exact test), Q value = 0.028

Table S1488. Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ARID1B MUTATED	23	3	1
ARID1B WILD-TYPE	134	60	68

Figure S680. Get High-res Image Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARID1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S1489. Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ARID1B MUTATED	2	2	6	4	0	0
ARID1B WILD-TYPE	31	17	53	35	16	45

'ARID1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.079

Table S1490. Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ARID1B MUTATED	6	0	5	1	2	0
ARID1B WILD-TYPE	41	39	30	31	21	35

Figure S681. Get High-res Image Gene #149: 'ARID1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ALDH3A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S1491. Gene #150: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ALDH3A1 MUTATED	0	7	1	1	1
ALDH3A1 WILD-TYPE	79	119	26	42	11

'ALDH3A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 0.16

Table S1492. Gene #150: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ALDH3A1 MUTATED	0	5	0	1
ALDH3A1 WILD-TYPE	71	71	34	62

'ALDH3A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 0.16

Table S1493. Gene #150: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ALDH3A1 MUTATED	0	6	1	0	3
ALDH3A1 WILD-TYPE	16	56	50	65	52

Figure S682. Get High-res Image Gene #150: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0222 (Fisher's exact test), Q value = 0.1

Table S1494. Gene #150: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ALDH3A1 MUTATED	2	4	4	0
ALDH3A1 WILD-TYPE	96	40	46	57

Figure S683. Get High-res Image Gene #150: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ALDH3A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 0.19

Table S1495. Gene #150: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ALDH3A1 MUTATED	5	1	1	3	0
ALDH3A1 WILD-TYPE	57	58	39	34	59

'ALDH3A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.29

Table S1496. Gene #150: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ALDH3A1 MUTATED	2	1	7
ALDH3A1 WILD-TYPE	104	53	90

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.067

Table S1497. Gene #150: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ALDH3A1 MUTATED	9	1	0
ALDH3A1 WILD-TYPE	114	94	71

Figure S684. Get High-res Image Gene #150: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.49

Table S1498. Gene #150: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ALDH3A1 MUTATED	8	1	1
ALDH3A1 WILD-TYPE	149	62	68

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0622 (Fisher's exact test), Q value = 0.18

Table S1499. Gene #150: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ALDH3A1 MUTATED	0	2	1	3	0	0
ALDH3A1 WILD-TYPE	33	17	58	36	16	45

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S1500. Gene #150: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ALDH3A1 MUTATED	3	0	1	0	2	0
ALDH3A1 WILD-TYPE	44	39	34	32	21	35

'FERMT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.4

Table S1501. Gene #151: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FERMT2 MUTATED	0	6	0	1	0
FERMT2 WILD-TYPE	79	120	27	42	12

'FERMT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.077

Table S1502. Gene #151: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FERMT2 MUTATED	0	5	0	0
FERMT2 WILD-TYPE	71	71	34	63

Figure S685. Get High-res Image Gene #151: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FERMT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.2

Table S1503. Gene #151: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FERMT2 MUTATED	0	2	0	0	4
FERMT2 WILD-TYPE	16	60	51	65	51

'FERMT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.0096

Table S1504. Gene #151: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FERMT2 MUTATED	0	5	1	0
FERMT2 WILD-TYPE	98	39	49	57

Figure S686. Get High-res Image Gene #151: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FERMT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.18

Table S1505. Gene #151: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FERMT2 MUTATED	4	0	1	1	0
FERMT2 WILD-TYPE	58	59	39	36	59

'FERMT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S1506. Gene #151: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FERMT2 MUTATED	1	0	5
FERMT2 WILD-TYPE	105	54	92

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.52

Table S1507. Gene #151: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FERMT2 MUTATED	5	1	1
FERMT2 WILD-TYPE	118	94	70

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0713 (Fisher's exact test), Q value = 0.19

Table S1508. Gene #151: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FERMT2 MUTATED	7	0	0
FERMT2 WILD-TYPE	150	63	69

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.1

Table S1509. Gene #151: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FERMT2 MUTATED	1	0	0	4	0	0
FERMT2 WILD-TYPE	32	19	59	35	16	45

Figure S687. Get High-res Image Gene #151: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0369 (Fisher's exact test), Q value = 0.13

Table S1510. Gene #151: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FERMT2 MUTATED	4	0	0	0	1	0
FERMT2 WILD-TYPE	43	39	35	32	22	35

Figure S688. Get High-res Image Gene #151: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C13ORF33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.33

Table S1511. Gene #152: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C13ORF33 MUTATED	0	4	1	1	1
C13ORF33 WILD-TYPE	79	122	26	42	11

'C13ORF33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.081

Table S1512. Gene #152: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C13ORF33 MUTATED	0	5	2	0
C13ORF33 WILD-TYPE	71	71	32	63

Figure S689. Get High-res Image Gene #152: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C13ORF33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.57

Table S1513. Gene #152: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C13ORF33 MUTATED	0	3	1	0	2
C13ORF33 WILD-TYPE	16	59	50	65	53

'C13ORF33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0715 (Fisher's exact test), Q value = 0.19

Table S1514. Gene #152: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C13ORF33 MUTATED	1	3	2	0
C13ORF33 WILD-TYPE	97	41	48	57

'C13ORF33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.15

Table S1515. Gene #152: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C13ORF33 MUTATED	4	0	1	0	0
C13ORF33 WILD-TYPE	58	59	39	37	59

Figure S690. Get High-res Image Gene #152: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C13ORF33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.081

Table S1516. Gene #152: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C13ORF33 MUTATED	0	0	5
C13ORF33 WILD-TYPE	106	54	92

Figure S691. Get High-res Image Gene #152: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 0.86

Table S1517. Gene #152: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C13ORF33 MUTATED	4	2	1
C13ORF33 WILD-TYPE	119	93	70

'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.38

Table S1518. Gene #152: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C13ORF33 MUTATED	6	1	0
C13ORF33 WILD-TYPE	151	62	69

'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0806 (Fisher's exact test), Q value = 0.21

Table S1519. Gene #152: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C13ORF33 MUTATED	1	0	0	4	0	1
C13ORF33 WILD-TYPE	32	19	59	35	16	44

'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.52

Table S1520. Gene #152: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C13ORF33 MUTATED	2	1	0	1	2	0
C13ORF33 WILD-TYPE	45	38	35	31	21	35

'OTX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S1521. Gene #153: 'OTX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OTX2 MUTATED	0	7	1	1	0
OTX2 WILD-TYPE	79	119	26	42	12

'OTX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.16

Table S1522. Gene #153: 'OTX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OTX2 MUTATED	0	5	0	1
OTX2 WILD-TYPE	71	71	34	62

'OTX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 0.83

Table S1523. Gene #153: 'OTX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OTX2 MUTATED	0	2	1	1	3
OTX2 WILD-TYPE	16	60	50	64	52

'OTX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.067

Table S1524. Gene #153: 'OTX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OTX2 MUTATED	0	4	2	1
OTX2 WILD-TYPE	98	40	48	56

Figure S692. Get High-res Image Gene #153: 'OTX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OTX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0922 (Fisher's exact test), Q value = 0.22

Table S1525. Gene #153: 'OTX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OTX2 MUTATED	3	2	0	3	0
OTX2 WILD-TYPE	59	57	40	34	59

'OTX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.41

Table S1526. Gene #153: 'OTX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OTX2 MUTATED	3	0	5
OTX2 WILD-TYPE	103	54	92

'OTX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00128 (Fisher's exact test), Q value = 0.021

Table S1527. Gene #153: 'OTX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OTX2 MUTATED	9	0	0
OTX2 WILD-TYPE	114	95	71

Figure S693. Get High-res Image Gene #153: 'OTX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OTX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S1528. Gene #153: 'OTX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OTX2 MUTATED	8	1	0
OTX2 WILD-TYPE	149	62	69

'OTX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.12

Table S1529. Gene #153: 'OTX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OTX2 MUTATED	1	3	2	0	0	0
OTX2 WILD-TYPE	32	16	57	39	16	45

Figure S694. Get High-res Image Gene #153: 'OTX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'OTX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0736 (Fisher's exact test), Q value = 0.2

Table S1530. Gene #153: 'OTX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OTX2 MUTATED	4	0	2	0	0	0
OTX2 WILD-TYPE	43	39	33	32	23	35

'KIAA0195 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.087

Table S1531. Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA0195 MUTATED	0	12	2	1	0
KIAA0195 WILD-TYPE	79	114	25	42	12

Figure S695. Get High-res Image Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0195 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.0093

Table S1532. Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA0195 MUTATED	0	11	2	1
KIAA0195 WILD-TYPE	71	65	32	62

Figure S696. Get High-res Image Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0195 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0498 (Fisher's exact test), Q value = 0.16

Table S1533. Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIAA0195 MUTATED	0	3	5	0	5
KIAA0195 WILD-TYPE	16	59	46	65	50

Figure S697. Get High-res Image Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA0195 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S1534. Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIAA0195 MUTATED	2	10	1	0
KIAA0195 WILD-TYPE	96	34	49	57

Figure S698. Get High-res Image Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00066 (Fisher's exact test), Q value = 0.014

Table S1535. Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIAA0195 MUTATED	7	1	0	5	0
KIAA0195 WILD-TYPE	55	58	40	32	59

Figure S699. Get High-res Image Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0051

Table S1536. Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIAA0195 MUTATED	1	0	12
KIAA0195 WILD-TYPE	105	54	85

Figure S700. Get High-res Image Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00489 (Fisher's exact test), Q value = 0.044

Table S1537. Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIAA0195 MUTATED	13	1	2
KIAA0195 WILD-TYPE	110	94	69

Figure S701. Get High-res Image Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00232 (Fisher's exact test), Q value = 0.03

Table S1538. Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIAA0195 MUTATED	15	1	0
KIAA0195 WILD-TYPE	142	62	69

Figure S702. Get High-res Image Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 0.19

Table S1539. Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIAA0195 MUTATED	4	1	1	5	0	1
KIAA0195 WILD-TYPE	29	18	58	34	16	44

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.008

Table S1540. Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIAA0195 MUTATED	9	1	0	0	2	0
KIAA0195 WILD-TYPE	38	38	35	32	21	35

Figure S703. Get High-res Image Gene #154: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00749 (Fisher's exact test), Q value = 0.056

Table S1541. Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLEKHA5 MUTATED	0	11	0	2	2
PLEKHA5 WILD-TYPE	79	115	27	41	10

Figure S704. Get High-res Image Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.01

Table S1542. Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLEKHA5 MUTATED	0	9	2	0
PLEKHA5 WILD-TYPE	71	67	32	63

Figure S705. Get High-res Image Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.15

Table S1543. Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PLEKHA5 MUTATED	0	7	3	0	3
PLEKHA5 WILD-TYPE	16	55	48	65	52

Figure S706. Get High-res Image Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.082

Table S1544. Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PLEKHA5 MUTATED	2	6	4	1
PLEKHA5 WILD-TYPE	96	38	46	56

Figure S707. Get High-res Image Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00048 (Fisher's exact test), Q value = 0.012

Table S1545. Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PLEKHA5 MUTATED	9	1	0	3	0
PLEKHA5 WILD-TYPE	53	58	40	34	59

Figure S708. Get High-res Image Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00821 (Fisher's exact test), Q value = 0.06

Table S1546. Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PLEKHA5 MUTATED	3	0	10
PLEKHA5 WILD-TYPE	103	54	87

Figure S709. Get High-res Image Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0064

Table S1547. Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PLEKHA5 MUTATED	14	1	0
PLEKHA5 WILD-TYPE	109	94	71

Figure S710. Get High-res Image Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00042 (Fisher's exact test), Q value = 0.011

Table S1548. Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PLEKHA5 MUTATED	15	0	0
PLEKHA5 WILD-TYPE	142	63	69

Figure S711. Get High-res Image Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.26

Table S1549. Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PLEKHA5 MUTATED	1	3	3	2	0	0
PLEKHA5 WILD-TYPE	32	16	56	37	16	45

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00092 (Fisher's exact test), Q value = 0.017

Table S1550. Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PLEKHA5 MUTATED	6	0	0	0	3	0
PLEKHA5 WILD-TYPE	41	39	35	32	20	35

Figure S712. Get High-res Image Gene #155: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EIF4G3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S1551. Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EIF4G3 MUTATED	2	10	2	0	0
EIF4G3 WILD-TYPE	77	116	25	43	12

'EIF4G3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00629 (Fisher's exact test), Q value = 0.051

Table S1552. Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EIF4G3 MUTATED	2	9	3	0
EIF4G3 WILD-TYPE	69	67	31	63

Figure S713. Get High-res Image Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EIF4G3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.25

Table S1553. Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EIF4G3 MUTATED	0	3	3	0	5
EIF4G3 WILD-TYPE	16	59	48	65	50

'EIF4G3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0298 (Fisher's exact test), Q value = 0.12

Table S1554. Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EIF4G3 MUTATED	1	5	3	2
EIF4G3 WILD-TYPE	97	39	47	55

Figure S714. Get High-res Image Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EIF4G3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00198 (Fisher's exact test), Q value = 0.027

Table S1555. Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EIF4G3 MUTATED	9	0	0	2	2
EIF4G3 WILD-TYPE	53	59	40	35	57

Figure S715. Get High-res Image Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EIF4G3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00826 (Fisher's exact test), Q value = 0.06

Table S1556. Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EIF4G3 MUTATED	3	0	10
EIF4G3 WILD-TYPE	103	54	87

Figure S716. Get High-res Image Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.075

Table S1557. Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EIF4G3 MUTATED	12	2	1
EIF4G3 WILD-TYPE	111	93	70

Figure S717. Get High-res Image Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.092

Table S1558. Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EIF4G3 MUTATED	13	0	2
EIF4G3 WILD-TYPE	144	63	67

Figure S718. Get High-res Image Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.57

Table S1559. Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EIF4G3 MUTATED	4	1	4	4	0	1
EIF4G3 WILD-TYPE	29	18	55	35	16	44

'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 0.17

Table S1560. Gene #156: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EIF4G3 MUTATED	5	0	3	1	4	1
EIF4G3 WILD-TYPE	42	39	32	31	19	34

'RB1CC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.1

Table S1561. Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RB1CC1 MUTATED	0	7	0	1	2
RB1CC1 WILD-TYPE	79	119	27	42	10

Figure S719. Get High-res Image Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RB1CC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00615 (Fisher's exact test), Q value = 0.051

Table S1562. Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RB1CC1 MUTATED	0	7	0	1
RB1CC1 WILD-TYPE	71	69	34	62

Figure S720. Get High-res Image Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RB1CC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.39

Table S1563. Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RB1CC1 MUTATED	0	4	2	0	3
RB1CC1 WILD-TYPE	16	58	49	65	52

'RB1CC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0483 (Fisher's exact test), Q value = 0.15

Table S1564. Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RB1CC1 MUTATED	1	4	3	1
RB1CC1 WILD-TYPE	97	40	47	56

Figure S721. Get High-res Image Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RB1CC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00409 (Fisher's exact test), Q value = 0.04

Table S1565. Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RB1CC1 MUTATED	7	1	0	1	0
RB1CC1 WILD-TYPE	55	58	40	36	59

Figure S722. Get High-res Image Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RB1CC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0483 (Fisher's exact test), Q value = 0.15

Table S1566. Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RB1CC1 MUTATED	1	1	7
RB1CC1 WILD-TYPE	105	53	90

Figure S723. Get High-res Image Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S1567. Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RB1CC1 MUTATED	7	1	2
RB1CC1 WILD-TYPE	116	94	69

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.49

Table S1568. Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RB1CC1 MUTATED	8	1	1
RB1CC1 WILD-TYPE	149	62	68

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.27

Table S1569. Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RB1CC1 MUTATED	1	2	1	3	0	0
RB1CC1 WILD-TYPE	32	17	58	36	16	45

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.4

Table S1570. Gene #157: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RB1CC1 MUTATED	3	0	1	1	2	0
RB1CC1 WILD-TYPE	44	39	34	31	21	35

'DYRK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0962 (Fisher's exact test), Q value = 0.23

Table S1571. Gene #158: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DYRK4 MUTATED	0	7	0	1	1
DYRK4 WILD-TYPE	79	119	27	42	11

'DYRK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00871 (Fisher's exact test), Q value = 0.062

Table S1572. Gene #158: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DYRK4 MUTATED	0	6	1	0
DYRK4 WILD-TYPE	71	70	33	63

Figure S724. Get High-res Image Gene #158: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DYRK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S1573. Gene #158: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DYRK4 MUTATED	0	2	2	1	3
DYRK4 WILD-TYPE	16	60	49	64	52

'DYRK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0881 (Fisher's exact test), Q value = 0.22

Table S1574. Gene #158: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DYRK4 MUTATED	1	4	1	2
DYRK4 WILD-TYPE	97	40	49	55

'DYRK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0959 (Fisher's exact test), Q value = 0.23

Table S1575. Gene #158: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DYRK4 MUTATED	5	2	2	0	0
DYRK4 WILD-TYPE	57	57	38	37	59

'DYRK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.07

Table S1576. Gene #158: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DYRK4 MUTATED	0	2	7
DYRK4 WILD-TYPE	106	52	90

Figure S725. Get High-res Image Gene #158: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DYRK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.49

Table S1577. Gene #158: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DYRK4 MUTATED	5	1	3
DYRK4 WILD-TYPE	118	94	68

'DYRK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S1578. Gene #158: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DYRK4 MUTATED	7	1	1
DYRK4 WILD-TYPE	150	62	68

'DYRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.11

Table S1579. Gene #158: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DYRK4 MUTATED	1	1	0	4	0	0
DYRK4 WILD-TYPE	32	18	59	35	16	45

Figure S726. Get High-res Image Gene #158: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DYRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.086 (Fisher's exact test), Q value = 0.21

Table S1580. Gene #158: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DYRK4 MUTATED	2	0	0	3	1	0
DYRK4 WILD-TYPE	45	39	35	29	22	35

'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 0.82

Table S1581. Gene #159: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDKN2A MUTATED	3	6	0	3	0
CDKN2A WILD-TYPE	76	120	27	40	12

'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.72

Table S1582. Gene #159: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDKN2A MUTATED	4	4	0	2
CDKN2A WILD-TYPE	67	72	34	61

'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.55

Table S1583. Gene #159: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CDKN2A MUTATED	0	1	4	1	2
CDKN2A WILD-TYPE	16	61	47	64	53

'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.51

Table S1584. Gene #159: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CDKN2A MUTATED	5	2	0	1
CDKN2A WILD-TYPE	93	42	50	56

'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.62

Table S1585. Gene #159: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CDKN2A MUTATED	5	1	1	2	2
CDKN2A WILD-TYPE	57	58	39	35	57

'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.61

Table S1586. Gene #159: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CDKN2A MUTATED	4	1	6
CDKN2A WILD-TYPE	102	53	91

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0614 (Fisher's exact test), Q value = 0.18

Table S1587. Gene #159: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CDKN2A MUTATED	9	1	2
CDKN2A WILD-TYPE	114	94	69

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.69

Table S1588. Gene #159: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CDKN2A MUTATED	8	1	3
CDKN2A WILD-TYPE	149	62	66

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S1589. Gene #159: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CDKN2A MUTATED	1	3	1	3	0	1
CDKN2A WILD-TYPE	32	16	58	36	16	44

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 0.8

Table S1590. Gene #159: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CDKN2A MUTATED	4	1	1	1	0	2
CDKN2A WILD-TYPE	43	38	34	31	23	33

'TRIP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.33

Table S1591. Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TRIP10 MUTATED	0	4	1	1	1
TRIP10 WILD-TYPE	79	122	26	42	11

'TRIP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.12

Table S1592. Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TRIP10 MUTATED	0	6	0	2
TRIP10 WILD-TYPE	71	70	34	61

Figure S727. Get High-res Image Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRIP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.096

Table S1593. Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TRIP10 MUTATED	2	3	2	0	0
TRIP10 WILD-TYPE	14	59	49	65	55

Figure S728. Get High-res Image Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TRIP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S1594. Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TRIP10 MUTATED	2	3	2	0
TRIP10 WILD-TYPE	96	41	48	57

'TRIP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.1

Table S1595. Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TRIP10 MUTATED	5	0	1	2	0
TRIP10 WILD-TYPE	57	59	39	35	59

Figure S729. Get High-res Image Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TRIP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 0.2

Table S1596. Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TRIP10 MUTATED	2	0	6
TRIP10 WILD-TYPE	104	54	91

'TRIP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.1

Table S1597. Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TRIP10 MUTATED	7	0	1
TRIP10 WILD-TYPE	116	95	70

Figure S730. Get High-res Image Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TRIP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.31

Table S1598. Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TRIP10 MUTATED	7	1	0
TRIP10 WILD-TYPE	150	62	69

'TRIP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.34

Table S1599. Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TRIP10 MUTATED	2	0	4	0	0	0
TRIP10 WILD-TYPE	31	19	55	39	16	45

'TRIP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.11

Table S1600. Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TRIP10 MUTATED	2	0	4	0	0	0
TRIP10 WILD-TYPE	45	39	31	32	23	35

Figure S731. Get High-res Image Gene #160: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0042

Table S1601. Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CTNND1 MUTATED	0	17	0	0	2
CTNND1 WILD-TYPE	79	109	27	43	10

Figure S732. Get High-res Image Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTNND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S1602. Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CTNND1 MUTATED	0	12	3	1
CTNND1 WILD-TYPE	71	64	31	62

Figure S733. Get High-res Image Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTNND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.61

Table S1603. Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CTNND1 MUTATED	1	7	4	2	4
CTNND1 WILD-TYPE	15	55	47	63	51

'CTNND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S1604. Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CTNND1 MUTATED	4	6	5	3
CTNND1 WILD-TYPE	94	38	45	54

'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00189 (Fisher's exact test), Q value = 0.027

Table S1605. Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CTNND1 MUTATED	9	2	1	5	0
CTNND1 WILD-TYPE	53	57	39	32	59

Figure S734. Get High-res Image Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 0.18

Table S1606. Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CTNND1 MUTATED	3	3	11
CTNND1 WILD-TYPE	103	51	86

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0814 (Fisher's exact test), Q value = 0.21

Table S1607. Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CTNND1 MUTATED	13	4	2
CTNND1 WILD-TYPE	110	91	69

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00046 (Fisher's exact test), Q value = 0.011

Table S1608. Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CTNND1 MUTATED	18	1	0
CTNND1 WILD-TYPE	139	62	69

Figure S735. Get High-res Image Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S1609. Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CTNND1 MUTATED	1	3	6	4	0	1
CTNND1 WILD-TYPE	32	16	53	35	16	44

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.092

Table S1610. Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CTNND1 MUTATED	2	1	4	3	5	0
CTNND1 WILD-TYPE	45	38	31	29	18	35

Figure S736. Get High-res Image Gene #161: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ATP2A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00378 (Fisher's exact test), Q value = 0.038

Table S1611. Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ATP2A1 MUTATED	0	10	2	0	2
ATP2A1 WILD-TYPE	79	116	25	43	10

Figure S737. Get High-res Image Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP2A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.013

Table S1612. Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ATP2A1 MUTATED	1	11	0	1
ATP2A1 WILD-TYPE	70	65	34	62

Figure S738. Get High-res Image Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP2A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0716 (Fisher's exact test), Q value = 0.19

Table S1613. Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ATP2A1 MUTATED	0	6	3	0	2
ATP2A1 WILD-TYPE	16	56	48	65	53

'ATP2A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.24

Table S1614. Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ATP2A1 MUTATED	4	4	3	0
ATP2A1 WILD-TYPE	94	40	47	57

'ATP2A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.011

Table S1615. Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ATP2A1 MUTATED	6	0	2	6	0
ATP2A1 WILD-TYPE	56	59	38	31	59

Figure S739. Get High-res Image Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATP2A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00102 (Fisher's exact test), Q value = 0.018

Table S1616. Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ATP2A1 MUTATED	1	1	12
ATP2A1 WILD-TYPE	105	53	85

Figure S740. Get High-res Image Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.077

Table S1617. Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ATP2A1 MUTATED	12	2	1
ATP2A1 WILD-TYPE	111	93	70

Figure S741. Get High-res Image Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 0.14

Table S1618. Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ATP2A1 MUTATED	13	1	1
ATP2A1 WILD-TYPE	144	62	68

Figure S742. Get High-res Image Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.27

Table S1619. Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ATP2A1 MUTATED	2	3	4	3	0	0
ATP2A1 WILD-TYPE	31	16	55	36	16	45

'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S1620. Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ATP2A1 MUTATED	10	0	1	0	1	0
ATP2A1 WILD-TYPE	37	39	34	32	22	35

Figure S743. Get High-res Image Gene #162: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IFRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S1621. Gene #163: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IFRD1 MUTATED	0	7	1	0	0
IFRD1 WILD-TYPE	79	119	26	43	12

'IFRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.07

Table S1622. Gene #163: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IFRD1 MUTATED	0	3	3	0
IFRD1 WILD-TYPE	71	73	31	63

Figure S744. Get High-res Image Gene #163: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IFRD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.15

Table S1623. Gene #163: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IFRD1 MUTATED	0	1	1	0	5
IFRD1 WILD-TYPE	16	61	50	65	50

Figure S745. Get High-res Image Gene #163: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IFRD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.58

Table S1624. Gene #163: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IFRD1 MUTATED	2	3	1	1
IFRD1 WILD-TYPE	96	41	49	56

'IFRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S1625. Gene #163: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IFRD1 MUTATED	4	1	1	2	0
IFRD1 WILD-TYPE	58	58	39	35	59

'IFRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.41

Table S1626. Gene #163: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IFRD1 MUTATED	3	0	5
IFRD1 WILD-TYPE	103	54	92

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00273 (Fisher's exact test), Q value = 0.032

Table S1627. Gene #163: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IFRD1 MUTATED	8	0	0
IFRD1 WILD-TYPE	115	95	71

Figure S746. Get High-res Image Gene #163: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0445 (Fisher's exact test), Q value = 0.15

Table S1628. Gene #163: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IFRD1 MUTATED	8	0	0
IFRD1 WILD-TYPE	149	63	69

Figure S747. Get High-res Image Gene #163: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.54

Table S1629. Gene #163: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IFRD1 MUTATED	0	1	3	2	0	0
IFRD1 WILD-TYPE	33	18	56	37	16	45

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.47

Table S1630. Gene #163: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IFRD1 MUTATED	2	0	1	1	2	0
IFRD1 WILD-TYPE	45	39	34	31	21	35

'STAB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0061

Table S1631. Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STAB1 MUTATED	0	21	1	3	2
STAB1 WILD-TYPE	79	105	26	40	10

Figure S748. Get High-res Image Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'STAB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0025

Table S1632. Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
STAB1 MUTATED	0	17	3	3
STAB1 WILD-TYPE	71	59	31	60

Figure S749. Get High-res Image Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STAB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00197 (Fisher's exact test), Q value = 0.027

Table S1633. Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
STAB1 MUTATED	2	6	10	0	5
STAB1 WILD-TYPE	14	56	41	65	50

Figure S750. Get High-res Image Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'STAB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S1634. Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
STAB1 MUTATED	4	15	3	1
STAB1 WILD-TYPE	94	29	47	56

Figure S751. Get High-res Image Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STAB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0042

Table S1635. Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
STAB1 MUTATED	15	3	3	3	0
STAB1 WILD-TYPE	47	56	37	34	59

Figure S752. Get High-res Image Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STAB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0053

Table S1636. Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
STAB1 MUTATED	3	2	19
STAB1 WILD-TYPE	103	52	78

Figure S753. Get High-res Image Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'STAB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0073

Table S1637. Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
STAB1 MUTATED	22	3	3
STAB1 WILD-TYPE	101	92	68

Figure S754. Get High-res Image Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'STAB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00673 (Fisher's exact test), Q value = 0.054

Table S1638. Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
STAB1 MUTATED	23	3	2
STAB1 WILD-TYPE	134	60	67

Figure S755. Get High-res Image Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'STAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.74

Table S1639. Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
STAB1 MUTATED	3	2	6	6	0	3
STAB1 WILD-TYPE	30	17	53	33	16	42

'STAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S1640. Gene #164: 'STAB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
STAB1 MUTATED	5	3	5	5	2	0
STAB1 WILD-TYPE	42	36	30	27	21	35

'FBXO21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.11

Table S1641. Gene #165: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FBXO21 MUTATED	0	10	0	1	1
FBXO21 WILD-TYPE	79	116	27	42	11

Figure S756. Get High-res Image Gene #165: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXO21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S1642. Gene #165: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FBXO21 MUTATED	0	4	0	2
FBXO21 WILD-TYPE	71	72	34	61

'FBXO21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.77

Table S1643. Gene #165: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FBXO21 MUTATED	0	5	2	2	2
FBXO21 WILD-TYPE	16	57	49	63	53

'FBXO21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.07

Table S1644. Gene #165: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FBXO21 MUTATED	1	6	2	2
FBXO21 WILD-TYPE	97	38	48	55

Figure S757. Get High-res Image Gene #165: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FBXO21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.078

Table S1645. Gene #165: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FBXO21 MUTATED	7	3	0	1	0
FBXO21 WILD-TYPE	55	56	40	36	59

Figure S758. Get High-res Image Gene #165: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FBXO21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.34

Table S1646. Gene #165: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FBXO21 MUTATED	2	2	7
FBXO21 WILD-TYPE	104	52	90

'FBXO21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.069 (Fisher's exact test), Q value = 0.19

Table S1647. Gene #165: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FBXO21 MUTATED	8	4	0
FBXO21 WILD-TYPE	115	91	71

'FBXO21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.52

Table S1648. Gene #165: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FBXO21 MUTATED	9	2	1
FBXO21 WILD-TYPE	148	61	68

'FBXO21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.49

Table S1649. Gene #165: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FBXO21 MUTATED	0	0	1	3	1	1
FBXO21 WILD-TYPE	33	19	58	36	15	44

'FBXO21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.71

Table S1650. Gene #165: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FBXO21 MUTATED	1	1	1	0	2	1
FBXO21 WILD-TYPE	46	38	34	32	21	34

'GALNTL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.38

Table S1651. Gene #166: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GALNTL1 MUTATED	1	8	1	0	0
GALNTL1 WILD-TYPE	78	118	26	43	12

'GALNTL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.71

Table S1652. Gene #166: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GALNTL1 MUTATED	1	4	1	3
GALNTL1 WILD-TYPE	70	72	33	60

'GALNTL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 0.97

Table S1653. Gene #166: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GALNTL1 MUTATED	0	3	3	2	2
GALNTL1 WILD-TYPE	16	59	48	63	53

'GALNTL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S1654. Gene #166: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GALNTL1 MUTATED	2	4	2	2
GALNTL1 WILD-TYPE	96	40	48	55

'GALNTL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 0.86

Table S1655. Gene #166: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GALNTL1 MUTATED	2	2	0	0	1
GALNTL1 WILD-TYPE	60	57	40	37	58

'GALNTL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1656. Gene #166: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GALNTL1 MUTATED	2	1	2
GALNTL1 WILD-TYPE	104	53	95

'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.52

Table S1657. Gene #166: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GALNTL1 MUTATED	4	5	1
GALNTL1 WILD-TYPE	119	90	70

'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.68

Table S1658. Gene #166: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GALNTL1 MUTATED	6	3	1
GALNTL1 WILD-TYPE	151	60	68

'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S1659. Gene #166: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GALNTL1 MUTATED	1	0	2	2	1	2
GALNTL1 WILD-TYPE	32	19	57	37	15	43

'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S1660. Gene #166: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GALNTL1 MUTATED	1	2	2	1	1	1
GALNTL1 WILD-TYPE	46	37	33	31	22	34

'HOXD8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.4

Table S1661. Gene #167: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HOXD8 MUTATED	0	6	0	1	0
HOXD8 WILD-TYPE	79	120	27	42	12

'HOXD8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.49

Table S1662. Gene #167: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HOXD8 MUTATED	0	3	1	1
HOXD8 WILD-TYPE	71	73	33	62

'HOXD8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.39

Table S1663. Gene #167: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HOXD8 MUTATED	1	3	2	0	1
HOXD8 WILD-TYPE	15	59	49	65	54

'HOXD8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.57

Table S1664. Gene #167: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HOXD8 MUTATED	3	2	2	0
HOXD8 WILD-TYPE	95	42	48	57

'HOXD8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.076

Table S1665. Gene #167: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HOXD8 MUTATED	5	0	1	0	0
HOXD8 WILD-TYPE	57	59	39	37	59

Figure S759. Get High-res Image Gene #167: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HOXD8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.75

Table S1666. Gene #167: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HOXD8 MUTATED	3	0	3
HOXD8 WILD-TYPE	103	54	94

'HOXD8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00779 (Fisher's exact test), Q value = 0.057

Table S1667. Gene #167: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HOXD8 MUTATED	7	0	0
HOXD8 WILD-TYPE	116	95	71

Figure S760. Get High-res Image Gene #167: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HOXD8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.49

Table S1668. Gene #167: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HOXD8 MUTATED	6	0	1
HOXD8 WILD-TYPE	151	63	68

'HOXD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.46

Table S1669. Gene #167: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HOXD8 MUTATED	0	0	4	1	0	0
HOXD8 WILD-TYPE	33	19	55	38	16	45

'HOXD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.31

Table S1670. Gene #167: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HOXD8 MUTATED	1	0	3	1	0	0
HOXD8 WILD-TYPE	46	39	32	31	23	35

'AXIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S1671. Gene #168: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AXIN2 MUTATED	1	11	1	1	1
AXIN2 WILD-TYPE	78	115	26	42	11

'AXIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00556 (Fisher's exact test), Q value = 0.048

Table S1672. Gene #168: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AXIN2 MUTATED	0	9	1	2
AXIN2 WILD-TYPE	71	67	33	61

Figure S761. Get High-res Image Gene #168: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AXIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 0.84

Table S1673. Gene #168: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
AXIN2 MUTATED	0	4	3	2	4
AXIN2 WILD-TYPE	16	58	48	63	51

'AXIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0881 (Fisher's exact test), Q value = 0.22

Table S1674. Gene #168: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
AXIN2 MUTATED	3	6	2	2
AXIN2 WILD-TYPE	95	38	48	55

'AXIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00444 (Fisher's exact test), Q value = 0.042

Table S1675. Gene #168: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
AXIN2 MUTATED	7	2	0	4	0
AXIN2 WILD-TYPE	55	57	40	33	59

Figure S762. Get High-res Image Gene #168: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AXIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.073

Table S1676. Gene #168: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
AXIN2 MUTATED	1	3	9
AXIN2 WILD-TYPE	105	51	88

Figure S763. Get High-res Image Gene #168: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0693 (Fisher's exact test), Q value = 0.19

Table S1677. Gene #168: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
AXIN2 MUTATED	11	2	2
AXIN2 WILD-TYPE	112	93	69

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.27

Table S1678. Gene #168: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
AXIN2 MUTATED	12	2	1
AXIN2 WILD-TYPE	145	61	68

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0874 (Fisher's exact test), Q value = 0.22

Table S1679. Gene #168: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
AXIN2 MUTATED	1	2	2	6	0	1
AXIN2 WILD-TYPE	32	17	57	33	16	44

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.48

Table S1680. Gene #168: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
AXIN2 MUTATED	5	1	2	2	2	0
AXIN2 WILD-TYPE	42	38	33	30	21	35

'TBC1D22B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.49

Table S1681. Gene #169: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TBC1D22B MUTATED	0	5	1	1	0
TBC1D22B WILD-TYPE	79	121	26	42	12

'TBC1D22B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.1

Table S1682. Gene #169: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TBC1D22B MUTATED	0	4	2	0
TBC1D22B WILD-TYPE	71	72	32	63

Figure S764. Get High-res Image Gene #169: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TBC1D22B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S1683. Gene #169: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TBC1D22B MUTATED	0	0	2	0	3
TBC1D22B WILD-TYPE	16	62	49	65	52

'TBC1D22B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0055

Table S1684. Gene #169: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TBC1D22B MUTATED	0	5	0	0
TBC1D22B WILD-TYPE	98	39	50	57

Figure S765. Get High-res Image Gene #169: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TBC1D22B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.24

Table S1685. Gene #169: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TBC1D22B MUTATED	3	0	1	2	0
TBC1D22B WILD-TYPE	59	59	39	35	59

'TBC1D22B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S1686. Gene #169: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TBC1D22B MUTATED	1	0	5
TBC1D22B WILD-TYPE	105	54	92

'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.52

Table S1687. Gene #169: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TBC1D22B MUTATED	5	1	1
TBC1D22B WILD-TYPE	118	94	70

'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S1688. Gene #169: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TBC1D22B MUTATED	6	1	0
TBC1D22B WILD-TYPE	151	62	69

'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.6

Table S1689. Gene #169: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TBC1D22B MUTATED	0	0	1	3	0	1
TBC1D22B WILD-TYPE	33	19	58	36	16	44

'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 0.84

Table S1690. Gene #169: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TBC1D22B MUTATED	2	1	1	0	1	0
TBC1D22B WILD-TYPE	45	38	34	32	22	35

'CFI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0702 (Fisher's exact test), Q value = 0.19

Table S1691. Gene #170: 'CFI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CFI MUTATED	1	8	0	1	2
CFI WILD-TYPE	78	118	27	42	10

'CFI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S1692. Gene #170: 'CFI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CFI MUTATED	1	6	0	2
CFI WILD-TYPE	70	70	34	61

'CFI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 0.92

Table S1693. Gene #170: 'CFI MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CFI MUTATED	0	4	2	2	3
CFI WILD-TYPE	16	58	49	63	52

'CFI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.42

Table S1694. Gene #170: 'CFI MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CFI MUTATED	3	4	3	1
CFI WILD-TYPE	95	40	47	56

'CFI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 0.21

Table S1695. Gene #170: 'CFI MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CFI MUTATED	7	1	1	2	1
CFI WILD-TYPE	55	58	39	35	58

'CFI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S1696. Gene #170: 'CFI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CFI MUTATED	2	2	8
CFI WILD-TYPE	104	52	89

'CFI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.7

Table S1697. Gene #170: 'CFI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CFI MUTATED	7	3	2
CFI WILD-TYPE	116	92	69

'CFI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S1698. Gene #170: 'CFI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CFI MUTATED	10	1	1
CFI WILD-TYPE	147	62	68

'CFI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.51

Table S1699. Gene #170: 'CFI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CFI MUTATED	1	0	2	3	1	0
CFI WILD-TYPE	32	19	57	36	15	45

'CFI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.72

Table S1700. Gene #170: 'CFI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CFI MUTATED	1	0	2	2	1	1
CFI WILD-TYPE	46	39	33	30	22	34

'MFRP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.099 (Fisher's exact test), Q value = 0.23

Table S1701. Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MFRP MUTATED	0	9	1	2	0
MFRP WILD-TYPE	79	117	26	41	12

'MFRP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00126 (Fisher's exact test), Q value = 0.021

Table S1702. Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MFRP MUTATED	0	8	2	0
MFRP WILD-TYPE	71	68	32	63

Figure S766. Get High-res Image Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MFRP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S1703. Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MFRP MUTATED	0	3	3	0	5
MFRP WILD-TYPE	16	59	48	65	50

'MFRP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00127 (Fisher's exact test), Q value = 0.021

Table S1704. Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MFRP MUTATED	2	7	2	0
MFRP WILD-TYPE	96	37	48	57

Figure S767. Get High-res Image Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MFRP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00262 (Fisher's exact test), Q value = 0.032

Table S1705. Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MFRP MUTATED	6	0	1	4	0
MFRP WILD-TYPE	56	59	39	33	59

Figure S768. Get High-res Image Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MFRP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.073

Table S1706. Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MFRP MUTATED	1	1	9
MFRP WILD-TYPE	105	53	88

Figure S769. Get High-res Image Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MFRP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.069

Table S1707. Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MFRP MUTATED	10	2	0
MFRP WILD-TYPE	113	93	71

Figure S770. Get High-res Image Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MFRP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.029 (Fisher's exact test), Q value = 0.12

Table S1708. Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MFRP MUTATED	11	0	1
MFRP WILD-TYPE	146	63	68

Figure S771. Get High-res Image Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MFRP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.39

Table S1709. Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MFRP MUTATED	2	1	1	3	0	0
MFRP WILD-TYPE	31	18	58	36	16	45

'MFRP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.39

Table S1710. Gene #171: 'MFRP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MFRP MUTATED	4	0	1	1	1	0
MFRP WILD-TYPE	43	39	34	31	22	35

'PALB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.36

Table S1711. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PALB2 MUTATED	0	7	1	1	0
PALB2 WILD-TYPE	79	119	26	42	12

'PALB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 0.2

Table S1712. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PALB2 MUTATED	0	4	3	2
PALB2 WILD-TYPE	71	72	31	61

'PALB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 0.23

Table S1713. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PALB2 MUTATED	1	5	1	0	2
PALB2 WILD-TYPE	15	57	50	65	53

'PALB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00712 (Fisher's exact test), Q value = 0.055

Table S1714. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PALB2 MUTATED	1	4	4	0
PALB2 WILD-TYPE	97	40	46	57

Figure S772. Get High-res Image Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PALB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00255 (Fisher's exact test), Q value = 0.032

Table S1715. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PALB2 MUTATED	6	0	0	1	0
PALB2 WILD-TYPE	56	59	40	36	59

Figure S773. Get High-res Image Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PALB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.27

Table S1716. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PALB2 MUTATED	2	0	5
PALB2 WILD-TYPE	104	54	92

'PALB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.2

Table S1717. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PALB2 MUTATED	7	2	0
PALB2 WILD-TYPE	116	93	71

'PALB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.35

Table S1718. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PALB2 MUTATED	7	2	0
PALB2 WILD-TYPE	150	61	69

'PALB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 0.89

Table S1719. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PALB2 MUTATED	1	0	4	2	0	1
PALB2 WILD-TYPE	32	19	55	37	16	44

'PALB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S1720. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PALB2 MUTATED	2	1	4	0	1	0
PALB2 WILD-TYPE	45	38	31	32	22	35

'FAM46D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.56

Table S1721. Gene #173: 'FAM46D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM46D MUTATED	3	4	1	0	1
FAM46D WILD-TYPE	76	122	26	43	11

'FAM46D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.53

Table S1722. Gene #173: 'FAM46D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM46D MUTATED	1	4	0	3
FAM46D WILD-TYPE	70	72	34	60

'FAM46D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.2

Table S1723. Gene #173: 'FAM46D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FAM46D MUTATED	2	3	1	0	2
FAM46D WILD-TYPE	14	59	50	65	53

'FAM46D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.77

Table S1724. Gene #173: 'FAM46D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FAM46D MUTATED	3	1	3	1
FAM46D WILD-TYPE	95	43	47	56

'FAM46D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.28

Table S1725. Gene #173: 'FAM46D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FAM46D MUTATED	1	2	0	4	2
FAM46D WILD-TYPE	61	57	40	33	57

'FAM46D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 0.77

Table S1726. Gene #173: 'FAM46D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FAM46D MUTATED	3	3	3
FAM46D WILD-TYPE	103	51	94

'FAM46D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 0.95

Table S1727. Gene #173: 'FAM46D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FAM46D MUTATED	5	2	2
FAM46D WILD-TYPE	118	93	69

'FAM46D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.7

Table S1728. Gene #173: 'FAM46D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FAM46D MUTATED	4	3	2
FAM46D WILD-TYPE	153	60	67

'FAM46D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.51

Table S1729. Gene #173: 'FAM46D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FAM46D MUTATED	2	2	2	0	0	2
FAM46D WILD-TYPE	31	17	57	39	16	43

'FAM46D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.72

Table S1730. Gene #173: 'FAM46D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FAM46D MUTATED	2	3	1	0	0	2
FAM46D WILD-TYPE	45	36	34	32	23	33

'DSTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S1731. Gene #174: 'DSTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DSTN MUTATED	0	4	0	0	0
DSTN WILD-TYPE	79	122	27	43	12

'DSTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S1732. Gene #174: 'DSTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DSTN MUTATED	0	3	0	1
DSTN WILD-TYPE	71	73	34	62

'DSTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.26

Table S1733. Gene #174: 'DSTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DSTN MUTATED	1	1	0	0	2
DSTN WILD-TYPE	15	61	51	65	53

'DSTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.4

Table S1734. Gene #174: 'DSTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DSTN MUTATED	1	2	1	0
DSTN WILD-TYPE	97	42	49	57

'DSTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.42

Table S1735. Gene #174: 'DSTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DSTN MUTATED	2	0	0	1	0
DSTN WILD-TYPE	60	59	40	36	59

'DSTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.71

Table S1736. Gene #174: 'DSTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DSTN MUTATED	1	0	2
DSTN WILD-TYPE	105	54	95

'DSTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 0.12

Table S1737. Gene #174: 'DSTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DSTN MUTATED	5	0	0
DSTN WILD-TYPE	118	95	71

Figure S774. Get High-res Image Gene #174: 'DSTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DSTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.4

Table S1738. Gene #174: 'DSTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DSTN MUTATED	5	0	0
DSTN WILD-TYPE	152	63	69

'DSTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.5

Table S1739. Gene #174: 'DSTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DSTN MUTATED	2	0	2	0	0	0
DSTN WILD-TYPE	31	19	57	39	16	45

'DSTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.46

Table S1740. Gene #174: 'DSTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DSTN MUTATED	2	0	2	0	0	0
DSTN WILD-TYPE	45	39	33	32	23	35

'PHACTR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 0.86

Table S1741. Gene #175: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PHACTR4 MUTATED	1	5	1	1	0
PHACTR4 WILD-TYPE	78	121	26	42	12

'PHACTR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00276 (Fisher's exact test), Q value = 0.033

Table S1742. Gene #175: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PHACTR4 MUTATED	0	7	1	0
PHACTR4 WILD-TYPE	71	69	33	63

Figure S775. Get High-res Image Gene #175: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHACTR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.66

Table S1743. Gene #175: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PHACTR4 MUTATED	0	2	2	0	1
PHACTR4 WILD-TYPE	16	60	49	65	54

'PHACTR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0018 (Fisher's exact test), Q value = 0.026

Table S1744. Gene #175: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PHACTR4 MUTATED	0	4	1	0
PHACTR4 WILD-TYPE	98	40	49	57

Figure S776. Get High-res Image Gene #175: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PHACTR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.13

Table S1745. Gene #175: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PHACTR4 MUTATED	4	0	0	1	0
PHACTR4 WILD-TYPE	58	59	40	36	59

Figure S777. Get High-res Image Gene #175: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PHACTR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S1746. Gene #175: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PHACTR4 MUTATED	1	0	4
PHACTR4 WILD-TYPE	105	54	93

'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.13

Table S1747. Gene #175: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PHACTR4 MUTATED	7	1	0
PHACTR4 WILD-TYPE	116	94	71

Figure S778. Get High-res Image Gene #175: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S1748. Gene #175: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PHACTR4 MUTATED	7	1	0
PHACTR4 WILD-TYPE	150	62	69

'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.72

Table S1749. Gene #175: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PHACTR4 MUTATED	0	1	4	2	0	1
PHACTR4 WILD-TYPE	33	18	55	37	16	44

'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.69

Table S1750. Gene #175: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PHACTR4 MUTATED	3	1	2	2	0	0
PHACTR4 WILD-TYPE	44	38	33	30	23	35

'ATXN2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.086

Table S1751. Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ATXN2L MUTATED	2	14	0	0	0
ATXN2L WILD-TYPE	77	112	27	43	12

Figure S779. Get High-res Image Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATXN2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00231 (Fisher's exact test), Q value = 0.03

Table S1752. Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ATXN2L MUTATED	0	10	1	2
ATXN2L WILD-TYPE	71	66	33	61

Figure S780. Get High-res Image Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATXN2L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.49

Table S1753. Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ATXN2L MUTATED	0	3	6	2	3
ATXN2L WILD-TYPE	16	59	45	63	52

'ATXN2L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.009

Table S1754. Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ATXN2L MUTATED	2	9	2	1
ATXN2L WILD-TYPE	96	35	48	56

Figure S781. Get High-res Image Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATXN2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00958 (Fisher's exact test), Q value = 0.065

Table S1755. Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ATXN2L MUTATED	9	3	1	3	0
ATXN2L WILD-TYPE	53	56	39	34	59

Figure S782. Get High-res Image Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATXN2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00085 (Fisher's exact test), Q value = 0.017

Table S1756. Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ATXN2L MUTATED	1	2	13
ATXN2L WILD-TYPE	105	52	84

Figure S783. Get High-res Image Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0034 (Fisher's exact test), Q value = 0.036

Table S1757. Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ATXN2L MUTATED	14	2	1
ATXN2L WILD-TYPE	109	93	70

Figure S784. Get High-res Image Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0718 (Fisher's exact test), Q value = 0.19

Table S1758. Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ATXN2L MUTATED	14	1	2
ATXN2L WILD-TYPE	143	62	67

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.56

Table S1759. Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ATXN2L MUTATED	1	1	3	5	1	1
ATXN2L WILD-TYPE	32	18	56	34	15	44

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 0.76

Table S1760. Gene #176: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ATXN2L MUTATED	4	1	3	1	2	1
ATXN2L WILD-TYPE	43	38	32	31	21	34

'SVIL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00149 (Fisher's exact test), Q value = 0.023

Table S1761. Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SVIL MUTATED	1	21	2	2	0
SVIL WILD-TYPE	78	105	25	41	12

Figure S785. Get High-res Image Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SVIL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.006

Table S1762. Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SVIL MUTATED	1	16	1	3
SVIL WILD-TYPE	70	60	33	60

Figure S786. Get High-res Image Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SVIL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.16

Table S1763. Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SVIL MUTATED	3	3	9	3	4
SVIL WILD-TYPE	13	59	42	62	51

Figure S787. Get High-res Image Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SVIL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0374 (Fisher's exact test), Q value = 0.14

Table S1764. Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SVIL MUTATED	6	9	2	5
SVIL WILD-TYPE	92	35	48	52

Figure S788. Get High-res Image Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00051 (Fisher's exact test), Q value = 0.012

Table S1765. Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SVIL MUTATED	14	4	4	3	0
SVIL WILD-TYPE	48	55	36	34	59

Figure S789. Get High-res Image Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SVIL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00109 (Fisher's exact test), Q value = 0.019

Table S1766. Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SVIL MUTATED	4	3	18
SVIL WILD-TYPE	102	51	79

Figure S790. Get High-res Image Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00512 (Fisher's exact test), Q value = 0.045

Table S1767. Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SVIL MUTATED	19	4	3
SVIL WILD-TYPE	104	91	68

Figure S791. Get High-res Image Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SVIL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.15

Table S1768. Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SVIL MUTATED	20	4	2
SVIL WILD-TYPE	137	59	67

Figure S792. Get High-res Image Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.36

Table S1769. Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SVIL MUTATED	2	4	7	5	0	2
SVIL WILD-TYPE	31	15	52	34	16	43

'SVIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0852 (Fisher's exact test), Q value = 0.21

Table S1770. Gene #177: 'SVIL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SVIL MUTATED	8	2	5	3	2	0
SVIL WILD-TYPE	39	37	30	29	21	35

'WNK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.079

Table S1771. Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WNK4 MUTATED	1	16	2	1	1
WNK4 WILD-TYPE	78	110	25	42	11

Figure S793. Get High-res Image Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WNK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.1

Table S1772. Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WNK4 MUTATED	2	11	1	2
WNK4 WILD-TYPE	69	65	33	61

Figure S794. Get High-res Image Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WNK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.13

Table S1773. Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WNK4 MUTATED	2	6	5	0	5
WNK4 WILD-TYPE	14	56	46	65	50

Figure S795. Get High-res Image Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WNK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.083

Table S1774. Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WNK4 MUTATED	5	8	4	1
WNK4 WILD-TYPE	93	36	46	56

Figure S796. Get High-res Image Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WNK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.17

Table S1775. Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WNK4 MUTATED	9	2	3	2	1
WNK4 WILD-TYPE	53	57	37	35	58

'WNK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.36

Table S1776. Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WNK4 MUTATED	5	2	10
WNK4 WILD-TYPE	101	52	87

'WNK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.11

Table S1777. Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WNK4 MUTATED	14	2	5
WNK4 WILD-TYPE	109	93	66

Figure S797. Get High-res Image Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WNK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.29

Table S1778. Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WNK4 MUTATED	16	2	3
WNK4 WILD-TYPE	141	61	66

'WNK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.37

Table S1779. Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WNK4 MUTATED	2	2	4	6	0	1
WNK4 WILD-TYPE	31	17	55	33	16	44

'WNK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.79

Table S1780. Gene #178: 'WNK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WNK4 MUTATED	4	1	4	3	1	2
WNK4 WILD-TYPE	43	38	31	29	22	33

'ACVR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 0.2

Table S1781. Gene #179: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ACVR1B MUTATED	0	8	1	1	1
ACVR1B WILD-TYPE	79	118	26	42	11

'ACVR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.24

Table S1782. Gene #179: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ACVR1B MUTATED	1	6	0	1
ACVR1B WILD-TYPE	70	70	34	62

'ACVR1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.65

Table S1783. Gene #179: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ACVR1B MUTATED	0	3	3	1	4
ACVR1B WILD-TYPE	16	59	48	64	51

'ACVR1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0193 (Fisher's exact test), Q value = 0.093

Table S1784. Gene #179: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ACVR1B MUTATED	2	6	2	1
ACVR1B WILD-TYPE	96	38	48	56

Figure S798. Get High-res Image Gene #179: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0055

Table S1785. Gene #179: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ACVR1B MUTATED	2	0	0	6	0
ACVR1B WILD-TYPE	60	59	40	31	59

Figure S799. Get High-res Image Gene #179: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0773 (Fisher's exact test), Q value = 0.2

Table S1786. Gene #179: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ACVR1B MUTATED	2	0	6
ACVR1B WILD-TYPE	104	54	91

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.1

Table S1787. Gene #179: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ACVR1B MUTATED	9	2	0
ACVR1B WILD-TYPE	114	93	71

Figure S800. Get High-res Image Gene #179: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 0.14

Table S1788. Gene #179: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ACVR1B MUTATED	10	1	0
ACVR1B WILD-TYPE	147	62	69

Figure S801. Get High-res Image Gene #179: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.48

Table S1789. Gene #179: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ACVR1B MUTATED	1	2	3	2	0	0
ACVR1B WILD-TYPE	32	17	56	37	16	45

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.5

Table S1790. Gene #179: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ACVR1B MUTATED	3	0	2	2	1	0
ACVR1B WILD-TYPE	44	39	33	30	22	35

'C5ORF42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S1791. Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C5ORF42 MUTATED	3	17	2	3	1
C5ORF42 WILD-TYPE	76	109	25	40	11

'C5ORF42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.008

Table S1792. Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C5ORF42 MUTATED	3	16	4	1
C5ORF42 WILD-TYPE	68	60	30	62

Figure S802. Get High-res Image Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C5ORF42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00862 (Fisher's exact test), Q value = 0.062

Table S1793. Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C5ORF42 MUTATED	0	11	6	1	3
C5ORF42 WILD-TYPE	16	51	45	64	52

Figure S803. Get High-res Image Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C5ORF42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S1794. Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C5ORF42 MUTATED	0	14	6	1
C5ORF42 WILD-TYPE	98	30	44	56

Figure S804. Get High-res Image Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0057

Table S1795. Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C5ORF42 MUTATED	14	1	1	6	2
C5ORF42 WILD-TYPE	48	58	39	31	57

Figure S805. Get High-res Image Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C5ORF42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00064 (Fisher's exact test), Q value = 0.014

Table S1796. Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C5ORF42 MUTATED	4	2	18
C5ORF42 WILD-TYPE	102	52	79

Figure S806. Get High-res Image Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.12

Table S1797. Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C5ORF42 MUTATED	18	4	5
C5ORF42 WILD-TYPE	105	91	66

Figure S807. Get High-res Image Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00957 (Fisher's exact test), Q value = 0.065

Table S1798. Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C5ORF42 MUTATED	22	3	2
C5ORF42 WILD-TYPE	135	60	67

Figure S808. Get High-res Image Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.46

Table S1799. Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C5ORF42 MUTATED	4	4	4	5	1	2
C5ORF42 WILD-TYPE	29	15	55	34	15	43

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.29

Table S1800. Gene #180: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C5ORF42 MUTATED	9	2	2	3	3	1
C5ORF42 WILD-TYPE	38	37	33	29	20	34

'ITGA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.28

Table S1801. Gene #181: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ITGA6 MUTATED	0	4	2	0	0
ITGA6 WILD-TYPE	79	122	25	43	12

'ITGA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.65

Table S1802. Gene #181: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ITGA6 MUTATED	0	2	1	1
ITGA6 WILD-TYPE	71	74	33	62

'ITGA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.27

Table S1803. Gene #181: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ITGA6 MUTATED	0	3	0	0	3
ITGA6 WILD-TYPE	16	59	51	65	52

'ITGA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00234 (Fisher's exact test), Q value = 0.03

Table S1804. Gene #181: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ITGA6 MUTATED	0	4	2	0
ITGA6 WILD-TYPE	98	40	48	57

Figure S809. Get High-res Image Gene #181: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ITGA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 0.11

Table S1805. Gene #181: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ITGA6 MUTATED	4	0	0	2	0
ITGA6 WILD-TYPE	58	59	40	35	59

Figure S810. Get High-res Image Gene #181: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ITGA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.41

Table S1806. Gene #181: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ITGA6 MUTATED	2	0	4
ITGA6 WILD-TYPE	104	54	93

'ITGA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S1807. Gene #181: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ITGA6 MUTATED	4	0	2
ITGA6 WILD-TYPE	119	95	69

'ITGA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.49

Table S1808. Gene #181: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ITGA6 MUTATED	5	1	0
ITGA6 WILD-TYPE	152	62	69

'ITGA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.7

Table S1809. Gene #181: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ITGA6 MUTATED	0	1	1	1	0	0
ITGA6 WILD-TYPE	33	18	58	38	16	45

'ITGA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.71

Table S1810. Gene #181: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ITGA6 MUTATED	2	0	1	0	0	0
ITGA6 WILD-TYPE	45	39	34	32	23	35

'CDC25C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0975 (Fisher's exact test), Q value = 0.23

Table S1811. Gene #182: 'CDC25C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDC25C MUTATED	0	9	1	2	0
CDC25C WILD-TYPE	79	117	26	41	12

'CDC25C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.3

Table S1812. Gene #182: 'CDC25C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDC25C MUTATED	1	6	2	1
CDC25C WILD-TYPE	70	70	32	62

'CDC25C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.36

Table S1813. Gene #182: 'CDC25C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CDC25C MUTATED	0	4	3	0	3
CDC25C WILD-TYPE	16	58	48	65	52

'CDC25C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.085

Table S1814. Gene #182: 'CDC25C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CDC25C MUTATED	2	5	3	0
CDC25C WILD-TYPE	96	39	47	57

Figure S811. Get High-res Image Gene #182: 'CDC25C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDC25C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S1815. Gene #182: 'CDC25C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CDC25C MUTATED	4	1	0	3	1
CDC25C WILD-TYPE	58	58	40	34	58

'CDC25C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0479 (Fisher's exact test), Q value = 0.15

Table S1816. Gene #182: 'CDC25C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CDC25C MUTATED	1	1	7
CDC25C WILD-TYPE	105	53	90

Figure S812. Get High-res Image Gene #182: 'CDC25C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDC25C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.37

Table S1817. Gene #182: 'CDC25C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CDC25C MUTATED	8	3	1
CDC25C WILD-TYPE	115	92	70

'CDC25C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.52

Table S1818. Gene #182: 'CDC25C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CDC25C MUTATED	9	2	1
CDC25C WILD-TYPE	148	61	68

'CDC25C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.57

Table S1819. Gene #182: 'CDC25C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CDC25C MUTATED	1	2	1	1	0	3
CDC25C WILD-TYPE	32	17	58	38	16	42

'CDC25C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 0.93

Table S1820. Gene #182: 'CDC25C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CDC25C MUTATED	2	1	1	1	2	1
CDC25C WILD-TYPE	45	38	34	31	21	34

'FKBP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.24

Table S1821. Gene #183: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FKBP9 MUTATED	0	5	0	0	1
FKBP9 WILD-TYPE	79	121	27	43	11

'FKBP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0608 (Fisher's exact test), Q value = 0.18

Table S1822. Gene #183: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FKBP9 MUTATED	0	4	1	0
FKBP9 WILD-TYPE	71	72	33	63

'FKBP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.57

Table S1823. Gene #183: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FKBP9 MUTATED	0	3	1	0	1
FKBP9 WILD-TYPE	16	59	50	65	54

'FKBP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.26

Table S1824. Gene #183: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FKBP9 MUTATED	1	1	3	0
FKBP9 WILD-TYPE	97	43	47	57

'FKBP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S1825. Gene #183: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FKBP9 MUTATED	4	1	0	1	0
FKBP9 WILD-TYPE	58	58	40	36	59

'FKBP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 0.92

Table S1826. Gene #183: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FKBP9 MUTATED	2	1	3
FKBP9 WILD-TYPE	104	53	94

'FKBP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1827. Gene #183: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FKBP9 MUTATED	3	2	1
FKBP9 WILD-TYPE	120	93	70

'FKBP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.5

Table S1828. Gene #183: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FKBP9 MUTATED	5	1	0
FKBP9 WILD-TYPE	152	62	69

'FKBP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.68

Table S1829. Gene #183: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FKBP9 MUTATED	0	0	2	2	0	0
FKBP9 WILD-TYPE	33	19	57	37	16	45

'FKBP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.31

Table S1830. Gene #183: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FKBP9 MUTATED	0	0	2	1	1	0
FKBP9 WILD-TYPE	47	39	33	31	22	35

'BEND3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.54

Table S1831. Gene #184: 'BEND3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BEND3 MUTATED	2	8	0	1	1
BEND3 WILD-TYPE	77	118	27	42	11

'BEND3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.28

Table S1832. Gene #184: 'BEND3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BEND3 MUTATED	0	5	1	3
BEND3 WILD-TYPE	71	71	33	60

'BEND3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S1833. Gene #184: 'BEND3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BEND3 MUTATED	1	6	0	2	2
BEND3 WILD-TYPE	15	56	51	63	53

'BEND3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.61

Table S1834. Gene #184: 'BEND3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BEND3 MUTATED	3	4	2	2
BEND3 WILD-TYPE	95	40	48	55

'BEND3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00563 (Fisher's exact test), Q value = 0.048

Table S1835. Gene #184: 'BEND3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BEND3 MUTATED	7	1	0	2	0
BEND3 WILD-TYPE	55	58	40	35	59

Figure S813. Get High-res Image Gene #184: 'BEND3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BEND3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S1836. Gene #184: 'BEND3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BEND3 MUTATED	4	0	6
BEND3 WILD-TYPE	102	54	91

'BEND3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.092

Table S1837. Gene #184: 'BEND3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BEND3 MUTATED	10	1	1
BEND3 WILD-TYPE	113	94	70

Figure S814. Get High-res Image Gene #184: 'BEND3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BEND3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0605 (Fisher's exact test), Q value = 0.18

Table S1838. Gene #184: 'BEND3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BEND3 MUTATED	10	2	0
BEND3 WILD-TYPE	147	61	69

'BEND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.49

Table S1839. Gene #184: 'BEND3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BEND3 MUTATED	1	1	5	2	0	0
BEND3 WILD-TYPE	32	18	54	37	16	45

'BEND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0286 (Fisher's exact test), Q value = 0.12

Table S1840. Gene #184: 'BEND3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BEND3 MUTATED	4	0	4	0	1	0
BEND3 WILD-TYPE	43	39	31	32	22	35

Figure S815. Get High-res Image Gene #184: 'BEND3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ABCA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.1

Table S1841. Gene #185: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ABCA6 MUTATED	0	11	0	1	0
ABCA6 WILD-TYPE	79	115	27	42	12

Figure S816. Get High-res Image Gene #185: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00102 (Fisher's exact test), Q value = 0.018

Table S1842. Gene #185: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ABCA6 MUTATED	0	8	1	0
ABCA6 WILD-TYPE	71	68	33	63

Figure S817. Get High-res Image Gene #185: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ABCA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.46

Table S1843. Gene #185: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ABCA6 MUTATED	0	2	3	1	5
ABCA6 WILD-TYPE	16	60	48	64	50

'ABCA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.27

Table S1844. Gene #185: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ABCA6 MUTATED	3	5	2	1
ABCA6 WILD-TYPE	95	39	48	56

'ABCA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.28

Table S1845. Gene #185: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ABCA6 MUTATED	5	3	1	3	0
ABCA6 WILD-TYPE	57	56	39	34	59

'ABCA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.1

Table S1846. Gene #185: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ABCA6 MUTATED	1	3	8
ABCA6 WILD-TYPE	105	51	89

Figure S818. Get High-res Image Gene #185: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.28

Table S1847. Gene #185: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ABCA6 MUTATED	9	3	1
ABCA6 WILD-TYPE	114	92	70

'ABCA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S1848. Gene #185: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ABCA6 MUTATED	10	1	2
ABCA6 WILD-TYPE	147	62	67

'ABCA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 0.84

Table S1849. Gene #185: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ABCA6 MUTATED	2	1	2	3	0	1
ABCA6 WILD-TYPE	31	18	57	36	16	44

'ABCA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.66

Table S1850. Gene #185: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ABCA6 MUTATED	2	1	2	3	1	0
ABCA6 WILD-TYPE	45	38	33	29	22	35

'FOXN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S1851. Gene #186: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FOXN3 MUTATED	0	7	1	0	0
FOXN3 WILD-TYPE	79	119	26	43	12

'FOXN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00121 (Fisher's exact test), Q value = 0.02

Table S1852. Gene #186: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FOXN3 MUTATED	0	7	0	0
FOXN3 WILD-TYPE	71	69	34	63

Figure S819. Get High-res Image Gene #186: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FOXN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.38

Table S1853. Gene #186: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FOXN3 MUTATED	0	4	1	0	2
FOXN3 WILD-TYPE	16	58	50	65	53

'FOXN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.068

Table S1854. Gene #186: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FOXN3 MUTATED	0	4	2	1
FOXN3 WILD-TYPE	98	40	48	56

Figure S820. Get High-res Image Gene #186: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FOXN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.084

Table S1855. Gene #186: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FOXN3 MUTATED	1	2	0	4	0
FOXN3 WILD-TYPE	61	57	40	33	59

Figure S821. Get High-res Image Gene #186: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FOXN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.44

Table S1856. Gene #186: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FOXN3 MUTATED	1	2	4
FOXN3 WILD-TYPE	105	52	93

'FOXN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.37

Table S1857. Gene #186: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FOXN3 MUTATED	6	1	1
FOXN3 WILD-TYPE	117	94	70

'FOXN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.37

Table S1858. Gene #186: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FOXN3 MUTATED	7	0	1
FOXN3 WILD-TYPE	150	63	68

'FOXN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.47

Table S1859. Gene #186: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FOXN3 MUTATED	1	2	2	2	0	0
FOXN3 WILD-TYPE	32	17	57	37	16	45

'FOXN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.51

Table S1860. Gene #186: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FOXN3 MUTATED	3	0	1	2	1	0
FOXN3 WILD-TYPE	44	39	34	30	22	35

'BAX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.3

Table S1861. Gene #187: 'BAX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BAX MUTATED	0	3	1	1	1
BAX WILD-TYPE	79	123	26	42	11

'BAX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.076

Table S1862. Gene #187: 'BAX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BAX MUTATED	0	5	0	0
BAX WILD-TYPE	71	71	34	63

Figure S822. Get High-res Image Gene #187: 'BAX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BAX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S1863. Gene #187: 'BAX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BAX MUTATED	0	3	2	1	0
BAX WILD-TYPE	16	59	49	64	55

'BAX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0303 (Fisher's exact test), Q value = 0.12

Table S1864. Gene #187: 'BAX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BAX MUTATED	0	3	2	1
BAX WILD-TYPE	98	41	48	56

Figure S823. Get High-res Image Gene #187: 'BAX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BAX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S1865. Gene #187: 'BAX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BAX MUTATED	3	0	1	1	0
BAX WILD-TYPE	59	59	39	36	59

'BAX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0742 (Fisher's exact test), Q value = 0.2

Table S1866. Gene #187: 'BAX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BAX MUTATED	0	1	4
BAX WILD-TYPE	106	53	93

'BAX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1867. Gene #187: 'BAX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BAX MUTATED	3	2	1
BAX WILD-TYPE	120	93	70

'BAX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.49

Table S1868. Gene #187: 'BAX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BAX MUTATED	5	1	0
BAX WILD-TYPE	152	62	69

'BAX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.57

Table S1869. Gene #187: 'BAX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BAX MUTATED	0	0	0	2	0	1
BAX WILD-TYPE	33	19	59	37	16	44

'BAX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0561 (Fisher's exact test), Q value = 0.17

Table S1870. Gene #187: 'BAX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BAX MUTATED	1	0	0	0	2	0
BAX WILD-TYPE	46	39	35	32	21	35

'IGFBP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.66

Table S1871. Gene #188: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IGFBP7 MUTATED	0	3	0	0	0
IGFBP7 WILD-TYPE	79	123	27	43	12

'IGFBP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.29

Table S1872. Gene #188: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IGFBP7 MUTATED	0	3	0	0
IGFBP7 WILD-TYPE	71	73	34	63

'IGFBP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.18

Table S1873. Gene #188: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IGFBP7 MUTATED	3	0	0	0	0
IGFBP7 WILD-TYPE	59	59	40	37	59

'IGFBP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S1874. Gene #188: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IGFBP7 MUTATED	0	0	3
IGFBP7 WILD-TYPE	106	54	94

'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0889 (Fisher's exact test), Q value = 0.22

Table S1875. Gene #188: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IGFBP7 MUTATED	4	0	0
IGFBP7 WILD-TYPE	119	95	71

'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.56

Table S1876. Gene #188: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IGFBP7 MUTATED	4	0	0
IGFBP7 WILD-TYPE	153	63	69

'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 0.88

Table S1877. Gene #188: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IGFBP7 MUTATED	1	0	1	1	0	0
IGFBP7 WILD-TYPE	32	19	58	38	16	45

'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.71

Table S1878. Gene #188: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IGFBP7 MUTATED	2	0	1	0	0	0
IGFBP7 WILD-TYPE	45	39	34	32	23	35

'FAM113B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.1

Table S1879. Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM113B MUTATED	0	11	0	1	0
FAM113B WILD-TYPE	79	115	27	42	12

Figure S824. Get High-res Image Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM113B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00748 (Fisher's exact test), Q value = 0.056

Table S1880. Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM113B MUTATED	0	8	0	3
FAM113B WILD-TYPE	71	68	34	60

Figure S825. Get High-res Image Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM113B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.35

Table S1881. Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FAM113B MUTATED	1	6	1	1	2
FAM113B WILD-TYPE	15	56	50	64	53

'FAM113B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.078

Table S1882. Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FAM113B MUTATED	1	4	5	1
FAM113B WILD-TYPE	97	40	45	56

Figure S826. Get High-res Image Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM113B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00169 (Fisher's exact test), Q value = 0.025

Table S1883. Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FAM113B MUTATED	8	1	0	3	0
FAM113B WILD-TYPE	54	58	40	34	59

Figure S827. Get High-res Image Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM113B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.46

Table S1884. Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FAM113B MUTATED	4	1	7
FAM113B WILD-TYPE	102	53	90

'FAM113B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00415 (Fisher's exact test), Q value = 0.04

Table S1885. Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FAM113B MUTATED	11	2	0
FAM113B WILD-TYPE	112	93	71

Figure S828. Get High-res Image Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM113B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.25

Table S1886. Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FAM113B MUTATED	11	1	1
FAM113B WILD-TYPE	146	62	68

'FAM113B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.38

Table S1887. Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FAM113B MUTATED	2	0	4	4	1	0
FAM113B WILD-TYPE	31	19	55	35	15	45

'FAM113B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.56

Table S1888. Gene #189: 'FAM113B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FAM113B MUTATED	3	0	3	2	2	1
FAM113B WILD-TYPE	44	39	32	30	21	34

'TP53BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.13

Table S1889. Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TP53BP1 MUTATED	0	11	1	3	1
TP53BP1 WILD-TYPE	79	115	26	40	11

Figure S829. Get High-res Image Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 0.15

Table S1890. Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TP53BP1 MUTATED	0	6	1	5
TP53BP1 WILD-TYPE	71	70	33	58

Figure S830. Get High-res Image Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.6

Table S1891. Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TP53BP1 MUTATED	1	6	1	3	3
TP53BP1 WILD-TYPE	15	56	50	62	52

'TP53BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.33

Table S1892. Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TP53BP1 MUTATED	3	5	4	2
TP53BP1 WILD-TYPE	95	39	46	55

'TP53BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029

Table S1893. Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TP53BP1 MUTATED	11	1	0	3	0
TP53BP1 WILD-TYPE	51	58	40	34	59

Figure S831. Get High-res Image Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TP53BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.44

Table S1894. Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TP53BP1 MUTATED	6	1	8
TP53BP1 WILD-TYPE	100	53	89

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00688 (Fisher's exact test), Q value = 0.054

Table S1895. Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TP53BP1 MUTATED	13	2	1
TP53BP1 WILD-TYPE	110	93	70

Figure S832. Get High-res Image Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 0.098

Table S1896. Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TP53BP1 MUTATED	13	3	0
TP53BP1 WILD-TYPE	144	60	69

Figure S833. Get High-res Image Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.43

Table S1897. Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TP53BP1 MUTATED	1	2	5	0	0	2
TP53BP1 WILD-TYPE	32	17	54	39	16	43

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.47

Table S1898. Gene #190: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TP53BP1 MUTATED	3	1	4	1	1	0
TP53BP1 WILD-TYPE	44	38	31	31	22	35

'C1R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.48

Table S1899. Gene #191: 'C1R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C1R MUTATED	0	4	1	0	0
C1R WILD-TYPE	79	122	26	43	12

'C1R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.27

Table S1900. Gene #191: 'C1R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C1R MUTATED	0	1	2	1
C1R WILD-TYPE	71	75	32	62

'C1R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.57

Table S1901. Gene #191: 'C1R MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C1R MUTATED	0	3	1	0	1
C1R WILD-TYPE	16	59	50	65	54

'C1R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.066

Table S1902. Gene #191: 'C1R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C1R MUTATED	0	3	2	0
C1R WILD-TYPE	98	41	48	57

Figure S834. Get High-res Image Gene #191: 'C1R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C1R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 0.18

Table S1903. Gene #191: 'C1R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C1R MUTATED	3	0	0	0	0
C1R WILD-TYPE	59	59	40	37	59

'C1R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.71

Table S1904. Gene #191: 'C1R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C1R MUTATED	1	0	2
C1R WILD-TYPE	105	54	95

'C1R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.46

Table S1905. Gene #191: 'C1R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C1R MUTATED	4	1	0
C1R WILD-TYPE	119	94	71

'C1R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.47

Table S1906. Gene #191: 'C1R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C1R MUTATED	3	2	0
C1R WILD-TYPE	154	61	69

'C1R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 0.97

Table S1907. Gene #191: 'C1R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C1R MUTATED	1	0	1	0	0	1
C1R WILD-TYPE	32	19	58	39	16	44

'C1R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1908. Gene #191: 'C1R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C1R MUTATED	1	1	1	0	0	0
C1R WILD-TYPE	46	38	34	32	23	35

'WDR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.0079

Table S1909. Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WDR7 MUTATED	0	16	0	0	0
WDR7 WILD-TYPE	79	110	27	43	12

Figure S835. Get High-res Image Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WDR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.085

Table S1910. Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WDR7 MUTATED	1	10	1	2
WDR7 WILD-TYPE	70	66	33	61

Figure S836. Get High-res Image Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WDR7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00364 (Fisher's exact test), Q value = 0.037

Table S1911. Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WDR7 MUTATED	1	8	6	1	0
WDR7 WILD-TYPE	15	54	45	64	55

Figure S837. Get High-res Image Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WDR7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00188 (Fisher's exact test), Q value = 0.027

Table S1912. Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WDR7 MUTATED	2	7	6	1
WDR7 WILD-TYPE	96	37	44	56

Figure S838. Get High-res Image Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WDR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.099

Table S1913. Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WDR7 MUTATED	6	2	2	5	0
WDR7 WILD-TYPE	56	57	38	32	59

Figure S839. Get High-res Image Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WDR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.11

Table S1914. Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WDR7 MUTATED	2	3	10
WDR7 WILD-TYPE	104	51	87

Figure S840. Get High-res Image Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00407 (Fisher's exact test), Q value = 0.04

Table S1915. Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WDR7 MUTATED	13	4	0
WDR7 WILD-TYPE	110	91	71

Figure S841. Get High-res Image Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0274 (Fisher's exact test), Q value = 0.11

Table S1916. Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WDR7 MUTATED	13	4	0
WDR7 WILD-TYPE	144	59	69

Figure S842. Get High-res Image Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.28

Table S1917. Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WDR7 MUTATED	2	3	7	1	0	1
WDR7 WILD-TYPE	31	16	52	38	16	44

'WDR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0402 (Fisher's exact test), Q value = 0.14

Table S1918. Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WDR7 MUTATED	5	1	6	1	1	0
WDR7 WILD-TYPE	42	38	29	31	22	35

Figure S843. Get High-res Image Gene #192: 'WDR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ERBB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.1

Table S1919. Gene #193: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ERBB3 MUTATED	3	21	1	4	2
ERBB3 WILD-TYPE	76	105	26	39	10

Figure S844. Get High-res Image Gene #193: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ERBB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 0.21

Table S1920. Gene #193: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ERBB3 MUTATED	3	11	5	4
ERBB3 WILD-TYPE	68	65	29	59

'ERBB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 0.18

Table S1921. Gene #193: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ERBB3 MUTATED	2	8	4	2	10
ERBB3 WILD-TYPE	14	54	47	63	45

'ERBB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.075

Table S1922. Gene #193: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ERBB3 MUTATED	6	11	5	4
ERBB3 WILD-TYPE	92	33	45	53

Figure S845. Get High-res Image Gene #193: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.63

Table S1923. Gene #193: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ERBB3 MUTATED	10	7	3	3	4
ERBB3 WILD-TYPE	52	52	37	34	55

'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.48

Table S1924. Gene #193: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ERBB3 MUTATED	11	3	13
ERBB3 WILD-TYPE	95	51	84

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0853 (Fisher's exact test), Q value = 0.21

Table S1925. Gene #193: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ERBB3 MUTATED	19	6	6
ERBB3 WILD-TYPE	104	89	65

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.66

Table S1926. Gene #193: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ERBB3 MUTATED	20	5	6
ERBB3 WILD-TYPE	137	58	63

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S1927. Gene #193: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ERBB3 MUTATED	1	3	6	7	2	2
ERBB3 WILD-TYPE	32	16	53	32	14	43

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.4

Table S1928. Gene #193: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ERBB3 MUTATED	4	1	4	4	5	3
ERBB3 WILD-TYPE	43	38	31	28	18	32

'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00335 (Fisher's exact test), Q value = 0.036

Table S1929. Gene #194: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CASP8 MUTATED	1	16	1	0	0
CASP8 WILD-TYPE	78	110	26	43	12

Figure S846. Get High-res Image Gene #194: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.2

Table S1930. Gene #194: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CASP8 MUTATED	1	8	2	2
CASP8 WILD-TYPE	70	68	32	61

'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.45

Table S1931. Gene #194: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CASP8 MUTATED	0	3	5	2	6
CASP8 WILD-TYPE	16	59	46	63	49

'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0755 (Fisher's exact test), Q value = 0.2

Table S1932. Gene #194: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CASP8 MUTATED	4	7	2	3
CASP8 WILD-TYPE	94	37	48	54

'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.31

Table S1933. Gene #194: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CASP8 MUTATED	8	3	3	3	1
CASP8 WILD-TYPE	54	56	37	34	58

'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.23

Table S1934. Gene #194: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CASP8 MUTATED	4	3	11
CASP8 WILD-TYPE	102	51	86

'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.27

Table S1935. Gene #194: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CASP8 MUTATED	12	3	3
CASP8 WILD-TYPE	111	92	68

'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.51

Table S1936. Gene #194: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CASP8 MUTATED	13	2	3
CASP8 WILD-TYPE	144	61	66

'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.17

Table S1937. Gene #194: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CASP8 MUTATED	0	4	4	2	1	1
CASP8 WILD-TYPE	33	15	55	37	15	44

'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 0.86

Table S1938. Gene #194: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CASP8 MUTATED	4	1	3	2	1	1
CASP8 WILD-TYPE	43	38	32	30	22	34

'PRKAB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 0.87

Table S1939. Gene #195: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRKAB1 MUTATED	2	2	1	1	0
PRKAB1 WILD-TYPE	77	124	26	42	12

'PRKAB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.69

Table S1940. Gene #195: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRKAB1 MUTATED	2	1	1	0
PRKAB1 WILD-TYPE	69	75	33	63

'PRKAB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.76

Table S1941. Gene #195: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PRKAB1 MUTATED	0	1	3	1	1
PRKAB1 WILD-TYPE	16	61	48	64	54

'PRKAB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.61

Table S1942. Gene #195: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PRKAB1 MUTATED	1	2	1	2
PRKAB1 WILD-TYPE	97	42	49	55

'PRKAB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 0.97

Table S1943. Gene #195: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PRKAB1 MUTATED	1	1	1	0	2
PRKAB1 WILD-TYPE	61	58	39	37	57

'PRKAB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 0.8

Table S1944. Gene #195: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PRKAB1 MUTATED	3	0	2
PRKAB1 WILD-TYPE	103	54	95

'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 0.84

Table S1945. Gene #195: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PRKAB1 MUTATED	2	3	1
PRKAB1 WILD-TYPE	121	92	70

'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 0.91

Table S1946. Gene #195: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PRKAB1 MUTATED	3	1	2
PRKAB1 WILD-TYPE	154	62	67

'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.69

Table S1947. Gene #195: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PRKAB1 MUTATED	1	0	0	1	0	2
PRKAB1 WILD-TYPE	32	19	59	38	16	43

'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.36

Table S1948. Gene #195: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PRKAB1 MUTATED	0	1	0	0	1	2
PRKAB1 WILD-TYPE	47	38	35	32	22	33

'PIGB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.28

Table S1949. Gene #196: 'PIGB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIGB MUTATED	0	8	1	1	0
PIGB WILD-TYPE	79	118	26	42	12

'PIGB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 0.15

Table S1950. Gene #196: 'PIGB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIGB MUTATED	0	3	3	1
PIGB WILD-TYPE	71	73	31	62

Figure S847. Get High-res Image Gene #196: 'PIGB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIGB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.3

Table S1951. Gene #196: 'PIGB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PIGB MUTATED	1	4	2	0	1
PIGB WILD-TYPE	15	58	49	65	54

'PIGB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.074

Table S1952. Gene #196: 'PIGB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PIGB MUTATED	2	5	1	0
PIGB WILD-TYPE	96	39	49	57

Figure S848. Get High-res Image Gene #196: 'PIGB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PIGB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.1

Table S1953. Gene #196: 'PIGB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PIGB MUTATED	6	1	2	0	0
PIGB WILD-TYPE	56	58	38	37	59

Figure S849. Get High-res Image Gene #196: 'PIGB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIGB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.45

Table S1954. Gene #196: 'PIGB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PIGB MUTATED	4	0	5
PIGB WILD-TYPE	102	54	92

'PIGB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00989 (Fisher's exact test), Q value = 0.066

Table S1955. Gene #196: 'PIGB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PIGB MUTATED	9	1	0
PIGB WILD-TYPE	114	94	71

Figure S850. Get High-res Image Gene #196: 'PIGB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PIGB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0587 (Fisher's exact test), Q value = 0.17

Table S1956. Gene #196: 'PIGB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PIGB MUTATED	9	1	0
PIGB WILD-TYPE	148	62	69

'PIGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.68

Table S1957. Gene #196: 'PIGB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PIGB MUTATED	0	0	2	3	0	1
PIGB WILD-TYPE	33	19	57	36	16	44

'PIGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.7

Table S1958. Gene #196: 'PIGB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PIGB MUTATED	1	1	2	2	0	0
PIGB WILD-TYPE	46	38	33	30	23	35

'NAA25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.72

Table S1959. Gene #197: 'NAA25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NAA25 MUTATED	3	8	0	2	1
NAA25 WILD-TYPE	76	118	27	41	11

'NAA25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.086

Table S1960. Gene #197: 'NAA25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NAA25 MUTATED	3	9	2	0
NAA25 WILD-TYPE	68	67	32	63

Figure S851. Get High-res Image Gene #197: 'NAA25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NAA25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.3

Table S1961. Gene #197: 'NAA25 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NAA25 MUTATED	0	6	5	1	2
NAA25 WILD-TYPE	16	56	46	64	53

'NAA25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.27

Table S1962. Gene #197: 'NAA25 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NAA25 MUTATED	4	3	6	1
NAA25 WILD-TYPE	94	41	44	56

'NAA25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 0.99

Table S1963. Gene #197: 'NAA25 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NAA25 MUTATED	4	3	1	2	3
NAA25 WILD-TYPE	58	56	39	35	56

'NAA25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1964. Gene #197: 'NAA25 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NAA25 MUTATED	5	3	5
NAA25 WILD-TYPE	101	51	92

'NAA25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1965. Gene #197: 'NAA25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NAA25 MUTATED	6	5	3
NAA25 WILD-TYPE	117	90	68

'NAA25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 0.79

Table S1966. Gene #197: 'NAA25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NAA25 MUTATED	9	3	2
NAA25 WILD-TYPE	148	60	67

'NAA25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S1967. Gene #197: 'NAA25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NAA25 MUTATED	1	1	4	2	0	3
NAA25 WILD-TYPE	32	18	55	37	16	42

'NAA25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.4

Table S1968. Gene #197: 'NAA25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NAA25 MUTATED	2	1	2	1	4	1
NAA25 WILD-TYPE	45	38	33	31	19	34

'HNF1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.37

Table S1969. Gene #198: 'HNF1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HNF1B MUTATED	0	5	1	0	0
HNF1B WILD-TYPE	79	121	26	43	12

'HNF1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.069

Table S1970. Gene #198: 'HNF1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HNF1B MUTATED	0	2	3	0
HNF1B WILD-TYPE	71	74	31	63

Figure S852. Get High-res Image Gene #198: 'HNF1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HNF1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.56

Table S1971. Gene #198: 'HNF1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HNF1B MUTATED	0	1	0	1	3
HNF1B WILD-TYPE	16	61	51	64	52

'HNF1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00301 (Fisher's exact test), Q value = 0.034

Table S1972. Gene #198: 'HNF1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HNF1B MUTATED	0	4	0	1
HNF1B WILD-TYPE	98	40	50	56

Figure S853. Get High-res Image Gene #198: 'HNF1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HNF1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.13

Table S1973. Gene #198: 'HNF1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HNF1B MUTATED	4	0	0	1	0
HNF1B WILD-TYPE	58	59	40	36	59

Figure S854. Get High-res Image Gene #198: 'HNF1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HNF1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.65

Table S1974. Gene #198: 'HNF1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HNF1B MUTATED	2	0	3
HNF1B WILD-TYPE	104	54	94

'HNF1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 0.23

Table S1975. Gene #198: 'HNF1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HNF1B MUTATED	5	0	1
HNF1B WILD-TYPE	118	95	70

'HNF1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S1976. Gene #198: 'HNF1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HNF1B MUTATED	6	0	0
HNF1B WILD-TYPE	151	63	69

'HNF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.56

Table S1977. Gene #198: 'HNF1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HNF1B MUTATED	1	1	1	1	1	0
HNF1B WILD-TYPE	32	18	58	38	15	45

'HNF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 0.74

Table S1978. Gene #198: 'HNF1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HNF1B MUTATED	2	0	1	1	1	0
HNF1B WILD-TYPE	45	39	34	31	22	35

'GLIPR1L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.41

Table S1979. Gene #199: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GLIPR1L2 MUTATED	1	6	2	0	0
GLIPR1L2 WILD-TYPE	78	120	25	43	12

'GLIPR1L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.52

Table S1980. Gene #199: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GLIPR1L2 MUTATED	1	4	2	1
GLIPR1L2 WILD-TYPE	70	72	32	62

'GLIPR1L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.72

Table S1981. Gene #199: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GLIPR1L2 MUTATED	0	2	3	1	3
GLIPR1L2 WILD-TYPE	16	60	48	64	52

'GLIPR1L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.41

Table S1982. Gene #199: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GLIPR1L2 MUTATED	3	4	1	1
GLIPR1L2 WILD-TYPE	95	40	49	56

'GLIPR1L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.1

Table S1983. Gene #199: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GLIPR1L2 MUTATED	5	0	1	2	0
GLIPR1L2 WILD-TYPE	57	59	39	35	59

Figure S855. Get High-res Image Gene #199: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GLIPR1L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.41

Table S1984. Gene #199: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GLIPR1L2 MUTATED	3	0	5
GLIPR1L2 WILD-TYPE	103	54	92

'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.42

Table S1985. Gene #199: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GLIPR1L2 MUTATED	7	2	1
GLIPR1L2 WILD-TYPE	116	93	70

'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.49

Table S1986. Gene #199: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GLIPR1L2 MUTATED	8	1	1
GLIPR1L2 WILD-TYPE	149	62	68

'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 0.84

Table S1987. Gene #199: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GLIPR1L2 MUTATED	2	0	4	1	0	1
GLIPR1L2 WILD-TYPE	31	19	55	38	16	44

'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.28

Table S1988. Gene #199: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GLIPR1L2 MUTATED	4	1	3	0	0	0
GLIPR1L2 WILD-TYPE	43	38	32	32	23	35

'CR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00463 (Fisher's exact test), Q value = 0.043

Table S1989. Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CR1 MUTATED	2	19	1	1	2
CR1 WILD-TYPE	77	107	26	42	10

Figure S856. Get High-res Image Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0555 (Fisher's exact test), Q value = 0.17

Table S1990. Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CR1 MUTATED	2	9	5	3
CR1 WILD-TYPE	69	67	29	60

'CR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0423 (Fisher's exact test), Q value = 0.15

Table S1991. Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CR1 MUTATED	1	10	4	1	6
CR1 WILD-TYPE	15	52	47	64	49

Figure S857. Get High-res Image Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.069

Table S1992. Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CR1 MUTATED	5	9	6	2
CR1 WILD-TYPE	93	35	44	55

Figure S858. Get High-res Image Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S1993. Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CR1 MUTATED	15	1	3	5	0
CR1 WILD-TYPE	47	58	37	32	59

Figure S859. Get High-res Image Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0057

Table S1994. Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CR1 MUTATED	3	2	19
CR1 WILD-TYPE	103	52	78

Figure S860. Get High-res Image Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S1995. Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CR1 MUTATED	22	3	0
CR1 WILD-TYPE	101	92	71

Figure S861. Get High-res Image Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0011 (Fisher's exact test), Q value = 0.019

Table S1996. Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CR1 MUTATED	22	2	1
CR1 WILD-TYPE	135	61	68

Figure S862. Get High-res Image Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.14

Table S1997. Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CR1 MUTATED	0	2	7	6	0	1
CR1 WILD-TYPE	33	17	52	33	16	44

Figure S863. Get High-res Image Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0905 (Fisher's exact test), Q value = 0.22

Table S1998. Gene #200: 'CR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CR1 MUTATED	4	1	4	3	4	0
CR1 WILD-TYPE	43	38	31	29	19	35

'TENC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.5

Table S1999. Gene #201: 'TENC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TENC1 MUTATED	1	7	1	1	1
TENC1 WILD-TYPE	78	119	26	42	11

'TENC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 0.84

Table S2000. Gene #201: 'TENC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TENC1 MUTATED	2	4	2	2
TENC1 WILD-TYPE	69	72	32	61

'TENC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.68

Table S2001. Gene #201: 'TENC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TENC1 MUTATED	1	4	2	1	2
TENC1 WILD-TYPE	15	58	49	64	53

'TENC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S2002. Gene #201: 'TENC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TENC1 MUTATED	2	3	4	1
TENC1 WILD-TYPE	96	41	46	56

'TENC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 0.83

Table S2003. Gene #201: 'TENC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TENC1 MUTATED	4	3	1	1	1
TENC1 WILD-TYPE	58	56	39	36	58

'TENC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2004. Gene #201: 'TENC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TENC1 MUTATED	4	2	4
TENC1 WILD-TYPE	102	52	93

'TENC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.34

Table S2005. Gene #201: 'TENC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TENC1 MUTATED	7	1	3
TENC1 WILD-TYPE	116	94	68

'TENC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.35

Table S2006. Gene #201: 'TENC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TENC1 MUTATED	8	0	3
TENC1 WILD-TYPE	149	63	66

'TENC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.14

Table S2007. Gene #201: 'TENC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TENC1 MUTATED	0	3	4	0	0	1
TENC1 WILD-TYPE	33	16	55	39	16	44

Figure S864. Get High-res Image Gene #201: 'TENC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TENC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.56

Table S2008. Gene #201: 'TENC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TENC1 MUTATED	3	1	3	1	0	0
TENC1 WILD-TYPE	44	38	32	31	23	35

'ZIM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.67

Table S2009. Gene #202: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZIM3 MUTATED	1	7	1	1	0
ZIM3 WILD-TYPE	78	119	26	42	12

'ZIM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.69

Table S2010. Gene #202: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZIM3 MUTATED	1	2	0	3
ZIM3 WILD-TYPE	70	74	34	60

'ZIM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.28

Table S2011. Gene #202: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZIM3 MUTATED	1	5	1	2	0
ZIM3 WILD-TYPE	15	57	50	63	55

'ZIM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.64

Table S2012. Gene #202: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZIM3 MUTATED	2	3	2	2
ZIM3 WILD-TYPE	96	41	48	55

'ZIM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 0.95

Table S2013. Gene #202: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZIM3 MUTATED	3	3	1	1	1
ZIM3 WILD-TYPE	59	56	39	36	58

'ZIM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.67

Table S2014. Gene #202: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZIM3 MUTATED	3	1	5
ZIM3 WILD-TYPE	103	53	92

'ZIM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.42

Table S2015. Gene #202: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZIM3 MUTATED	7	2	1
ZIM3 WILD-TYPE	116	93	70

'ZIM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.77

Table S2016. Gene #202: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZIM3 MUTATED	7	1	2
ZIM3 WILD-TYPE	150	62	67

'ZIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.34

Table S2017. Gene #202: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZIM3 MUTATED	1	0	4	0	1	0
ZIM3 WILD-TYPE	32	19	55	39	15	45

'ZIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.4

Table S2018. Gene #202: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZIM3 MUTATED	1	0	3	0	1	1
ZIM3 WILD-TYPE	46	39	32	32	22	34

'RABGAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00133 (Fisher's exact test), Q value = 0.021

Table S2019. Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RABGAP1 MUTATED	0	15	1	1	2
RABGAP1 WILD-TYPE	79	111	26	42	10

Figure S865. Get High-res Image Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RABGAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S2020. Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RABGAP1 MUTATED	0	15	2	0
RABGAP1 WILD-TYPE	71	61	32	63

Figure S866. Get High-res Image Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RABGAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0089 (Fisher's exact test), Q value = 0.062

Table S2021. Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RABGAP1 MUTATED	0	9	4	0	3
RABGAP1 WILD-TYPE	16	53	47	65	52

Figure S867. Get High-res Image Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RABGAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0061

Table S2022. Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RABGAP1 MUTATED	3	9	4	0
RABGAP1 WILD-TYPE	95	35	46	57

Figure S868. Get High-res Image Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RABGAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S2023. Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RABGAP1 MUTATED	12	0	0	3	0
RABGAP1 WILD-TYPE	50	59	40	34	59

Figure S869. Get High-res Image Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RABGAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S2024. Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RABGAP1 MUTATED	0	1	14
RABGAP1 WILD-TYPE	106	53	83

Figure S870. Get High-res Image Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0055

Table S2025. Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RABGAP1 MUTATED	17	3	0
RABGAP1 WILD-TYPE	106	92	71

Figure S871. Get High-res Image Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00147 (Fisher's exact test), Q value = 0.023

Table S2026. Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RABGAP1 MUTATED	18	2	0
RABGAP1 WILD-TYPE	139	61	69

Figure S872. Get High-res Image Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.35

Table S2027. Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RABGAP1 MUTATED	5	1	4	5	0	1
RABGAP1 WILD-TYPE	28	18	55	34	16	44

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0583 (Fisher's exact test), Q value = 0.17

Table S2028. Gene #203: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RABGAP1 MUTATED	8	1	3	2	2	0
RABGAP1 WILD-TYPE	39	38	32	30	21	35

'ALPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0084

Table S2029. Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ALPK2 MUTATED	0	17	1	0	1
ALPK2 WILD-TYPE	79	109	26	43	11

Figure S873. Get High-res Image Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ALPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.16

Table S2030. Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ALPK2 MUTATED	1	9	1	3
ALPK2 WILD-TYPE	70	67	33	60

Figure S874. Get High-res Image Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ALPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 0.85

Table S2031. Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ALPK2 MUTATED	1	5	3	2	3
ALPK2 WILD-TYPE	15	57	48	63	52

'ALPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.084

Table S2032. Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ALPK2 MUTATED	3	7	3	1
ALPK2 WILD-TYPE	95	37	47	56

Figure S875. Get High-res Image Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.13

Table S2033. Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ALPK2 MUTATED	8	3	3	3	0
ALPK2 WILD-TYPE	54	56	37	34	59

Figure S876. Get High-res Image Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00292 (Fisher's exact test), Q value = 0.033

Table S2034. Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ALPK2 MUTATED	2	2	13
ALPK2 WILD-TYPE	104	52	84

Figure S877. Get High-res Image Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00402 (Fisher's exact test), Q value = 0.04

Table S2035. Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ALPK2 MUTATED	15	3	1
ALPK2 WILD-TYPE	108	92	70

Figure S878. Get High-res Image Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00231 (Fisher's exact test), Q value = 0.03

Table S2036. Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ALPK2 MUTATED	17	2	0
ALPK2 WILD-TYPE	140	61	69

Figure S879. Get High-res Image Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00869 (Fisher's exact test), Q value = 0.062

Table S2037. Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ALPK2 MUTATED	0	4	2	5	0	1
ALPK2 WILD-TYPE	33	15	57	34	16	44

Figure S880. Get High-res Image Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.3

Table S2038. Gene #204: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ALPK2 MUTATED	6	1	2	1	2	0
ALPK2 WILD-TYPE	41	38	33	31	21	35

'RAD51AP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.56

Table S2039. Gene #205: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RAD51AP2 MUTATED	2	9	0	1	0
RAD51AP2 WILD-TYPE	77	117	27	42	12

'RAD51AP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.81

Table S2040. Gene #205: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RAD51AP2 MUTATED	2	5	1	2
RAD51AP2 WILD-TYPE	69	71	33	61

'RAD51AP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S2041. Gene #205: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RAD51AP2 MUTATED	1	3	3	0	3
RAD51AP2 WILD-TYPE	15	59	48	65	52

'RAD51AP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0879 (Fisher's exact test), Q value = 0.22

Table S2042. Gene #205: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RAD51AP2 MUTATED	5	4	1	0
RAD51AP2 WILD-TYPE	93	40	49	57

'RAD51AP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.51

Table S2043. Gene #205: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RAD51AP2 MUTATED	5	1	1	2	1
RAD51AP2 WILD-TYPE	57	58	39	35	58

'RAD51AP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0686 (Fisher's exact test), Q value = 0.19

Table S2044. Gene #205: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RAD51AP2 MUTATED	3	0	7
RAD51AP2 WILD-TYPE	103	54	90

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.07

Table S2045. Gene #205: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RAD51AP2 MUTATED	9	0	3
RAD51AP2 WILD-TYPE	114	95	68

Figure S881. Get High-res Image Gene #205: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S2046. Gene #205: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RAD51AP2 MUTATED	9	0	3
RAD51AP2 WILD-TYPE	148	63	66

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S2047. Gene #205: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RAD51AP2 MUTATED	2	1	1	4	0	0
RAD51AP2 WILD-TYPE	31	18	58	35	16	45

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.75

Table S2048. Gene #205: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RAD51AP2 MUTATED	3	0	1	2	1	1
RAD51AP2 WILD-TYPE	44	39	34	30	22	34

'DNAJC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.11

Table S2049. Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DNAJC1 MUTATED	0	10	1	0	0
DNAJC1 WILD-TYPE	79	116	26	43	12

Figure S882. Get High-res Image Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAJC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.073

Table S2050. Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DNAJC1 MUTATED	0	7	2	1
DNAJC1 WILD-TYPE	71	69	32	62

Figure S883. Get High-res Image Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DNAJC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.38

Table S2051. Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DNAJC1 MUTATED	1	3	3	0	2
DNAJC1 WILD-TYPE	15	59	48	65	53

'DNAJC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0372 (Fisher's exact test), Q value = 0.14

Table S2052. Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DNAJC1 MUTATED	2	4	3	0
DNAJC1 WILD-TYPE	96	40	47	57

Figure S884. Get High-res Image Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DNAJC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00584 (Fisher's exact test), Q value = 0.049

Table S2053. Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DNAJC1 MUTATED	7	1	0	2	0
DNAJC1 WILD-TYPE	55	58	40	35	59

Figure S885. Get High-res Image Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DNAJC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.025 (Fisher's exact test), Q value = 0.11

Table S2054. Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DNAJC1 MUTATED	1	1	8
DNAJC1 WILD-TYPE	105	53	89

Figure S886. Get High-res Image Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0614 (Fisher's exact test), Q value = 0.18

Table S2055. Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DNAJC1 MUTATED	8	3	0
DNAJC1 WILD-TYPE	115	92	71

'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S2056. Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DNAJC1 MUTATED	9	2	0
DNAJC1 WILD-TYPE	148	61	69

'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S2057. Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DNAJC1 MUTATED	1	1	4	2	0	2
DNAJC1 WILD-TYPE	32	18	55	37	16	43

'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.74

Table S2058. Gene #206: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DNAJC1 MUTATED	3	2	3	1	1	0
DNAJC1 WILD-TYPE	44	37	32	31	22	35

'SLC16A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.68

Table S2059. Gene #207: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC16A1 MUTATED	1	5	0	0	0
SLC16A1 WILD-TYPE	78	121	27	43	12

'SLC16A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 0.97

Table S2060. Gene #207: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC16A1 MUTATED	1	2	1	1
SLC16A1 WILD-TYPE	70	74	33	62

'SLC16A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.31

Table S2061. Gene #207: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC16A1 MUTATED	1	2	0	0	2
SLC16A1 WILD-TYPE	15	60	51	65	53

'SLC16A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.61

Table S2062. Gene #207: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC16A1 MUTATED	2	1	2	0
SLC16A1 WILD-TYPE	96	43	48	57

'SLC16A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.42

Table S2063. Gene #207: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC16A1 MUTATED	4	0	1	1	1
SLC16A1 WILD-TYPE	58	59	39	36	58

'SLC16A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.27

Table S2064. Gene #207: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC16A1 MUTATED	2	0	5
SLC16A1 WILD-TYPE	104	54	92

'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0528 (Fisher's exact test), Q value = 0.16

Table S2065. Gene #207: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC16A1 MUTATED	6	0	1
SLC16A1 WILD-TYPE	117	95	70

'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.63

Table S2066. Gene #207: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC16A1 MUTATED	5	0	2
SLC16A1 WILD-TYPE	152	63	67

'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.72

Table S2067. Gene #207: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC16A1 MUTATED	2	0	2	1	0	0
SLC16A1 WILD-TYPE	31	19	57	38	16	45

'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.61

Table S2068. Gene #207: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC16A1 MUTATED	2	0	2	1	0	0
SLC16A1 WILD-TYPE	45	39	33	31	23	35

'GPR160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.34

Table S2069. Gene #208: 'GPR160 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPR160 MUTATED	0	7	0	1	0
GPR160 WILD-TYPE	79	119	27	42	12

'GPR160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.29

Table S2070. Gene #208: 'GPR160 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPR160 MUTATED	1	4	0	0
GPR160 WILD-TYPE	70	72	34	63

'GPR160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.71

Table S2071. Gene #208: 'GPR160 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GPR160 MUTATED	0	3	3	1	1
GPR160 WILD-TYPE	16	59	48	64	54

'GPR160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00038 (Fisher's exact test), Q value = 0.01

Table S2072. Gene #208: 'GPR160 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GPR160 MUTATED	0	5	3	0
GPR160 WILD-TYPE	98	39	47	57

Figure S887. Get High-res Image Gene #208: 'GPR160 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.51

Table S2073. Gene #208: 'GPR160 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GPR160 MUTATED	2	2	2	0	0
GPR160 WILD-TYPE	60	57	38	37	59

'GPR160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.47

Table S2074. Gene #208: 'GPR160 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GPR160 MUTATED	1	1	4
GPR160 WILD-TYPE	105	53	93

'GPR160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S2075. Gene #208: 'GPR160 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GPR160 MUTATED	6	2	0
GPR160 WILD-TYPE	117	93	71

'GPR160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.79

Table S2076. Gene #208: 'GPR160 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GPR160 MUTATED	6	1	1
GPR160 WILD-TYPE	151	62	68

'GPR160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 0.85

Table S2077. Gene #208: 'GPR160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GPR160 MUTATED	1	1	2	0	0	1
GPR160 WILD-TYPE	32	18	57	39	16	44

'GPR160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 0.85

Table S2078. Gene #208: 'GPR160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GPR160 MUTATED	1	1	2	1	0	0
GPR160 WILD-TYPE	46	38	33	31	23	35

'DDX60 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.092

Table S2079. Gene #209: 'DDX60 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DDX60 MUTATED	0	9	0	0	1
DDX60 WILD-TYPE	79	117	27	43	11

Figure S888. Get High-res Image Gene #209: 'DDX60 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX60 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.2

Table S2080. Gene #209: 'DDX60 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DDX60 MUTATED	0	5	0	2
DDX60 WILD-TYPE	71	71	34	61

'DDX60 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0974 (Fisher's exact test), Q value = 0.23

Table S2081. Gene #209: 'DDX60 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DDX60 MUTATED	1	5	1	0	2
DDX60 WILD-TYPE	15	57	50	65	53

'DDX60 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.15

Table S2082. Gene #209: 'DDX60 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DDX60 MUTATED	2	3	4	0
DDX60 WILD-TYPE	96	41	46	57

Figure S889. Get High-res Image Gene #209: 'DDX60 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DDX60 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.18

Table S2083. Gene #209: 'DDX60 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DDX60 MUTATED	5	1	1	0	0
DDX60 WILD-TYPE	57	58	39	37	59

'DDX60 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.56

Table S2084. Gene #209: 'DDX60 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DDX60 MUTATED	3	0	4
DDX60 WILD-TYPE	103	54	93

'DDX60 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0445 (Fisher's exact test), Q value = 0.15

Table S2085. Gene #209: 'DDX60 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DDX60 MUTATED	8	2	0
DDX60 WILD-TYPE	115	93	71

Figure S890. Get High-res Image Gene #209: 'DDX60 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDX60 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0568 (Fisher's exact test), Q value = 0.17

Table S2086. Gene #209: 'DDX60 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DDX60 MUTATED	9	1	0
DDX60 WILD-TYPE	148	62	69

'DDX60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S2087. Gene #209: 'DDX60 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DDX60 MUTATED	1	0	3	1	0	0
DDX60 WILD-TYPE	32	19	56	38	16	45

'DDX60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0478 (Fisher's exact test), Q value = 0.15

Table S2088. Gene #209: 'DDX60 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DDX60 MUTATED	0	0	3	1	1	0
DDX60 WILD-TYPE	47	39	32	31	22	35

Figure S891. Get High-res Image Gene #209: 'DDX60 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0415 (Fisher's exact test), Q value = 0.14

Table S2089. Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OSBP2 MUTATED	0	10	0	1	0
OSBP2 WILD-TYPE	79	116	27	42	12

Figure S892. Get High-res Image Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OSBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0348 (Fisher's exact test), Q value = 0.13

Table S2090. Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OSBP2 MUTATED	1	6	2	0
OSBP2 WILD-TYPE	70	70	32	63

Figure S893. Get High-res Image Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OSBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.68

Table S2091. Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OSBP2 MUTATED	0	2	2	1	4
OSBP2 WILD-TYPE	16	60	49	64	51

'OSBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 0.098

Table S2092. Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OSBP2 MUTATED	1	5	2	1
OSBP2 WILD-TYPE	97	39	48	56

Figure S894. Get High-res Image Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0533 (Fisher's exact test), Q value = 0.16

Table S2093. Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OSBP2 MUTATED	6	1	2	1	0
OSBP2 WILD-TYPE	56	58	38	36	59

'OSBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00258 (Fisher's exact test), Q value = 0.032

Table S2094. Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OSBP2 MUTATED	1	0	9
OSBP2 WILD-TYPE	105	54	88

Figure S895. Get High-res Image Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00304 (Fisher's exact test), Q value = 0.034

Table S2095. Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OSBP2 MUTATED	10	0	1
OSBP2 WILD-TYPE	113	95	70

Figure S896. Get High-res Image Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 0.15

Table S2096. Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OSBP2 MUTATED	10	0	1
OSBP2 WILD-TYPE	147	63	68

Figure S897. Get High-res Image Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.4

Table S2097. Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OSBP2 MUTATED	1	2	3	3	0	0
OSBP2 WILD-TYPE	32	17	56	36	16	45

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.32

Table S2098. Gene #210: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OSBP2 MUTATED	4	0	3	1	1	0
OSBP2 WILD-TYPE	43	39	32	31	22	35

'ERBB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 0.83

Table S2099. Gene #211: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ERBB2 MUTATED	3	9	1	1	0
ERBB2 WILD-TYPE	76	117	26	42	12

'ERBB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.56

Table S2100. Gene #211: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ERBB2 MUTATED	1	5	2	3
ERBB2 WILD-TYPE	70	71	32	60

'ERBB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 0.89

Table S2101. Gene #211: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ERBB2 MUTATED	1	4	2	2	2
ERBB2 WILD-TYPE	15	58	49	63	53

'ERBB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 0.96

Table S2102. Gene #211: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ERBB2 MUTATED	4	2	3	2
ERBB2 WILD-TYPE	94	42	47	55

'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.37

Table S2103. Gene #211: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ERBB2 MUTATED	5	2	1	4	1
ERBB2 WILD-TYPE	57	57	39	33	58

'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.36

Table S2104. Gene #211: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ERBB2 MUTATED	4	1	8
ERBB2 WILD-TYPE	102	53	89

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.24

Table S2105. Gene #211: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ERBB2 MUTATED	10	2	2
ERBB2 WILD-TYPE	113	93	69

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.33

Table S2106. Gene #211: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ERBB2 MUTATED	11	2	1
ERBB2 WILD-TYPE	146	61	68

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.71

Table S2107. Gene #211: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ERBB2 MUTATED	1	1	3	4	0	1
ERBB2 WILD-TYPE	32	18	56	35	16	44

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.68

Table S2108. Gene #211: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ERBB2 MUTATED	3	1	3	2	1	0
ERBB2 WILD-TYPE	44	38	32	30	22	35

'RSF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.49

Table S2109. Gene #212: 'RSF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RSF1 MUTATED	3	11	0	2	1
RSF1 WILD-TYPE	76	115	27	41	11

'RSF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.23

Table S2110. Gene #212: 'RSF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RSF1 MUTATED	4	5	3	0
RSF1 WILD-TYPE	67	71	31	63

'RSF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.29

Table S2111. Gene #212: 'RSF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RSF1 MUTATED	1	7	2	1	5
RSF1 WILD-TYPE	15	55	49	64	50

'RSF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00915 (Fisher's exact test), Q value = 0.063

Table S2112. Gene #212: 'RSF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RSF1 MUTATED	3	7	5	1
RSF1 WILD-TYPE	95	37	45	56

Figure S898. Get High-res Image Gene #212: 'RSF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RSF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.1

Table S2113. Gene #212: 'RSF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RSF1 MUTATED	9	1	3	2	1
RSF1 WILD-TYPE	53	58	37	35	58

Figure S899. Get High-res Image Gene #212: 'RSF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RSF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0073 (Fisher's exact test), Q value = 0.056

Table S2114. Gene #212: 'RSF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RSF1 MUTATED	2	2	12
RSF1 WILD-TYPE	104	52	85

Figure S900. Get High-res Image Gene #212: 'RSF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RSF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.079

Table S2115. Gene #212: 'RSF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RSF1 MUTATED	13	3	1
RSF1 WILD-TYPE	110	92	70

Figure S901. Get High-res Image Gene #212: 'RSF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RSF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.37

Table S2116. Gene #212: 'RSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RSF1 MUTATED	13	2	2
RSF1 WILD-TYPE	144	61	67

'RSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.36

Table S2117. Gene #212: 'RSF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RSF1 MUTATED	1	2	5	2	0	0
RSF1 WILD-TYPE	32	17	54	37	16	45

'RSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0605 (Fisher's exact test), Q value = 0.18

Table S2118. Gene #212: 'RSF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RSF1 MUTATED	5	0	3	2	0	0
RSF1 WILD-TYPE	42	39	32	30	23	35

'KIAA1967 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S2119. Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1967 MUTATED	0	14	0	0	3
KIAA1967 WILD-TYPE	79	112	27	43	9

Figure S902. Get High-res Image Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1967 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0055

Table S2120. Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1967 MUTATED	0	10	2	0
KIAA1967 WILD-TYPE	71	66	32	63

Figure S903. Get High-res Image Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1967 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00948 (Fisher's exact test), Q value = 0.064

Table S2121. Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIAA1967 MUTATED	0	9	3	0	3
KIAA1967 WILD-TYPE	16	53	48	65	52

Figure S904. Get High-res Image Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA1967 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00245 (Fisher's exact test), Q value = 0.031

Table S2122. Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIAA1967 MUTATED	3	6	6	0
KIAA1967 WILD-TYPE	95	38	44	57

Figure S905. Get High-res Image Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1967 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S2123. Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIAA1967 MUTATED	12	1	0	2	0
KIAA1967 WILD-TYPE	50	58	40	35	59

Figure S906. Get High-res Image Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1967 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.011

Table S2124. Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIAA1967 MUTATED	1	1	13
KIAA1967 WILD-TYPE	105	53	84

Figure S907. Get High-res Image Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00297 (Fisher's exact test), Q value = 0.034

Table S2125. Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIAA1967 MUTATED	14	1	2
KIAA1967 WILD-TYPE	109	94	69

Figure S908. Get High-res Image Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00144 (Fisher's exact test), Q value = 0.022

Table S2126. Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIAA1967 MUTATED	16	1	0
KIAA1967 WILD-TYPE	141	62	69

Figure S909. Get High-res Image Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.71

Table S2127. Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIAA1967 MUTATED	1	2	3	3	0	1
KIAA1967 WILD-TYPE	32	17	56	36	16	44

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.57

Table S2128. Gene #213: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIAA1967 MUTATED	4	1	3	1	1	0
KIAA1967 WILD-TYPE	43	38	32	31	22	35

'CNBD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.55

Table S2129. Gene #214: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CNBD1 MUTATED	6	4	0	3	0
CNBD1 WILD-TYPE	73	122	27	40	12

'CNBD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 0.15

Table S2130. Gene #214: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CNBD1 MUTATED	4	6	0	0
CNBD1 WILD-TYPE	67	70	34	63

Figure S910. Get High-res Image Gene #214: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CNBD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.36

Table S2131. Gene #214: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CNBD1 MUTATED	1	1	4	1	4
CNBD1 WILD-TYPE	15	61	47	64	51

'CNBD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.4

Table S2132. Gene #214: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CNBD1 MUTATED	6	3	0	2
CNBD1 WILD-TYPE	92	41	50	55

'CNBD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S2133. Gene #214: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CNBD1 MUTATED	4	1	0	1	6
CNBD1 WILD-TYPE	58	58	40	36	53

'CNBD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.54

Table S2134. Gene #214: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CNBD1 MUTATED	7	1	4
CNBD1 WILD-TYPE	99	53	93

'CNBD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.56

Table S2135. Gene #214: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CNBD1 MUTATED	7	2	4
CNBD1 WILD-TYPE	116	93	67

'CNBD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.45

Table S2136. Gene #214: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CNBD1 MUTATED	7	1	5
CNBD1 WILD-TYPE	150	62	64

'CNBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.48

Table S2137. Gene #214: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CNBD1 MUTATED	1	2	1	3	1	1
CNBD1 WILD-TYPE	32	17	58	36	15	44

'CNBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.076

Table S2138. Gene #214: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CNBD1 MUTATED	3	0	0	5	0	1
CNBD1 WILD-TYPE	44	39	35	27	23	34

Figure S911. Get High-res Image Gene #214: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DLGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.37

Table S2139. Gene #215: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DLGAP3 MUTATED	2	10	0	4	0
DLGAP3 WILD-TYPE	77	116	27	39	12

'DLGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00645 (Fisher's exact test), Q value = 0.052

Table S2140. Gene #215: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DLGAP3 MUTATED	1	11	1	2
DLGAP3 WILD-TYPE	70	65	33	61

Figure S912. Get High-res Image Gene #215: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DLGAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.5

Table S2141. Gene #215: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DLGAP3 MUTATED	1	6	1	2	3
DLGAP3 WILD-TYPE	15	56	50	63	52

'DLGAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0775 (Fisher's exact test), Q value = 0.2

Table S2142. Gene #215: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DLGAP3 MUTATED	2	5	4	2
DLGAP3 WILD-TYPE	96	39	46	55

'DLGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0716 (Fisher's exact test), Q value = 0.19

Table S2143. Gene #215: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DLGAP3 MUTATED	8	1	1	3	2
DLGAP3 WILD-TYPE	54	58	39	34	57

'DLGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S2144. Gene #215: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DLGAP3 MUTATED	5	1	9
DLGAP3 WILD-TYPE	101	53	88

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.14

Table S2145. Gene #215: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DLGAP3 MUTATED	12	2	2
DLGAP3 WILD-TYPE	111	93	69

Figure S913. Get High-res Image Gene #215: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.081 (Fisher's exact test), Q value = 0.21

Table S2146. Gene #215: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DLGAP3 MUTATED	13	2	1
DLGAP3 WILD-TYPE	144	61	68

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.24

Table S2147. Gene #215: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DLGAP3 MUTATED	3	3	2	5	0	1
DLGAP3 WILD-TYPE	30	16	57	34	16	44

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 0.6

Table S2148. Gene #215: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DLGAP3 MUTATED	5	1	2	4	1	1
DLGAP3 WILD-TYPE	42	38	33	28	22	34

'ABCB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0584 (Fisher's exact test), Q value = 0.17

Table S2149. Gene #216: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ABCB6 MUTATED	0	8	0	0	0
ABCB6 WILD-TYPE	79	118	27	43	12

'ABCB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.33

Table S2150. Gene #216: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ABCB6 MUTATED	0	4	1	1
ABCB6 WILD-TYPE	71	72	33	62

'ABCB6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S2151. Gene #216: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ABCB6 MUTATED	1	4	1	0	2
ABCB6 WILD-TYPE	15	58	50	65	53

'ABCB6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.63

Table S2152. Gene #216: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ABCB6 MUTATED	2	2	3	1
ABCB6 WILD-TYPE	96	42	47	56

'ABCB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.18

Table S2153. Gene #216: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ABCB6 MUTATED	4	0	1	1	0
ABCB6 WILD-TYPE	58	59	39	36	59

'ABCB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.75

Table S2154. Gene #216: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ABCB6 MUTATED	3	0	3
ABCB6 WILD-TYPE	103	54	94

'ABCB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.13

Table S2155. Gene #216: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ABCB6 MUTATED	7	1	0
ABCB6 WILD-TYPE	116	94	71

Figure S914. Get High-res Image Gene #216: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.36

Table S2156. Gene #216: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ABCB6 MUTATED	7	0	1
ABCB6 WILD-TYPE	150	63	68

'ABCB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S2157. Gene #216: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ABCB6 MUTATED	0	0	5	1	0	0
ABCB6 WILD-TYPE	33	19	54	38	16	45

'ABCB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.28

Table S2158. Gene #216: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ABCB6 MUTATED	2	0	3	0	1	0
ABCB6 WILD-TYPE	45	39	32	32	22	35

'CYP27B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.63

Table S2159. Gene #217: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CYP27B1 MUTATED	0	4	0	1	0
CYP27B1 WILD-TYPE	79	122	27	42	12

'CYP27B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.74

Table S2160. Gene #217: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CYP27B1 MUTATED	1	3	0	1
CYP27B1 WILD-TYPE	70	73	34	62

'CYP27B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 0.99

Table S2161. Gene #217: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CYP27B1 MUTATED	0	2	1	1	1
CYP27B1 WILD-TYPE	16	60	50	64	54

'CYP27B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0835 (Fisher's exact test), Q value = 0.21

Table S2162. Gene #217: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CYP27B1 MUTATED	0	2	2	1
CYP27B1 WILD-TYPE	98	42	48	56

'CYP27B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.79

Table S2163. Gene #217: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CYP27B1 MUTATED	2	1	1	0	0
CYP27B1 WILD-TYPE	60	58	39	37	59

'CYP27B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.57

Table S2164. Gene #217: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CYP27B1 MUTATED	1	0	3
CYP27B1 WILD-TYPE	105	54	94

'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.65

Table S2165. Gene #217: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CYP27B1 MUTATED	3	2	0
CYP27B1 WILD-TYPE	120	93	71

'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2166. Gene #217: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CYP27B1 MUTATED	3	1	1
CYP27B1 WILD-TYPE	154	62	68

'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 0.19

Table S2167. Gene #217: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CYP27B1 MUTATED	1	2	1	0	1	0
CYP27B1 WILD-TYPE	32	17	58	39	15	45

'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 0.92

Table S2168. Gene #217: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CYP27B1 MUTATED	2	0	1	1	0	1
CYP27B1 WILD-TYPE	45	39	34	31	23	34

'RAB14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.63

Table S2169. Gene #218: 'RAB14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RAB14 MUTATED	1	4	2	1	0
RAB14 WILD-TYPE	78	122	25	42	12

'RAB14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S2170. Gene #218: 'RAB14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RAB14 MUTATED	1	4	1	0
RAB14 WILD-TYPE	70	72	33	63

'RAB14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.31

Table S2171. Gene #218: 'RAB14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RAB14 MUTATED	1	4	1	0	2
RAB14 WILD-TYPE	15	58	50	65	53

'RAB14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00105 (Fisher's exact test), Q value = 0.019

Table S2172. Gene #218: 'RAB14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RAB14 MUTATED	2	6	0	0
RAB14 WILD-TYPE	96	38	50	57

Figure S915. Get High-res Image Gene #218: 'RAB14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RAB14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.79

Table S2173. Gene #218: 'RAB14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RAB14 MUTATED	2	0	1	1	1
RAB14 WILD-TYPE	60	59	39	36	58

'RAB14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S2174. Gene #218: 'RAB14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RAB14 MUTATED	1	0	4
RAB14 WILD-TYPE	105	54	93

'RAB14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.37

Table S2175. Gene #218: 'RAB14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RAB14 MUTATED	6	1	1
RAB14 WILD-TYPE	117	94	70

'RAB14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.79

Table S2176. Gene #218: 'RAB14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RAB14 MUTATED	6	1	1
RAB14 WILD-TYPE	151	62	68

'RAB14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.59

Table S2177. Gene #218: 'RAB14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RAB14 MUTATED	3	0	1	1	0	1
RAB14 WILD-TYPE	30	19	58	38	16	44

'RAB14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 0.85

Table S2178. Gene #218: 'RAB14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RAB14 MUTATED	3	1	1	0	0	1
RAB14 WILD-TYPE	44	38	34	32	23	34

'PODN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.47

Table S2179. Gene #219: 'PODN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PODN MUTATED	1	9	1	1	0
PODN WILD-TYPE	78	117	26	42	12

'PODN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.44

Table S2180. Gene #219: 'PODN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PODN MUTATED	2	6	1	1
PODN WILD-TYPE	69	70	33	62

'PODN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 0.93

Table S2181. Gene #219: 'PODN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PODN MUTATED	1	3	3	2	3
PODN WILD-TYPE	15	59	48	63	52

'PODN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.66

Table S2182. Gene #219: 'PODN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PODN MUTATED	4	4	2	2
PODN WILD-TYPE	94	40	48	55

'PODN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.31

Table S2183. Gene #219: 'PODN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PODN MUTATED	6	1	3	1	1
PODN WILD-TYPE	56	58	37	36	58

'PODN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S2184. Gene #219: 'PODN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PODN MUTATED	5	0	7
PODN WILD-TYPE	101	54	90

'PODN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.28

Table S2185. Gene #219: 'PODN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PODN MUTATED	9	3	1
PODN WILD-TYPE	114	92	70

'PODN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.25

Table S2186. Gene #219: 'PODN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PODN MUTATED	11	1	1
PODN WILD-TYPE	146	62	68

'PODN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.46

Table S2187. Gene #219: 'PODN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PODN MUTATED	1	2	4	2	1	0
PODN WILD-TYPE	32	17	55	37	15	45

'PODN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.55

Table S2188. Gene #219: 'PODN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PODN MUTATED	2	0	3	2	2	1
PODN WILD-TYPE	45	39	32	30	21	34

'WASF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.79

Table S2189. Gene #220: 'WASF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WASF3 MUTATED	2	6	2	1	0
WASF3 WILD-TYPE	77	120	25	42	12

'WASF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.0088

Table S2190. Gene #220: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WASF3 MUTATED	0	9	1	0
WASF3 WILD-TYPE	71	67	33	63

Figure S916. Get High-res Image Gene #220: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WASF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.68

Table S2191. Gene #220: 'WASF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WASF3 MUTATED	0	2	4	2	1
WASF3 WILD-TYPE	16	60	47	63	54

'WASF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0041 (Fisher's exact test), Q value = 0.04

Table S2192. Gene #220: 'WASF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WASF3 MUTATED	1	6	1	1
WASF3 WILD-TYPE	97	38	49	56

Figure S917. Get High-res Image Gene #220: 'WASF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.11

Table S2193. Gene #220: 'WASF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WASF3 MUTATED	5	1	0	3	0
WASF3 WILD-TYPE	57	58	40	34	59

Figure S918. Get High-res Image Gene #220: 'WASF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0483 (Fisher's exact test), Q value = 0.15

Table S2194. Gene #220: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WASF3 MUTATED	1	1	7
WASF3 WILD-TYPE	105	53	90

Figure S919. Get High-res Image Gene #220: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.32

Table S2195. Gene #220: 'WASF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WASF3 MUTATED	8	2	1
WASF3 WILD-TYPE	115	93	70

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S2196. Gene #220: 'WASF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WASF3 MUTATED	9	2	0
WASF3 WILD-TYPE	148	61	69

'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.72

Table S2197. Gene #220: 'WASF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WASF3 MUTATED	0	1	4	2	0	1
WASF3 WILD-TYPE	33	18	55	37	16	44

'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.55

Table S2198. Gene #220: 'WASF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WASF3 MUTATED	2	1	2	3	0	0
WASF3 WILD-TYPE	45	38	33	29	23	35

'ZDHHC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.32

Table S2199. Gene #221: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZDHHC7 MUTATED	0	6	0	0	0
ZDHHC7 WILD-TYPE	79	120	27	43	12

'ZDHHC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.076

Table S2200. Gene #221: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZDHHC7 MUTATED	0	5	0	0
ZDHHC7 WILD-TYPE	71	71	34	63

Figure S920. Get High-res Image Gene #221: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZDHHC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.77

Table S2201. Gene #221: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZDHHC7 MUTATED	0	2	1	0	1
ZDHHC7 WILD-TYPE	16	60	50	65	54

'ZDHHC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.4

Table S2202. Gene #221: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZDHHC7 MUTATED	1	2	1	0
ZDHHC7 WILD-TYPE	97	42	49	57

'ZDHHC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.079

Table S2203. Gene #221: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZDHHC7 MUTATED	5	0	1	0	0
ZDHHC7 WILD-TYPE	57	59	39	37	59

Figure S921. Get High-res Image Gene #221: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZDHHC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00445 (Fisher's exact test), Q value = 0.042

Table S2204. Gene #221: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZDHHC7 MUTATED	0	0	6
ZDHHC7 WILD-TYPE	106	54	91

Figure S922. Get High-res Image Gene #221: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.29

Table S2205. Gene #221: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZDHHC7 MUTATED	5	1	0
ZDHHC7 WILD-TYPE	118	94	71

'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S2206. Gene #221: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZDHHC7 MUTATED	6	0	0
ZDHHC7 WILD-TYPE	151	63	69

'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.32

Table S2207. Gene #221: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZDHHC7 MUTATED	0	1	1	3	0	0
ZDHHC7 WILD-TYPE	33	18	58	36	16	45

'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.74

Table S2208. Gene #221: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZDHHC7 MUTATED	2	0	1	1	1	0
ZDHHC7 WILD-TYPE	45	39	34	31	22	35

'CASC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S2209. Gene #222: 'CASC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CASC3 MUTATED	2	6	0	0	0
CASC3 WILD-TYPE	77	120	27	43	12

'CASC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.49

Table S2210. Gene #222: 'CASC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CASC3 MUTATED	2	5	0	1
CASC3 WILD-TYPE	69	71	34	62

'CASC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.52

Table S2211. Gene #222: 'CASC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CASC3 MUTATED	0	2	2	0	3
CASC3 WILD-TYPE	16	60	49	65	52

'CASC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S2212. Gene #222: 'CASC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CASC3 MUTATED	2	2	3	0
CASC3 WILD-TYPE	96	42	47	57

'CASC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 0.97

Table S2213. Gene #222: 'CASC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CASC3 MUTATED	2	2	1	0	2
CASC3 WILD-TYPE	60	57	39	37	57

'CASC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 0.78

Table S2214. Gene #222: 'CASC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CASC3 MUTATED	2	2	3
CASC3 WILD-TYPE	104	52	94

'CASC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2215. Gene #222: 'CASC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CASC3 MUTATED	3	3	2
CASC3 WILD-TYPE	120	92	69

'CASC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 0.94

Table S2216. Gene #222: 'CASC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CASC3 MUTATED	5	1	2
CASC3 WILD-TYPE	152	62	67

'CASC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.6

Table S2217. Gene #222: 'CASC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CASC3 MUTATED	2	0	1	3	1	1
CASC3 WILD-TYPE	31	19	58	36	15	44

'CASC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.34

Table S2218. Gene #222: 'CASC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CASC3 MUTATED	1	1	0	1	3	2
CASC3 WILD-TYPE	46	38	35	31	20	33

'ABLIM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0631 (Fisher's exact test), Q value = 0.18

Table S2219. Gene #223: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ABLIM2 MUTATED	0	9	0	1	0
ABLIM2 WILD-TYPE	79	117	27	42	12

'ABLIM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S2220. Gene #223: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ABLIM2 MUTATED	1	6	0	2
ABLIM2 WILD-TYPE	70	70	34	61

'ABLIM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.46

Table S2221. Gene #223: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ABLIM2 MUTATED	0	5	3	1	1
ABLIM2 WILD-TYPE	16	57	48	64	54

'ABLIM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.1

Table S2222. Gene #223: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ABLIM2 MUTATED	2	4	4	0
ABLIM2 WILD-TYPE	96	40	46	57

Figure S923. Get High-res Image Gene #223: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ABLIM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.35

Table S2223. Gene #223: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ABLIM2 MUTATED	4	1	2	2	0
ABLIM2 WILD-TYPE	58	58	38	35	59

'ABLIM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0993 (Fisher's exact test), Q value = 0.23

Table S2224. Gene #223: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ABLIM2 MUTATED	1	2	6
ABLIM2 WILD-TYPE	105	52	91

'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 0.18

Table S2225. Gene #223: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ABLIM2 MUTATED	8	3	0
ABLIM2 WILD-TYPE	115	92	71

'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.6

Table S2226. Gene #223: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ABLIM2 MUTATED	8	2	1
ABLIM2 WILD-TYPE	149	61	68

'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.26

Table S2227. Gene #223: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ABLIM2 MUTATED	1	3	3	2	0	0
ABLIM2 WILD-TYPE	32	16	56	37	16	45

'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S2228. Gene #223: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ABLIM2 MUTATED	4	1	2	0	2	0
ABLIM2 WILD-TYPE	43	38	33	32	21	35

'ATM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.24

Table S2229. Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ATM MUTATED	4	20	1	4	1
ATM WILD-TYPE	75	106	26	39	11

'ATM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.017

Table S2230. Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ATM MUTATED	1	16	3	6
ATM WILD-TYPE	70	60	31	57

Figure S924. Get High-res Image Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.56

Table S2231. Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ATM MUTATED	2	9	4	4	8
ATM WILD-TYPE	14	53	47	61	47

'ATM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0961 (Fisher's exact test), Q value = 0.23

Table S2232. Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ATM MUTATED	8	7	9	3
ATM WILD-TYPE	90	37	41	54

'ATM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00394 (Fisher's exact test), Q value = 0.039

Table S2233. Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ATM MUTATED	14	4	4	4	1
ATM WILD-TYPE	48	55	36	33	58

Figure S925. Get High-res Image Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.17

Table S2234. Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ATM MUTATED	7	4	16
ATM WILD-TYPE	99	50	81

'ATM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00876 (Fisher's exact test), Q value = 0.062

Table S2235. Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ATM MUTATED	20	8	2
ATM WILD-TYPE	103	87	69

Figure S926. Get High-res Image Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00552 (Fisher's exact test), Q value = 0.048

Table S2236. Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ATM MUTATED	23	6	1
ATM WILD-TYPE	134	57	68

Figure S927. Get High-res Image Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S2237. Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ATM MUTATED	3	0	8	8	0	4
ATM WILD-TYPE	30	19	51	31	16	41

'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.15

Table S2238. Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ATM MUTATED	6	2	7	5	3	0
ATM WILD-TYPE	41	37	28	27	20	35

Figure S928. Get High-res Image Gene #224: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00056 (Fisher's exact test), Q value = 0.013

Table S2239. Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZC3H13 MUTATED	1	21	4	1	1
ZC3H13 WILD-TYPE	78	105	23	42	11

Figure S929. Get High-res Image Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZC3H13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S2240. Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZC3H13 MUTATED	0	15	3	3
ZC3H13 WILD-TYPE	71	61	31	60

Figure S930. Get High-res Image Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZC3H13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0049 (Fisher's exact test), Q value = 0.044

Table S2241. Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZC3H13 MUTATED	2	10	6	0	6
ZC3H13 WILD-TYPE	14	52	45	65	49

Figure S931. Get High-res Image Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZC3H13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S2242. Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZC3H13 MUTATED	3	14	6	1
ZC3H13 WILD-TYPE	95	30	44	56

Figure S932. Get High-res Image Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.014

Table S2243. Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZC3H13 MUTATED	13	1	4	7	2
ZC3H13 WILD-TYPE	49	58	36	30	57

Figure S933. Get High-res Image Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029

Table S2244. Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZC3H13 MUTATED	3	3	21
ZC3H13 WILD-TYPE	103	51	76

Figure S934. Get High-res Image Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S2245. Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZC3H13 MUTATED	25	2	2
ZC3H13 WILD-TYPE	98	93	69

Figure S935. Get High-res Image Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.082

Table S2246. Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZC3H13 MUTATED	23	2	4
ZC3H13 WILD-TYPE	134	61	65

Figure S936. Get High-res Image Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.28

Table S2247. Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZC3H13 MUTATED	3	4	7	3	0	1
ZC3H13 WILD-TYPE	30	15	52	36	16	44

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S2248. Gene #225: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZC3H13 MUTATED	6	2	6	2	2	0
ZC3H13 WILD-TYPE	41	37	29	30	21	35

'PANK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S2249. Gene #226: 'PANK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PANK1 MUTATED	0	7	1	0	0
PANK1 WILD-TYPE	79	119	26	43	12

'PANK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S2250. Gene #226: 'PANK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PANK1 MUTATED	0	3	2	1
PANK1 WILD-TYPE	71	73	32	62

'PANK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.77

Table S2251. Gene #226: 'PANK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PANK1 MUTATED	0	3	1	1	3
PANK1 WILD-TYPE	16	59	50	64	52

'PANK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S2252. Gene #226: 'PANK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PANK1 MUTATED	1	3	2	2
PANK1 WILD-TYPE	97	41	48	55

'PANK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S2253. Gene #226: 'PANK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PANK1 MUTATED	3	1	1	3	0
PANK1 WILD-TYPE	59	58	39	34	59

'PANK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 0.87

Table S2254. Gene #226: 'PANK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PANK1 MUTATED	3	1	4
PANK1 WILD-TYPE	103	53	93

'PANK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.3

Table S2255. Gene #226: 'PANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PANK1 MUTATED	6	2	0
PANK1 WILD-TYPE	117	93	71

'PANK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 0.86

Table S2256. Gene #226: 'PANK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PANK1 MUTATED	5	2	1
PANK1 WILD-TYPE	152	61	68

'PANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.56

Table S2257. Gene #226: 'PANK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PANK1 MUTATED	0	2	2	1	0	1
PANK1 WILD-TYPE	33	17	57	38	16	44

'PANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.69

Table S2258. Gene #226: 'PANK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PANK1 MUTATED	1	1	1	1	2	0
PANK1 WILD-TYPE	46	38	34	31	21	35

'IRS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0791 (Fisher's exact test), Q value = 0.2

Table S2259. Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IRS4 MUTATED	3	15	2	1	2
IRS4 WILD-TYPE	76	111	25	42	10

'IRS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.019

Table S2260. Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IRS4 MUTATED	3	11	5	0
IRS4 WILD-TYPE	68	65	29	63

Figure S937. Get High-res Image Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IRS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S2261. Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IRS4 MUTATED	0	5	8	2	4
IRS4 WILD-TYPE	16	57	43	63	51

'IRS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0049

Table S2262. Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IRS4 MUTATED	3	11	4	1
IRS4 WILD-TYPE	95	33	46	56

Figure S938. Get High-res Image Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.17

Table S2263. Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IRS4 MUTATED	11	3	3	2	2
IRS4 WILD-TYPE	51	56	37	35	57

'IRS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.085

Table S2264. Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IRS4 MUTATED	6	1	14
IRS4 WILD-TYPE	100	53	83

Figure S939. Get High-res Image Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.15

Table S2265. Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IRS4 MUTATED	15	3	5
IRS4 WILD-TYPE	108	92	66

Figure S940. Get High-res Image Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IRS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.074

Table S2266. Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IRS4 MUTATED	19	3	1
IRS4 WILD-TYPE	138	60	68

Figure S941. Get High-res Image Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.64

Table S2267. Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IRS4 MUTATED	4	1	4	5	0	2
IRS4 WILD-TYPE	29	18	55	34	16	43

'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S2268. Gene #227: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IRS4 MUTATED	6	2	3	2	3	0
IRS4 WILD-TYPE	41	37	32	30	20	35

'KIAA1009 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.74

Table S2269. Gene #228: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1009 MUTATED	3	9	1	1	1
KIAA1009 WILD-TYPE	76	117	26	42	11

'KIAA1009 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S2270. Gene #228: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1009 MUTATED	4	7	2	1
KIAA1009 WILD-TYPE	67	69	32	62

'KIAA1009 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 0.19

Table S2271. Gene #228: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIAA1009 MUTATED	1	6	3	0	2
KIAA1009 WILD-TYPE	15	56	48	65	53

'KIAA1009 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00581 (Fisher's exact test), Q value = 0.049

Table S2272. Gene #228: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIAA1009 MUTATED	1	5	5	1
KIAA1009 WILD-TYPE	97	39	45	56

Figure S942. Get High-res Image Gene #228: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1009 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00815 (Fisher's exact test), Q value = 0.059

Table S2273. Gene #228: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIAA1009 MUTATED	7	0	1	5	2
KIAA1009 WILD-TYPE	55	59	39	32	57

Figure S943. Get High-res Image Gene #228: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1009 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.1

Table S2274. Gene #228: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIAA1009 MUTATED	3	1	11
KIAA1009 WILD-TYPE	103	53	86

Figure S944. Get High-res Image Gene #228: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.19

Table S2275. Gene #228: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIAA1009 MUTATED	11	2	2
KIAA1009 WILD-TYPE	112	93	69

'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.43

Table S2276. Gene #228: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIAA1009 MUTATED	11	1	3
KIAA1009 WILD-TYPE	146	62	66

'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.27

Table S2277. Gene #228: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIAA1009 MUTATED	2	4	3	2	0	1
KIAA1009 WILD-TYPE	31	15	56	37	16	44

'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.098

Table S2278. Gene #228: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIAA1009 MUTATED	7	0	2	0	2	1
KIAA1009 WILD-TYPE	40	39	33	32	21	34

Figure S945. Get High-res Image Gene #228: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.067

Table S2279. Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ADNP2 MUTATED	1	14	2	0	1
ADNP2 WILD-TYPE	78	112	25	43	11

Figure S946. Get High-res Image Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADNP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.011

Table S2280. Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ADNP2 MUTATED	1	9	5	0
ADNP2 WILD-TYPE	70	67	29	63

Figure S947. Get High-res Image Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADNP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.086

Table S2281. Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ADNP2 MUTATED	1	8	4	0	2
ADNP2 WILD-TYPE	15	54	47	65	53

Figure S948. Get High-res Image Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ADNP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029

Table S2282. Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ADNP2 MUTATED	2	10	3	0
ADNP2 WILD-TYPE	96	34	47	57

Figure S949. Get High-res Image Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0053

Table S2283. Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ADNP2 MUTATED	10	0	2	4	0
ADNP2 WILD-TYPE	52	59	38	33	59

Figure S950. Get High-res Image Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00111 (Fisher's exact test), Q value = 0.019

Table S2284. Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ADNP2 MUTATED	3	0	13
ADNP2 WILD-TYPE	103	54	84

Figure S951. Get High-res Image Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0042

Table S2285. Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ADNP2 MUTATED	16	0	2
ADNP2 WILD-TYPE	107	95	69

Figure S952. Get High-res Image Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0042

Table S2286. Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ADNP2 MUTATED	18	0	0
ADNP2 WILD-TYPE	139	63	69

Figure S953. Get High-res Image Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0453 (Fisher's exact test), Q value = 0.15

Table S2287. Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ADNP2 MUTATED	1	3	7	3	0	0
ADNP2 WILD-TYPE	32	16	52	36	16	45

Figure S954. Get High-res Image Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0213 (Fisher's exact test), Q value = 0.099

Table S2288. Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ADNP2 MUTATED	6	0	5	2	1	0
ADNP2 WILD-TYPE	41	39	30	30	22	35

Figure S955. Get High-res Image Gene #229: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF124 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.45

Table S2289. Gene #230: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF124 MUTATED	1	7	1	0	0
ZNF124 WILD-TYPE	78	119	26	43	12

'ZNF124 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.55

Table S2290. Gene #230: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF124 MUTATED	1	4	0	1
ZNF124 WILD-TYPE	70	72	34	62

'ZNF124 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.14

Table S2291. Gene #230: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZNF124 MUTATED	2	4	1	0	1
ZNF124 WILD-TYPE	14	58	50	65	54

Figure S956. Get High-res Image Gene #230: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZNF124 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0552 (Fisher's exact test), Q value = 0.17

Table S2292. Gene #230: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZNF124 MUTATED	2	4	2	0
ZNF124 WILD-TYPE	96	40	48	57

'ZNF124 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00407 (Fisher's exact test), Q value = 0.04

Table S2293. Gene #230: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZNF124 MUTATED	6	0	2	0	0
ZNF124 WILD-TYPE	56	59	38	37	59

Figure S957. Get High-res Image Gene #230: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF124 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.082

Table S2294. Gene #230: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZNF124 MUTATED	1	0	7
ZNF124 WILD-TYPE	105	54	90

Figure S958. Get High-res Image Gene #230: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF124 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.3

Table S2295. Gene #230: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZNF124 MUTATED	7	1	1
ZNF124 WILD-TYPE	116	94	70

'ZNF124 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 0.099

Table S2296. Gene #230: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZNF124 MUTATED	9	0	0
ZNF124 WILD-TYPE	148	63	69

Figure S959. Get High-res Image Gene #230: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.59

Table S2297. Gene #230: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZNF124 MUTATED	0	1	2	2	0	0
ZNF124 WILD-TYPE	33	18	57	37	16	45

'ZNF124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.61

Table S2298. Gene #230: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZNF124 MUTATED	1	0	2	1	1	0
ZNF124 WILD-TYPE	46	39	33	31	22	35

'INTS12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.55

Table S2299. Gene #231: 'INTS12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
INTS12 MUTATED	0	5	0	1	0
INTS12 WILD-TYPE	79	121	27	42	12

'INTS12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.42

Table S2300. Gene #231: 'INTS12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
INTS12 MUTATED	0	3	0	1
INTS12 WILD-TYPE	71	73	34	62

'INTS12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S2301. Gene #231: 'INTS12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
INTS12 MUTATED	0	1	1	2	2
INTS12 WILD-TYPE	16	61	50	63	53

'INTS12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00505 (Fisher's exact test), Q value = 0.045

Table S2302. Gene #231: 'INTS12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
INTS12 MUTATED	0	4	0	2
INTS12 WILD-TYPE	98	40	50	55

Figure S960. Get High-res Image Gene #231: 'INTS12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'INTS12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.57

Table S2303. Gene #231: 'INTS12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
INTS12 MUTATED	2	2	0	0	0
INTS12 WILD-TYPE	60	57	40	37	59

'INTS12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.77

Table S2304. Gene #231: 'INTS12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
INTS12 MUTATED	2	0	2
INTS12 WILD-TYPE	104	54	95

'INTS12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S2305. Gene #231: 'INTS12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
INTS12 MUTATED	5	1	0
INTS12 WILD-TYPE	118	94	71

'INTS12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.61

Table S2306. Gene #231: 'INTS12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
INTS12 MUTATED	5	0	1
INTS12 WILD-TYPE	152	63	68

'INTS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.51

Table S2307. Gene #231: 'INTS12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
INTS12 MUTATED	1	0	2	0	1	0
INTS12 WILD-TYPE	32	19	57	39	15	45

'INTS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 0.84

Table S2308. Gene #231: 'INTS12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
INTS12 MUTATED	2	0	1	0	0	1
INTS12 WILD-TYPE	45	39	34	32	23	34

'DNAH5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.13

Table S2309. Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DNAH5 MUTATED	10	34	2	6	3
DNAH5 WILD-TYPE	69	92	25	37	9

Figure S961. Get High-res Image Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAH5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.013

Table S2310. Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DNAH5 MUTATED	6	25	8	7
DNAH5 WILD-TYPE	65	51	26	56

Figure S962. Get High-res Image Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DNAH5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.55

Table S2311. Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DNAH5 MUTATED	2	17	8	10	12
DNAH5 WILD-TYPE	14	45	43	55	43

'DNAH5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0684 (Fisher's exact test), Q value = 0.19

Table S2312. Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DNAH5 MUTATED	16	15	10	8
DNAH5 WILD-TYPE	82	29	40	49

'DNAH5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00277 (Fisher's exact test), Q value = 0.033

Table S2313. Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DNAH5 MUTATED	23	6	6	8	8
DNAH5 WILD-TYPE	39	53	34	29	51

Figure S963. Get High-res Image Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DNAH5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.074 (Fisher's exact test), Q value = 0.2

Table S2314. Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DNAH5 MUTATED	23	5	23
DNAH5 WILD-TYPE	83	49	74

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00052 (Fisher's exact test), Q value = 0.012

Table S2315. Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DNAH5 MUTATED	37	11	8
DNAH5 WILD-TYPE	86	84	63

Figure S964. Get High-res Image Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.013

Table S2316. Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DNAH5 MUTATED	43	5	8
DNAH5 WILD-TYPE	114	58	61

Figure S965. Get High-res Image Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.12

Table S2317. Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DNAH5 MUTATED	4	3	18	10	4	3
DNAH5 WILD-TYPE	29	16	41	29	12	42

Figure S966. Get High-res Image Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00563 (Fisher's exact test), Q value = 0.048

Table S2318. Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DNAH5 MUTATED	10	2	11	11	5	3
DNAH5 WILD-TYPE	37	37	24	21	18	32

Figure S967. Get High-res Image Gene #232: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CSF3R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.17

Table S2319. Gene #233: 'CSF3R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CSF3R MUTATED	0	8	2	1	1
CSF3R WILD-TYPE	79	118	25	42	11

'CSF3R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00097 (Fisher's exact test), Q value = 0.018

Table S2320. Gene #233: 'CSF3R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CSF3R MUTATED	0	8	1	0
CSF3R WILD-TYPE	71	68	33	63

Figure S968. Get High-res Image Gene #233: 'CSF3R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSF3R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S2321. Gene #233: 'CSF3R MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CSF3R MUTATED	1	3	3	0	4
CSF3R WILD-TYPE	15	59	48	65	51

'CSF3R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.61

Table S2322. Gene #233: 'CSF3R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CSF3R MUTATED	3	4	2	2
CSF3R WILD-TYPE	95	40	48	55

'CSF3R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S2323. Gene #233: 'CSF3R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CSF3R MUTATED	5	2	2	3	0
CSF3R WILD-TYPE	57	57	38	34	59

'CSF3R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00438 (Fisher's exact test), Q value = 0.042

Table S2324. Gene #233: 'CSF3R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CSF3R MUTATED	1	1	10
CSF3R WILD-TYPE	105	53	87

Figure S969. Get High-res Image Gene #233: 'CSF3R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.092

Table S2325. Gene #233: 'CSF3R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CSF3R MUTATED	10	1	1
CSF3R WILD-TYPE	113	94	70

Figure S970. Get High-res Image Gene #233: 'CSF3R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S2326. Gene #233: 'CSF3R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CSF3R MUTATED	10	1	1
CSF3R WILD-TYPE	147	62	68

'CSF3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.69

Table S2327. Gene #233: 'CSF3R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CSF3R MUTATED	1	2	4	1	0	1
CSF3R WILD-TYPE	32	17	55	38	16	44

'CSF3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.67

Table S2328. Gene #233: 'CSF3R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CSF3R MUTATED	3	1	3	1	1	0
CSF3R WILD-TYPE	44	38	32	31	22	35

'IDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.35

Table S2329. Gene #234: 'IDH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IDH2 MUTATED	0	3	0	0	1
IDH2 WILD-TYPE	79	123	27	43	11

'IDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.65

Table S2330. Gene #234: 'IDH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IDH2 MUTATED	0	2	1	1
IDH2 WILD-TYPE	71	74	33	62

'IDH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.73

Table S2331. Gene #234: 'IDH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IDH2 MUTATED	0	2	0	1	0
IDH2 WILD-TYPE	16	60	51	64	55

'IDH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.45

Table S2332. Gene #234: 'IDH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IDH2 MUTATED	0	1	1	1
IDH2 WILD-TYPE	98	43	49	56

'IDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.49

Table S2333. Gene #234: 'IDH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IDH2 MUTATED	2	0	1	1	0
IDH2 WILD-TYPE	60	59	39	36	59

'IDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.77

Table S2334. Gene #234: 'IDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IDH2 MUTATED	2	0	2
IDH2 WILD-TYPE	104	54	95

'IDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.51

Table S2335. Gene #234: 'IDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IDH2 MUTATED	3	0	1
IDH2 WILD-TYPE	120	95	70

'IDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 0.75

Table S2336. Gene #234: 'IDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IDH2 MUTATED	3	1	0
IDH2 WILD-TYPE	154	62	69

'IDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.47

Table S2337. Gene #234: 'IDH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IDH2 MUTATED	1	0	1	0	1	0
IDH2 WILD-TYPE	32	19	58	39	15	45

'IDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 0.89

Table S2338. Gene #234: 'IDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IDH2 MUTATED	1	0	1	1	0	0
IDH2 WILD-TYPE	46	39	34	31	23	35

'PIGO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.093

Table S2339. Gene #235: 'PIGO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIGO MUTATED	0	9	0	0	1
PIGO WILD-TYPE	79	117	27	43	11

Figure S971. Get High-res Image Gene #235: 'PIGO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIGO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.011

Table S2340. Gene #235: 'PIGO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIGO MUTATED	0	9	1	0
PIGO WILD-TYPE	71	67	33	63

Figure S972. Get High-res Image Gene #235: 'PIGO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIGO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.36

Table S2341. Gene #235: 'PIGO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PIGO MUTATED	0	3	2	0	4
PIGO WILD-TYPE	16	59	49	65	51

'PIGO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.084

Table S2342. Gene #235: 'PIGO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PIGO MUTATED	2	5	2	0
PIGO WILD-TYPE	96	39	48	57

Figure S973. Get High-res Image Gene #235: 'PIGO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PIGO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.093

Table S2343. Gene #235: 'PIGO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PIGO MUTATED	6	1	1	0	0
PIGO WILD-TYPE	56	58	39	37	59

Figure S974. Get High-res Image Gene #235: 'PIGO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIGO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0897 (Fisher's exact test), Q value = 0.22

Table S2344. Gene #235: 'PIGO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PIGO MUTATED	1	1	6
PIGO WILD-TYPE	105	53	91

'PIGO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.71

Table S2345. Gene #235: 'PIGO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PIGO MUTATED	6	2	2
PIGO WILD-TYPE	117	93	69

'PIGO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 0.17

Table S2346. Gene #235: 'PIGO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PIGO MUTATED	9	1	0
PIGO WILD-TYPE	148	62	69

'PIGO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.81

Table S2347. Gene #235: 'PIGO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PIGO MUTATED	2	0	2	3	0	1
PIGO WILD-TYPE	31	19	57	36	16	44

'PIGO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.69

Table S2348. Gene #235: 'PIGO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PIGO MUTATED	3	1	2	2	0	0
PIGO WILD-TYPE	44	38	33	30	23	35

'MASTL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0849 (Fisher's exact test), Q value = 0.21

Table S2349. Gene #236: 'MASTL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MASTL MUTATED	0	8	2	1	0
MASTL WILD-TYPE	79	118	25	42	12

'MASTL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.16

Table S2350. Gene #236: 'MASTL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MASTL MUTATED	0	5	3	2
MASTL WILD-TYPE	71	71	31	61

Figure S975. Get High-res Image Gene #236: 'MASTL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MASTL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.56

Table S2351. Gene #236: 'MASTL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MASTL MUTATED	1	2	4	1	3
MASTL WILD-TYPE	15	60	47	64	52

'MASTL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.61

Table S2352. Gene #236: 'MASTL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MASTL MUTATED	3	4	2	2
MASTL WILD-TYPE	95	40	48	55

'MASTL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.088

Table S2353. Gene #236: 'MASTL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MASTL MUTATED	7	1	1	1	0
MASTL WILD-TYPE	55	58	39	36	59

Figure S976. Get High-res Image Gene #236: 'MASTL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MASTL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.41

Table S2354. Gene #236: 'MASTL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MASTL MUTATED	5	0	5
MASTL WILD-TYPE	101	54	92

'MASTL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.099

Table S2355. Gene #236: 'MASTL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MASTL MUTATED	9	2	0
MASTL WILD-TYPE	114	93	71

Figure S977. Get High-res Image Gene #236: 'MASTL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MASTL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.42

Table S2356. Gene #236: 'MASTL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MASTL MUTATED	9	1	1
MASTL WILD-TYPE	148	62	68

'MASTL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.33

Table S2357. Gene #236: 'MASTL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MASTL MUTATED	1	1	6	1	1	0
MASTL WILD-TYPE	32	18	53	38	15	45

'MASTL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0757 (Fisher's exact test), Q value = 0.2

Table S2358. Gene #236: 'MASTL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MASTL MUTATED	1	0	5	2	1	1
MASTL WILD-TYPE	46	39	30	30	22	34

'RNF111 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.18

Table S2359. Gene #237: 'RNF111 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RNF111 MUTATED	0	9	0	1	0
RNF111 WILD-TYPE	79	117	27	42	12

'RNF111 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.24

Table S2360. Gene #237: 'RNF111 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RNF111 MUTATED	0	4	0	1
RNF111 WILD-TYPE	71	72	34	62

'RNF111 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.33

Table S2361. Gene #237: 'RNF111 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RNF111 MUTATED	1	3	2	0	4
RNF111 WILD-TYPE	15	59	49	65	51

'RNF111 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.082

Table S2362. Gene #237: 'RNF111 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RNF111 MUTATED	2	6	1	1
RNF111 WILD-TYPE	96	38	49	56

Figure S978. Get High-res Image Gene #237: 'RNF111 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RNF111 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S2363. Gene #237: 'RNF111 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RNF111 MUTATED	3	2	1	3	0
RNF111 WILD-TYPE	59	57	39	34	59

'RNF111 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.67

Table S2364. Gene #237: 'RNF111 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RNF111 MUTATED	3	1	5
RNF111 WILD-TYPE	103	53	92

'RNF111 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0818 (Fisher's exact test), Q value = 0.21

Table S2365. Gene #237: 'RNF111 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RNF111 MUTATED	8	1	1
RNF111 WILD-TYPE	115	94	70

'RNF111 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.49

Table S2366. Gene #237: 'RNF111 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RNF111 MUTATED	8	1	1
RNF111 WILD-TYPE	149	62	68

'RNF111 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 0.85

Table S2367. Gene #237: 'RNF111 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RNF111 MUTATED	1	1	2	0	0	1
RNF111 WILD-TYPE	32	18	57	39	16	44

'RNF111 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0944 (Fisher's exact test), Q value = 0.23

Table S2368. Gene #237: 'RNF111 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RNF111 MUTATED	0	0	2	2	1	0
RNF111 WILD-TYPE	47	39	33	30	22	35

'KIAA0406 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.6

Table S2369. Gene #238: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA0406 MUTATED	1	8	1	2	0
KIAA0406 WILD-TYPE	78	118	26	41	12

'KIAA0406 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.092

Table S2370. Gene #238: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA0406 MUTATED	1	7	1	0
KIAA0406 WILD-TYPE	70	69	33	63

Figure S979. Get High-res Image Gene #238: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0406 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2371. Gene #238: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIAA0406 MUTATED	0	3	2	3	3
KIAA0406 WILD-TYPE	16	59	49	62	52

'KIAA0406 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00168 (Fisher's exact test), Q value = 0.025

Table S2372. Gene #238: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIAA0406 MUTATED	1	7	1	2
KIAA0406 WILD-TYPE	97	37	49	55

Figure S980. Get High-res Image Gene #238: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0406 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.45

Table S2373. Gene #238: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIAA0406 MUTATED	6	1	1	1	2
KIAA0406 WILD-TYPE	56	58	39	36	57

'KIAA0406 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.39

Table S2374. Gene #238: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIAA0406 MUTATED	3	1	7
KIAA0406 WILD-TYPE	103	53	90

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 0.23

Table S2375. Gene #238: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIAA0406 MUTATED	9	2	1
KIAA0406 WILD-TYPE	114	93	70

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0227 (Fisher's exact test), Q value = 0.1

Table S2376. Gene #238: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIAA0406 MUTATED	11	1	0
KIAA0406 WILD-TYPE	146	62	69

Figure S981. Get High-res Image Gene #238: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.1

Table S2377. Gene #238: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIAA0406 MUTATED	3	3	1	1	0	0
KIAA0406 WILD-TYPE	30	16	58	38	16	45

Figure S982. Get High-res Image Gene #238: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S2378. Gene #238: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIAA0406 MUTATED	5	0	1	1	1	0
KIAA0406 WILD-TYPE	42	39	34	31	22	35

'SF3B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.069

Table S2379. Gene #239: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SF3B2 MUTATED	1	14	2	0	0
SF3B2 WILD-TYPE	78	112	25	43	12

Figure S983. Get High-res Image Gene #239: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SF3B2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S2380. Gene #239: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SF3B2 MUTATED	1	8	2	3
SF3B2 WILD-TYPE	70	68	32	60

'SF3B2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S2381. Gene #239: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SF3B2 MUTATED	3	4	2	1	4
SF3B2 WILD-TYPE	13	58	49	64	51

'SF3B2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0233 (Fisher's exact test), Q value = 0.1

Table S2382. Gene #239: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SF3B2 MUTATED	4	7	2	1
SF3B2 WILD-TYPE	94	37	48	56

Figure S984. Get High-res Image Gene #239: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SF3B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.014

Table S2383. Gene #239: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SF3B2 MUTATED	10	1	1	2	0
SF3B2 WILD-TYPE	52	58	39	35	59

Figure S985. Get High-res Image Gene #239: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SF3B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.28

Table S2384. Gene #239: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SF3B2 MUTATED	4	1	9
SF3B2 WILD-TYPE	102	53	88

'SF3B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.077

Table S2385. Gene #239: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SF3B2 MUTATED	13	3	1
SF3B2 WILD-TYPE	110	92	70

Figure S986. Get High-res Image Gene #239: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SF3B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0637 (Fisher's exact test), Q value = 0.18

Table S2386. Gene #239: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SF3B2 MUTATED	14	2	1
SF3B2 WILD-TYPE	143	61	68

'SF3B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.56

Table S2387. Gene #239: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SF3B2 MUTATED	1	2	6	3	0	1
SF3B2 WILD-TYPE	32	17	53	36	16	44

'SF3B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.35

Table S2388. Gene #239: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SF3B2 MUTATED	6	1	3	2	1	0
SF3B2 WILD-TYPE	41	38	32	30	22	35

'SBNO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.26

Table S2389. Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SBNO1 MUTATED	1	10	3	2	1
SBNO1 WILD-TYPE	78	116	24	41	11

'SBNO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0086 (Fisher's exact test), Q value = 0.062

Table S2390. Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SBNO1 MUTATED	1	11	2	2
SBNO1 WILD-TYPE	70	65	32	61

Figure S987. Get High-res Image Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SBNO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.099

Table S2391. Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SBNO1 MUTATED	1	4	7	0	5
SBNO1 WILD-TYPE	15	58	44	65	50

Figure S988. Get High-res Image Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SBNO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.082

Table S2392. Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SBNO1 MUTATED	5	8	3	1
SBNO1 WILD-TYPE	93	36	47	56

Figure S989. Get High-res Image Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0021 (Fisher's exact test), Q value = 0.028

Table S2393. Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SBNO1 MUTATED	9	1	2	4	0
SBNO1 WILD-TYPE	53	58	38	33	59

Figure S990. Get High-res Image Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00129 (Fisher's exact test), Q value = 0.021

Table S2394. Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SBNO1 MUTATED	2	1	13
SBNO1 WILD-TYPE	104	53	84

Figure S991. Get High-res Image Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.1

Table S2395. Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SBNO1 MUTATED	13	2	2
SBNO1 WILD-TYPE	110	93	69

Figure S992. Get High-res Image Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00607 (Fisher's exact test), Q value = 0.05

Table S2396. Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SBNO1 MUTATED	15	2	0
SBNO1 WILD-TYPE	142	61	69

Figure S993. Get High-res Image Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.31

Table S2397. Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SBNO1 MUTATED	1	3	4	5	0	1
SBNO1 WILD-TYPE	32	16	55	34	16	44

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.24

Table S2398. Gene #240: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SBNO1 MUTATED	6	1	4	1	2	0
SBNO1 WILD-TYPE	41	38	31	31	21	35

'POP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.75

Table S2399. Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
POP1 MUTATED	3	11	1	3	0
POP1 WILD-TYPE	76	115	26	40	12

'POP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.35

Table S2400. Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
POP1 MUTATED	1	6	3	3
POP1 WILD-TYPE	70	70	31	60

'POP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.17

Table S2401. Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
POP1 MUTATED	2	9	2	2	2
POP1 WILD-TYPE	14	53	49	63	53

'POP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.07

Table S2402. Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
POP1 MUTATED	3	8	4	2
POP1 WILD-TYPE	95	36	46	55

Figure S994. Get High-res Image Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'POP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.14

Table S2403. Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
POP1 MUTATED	10	2	1	1	3
POP1 WILD-TYPE	52	57	39	36	56

Figure S995. Get High-res Image Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'POP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0308 (Fisher's exact test), Q value = 0.12

Table S2404. Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
POP1 MUTATED	7	0	10
POP1 WILD-TYPE	99	54	87

Figure S996. Get High-res Image Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'POP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.013

Table S2405. Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
POP1 MUTATED	16	1	2
POP1 WILD-TYPE	107	94	69

Figure S997. Get High-res Image Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'POP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.092

Table S2406. Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
POP1 MUTATED	15	0	4
POP1 WILD-TYPE	142	63	65

Figure S998. Get High-res Image Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'POP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.33

Table S2407. Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
POP1 MUTATED	2	2	3	3	2	0
POP1 WILD-TYPE	31	17	56	36	14	45

'POP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.63

Table S2408. Gene #241: 'POP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
POP1 MUTATED	4	0	3	2	1	2
POP1 WILD-TYPE	43	39	32	30	22	33

'FZD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.27

Table S2409. Gene #242: 'FZD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FZD3 MUTATED	1	9	0	0	0
FZD3 WILD-TYPE	78	117	27	43	12

'FZD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.13

Table S2410. Gene #242: 'FZD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FZD3 MUTATED	0	6	1	1
FZD3 WILD-TYPE	71	70	33	62

Figure S999. Get High-res Image Gene #242: 'FZD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FZD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.52

Table S2411. Gene #242: 'FZD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FZD3 MUTATED	0	5	2	1	1
FZD3 WILD-TYPE	16	57	49	64	54

'FZD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.037 (Fisher's exact test), Q value = 0.13

Table S2412. Gene #242: 'FZD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FZD3 MUTATED	2	4	3	0
FZD3 WILD-TYPE	96	40	47	57

Figure S1000. Get High-res Image Gene #242: 'FZD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FZD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.63

Table S2413. Gene #242: 'FZD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FZD3 MUTATED	3	1	0	2	1
FZD3 WILD-TYPE	59	58	40	35	58

'FZD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2414. Gene #242: 'FZD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FZD3 MUTATED	3	1	3
FZD3 WILD-TYPE	103	53	94

'FZD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.067

Table S2415. Gene #242: 'FZD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FZD3 MUTATED	9	1	0
FZD3 WILD-TYPE	114	94	71

Figure S1001. Get High-res Image Gene #242: 'FZD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FZD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0565 (Fisher's exact test), Q value = 0.17

Table S2416. Gene #242: 'FZD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FZD3 MUTATED	9	1	0
FZD3 WILD-TYPE	148	62	69

'FZD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.65

Table S2417. Gene #242: 'FZD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FZD3 MUTATED	2	1	3	2	0	0
FZD3 WILD-TYPE	31	18	56	37	16	45

'FZD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.4

Table S2418. Gene #242: 'FZD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FZD3 MUTATED	3	0	2	1	2	0
FZD3 WILD-TYPE	44	39	33	31	21	35

'RING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.57

Table S2419. Gene #243: 'RING1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RING1 MUTATED	1	5	0	1	1
RING1 WILD-TYPE	78	121	27	42	11

'RING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.51

Table S2420. Gene #243: 'RING1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RING1 MUTATED	0	3	1	2
RING1 WILD-TYPE	71	73	33	61

'RING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.36

Table S2421. Gene #243: 'RING1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RING1 MUTATED	1	3	3	1	0
RING1 WILD-TYPE	15	59	48	64	55

'RING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.56

Table S2422. Gene #243: 'RING1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RING1 MUTATED	2	3	2	1
RING1 WILD-TYPE	96	41	48	56

'RING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.13

Table S2423. Gene #243: 'RING1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RING1 MUTATED	5	2	0	0	0
RING1 WILD-TYPE	57	57	40	37	59

Figure S1002. Get High-res Image Gene #243: 'RING1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.65

Table S2424. Gene #243: 'RING1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RING1 MUTATED	4	0	3
RING1 WILD-TYPE	102	54	94

'RING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.11

Table S2425. Gene #243: 'RING1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RING1 MUTATED	7	0	1
RING1 WILD-TYPE	116	95	70

Figure S1003. Get High-res Image Gene #243: 'RING1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.36

Table S2426. Gene #243: 'RING1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RING1 MUTATED	7	0	1
RING1 WILD-TYPE	150	63	68

'RING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0612 (Fisher's exact test), Q value = 0.18

Table S2427. Gene #243: 'RING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RING1 MUTATED	0	0	5	0	0	0
RING1 WILD-TYPE	33	19	54	39	16	45

'RING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.25

Table S2428. Gene #243: 'RING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RING1 MUTATED	0	0	3	1	0	1
RING1 WILD-TYPE	47	39	32	31	23	34

'PIK3R3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.2

Table S2429. Gene #244: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIK3R3 MUTATED	0	6	1	0	1
PIK3R3 WILD-TYPE	79	120	26	43	11

'PIK3R3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.33

Table S2430. Gene #244: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIK3R3 MUTATED	0	4	1	1
PIK3R3 WILD-TYPE	71	72	33	62

'PIK3R3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2431. Gene #244: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PIK3R3 MUTATED	0	2	1	2	2
PIK3R3 WILD-TYPE	16	60	50	63	53

'PIK3R3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 0.99

Table S2432. Gene #244: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PIK3R3 MUTATED	3	1	2	1
PIK3R3 WILD-TYPE	95	43	48	56

'PIK3R3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.17

Table S2433. Gene #244: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PIK3R3 MUTATED	5	1	0	1	0
PIK3R3 WILD-TYPE	57	58	40	36	59

'PIK3R3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.78

Table S2434. Gene #244: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PIK3R3 MUTATED	2	2	3
PIK3R3 WILD-TYPE	104	52	94

'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.75

Table S2435. Gene #244: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PIK3R3 MUTATED	5	2	1
PIK3R3 WILD-TYPE	118	93	70

'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S2436. Gene #244: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PIK3R3 MUTATED	7	1	0
PIK3R3 WILD-TYPE	150	62	69

'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.56

Table S2437. Gene #244: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PIK3R3 MUTATED	1	1	1	1	1	0
PIK3R3 WILD-TYPE	32	18	58	38	15	45

'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.42

Table S2438. Gene #244: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PIK3R3 MUTATED	1	0	1	1	2	0
PIK3R3 WILD-TYPE	46	39	34	31	21	35

'PCGF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.37

Table S2439. Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PCGF3 MUTATED	0	5	1	0	0
PCGF3 WILD-TYPE	79	121	26	43	12

'PCGF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.1

Table S2440. Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PCGF3 MUTATED	0	5	1	0
PCGF3 WILD-TYPE	71	71	33	63

Figure S1004. Get High-res Image Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCGF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.61

Table S2441. Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PCGF3 MUTATED	0	1	2	0	2
PCGF3 WILD-TYPE	16	61	49	65	53

'PCGF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00189 (Fisher's exact test), Q value = 0.027

Table S2442. Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PCGF3 MUTATED	0	4	1	0
PCGF3 WILD-TYPE	98	40	49	57

Figure S1005. Get High-res Image Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PCGF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.072

Table S2443. Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PCGF3 MUTATED	2	0	0	3	0
PCGF3 WILD-TYPE	60	59	40	34	59

Figure S1006. Get High-res Image Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PCGF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.08

Table S2444. Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PCGF3 MUTATED	0	0	5
PCGF3 WILD-TYPE	106	54	92

Figure S1007. Get High-res Image Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PCGF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.083

Table S2445. Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PCGF3 MUTATED	6	0	0
PCGF3 WILD-TYPE	117	95	71

Figure S1008. Get High-res Image Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PCGF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S2446. Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PCGF3 MUTATED	6	0	0
PCGF3 WILD-TYPE	151	63	69

'PCGF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.15

Table S2447. Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PCGF3 MUTATED	1	3	1	1	0	0
PCGF3 WILD-TYPE	32	16	58	38	16	45

Figure S1009. Get High-res Image Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PCGF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S2448. Gene #245: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PCGF3 MUTATED	3	0	0	2	1	0
PCGF3 WILD-TYPE	44	39	35	30	22	35

'ZNF608 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00196 (Fisher's exact test), Q value = 0.027

Table S2449. Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF608 MUTATED	0	13	0	0	1
ZNF608 WILD-TYPE	79	113	27	43	11

Figure S1010. Get High-res Image Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF608 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00101 (Fisher's exact test), Q value = 0.018

Table S2450. Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF608 MUTATED	0	8	1	0
ZNF608 WILD-TYPE	71	68	33	63

Figure S1011. Get High-res Image Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF608 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.49

Table S2451. Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZNF608 MUTATED	0	5	4	1	4
ZNF608 WILD-TYPE	16	57	47	64	51

'ZNF608 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00272 (Fisher's exact test), Q value = 0.032

Table S2452. Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZNF608 MUTATED	1	7	4	2
ZNF608 WILD-TYPE	97	37	46	55

Figure S1012. Get High-res Image Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00539 (Fisher's exact test), Q value = 0.047

Table S2453. Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZNF608 MUTATED	8	3	1	0	0
ZNF608 WILD-TYPE	54	56	39	37	59

Figure S1013. Get High-res Image Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S2454. Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZNF608 MUTATED	2	2	8
ZNF608 WILD-TYPE	104	52	89

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.066

Table S2455. Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZNF608 MUTATED	12	1	2
ZNF608 WILD-TYPE	111	94	69

Figure S1014. Get High-res Image Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0418 (Fisher's exact test), Q value = 0.14

Table S2456. Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZNF608 MUTATED	13	1	1
ZNF608 WILD-TYPE	144	62	68

Figure S1015. Get High-res Image Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.51

Table S2457. Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZNF608 MUTATED	3	1	3	2	0	0
ZNF608 WILD-TYPE	30	18	56	37	16	45

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.39

Table S2458. Gene #246: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZNF608 MUTATED	3	0	3	2	1	0
ZNF608 WILD-TYPE	44	39	32	30	22	35

'SYNJ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.13

Table S2459. Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SYNJ2 MUTATED	1	14	1	1	0
SYNJ2 WILD-TYPE	78	112	26	42	12

Figure S1016. Get High-res Image Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SYNJ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.33

Table S2460. Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SYNJ2 MUTATED	2	8	2	2
SYNJ2 WILD-TYPE	69	68	32	61

'SYNJ2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.11

Table S2461. Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SYNJ2 MUTATED	2	7	3	0	3
SYNJ2 WILD-TYPE	14	55	48	65	52

Figure S1017. Get High-res Image Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SYNJ2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.1

Table S2462. Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SYNJ2 MUTATED	3	6	5	1
SYNJ2 WILD-TYPE	95	38	45	56

Figure S1018. Get High-res Image Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SYNJ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.076

Table S2463. Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SYNJ2 MUTATED	6	1	4	4	0
SYNJ2 WILD-TYPE	56	58	36	33	59

Figure S1019. Get High-res Image Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SYNJ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.2

Table S2464. Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SYNJ2 MUTATED	4	1	10
SYNJ2 WILD-TYPE	102	53	87

'SYNJ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00341 (Fisher's exact test), Q value = 0.036

Table S2465. Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SYNJ2 MUTATED	14	2	1
SYNJ2 WILD-TYPE	109	93	70

Figure S1020. Get High-res Image Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SYNJ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0641 (Fisher's exact test), Q value = 0.18

Table S2466. Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SYNJ2 MUTATED	14	2	1
SYNJ2 WILD-TYPE	143	61	68

'SYNJ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 0.23

Table S2467. Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SYNJ2 MUTATED	1	3	7	1	0	1
SYNJ2 WILD-TYPE	32	16	52	38	16	44

'SYNJ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.088

Table S2468. Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SYNJ2 MUTATED	6	1	5	0	1	0
SYNJ2 WILD-TYPE	41	38	30	32	22	35

Figure S1021. Get High-res Image Gene #247: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.21

Table S2469. Gene #248: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GATA3 MUTATED	1	12	2	1	0
GATA3 WILD-TYPE	78	114	25	42	12

'GATA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 0.21

Table S2470. Gene #248: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GATA3 MUTATED	2	6	4	1
GATA3 WILD-TYPE	69	70	30	62

'GATA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S2471. Gene #248: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GATA3 MUTATED	0	4	6	1	3
GATA3 WILD-TYPE	16	58	45	64	52

'GATA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 0.16

Table S2472. Gene #248: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GATA3 MUTATED	2	6	3	3
GATA3 WILD-TYPE	96	38	47	54

'GATA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 0.21

Table S2473. Gene #248: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GATA3 MUTATED	8	2	1	2	1
GATA3 WILD-TYPE	54	57	39	35	58

'GATA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0402 (Fisher's exact test), Q value = 0.14

Table S2474. Gene #248: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GATA3 MUTATED	3	1	10
GATA3 WILD-TYPE	103	53	87

Figure S1022. Get High-res Image Gene #248: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.28

Table S2475. Gene #248: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GATA3 MUTATED	10	5	1
GATA3 WILD-TYPE	113	90	70

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S2476. Gene #248: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GATA3 MUTATED	12	3	1
GATA3 WILD-TYPE	145	60	68

'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 0.94

Table S2477. Gene #248: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GATA3 MUTATED	2	1	3	4	0	3
GATA3 WILD-TYPE	31	18	56	35	16	42

'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.56

Table S2478. Gene #248: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GATA3 MUTATED	2	2	2	2	4	1
GATA3 WILD-TYPE	45	37	33	30	19	34

'NFE2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.61

Table S2479. Gene #249: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NFE2L1 MUTATED	1	7	0	1	0
NFE2L1 WILD-TYPE	78	119	27	42	12

'NFE2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.74

Table S2480. Gene #249: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NFE2L1 MUTATED	1	3	0	1
NFE2L1 WILD-TYPE	70	73	34	62

'NFE2L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.38

Table S2481. Gene #249: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NFE2L1 MUTATED	1	3	2	0	1
NFE2L1 WILD-TYPE	15	59	49	65	54

'NFE2L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.56

Table S2482. Gene #249: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NFE2L1 MUTATED	3	2	2	0
NFE2L1 WILD-TYPE	95	42	48	57

'NFE2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.28

Table S2483. Gene #249: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NFE2L1 MUTATED	4	0	3	1	1
NFE2L1 WILD-TYPE	58	59	37	36	58

'NFE2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.14

Table S2484. Gene #249: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NFE2L1 MUTATED	2	0	7
NFE2L1 WILD-TYPE	104	54	90

Figure S1023. Get High-res Image Gene #249: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S2485. Gene #249: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NFE2L1 MUTATED	7	1	1
NFE2L1 WILD-TYPE	116	94	70

'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.28

Table S2486. Gene #249: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NFE2L1 MUTATED	8	0	1
NFE2L1 WILD-TYPE	149	63	68

'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.48

Table S2487. Gene #249: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NFE2L1 MUTATED	0	1	1	2	0	0
NFE2L1 WILD-TYPE	33	18	58	37	16	45

'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.4

Table S2488. Gene #249: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NFE2L1 MUTATED	3	0	0	0	0	1
NFE2L1 WILD-TYPE	44	39	35	32	23	34

'SERPINB12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 0.87

Table S2489. Gene #250: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SERPINB12 MUTATED	2	4	1	0	0
SERPINB12 WILD-TYPE	77	122	26	43	12

'SERPINB12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.74

Table S2490. Gene #250: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SERPINB12 MUTATED	1	3	0	1
SERPINB12 WILD-TYPE	70	73	34	62

'SERPINB12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.51

Table S2491. Gene #250: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SERPINB12 MUTATED	1	1	1	0	1
SERPINB12 WILD-TYPE	15	61	50	65	54

'SERPINB12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.37

Table S2492. Gene #250: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SERPINB12 MUTATED	2	2	0	0
SERPINB12 WILD-TYPE	96	42	50	57

'SERPINB12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S2493. Gene #250: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SERPINB12 MUTATED	4	0	0	2	1
SERPINB12 WILD-TYPE	58	59	40	35	58

'SERPINB12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0474 (Fisher's exact test), Q value = 0.15

Table S2494. Gene #250: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SERPINB12 MUTATED	1	0	6
SERPINB12 WILD-TYPE	105	54	91

Figure S1024. Get High-res Image Gene #250: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0516 (Fisher's exact test), Q value = 0.16

Table S2495. Gene #250: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SERPINB12 MUTATED	6	0	1
SERPINB12 WILD-TYPE	117	95	70

'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.5

Table S2496. Gene #250: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SERPINB12 MUTATED	6	0	1
SERPINB12 WILD-TYPE	151	63	68

'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.64

Table S2497. Gene #250: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SERPINB12 MUTATED	1	1	1	2	0	0
SERPINB12 WILD-TYPE	32	18	58	37	16	45

'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.54

Table S2498. Gene #250: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SERPINB12 MUTATED	3	0	1	1	0	0
SERPINB12 WILD-TYPE	44	39	34	31	23	35

'GPR141 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.3

Table S2499. Gene #251: 'GPR141 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPR141 MUTATED	0	7	0	2	0
GPR141 WILD-TYPE	79	119	27	41	12

'GPR141 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.18

Table S2500. Gene #251: 'GPR141 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPR141 MUTATED	0	5	2	1
GPR141 WILD-TYPE	71	71	32	62

'GPR141 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.79

Table S2501. Gene #251: 'GPR141 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GPR141 MUTATED	0	3	3	1	2
GPR141 WILD-TYPE	16	59	48	64	53

'GPR141 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00085 (Fisher's exact test), Q value = 0.017

Table S2502. Gene #251: 'GPR141 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GPR141 MUTATED	0	6	1	2
GPR141 WILD-TYPE	98	38	49	55

Figure S1025. Get High-res Image Gene #251: 'GPR141 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR141 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0466 (Fisher's exact test), Q value = 0.15

Table S2503. Gene #251: 'GPR141 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GPR141 MUTATED	5	1	0	2	0
GPR141 WILD-TYPE	57	58	40	35	59

Figure S1026. Get High-res Image Gene #251: 'GPR141 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPR141 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 0.87

Table S2504. Gene #251: 'GPR141 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GPR141 MUTATED	3	1	4
GPR141 WILD-TYPE	103	53	93

'GPR141 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.099

Table S2505. Gene #251: 'GPR141 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GPR141 MUTATED	8	1	0
GPR141 WILD-TYPE	115	94	71

Figure S1027. Get High-res Image Gene #251: 'GPR141 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPR141 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S2506. Gene #251: 'GPR141 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GPR141 MUTATED	8	1	0
GPR141 WILD-TYPE	149	62	69

'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.7

Table S2507. Gene #251: 'GPR141 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GPR141 MUTATED	0	1	4	1	0	1
GPR141 WILD-TYPE	33	18	55	38	16	44

'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.6

Table S2508. Gene #251: 'GPR141 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GPR141 MUTATED	1	1	1	2	2	0
GPR141 WILD-TYPE	46	38	34	30	21	35

'ART1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.62

Table S2509. Gene #252: 'ART1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ART1 MUTATED	1	6	0	0	0
ART1 WILD-TYPE	78	120	27	43	12

'ART1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.56

Table S2510. Gene #252: 'ART1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ART1 MUTATED	1	3	1	0
ART1 WILD-TYPE	70	73	33	63

'ART1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 0.22

Table S2511. Gene #252: 'ART1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ART1 MUTATED	1	3	1	0	0
ART1 WILD-TYPE	15	59	50	65	55

'ART1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0758 (Fisher's exact test), Q value = 0.2

Table S2512. Gene #252: 'ART1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ART1 MUTATED	1	3	1	0
ART1 WILD-TYPE	97	41	49	57

'ART1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.2

Table S2513. Gene #252: 'ART1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ART1 MUTATED	3	0	0	3	1
ART1 WILD-TYPE	59	59	40	34	58

'ART1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0476 (Fisher's exact test), Q value = 0.15

Table S2514. Gene #252: 'ART1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ART1 MUTATED	1	0	6
ART1 WILD-TYPE	105	54	91

Figure S1028. Get High-res Image Gene #252: 'ART1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ART1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0531 (Fisher's exact test), Q value = 0.16

Table S2515. Gene #252: 'ART1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ART1 MUTATED	6	0	1
ART1 WILD-TYPE	117	95	70

'ART1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.5

Table S2516. Gene #252: 'ART1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ART1 MUTATED	6	0	1
ART1 WILD-TYPE	151	63	68

'ART1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.59

Table S2517. Gene #252: 'ART1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ART1 MUTATED	0	1	3	1	0	0
ART1 WILD-TYPE	33	18	56	38	16	45

'ART1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.41

Table S2518. Gene #252: 'ART1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ART1 MUTATED	3	0	1	0	1	0
ART1 WILD-TYPE	44	39	34	32	22	35

'DAO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.63

Table S2519. Gene #253: 'DAO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DAO MUTATED	2	7	0	1	1
DAO WILD-TYPE	77	119	27	42	11

'DAO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0852 (Fisher's exact test), Q value = 0.21

Table S2520. Gene #253: 'DAO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DAO MUTATED	1	7	1	1
DAO WILD-TYPE	70	69	33	62

'DAO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.4

Table S2521. Gene #253: 'DAO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DAO MUTATED	1	2	3	0	2
DAO WILD-TYPE	15	60	48	65	53

'DAO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.36

Table S2522. Gene #253: 'DAO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DAO MUTATED	3	3	2	0
DAO WILD-TYPE	95	41	48	57

'DAO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.57

Table S2523. Gene #253: 'DAO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DAO MUTATED	2	2	3	3	1
DAO WILD-TYPE	60	57	37	34	58

'DAO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.33

Table S2524. Gene #253: 'DAO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DAO MUTATED	2	2	7
DAO WILD-TYPE	104	52	90

'DAO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.85

Table S2525. Gene #253: 'DAO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DAO MUTATED	6	3	2
DAO WILD-TYPE	117	92	69

'DAO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.6

Table S2526. Gene #253: 'DAO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DAO MUTATED	8	2	1
DAO WILD-TYPE	149	61	68

'DAO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.39

Table S2527. Gene #253: 'DAO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DAO MUTATED	1	3	2	1	0	1
DAO WILD-TYPE	32	16	57	38	16	44

'DAO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.79

Table S2528. Gene #253: 'DAO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DAO MUTATED	3	1	1	2	1	0
DAO WILD-TYPE	44	38	34	30	22	35

'HIVEP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 0.91

Table S2529. Gene #254: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HIVEP3 MUTATED	6	15	2	3	1
HIVEP3 WILD-TYPE	73	111	25	40	11

'HIVEP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.092

Table S2530. Gene #254: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HIVEP3 MUTATED	3	12	6	3
HIVEP3 WILD-TYPE	68	64	28	60

Figure S1029. Get High-res Image Gene #254: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HIVEP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00714 (Fisher's exact test), Q value = 0.055

Table S2531. Gene #254: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HIVEP3 MUTATED	3	8	6	0	5
HIVEP3 WILD-TYPE	13	54	45	65	50

Figure S1030. Get High-res Image Gene #254: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HIVEP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0942 (Fisher's exact test), Q value = 0.23

Table S2532. Gene #254: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HIVEP3 MUTATED	8	8	4	2
HIVEP3 WILD-TYPE	90	36	46	55

'HIVEP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00778 (Fisher's exact test), Q value = 0.057

Table S2533. Gene #254: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HIVEP3 MUTATED	13	1	4	3	4
HIVEP3 WILD-TYPE	49	58	36	34	55

Figure S1031. Get High-res Image Gene #254: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HIVEP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.37

Table S2534. Gene #254: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HIVEP3 MUTATED	12	2	11
HIVEP3 WILD-TYPE	94	52	86

'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0019 (Fisher's exact test), Q value = 0.027

Table S2535. Gene #254: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HIVEP3 MUTATED	19	2	6
HIVEP3 WILD-TYPE	104	93	65

Figure S1032. Get High-res Image Gene #254: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.24

Table S2536. Gene #254: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HIVEP3 MUTATED	19	2	6
HIVEP3 WILD-TYPE	138	61	63

'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0831 (Fisher's exact test), Q value = 0.21

Table S2537. Gene #254: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HIVEP3 MUTATED	5	4	8	4	0	1
HIVEP3 WILD-TYPE	28	15	51	35	16	44

'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.32

Table S2538. Gene #254: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HIVEP3 MUTATED	9	1	5	3	2	2
HIVEP3 WILD-TYPE	38	38	30	29	21	33

'NEXN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.42

Table S2539. Gene #255: 'NEXN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NEXN MUTATED	1	7	0	0	0
NEXN WILD-TYPE	78	119	27	43	12

'NEXN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.31

Table S2540. Gene #255: 'NEXN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NEXN MUTATED	0	4	0	2
NEXN WILD-TYPE	71	72	34	61

'NEXN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.57

Table S2541. Gene #255: 'NEXN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NEXN MUTATED	0	3	1	0	2
NEXN WILD-TYPE	16	59	50	65	53

'NEXN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.47

Table S2542. Gene #255: 'NEXN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NEXN MUTATED	2	2	2	0
NEXN WILD-TYPE	96	42	48	57

'NEXN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.077

Table S2543. Gene #255: 'NEXN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NEXN MUTATED	5	0	1	0	0
NEXN WILD-TYPE	57	59	39	37	59

Figure S1033. Get High-res Image Gene #255: 'NEXN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NEXN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.41

Table S2544. Gene #255: 'NEXN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NEXN MUTATED	2	0	4
NEXN WILD-TYPE	104	54	93

'NEXN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0026 (Fisher's exact test), Q value = 0.032

Table S2545. Gene #255: 'NEXN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NEXN MUTATED	8	0	0
NEXN WILD-TYPE	115	95	71

Figure S1034. Get High-res Image Gene #255: 'NEXN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NEXN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.79

Table S2546. Gene #255: 'NEXN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NEXN MUTATED	6	1	1
NEXN WILD-TYPE	151	62	68

'NEXN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.72

Table S2547. Gene #255: 'NEXN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NEXN MUTATED	1	1	2	2	0	0
NEXN WILD-TYPE	32	18	57	37	16	45

'NEXN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.45

Table S2548. Gene #255: 'NEXN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NEXN MUTATED	1	0	1	3	0	1
NEXN WILD-TYPE	46	39	34	29	23	34

'VEZF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.44

Table S2549. Gene #256: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
VEZF1 MUTATED	0	5	0	0	0
VEZF1 WILD-TYPE	79	121	27	43	12

'VEZF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.49

Table S2550. Gene #256: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
VEZF1 MUTATED	0	1	0	2
VEZF1 WILD-TYPE	71	75	34	61

'VEZF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0515 (Fisher's exact test), Q value = 0.16

Table S2551. Gene #256: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
VEZF1 MUTATED	1	0	1	0	3
VEZF1 WILD-TYPE	15	62	50	65	52

'VEZF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0602 (Fisher's exact test), Q value = 0.18

Table S2552. Gene #256: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
VEZF1 MUTATED	2	3	0	0
VEZF1 WILD-TYPE	96	41	50	57

'VEZF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 0.86

Table S2553. Gene #256: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
VEZF1 MUTATED	1	1	1	1	0
VEZF1 WILD-TYPE	61	58	39	36	59

'VEZF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.65

Table S2554. Gene #256: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
VEZF1 MUTATED	3	0	1
VEZF1 WILD-TYPE	103	54	96

'VEZF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.46

Table S2555. Gene #256: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
VEZF1 MUTATED	4	1	0
VEZF1 WILD-TYPE	119	94	71

'VEZF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 0.8

Table S2556. Gene #256: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
VEZF1 MUTATED	4	0	1
VEZF1 WILD-TYPE	153	63	68

'VEZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 0.97

Table S2557. Gene #256: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
VEZF1 MUTATED	1	0	1	0	0	1
VEZF1 WILD-TYPE	32	19	58	39	16	44

'VEZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2558. Gene #256: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
VEZF1 MUTATED	1	1	1	0	0	0
VEZF1 WILD-TYPE	46	38	34	32	23	35

'CETN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.4

Table S2559. Gene #257: 'CETN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CETN3 MUTATED	0	6	0	1	0
CETN3 WILD-TYPE	79	120	27	42	12

'CETN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S2560. Gene #257: 'CETN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CETN3 MUTATED	0	4	0	1
CETN3 WILD-TYPE	71	72	34	62

'CETN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 0.81

Table S2561. Gene #257: 'CETN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CETN3 MUTATED	1	2	1	1	2
CETN3 WILD-TYPE	15	60	50	64	53

'CETN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0691 (Fisher's exact test), Q value = 0.19

Table S2562. Gene #257: 'CETN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CETN3 MUTATED	1	4	1	1
CETN3 WILD-TYPE	97	40	49	56

'CETN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.79

Table S2563. Gene #257: 'CETN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CETN3 MUTATED	2	1	1	1	0
CETN3 WILD-TYPE	60	58	39	36	59

'CETN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.65

Table S2564. Gene #257: 'CETN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CETN3 MUTATED	2	0	3
CETN3 WILD-TYPE	104	54	94

'CETN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.19

Table S2565. Gene #257: 'CETN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CETN3 MUTATED	6	1	0
CETN3 WILD-TYPE	117	94	71

'CETN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S2566. Gene #257: 'CETN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CETN3 MUTATED	6	1	0
CETN3 WILD-TYPE	151	62	69

'CETN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.29

Table S2567. Gene #257: 'CETN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CETN3 MUTATED	3	0	2	0	0	0
CETN3 WILD-TYPE	30	19	57	39	16	45

'CETN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.61

Table S2568. Gene #257: 'CETN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CETN3 MUTATED	2	0	2	1	0	0
CETN3 WILD-TYPE	45	39	33	31	23	35

'SGOL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0789 (Fisher's exact test), Q value = 0.2

Table S2569. Gene #258: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SGOL2 MUTATED	0	8	1	1	1
SGOL2 WILD-TYPE	79	118	26	42	11

'SGOL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.13

Table S2570. Gene #258: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SGOL2 MUTATED	1	6	2	0
SGOL2 WILD-TYPE	70	70	32	63

Figure S1035. Get High-res Image Gene #258: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SGOL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.25

Table S2571. Gene #258: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SGOL2 MUTATED	0	3	3	0	5
SGOL2 WILD-TYPE	16	59	48	65	50

'SGOL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0904 (Fisher's exact test), Q value = 0.22

Table S2572. Gene #258: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SGOL2 MUTATED	2	4	4	1
SGOL2 WILD-TYPE	96	40	46	56

'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.1

Table S2573. Gene #258: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SGOL2 MUTATED	6	1	2	0	0
SGOL2 WILD-TYPE	56	58	38	37	59

Figure S1036. Get High-res Image Gene #258: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.42

Table S2574. Gene #258: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SGOL2 MUTATED	2	1	6
SGOL2 WILD-TYPE	104	53	91

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.31

Table S2575. Gene #258: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SGOL2 MUTATED	8	2	1
SGOL2 WILD-TYPE	115	93	70

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.43

Table S2576. Gene #258: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SGOL2 MUTATED	9	1	1
SGOL2 WILD-TYPE	148	62	68

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.5

Table S2577. Gene #258: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SGOL2 MUTATED	1	1	5	0	0	1
SGOL2 WILD-TYPE	32	18	54	39	16	44

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0683 (Fisher's exact test), Q value = 0.19

Table S2578. Gene #258: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SGOL2 MUTATED	1	0	4	2	1	0
SGOL2 WILD-TYPE	46	39	31	30	22	35

'CASD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0586 (Fisher's exact test), Q value = 0.17

Table S2579. Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CASD1 MUTATED	1	7	1	0	2
CASD1 WILD-TYPE	78	119	26	43	10

'CASD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00132 (Fisher's exact test), Q value = 0.021

Table S2580. Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CASD1 MUTATED	0	7	0	0
CASD1 WILD-TYPE	71	69	34	63

Figure S1037. Get High-res Image Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CASD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S2581. Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CASD1 MUTATED	0	4	3	0	3
CASD1 WILD-TYPE	16	58	48	65	52

'CASD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00246 (Fisher's exact test), Q value = 0.031

Table S2582. Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CASD1 MUTATED	1	5	4	0
CASD1 WILD-TYPE	97	39	46	57

Figure S1038. Get High-res Image Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CASD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00535 (Fisher's exact test), Q value = 0.047

Table S2583. Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CASD1 MUTATED	7	0	0	2	1
CASD1 WILD-TYPE	55	59	40	35	58

Figure S1039. Get High-res Image Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CASD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0684 (Fisher's exact test), Q value = 0.19

Table S2584. Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CASD1 MUTATED	3	0	7
CASD1 WILD-TYPE	103	54	90

'CASD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.1

Table S2585. Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CASD1 MUTATED	8	0	3
CASD1 WILD-TYPE	115	95	68

Figure S1040. Get High-res Image Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CASD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 0.15

Table S2586. Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CASD1 MUTATED	10	0	1
CASD1 WILD-TYPE	147	63	68

Figure S1041. Get High-res Image Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.31

Table S2587. Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CASD1 MUTATED	0	2	3	1	0	0
CASD1 WILD-TYPE	33	17	56	38	16	45

'CASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0744 (Fisher's exact test), Q value = 0.2

Table S2588. Gene #259: 'CASD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CASD1 MUTATED	4	0	2	0	0	0
CASD1 WILD-TYPE	43	39	33	32	23	35

'FAM116A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.24

Table S2589. Gene #260: 'FAM116A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM116A MUTATED	0	5	0	0	1
FAM116A WILD-TYPE	79	121	27	43	11

'FAM116A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.52

Table S2590. Gene #260: 'FAM116A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM116A MUTATED	1	3	0	0
FAM116A WILD-TYPE	70	73	34	63

'FAM116A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.66

Table S2591. Gene #260: 'FAM116A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FAM116A MUTATED	0	2	2	0	2
FAM116A WILD-TYPE	16	60	49	65	53

'FAM116A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0197 (Fisher's exact test), Q value = 0.095

Table S2592. Gene #260: 'FAM116A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FAM116A MUTATED	2	4	0	0
FAM116A WILD-TYPE	96	40	50	57

Figure S1042. Get High-res Image Gene #260: 'FAM116A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM116A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.64

Table S2593. Gene #260: 'FAM116A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FAM116A MUTATED	3	1	1	1	0
FAM116A WILD-TYPE	59	58	39	36	59

'FAM116A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0348 (Fisher's exact test), Q value = 0.13

Table S2594. Gene #260: 'FAM116A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FAM116A MUTATED	0	1	5
FAM116A WILD-TYPE	106	53	92

Figure S1043. Get High-res Image Gene #260: 'FAM116A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM116A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.29

Table S2595. Gene #260: 'FAM116A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FAM116A MUTATED	5	1	0
FAM116A WILD-TYPE	118	94	71

'FAM116A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.5

Table S2596. Gene #260: 'FAM116A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FAM116A MUTATED	5	1	0
FAM116A WILD-TYPE	152	62	69

'FAM116A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.29

Table S2597. Gene #260: 'FAM116A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FAM116A MUTATED	2	1	0	0	0	1
FAM116A WILD-TYPE	31	18	59	39	16	44

'FAM116A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 0.86

Table S2598. Gene #260: 'FAM116A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FAM116A MUTATED	2	1	0	1	0	0
FAM116A WILD-TYPE	45	38	35	31	23	35

'TCHP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.38

Table S2599. Gene #261: 'TCHP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TCHP MUTATED	1	8	1	0	0
TCHP WILD-TYPE	78	118	26	43	12

'TCHP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.72

Table S2600. Gene #261: 'TCHP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TCHP MUTATED	2	2	2	1
TCHP WILD-TYPE	69	74	32	62

'TCHP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 0.23

Table S2601. Gene #261: 'TCHP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TCHP MUTATED	1	5	1	0	2
TCHP WILD-TYPE	15	57	50	65	53

'TCHP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 0.099

Table S2602. Gene #261: 'TCHP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TCHP MUTATED	1	5	2	1
TCHP WILD-TYPE	97	39	48	56

Figure S1044. Get High-res Image Gene #261: 'TCHP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TCHP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 0.19

Table S2603. Gene #261: 'TCHP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TCHP MUTATED	5	0	0	2	2
TCHP WILD-TYPE	57	59	40	35	57

'TCHP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.48

Table S2604. Gene #261: 'TCHP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TCHP MUTATED	5	0	4
TCHP WILD-TYPE	101	54	93

'TCHP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.089

Table S2605. Gene #261: 'TCHP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TCHP MUTATED	8	0	2
TCHP WILD-TYPE	115	95	69

Figure S1045. Get High-res Image Gene #261: 'TCHP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TCHP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.49

Table S2606. Gene #261: 'TCHP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TCHP MUTATED	8	1	1
TCHP WILD-TYPE	149	62	68

'TCHP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.64

Table S2607. Gene #261: 'TCHP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TCHP MUTATED	1	1	2	2	1	0
TCHP WILD-TYPE	32	18	57	37	15	45

'TCHP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.47

Table S2608. Gene #261: 'TCHP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TCHP MUTATED	2	0	2	0	2	1
TCHP WILD-TYPE	45	39	33	32	21	34

'IPO11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.43

Table S2609. Gene #262: 'IPO11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IPO11 MUTATED	1	7	0	2	1
IPO11 WILD-TYPE	78	119	27	41	11

'IPO11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.12

Table S2610. Gene #262: 'IPO11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IPO11 MUTATED	0	6	2	1
IPO11 WILD-TYPE	71	70	32	62

Figure S1046. Get High-res Image Gene #262: 'IPO11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IPO11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.086 (Fisher's exact test), Q value = 0.21

Table S2611. Gene #262: 'IPO11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IPO11 MUTATED	0	7	2	1	1
IPO11 WILD-TYPE	16	55	49	64	54

'IPO11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.025 (Fisher's exact test), Q value = 0.11

Table S2612. Gene #262: 'IPO11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IPO11 MUTATED	3	6	1	1
IPO11 WILD-TYPE	95	38	49	56

Figure S1047. Get High-res Image Gene #262: 'IPO11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IPO11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S2613. Gene #262: 'IPO11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IPO11 MUTATED	6	2	0	2	1
IPO11 WILD-TYPE	56	57	40	35	58

'IPO11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.61

Table S2614. Gene #262: 'IPO11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IPO11 MUTATED	4	1	6
IPO11 WILD-TYPE	102	53	91

'IPO11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 0.23

Table S2615. Gene #262: 'IPO11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IPO11 MUTATED	9	2	1
IPO11 WILD-TYPE	114	93	70

'IPO11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.32

Table S2616. Gene #262: 'IPO11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IPO11 MUTATED	10	1	1
IPO11 WILD-TYPE	147	62	68

'IPO11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.73

Table S2617. Gene #262: 'IPO11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IPO11 MUTATED	1	0	5	1	0	1
IPO11 WILD-TYPE	32	19	54	38	16	44

'IPO11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S2618. Gene #262: 'IPO11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IPO11 MUTATED	4	1	2	0	0	1
IPO11 WILD-TYPE	43	38	33	32	23	34

'CLDN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.24

Table S2619. Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CLDN6 MUTATED	0	7	0	0	0
CLDN6 WILD-TYPE	79	119	27	43	12

'CLDN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00369 (Fisher's exact test), Q value = 0.038

Table S2620. Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CLDN6 MUTATED	0	6	0	0
CLDN6 WILD-TYPE	71	70	34	63

Figure S1048. Get High-res Image Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CLDN6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S2621. Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CLDN6 MUTATED	0	1	2	0	3
CLDN6 WILD-TYPE	16	61	49	65	52

'CLDN6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0241 (Fisher's exact test), Q value = 0.1

Table S2622. Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CLDN6 MUTATED	1	4	0	1
CLDN6 WILD-TYPE	97	40	50	56

Figure S1049. Get High-res Image Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CLDN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.35

Table S2623. Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CLDN6 MUTATED	3	1	0	2	0
CLDN6 WILD-TYPE	59	58	40	35	59

'CLDN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0355 (Fisher's exact test), Q value = 0.13

Table S2624. Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CLDN6 MUTATED	0	1	5
CLDN6 WILD-TYPE	106	53	92

Figure S1050. Get High-res Image Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CLDN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0535 (Fisher's exact test), Q value = 0.16

Table S2625. Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CLDN6 MUTATED	6	0	1
CLDN6 WILD-TYPE	117	95	70

'CLDN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.49

Table S2626. Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CLDN6 MUTATED	6	0	1
CLDN6 WILD-TYPE	151	63	68

'CLDN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.07

Table S2627. Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CLDN6 MUTATED	4	1	0	1	0	0
CLDN6 WILD-TYPE	29	18	59	38	16	45

Figure S1051. Get High-res Image Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CLDN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0499 (Fisher's exact test), Q value = 0.16

Table S2628. Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CLDN6 MUTATED	3	0	0	3	0	0
CLDN6 WILD-TYPE	44	39	35	29	23	35

Figure S1052. Get High-res Image Gene #263: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SOX7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.17

Table S2629. Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SOX7 MUTATED	0	8	2	1	1
SOX7 WILD-TYPE	79	118	25	42	11

'SOX7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 0.19

Table S2630. Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SOX7 MUTATED	0	6	1	2
SOX7 WILD-TYPE	71	70	33	61

'SOX7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00354 (Fisher's exact test), Q value = 0.037

Table S2631. Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SOX7 MUTATED	3	5	1	0	1
SOX7 WILD-TYPE	13	57	50	65	54

Figure S1053. Get High-res Image Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SOX7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.32

Table S2632. Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SOX7 MUTATED	4	2	4	0
SOX7 WILD-TYPE	94	42	46	57

'SOX7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.14

Table S2633. Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SOX7 MUTATED	5	1	2	4	0
SOX7 WILD-TYPE	57	58	38	33	59

Figure S1054. Get High-res Image Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SOX7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.27

Table S2634. Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SOX7 MUTATED	3	1	8
SOX7 WILD-TYPE	103	53	89

'SOX7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0053

Table S2635. Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SOX7 MUTATED	12	0	0
SOX7 WILD-TYPE	111	95	71

Figure S1055. Get High-res Image Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SOX7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00326 (Fisher's exact test), Q value = 0.035

Table S2636. Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SOX7 MUTATED	12	0	0
SOX7 WILD-TYPE	145	63	69

Figure S1056. Get High-res Image Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SOX7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00689 (Fisher's exact test), Q value = 0.054

Table S2637. Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SOX7 MUTATED	0	4	4	1	0	0
SOX7 WILD-TYPE	33	15	55	38	16	45

Figure S1057. Get High-res Image Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SOX7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.78

Table S2638. Gene #264: 'SOX7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SOX7 MUTATED	3	1	2	2	1	0
SOX7 WILD-TYPE	44	38	33	30	22	35

'C20ORF160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.34

Table S2639. Gene #265: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C20ORF160 MUTATED	0	7	0	1	0
C20ORF160 WILD-TYPE	79	119	27	42	12

'C20ORF160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.52

Table S2640. Gene #265: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C20ORF160 MUTATED	1	4	2	1
C20ORF160 WILD-TYPE	70	72	32	62

'C20ORF160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.57

Table S2641. Gene #265: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C20ORF160 MUTATED	0	3	1	0	2
C20ORF160 WILD-TYPE	16	59	50	65	53

'C20ORF160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.54

Table S2642. Gene #265: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C20ORF160 MUTATED	1	2	2	1
C20ORF160 WILD-TYPE	97	42	48	56

'C20ORF160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.12

Table S2643. Gene #265: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C20ORF160 MUTATED	5	0	0	0	1
C20ORF160 WILD-TYPE	57	59	40	37	58

Figure S1058. Get High-res Image Gene #265: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C20ORF160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S2644. Gene #265: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C20ORF160 MUTATED	1	0	5
C20ORF160 WILD-TYPE	105	54	92

'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.1

Table S2645. Gene #265: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C20ORF160 MUTATED	7	0	1
C20ORF160 WILD-TYPE	116	95	70

Figure S1059. Get High-res Image Gene #265: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.36

Table S2646. Gene #265: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C20ORF160 MUTATED	7	0	1
C20ORF160 WILD-TYPE	150	63	68

'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.47

Table S2647. Gene #265: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C20ORF160 MUTATED	0	1	3	2	1	0
C20ORF160 WILD-TYPE	33	18	56	37	15	45

'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.47

Table S2648. Gene #265: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C20ORF160 MUTATED	2	0	3	0	1	1
C20ORF160 WILD-TYPE	45	39	32	32	22	34

'ZNF23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.72

Table S2649. Gene #266: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZNF23 MUTATED	2	1	0	0	0
ZNF23 WILD-TYPE	60	58	40	37	59

'ZNF23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.47

Table S2650. Gene #266: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZNF23 MUTATED	0	1	2
ZNF23 WILD-TYPE	106	53	95

'ZNF23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S2651. Gene #266: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZNF23 MUTATED	2	1	0
ZNF23 WILD-TYPE	121	94	71

'ZNF23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S2652. Gene #266: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZNF23 MUTATED	2	1	0
ZNF23 WILD-TYPE	155	62	69

'EFHA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.28

Table S2653. Gene #267: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EFHA1 MUTATED	0	6	1	1	1
EFHA1 WILD-TYPE	79	120	26	42	11

'EFHA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.18

Table S2654. Gene #267: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EFHA1 MUTATED	0	5	2	1
EFHA1 WILD-TYPE	71	71	32	62

'EFHA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.14

Table S2655. Gene #267: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EFHA1 MUTATED	1	4	1	0	0
EFHA1 WILD-TYPE	15	58	50	65	55

Figure S1060. Get High-res Image Gene #267: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EFHA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.47

Table S2656. Gene #267: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EFHA1 MUTATED	2	2	2	0
EFHA1 WILD-TYPE	96	42	48	57

'EFHA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00267 (Fisher's exact test), Q value = 0.032

Table S2657. Gene #267: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EFHA1 MUTATED	6	0	0	1	0
EFHA1 WILD-TYPE	56	59	40	36	59

Figure S1061. Get High-res Image Gene #267: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EFHA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0478 (Fisher's exact test), Q value = 0.15

Table S2658. Gene #267: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EFHA1 MUTATED	1	0	6
EFHA1 WILD-TYPE	105	54	91

Figure S1062. Get High-res Image Gene #267: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EFHA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.098

Table S2659. Gene #267: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EFHA1 MUTATED	8	1	0
EFHA1 WILD-TYPE	115	94	71

Figure S1063. Get High-res Image Gene #267: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EFHA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.26

Table S2660. Gene #267: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EFHA1 MUTATED	8	1	0
EFHA1 WILD-TYPE	149	62	69

'EFHA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.29

Table S2661. Gene #267: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EFHA1 MUTATED	0	3	2	2	0	1
EFHA1 WILD-TYPE	33	16	57	37	16	44

'EFHA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.36

Table S2662. Gene #267: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EFHA1 MUTATED	5	1	1	1	0	0
EFHA1 WILD-TYPE	42	38	34	31	23	35

'PAPD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.068

Table S2663. Gene #268: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PAPD4 MUTATED	0	4	2	0	2
PAPD4 WILD-TYPE	79	122	25	43	10

Figure S1064. Get High-res Image Gene #268: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAPD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S2664. Gene #268: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PAPD4 MUTATED	1	5	1	0
PAPD4 WILD-TYPE	70	71	33	63

'PAPD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.4

Table S2665. Gene #268: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PAPD4 MUTATED	1	2	3	0	2
PAPD4 WILD-TYPE	15	60	48	65	53

'PAPD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0554 (Fisher's exact test), Q value = 0.17

Table S2666. Gene #268: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PAPD4 MUTATED	2	4	2	0
PAPD4 WILD-TYPE	96	40	48	57

'PAPD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.19

Table S2667. Gene #268: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PAPD4 MUTATED	4	0	2	1	0
PAPD4 WILD-TYPE	58	59	38	36	59

'PAPD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.083

Table S2668. Gene #268: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PAPD4 MUTATED	0	1	6
PAPD4 WILD-TYPE	106	53	91

Figure S1065. Get High-res Image Gene #268: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PAPD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.75

Table S2669. Gene #268: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PAPD4 MUTATED	5	2	1
PAPD4 WILD-TYPE	118	93	70

'PAPD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S2670. Gene #268: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PAPD4 MUTATED	7	1	0
PAPD4 WILD-TYPE	150	62	69

'PAPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 0.9

Table S2671. Gene #268: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PAPD4 MUTATED	1	1	1	2	0	1
PAPD4 WILD-TYPE	32	18	58	37	16	44

'PAPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.69

Table S2672. Gene #268: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PAPD4 MUTATED	1	1	1	1	2	0
PAPD4 WILD-TYPE	46	38	34	31	21	35

'VPRBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.12

Table S2673. Gene #269: 'VPRBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
VPRBP MUTATED	0	8	0	0	1
VPRBP WILD-TYPE	79	118	27	43	11

Figure S1066. Get High-res Image Gene #269: 'VPRBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VPRBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.6

Table S2674. Gene #269: 'VPRBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
VPRBP MUTATED	0	2	1	2
VPRBP WILD-TYPE	71	74	33	61

'VPRBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.32

Table S2675. Gene #269: 'VPRBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
VPRBP MUTATED	1	3	0	1	4
VPRBP WILD-TYPE	15	59	51	64	51

'VPRBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 0.13

Table S2676. Gene #269: 'VPRBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
VPRBP MUTATED	3	5	0	1
VPRBP WILD-TYPE	95	39	50	56

Figure S1067. Get High-res Image Gene #269: 'VPRBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'VPRBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00521 (Fisher's exact test), Q value = 0.046

Table S2677. Gene #269: 'VPRBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
VPRBP MUTATED	7	1	1	0	0
VPRBP WILD-TYPE	55	58	39	37	59

Figure S1068. Get High-res Image Gene #269: 'VPRBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'VPRBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.42

Table S2678. Gene #269: 'VPRBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
VPRBP MUTATED	2	1	6
VPRBP WILD-TYPE	104	53	91

'VPRBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.3

Table S2679. Gene #269: 'VPRBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
VPRBP MUTATED	7	1	1
VPRBP WILD-TYPE	116	94	70

'VPRBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.6

Table S2680. Gene #269: 'VPRBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
VPRBP MUTATED	7	1	1
VPRBP WILD-TYPE	150	62	68

'VPRBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2681. Gene #269: 'VPRBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
VPRBP MUTATED	1	0	2	1	0	1
VPRBP WILD-TYPE	32	19	57	38	16	44

'VPRBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.31

Table S2682. Gene #269: 'VPRBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
VPRBP MUTATED	1	0	3	1	0	0
VPRBP WILD-TYPE	46	39	32	31	23	35

'PLA2G1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.71

Table S2683. Gene #270: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLA2G1B MUTATED	0	3	0	1	0
PLA2G1B WILD-TYPE	79	123	27	42	12

'PLA2G1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S2684. Gene #270: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLA2G1B MUTATED	0	1	0	3
PLA2G1B WILD-TYPE	71	75	34	60

'PLA2G1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.79

Table S2685. Gene #270: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PLA2G1B MUTATED	0	0	1	2	1
PLA2G1B WILD-TYPE	16	62	50	63	54

'PLA2G1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S2686. Gene #270: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PLA2G1B MUTATED	0	1	2	1
PLA2G1B WILD-TYPE	98	43	48	56

'PLA2G1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 0.95

Table S2687. Gene #270: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PLA2G1B MUTATED	2	1	0	0	1
PLA2G1B WILD-TYPE	60	58	40	37	58

'PLA2G1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 0.89

Table S2688. Gene #270: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PLA2G1B MUTATED	1	1	2
PLA2G1B WILD-TYPE	105	53	95

'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 0.88

Table S2689. Gene #270: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PLA2G1B MUTATED	1	2	1
PLA2G1B WILD-TYPE	122	93	70

'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 0.87

Table S2690. Gene #270: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PLA2G1B MUTATED	3	0	1
PLA2G1B WILD-TYPE	154	63	68

'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00992 (Fisher's exact test), Q value = 0.066

Table S2691. Gene #270: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PLA2G1B MUTATED	0	0	0	1	2	0
PLA2G1B WILD-TYPE	33	19	59	38	14	45

Figure S1069. Get High-res Image Gene #270: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.57

Table S2692. Gene #270: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PLA2G1B MUTATED	0	1	0	0	1	1
PLA2G1B WILD-TYPE	47	38	35	32	22	34

'BTBD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.33

Table S2693. Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BTBD11 MUTATED	3	14	1	1	1
BTBD11 WILD-TYPE	76	112	26	42	11

'BTBD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00068 (Fisher's exact test), Q value = 0.014

Table S2694. Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BTBD11 MUTATED	0	8	5	1
BTBD11 WILD-TYPE	71	68	29	62

Figure S1070. Get High-res Image Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BTBD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.37

Table S2695. Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BTBD11 MUTATED	2	7	4	2	2
BTBD11 WILD-TYPE	14	55	47	63	53

'BTBD11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.64

Table S2696. Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BTBD11 MUTATED	5	5	4	3
BTBD11 WILD-TYPE	93	39	46	54

'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.095

Table S2697. Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BTBD11 MUTATED	10	1	2	4	2
BTBD11 WILD-TYPE	52	58	38	33	57

Figure S1071. Get High-res Image Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0744 (Fisher's exact test), Q value = 0.2

Table S2698. Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BTBD11 MUTATED	5	2	12
BTBD11 WILD-TYPE	101	52	85

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00242 (Fisher's exact test), Q value = 0.031

Table S2699. Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BTBD11 MUTATED	16	2	2
BTBD11 WILD-TYPE	107	93	69

Figure S1072. Get High-res Image Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00038 (Fisher's exact test), Q value = 0.01

Table S2700. Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BTBD11 MUTATED	19	0	1
BTBD11 WILD-TYPE	138	63	68

Figure S1073. Get High-res Image Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.013

Table S2701. Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BTBD11 MUTATED	0	6	4	3	1	0
BTBD11 WILD-TYPE	33	13	55	36	15	45

Figure S1074. Get High-res Image Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0368 (Fisher's exact test), Q value = 0.13

Table S2702. Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BTBD11 MUTATED	5	0	4	4	1	0
BTBD11 WILD-TYPE	42	39	31	28	22	35

Figure S1075. Get High-res Image Gene #271: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRAM1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S2703. Gene #272: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TRAM1L1 MUTATED	1	8	2	1	1
TRAM1L1 WILD-TYPE	78	118	25	42	11

'TRAM1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00112 (Fisher's exact test), Q value = 0.019

Table S2704. Gene #272: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TRAM1L1 MUTATED	0	8	2	0
TRAM1L1 WILD-TYPE	71	68	32	63

Figure S1076. Get High-res Image Gene #272: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRAM1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 0.9

Table S2705. Gene #272: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TRAM1L1 MUTATED	0	3	4	3	2
TRAM1L1 WILD-TYPE	16	59	47	62	53

'TRAM1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S2706. Gene #272: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TRAM1L1 MUTATED	3	5	2	2
TRAM1L1 WILD-TYPE	95	39	48	55

'TRAM1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.76

Table S2707. Gene #272: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TRAM1L1 MUTATED	3	3	2	3	1
TRAM1L1 WILD-TYPE	59	56	38	34	58

'TRAM1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.33

Table S2708. Gene #272: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TRAM1L1 MUTATED	2	3	7
TRAM1L1 WILD-TYPE	104	51	90

'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.57

Table S2709. Gene #272: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TRAM1L1 MUTATED	8	3	2
TRAM1L1 WILD-TYPE	115	92	69

'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.38

Table S2710. Gene #272: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TRAM1L1 MUTATED	10	2	1
TRAM1L1 WILD-TYPE	147	61	68

'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 0.93

Table S2711. Gene #272: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TRAM1L1 MUTATED	1	1	4	2	1	1
TRAM1L1 WILD-TYPE	32	18	55	37	15	44

'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.7

Table S2712. Gene #272: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TRAM1L1 MUTATED	2	1	2	1	3	1
TRAM1L1 WILD-TYPE	45	38	33	31	20	34

'WNT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 0.81

Table S2713. Gene #273: 'WNT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WNT1 MUTATED	2	5	0	0	0
WNT1 WILD-TYPE	77	121	27	43	12

'WNT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S2714. Gene #273: 'WNT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WNT1 MUTATED	2	4	2	0
WNT1 WILD-TYPE	69	72	32	63

'WNT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.29

Table S2715. Gene #273: 'WNT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WNT1 MUTATED	1	1	3	0	1
WNT1 WILD-TYPE	15	61	48	65	54

'WNT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2716. Gene #273: 'WNT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WNT1 MUTATED	3	1	1	1
WNT1 WILD-TYPE	95	43	49	56

'WNT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 0.82

Table S2717. Gene #273: 'WNT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WNT1 MUTATED	3	1	1	2	1
WNT1 WILD-TYPE	59	58	39	35	58

'WNT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0192 (Fisher's exact test), Q value = 0.093

Table S2718. Gene #273: 'WNT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WNT1 MUTATED	0	2	6
WNT1 WILD-TYPE	106	52	91

Figure S1077. Get High-res Image Gene #273: 'WNT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WNT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.56

Table S2719. Gene #273: 'WNT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WNT1 MUTATED	5	1	2
WNT1 WILD-TYPE	118	94	69

'WNT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.52

Table S2720. Gene #273: 'WNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WNT1 MUTATED	6	0	2
WNT1 WILD-TYPE	151	63	67

'WNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.69

Table S2721. Gene #273: 'WNT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WNT1 MUTATED	1	1	3	2	0	0
WNT1 WILD-TYPE	32	18	56	37	16	45

'WNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.51

Table S2722. Gene #273: 'WNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WNT1 MUTATED	3	0	1	2	1	0
WNT1 WILD-TYPE	44	39	34	30	22	35

'SCLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.29

Table S2723. Gene #274: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SCLT1 MUTATED	1	10	0	3	0
SCLT1 WILD-TYPE	78	116	27	40	12

'SCLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.49

Table S2724. Gene #274: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SCLT1 MUTATED	2	5	0	1
SCLT1 WILD-TYPE	69	71	34	62

'SCLT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.44

Table S2725. Gene #274: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SCLT1 MUTATED	0	5	3	1	5
SCLT1 WILD-TYPE	16	57	48	64	50

'SCLT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.12

Table S2726. Gene #274: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SCLT1 MUTATED	3	7	2	2
SCLT1 WILD-TYPE	95	37	48	55

Figure S1078. Get High-res Image Gene #274: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.13

Table S2727. Gene #274: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SCLT1 MUTATED	5	1	4	1	0
SCLT1 WILD-TYPE	57	58	36	36	59

Figure S1079. Get High-res Image Gene #274: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.07

Table S2728. Gene #274: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SCLT1 MUTATED	2	0	9
SCLT1 WILD-TYPE	104	54	88

Figure S1080. Get High-res Image Gene #274: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.087

Table S2729. Gene #274: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SCLT1 MUTATED	11	1	2
SCLT1 WILD-TYPE	112	94	69

Figure S1081. Get High-res Image Gene #274: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.32

Table S2730. Gene #274: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SCLT1 MUTATED	11	2	1
SCLT1 WILD-TYPE	146	61	68

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.59

Table S2731. Gene #274: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SCLT1 MUTATED	0	1	2	2	0	0
SCLT1 WILD-TYPE	33	18	57	37	16	45

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.61

Table S2732. Gene #274: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SCLT1 MUTATED	2	0	2	1	0	0
SCLT1 WILD-TYPE	45	39	33	31	23	35

'USP15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.32

Table S2733. Gene #275: 'USP15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
USP15 MUTATED	0	6	0	0	0
USP15 WILD-TYPE	79	120	27	43	12

'USP15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.26

Table S2734. Gene #275: 'USP15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
USP15 MUTATED	0	1	2	2
USP15 WILD-TYPE	71	75	32	61

'USP15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00508 (Fisher's exact test), Q value = 0.045

Table S2735. Gene #275: 'USP15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
USP15 MUTATED	1	5	0	0	0
USP15 WILD-TYPE	15	57	51	65	55

Figure S1082. Get High-res Image Gene #275: 'USP15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'USP15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0722 (Fisher's exact test), Q value = 0.19

Table S2736. Gene #275: 'USP15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
USP15 MUTATED	1	3	2	0
USP15 WILD-TYPE	97	41	48	57

'USP15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.067

Table S2737. Gene #275: 'USP15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
USP15 MUTATED	5	0	0	1	0
USP15 WILD-TYPE	57	59	40	36	59

Figure S1083. Get High-res Image Gene #275: 'USP15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'USP15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.74

Table S2738. Gene #275: 'USP15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
USP15 MUTATED	3	0	3
USP15 WILD-TYPE	103	54	94

'USP15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.083

Table S2739. Gene #275: 'USP15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
USP15 MUTATED	6	0	0
USP15 WILD-TYPE	117	95	71

Figure S1084. Get High-res Image Gene #275: 'USP15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'USP15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.49

Table S2740. Gene #275: 'USP15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
USP15 MUTATED	5	1	0
USP15 WILD-TYPE	152	62	69

'USP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.57

Table S2741. Gene #275: 'USP15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
USP15 MUTATED	1	0	3	0	0	0
USP15 WILD-TYPE	32	19	56	39	16	45

'USP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0806 (Fisher's exact test), Q value = 0.21

Table S2742. Gene #275: 'USP15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
USP15 MUTATED	1	0	3	0	0	0
USP15 WILD-TYPE	46	39	32	32	23	35

'NCAPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.25

Table S2743. Gene #276: 'NCAPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NCAPH MUTATED	1	5	3	0	0
NCAPH WILD-TYPE	78	121	24	43	12

'NCAPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 0.94

Table S2744. Gene #276: 'NCAPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NCAPH MUTATED	1	2	1	2
NCAPH WILD-TYPE	70	74	33	61

'NCAPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.14

Table S2745. Gene #276: 'NCAPH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NCAPH MUTATED	3	3	1	1	1
NCAPH WILD-TYPE	13	59	50	64	54

Figure S1085. Get High-res Image Gene #276: 'NCAPH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NCAPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.72

Table S2746. Gene #276: 'NCAPH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NCAPH MUTATED	3	3	2	1
NCAPH WILD-TYPE	95	41	48	56

'NCAPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.54

Table S2747. Gene #276: 'NCAPH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NCAPH MUTATED	3	1	2	1	0
NCAPH WILD-TYPE	59	58	38	36	59

'NCAPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.56

Table S2748. Gene #276: 'NCAPH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NCAPH MUTATED	3	0	4
NCAPH WILD-TYPE	103	54	93

'NCAPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.15

Table S2749. Gene #276: 'NCAPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NCAPH MUTATED	8	2	0
NCAPH WILD-TYPE	115	93	71

Figure S1086. Get High-res Image Gene #276: 'NCAPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NCAPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.72

Table S2750. Gene #276: 'NCAPH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NCAPH MUTATED	7	2	1
NCAPH WILD-TYPE	150	61	68

'NCAPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.7

Table S2751. Gene #276: 'NCAPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NCAPH MUTATED	2	0	3	0	0	1
NCAPH WILD-TYPE	31	19	56	39	16	44

'NCAPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.43

Table S2752. Gene #276: 'NCAPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NCAPH MUTATED	2	1	3	0	0	0
NCAPH WILD-TYPE	45	38	32	32	23	35

'CCDC108 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00194 (Fisher's exact test), Q value = 0.027

Table S2753. Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CCDC108 MUTATED	1	20	1	2	0
CCDC108 WILD-TYPE	78	106	26	41	12

Figure S1087. Get High-res Image Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC108 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00147 (Fisher's exact test), Q value = 0.023

Table S2754. Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CCDC108 MUTATED	1	13	3	2
CCDC108 WILD-TYPE	70	63	31	61

Figure S1088. Get High-res Image Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC108 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.066

Table S2755. Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CCDC108 MUTATED	2	9	5	0	4
CCDC108 WILD-TYPE	14	53	46	65	51

Figure S1089. Get High-res Image Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CCDC108 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00042 (Fisher's exact test), Q value = 0.011

Table S2756. Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CCDC108 MUTATED	7	10	3	0
CCDC108 WILD-TYPE	91	34	47	57

Figure S1090. Get High-res Image Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC108 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S2757. Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CCDC108 MUTATED	16	0	3	4	0
CCDC108 WILD-TYPE	46	59	37	33	59

Figure S1091. Get High-res Image Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCDC108 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S2758. Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CCDC108 MUTATED	4	0	19
CCDC108 WILD-TYPE	102	54	78

Figure S1092. Get High-res Image Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0055

Table S2759. Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CCDC108 MUTATED	20	1	4
CCDC108 WILD-TYPE	103	94	67

Figure S1093. Get High-res Image Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0049

Table S2760. Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CCDC108 MUTATED	23	0	2
CCDC108 WILD-TYPE	134	63	67

Figure S1094. Get High-res Image Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00234 (Fisher's exact test), Q value = 0.03

Table S2761. Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CCDC108 MUTATED	4	2	3	9	0	0
CCDC108 WILD-TYPE	29	17	56	30	16	45

Figure S1095. Get High-res Image Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.15

Table S2762. Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CCDC108 MUTATED	9	0	3	2	2	2
CCDC108 WILD-TYPE	38	39	32	30	21	33

Figure S1096. Get High-res Image Gene #277: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FBXO48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.53

Table S2763. Gene #278: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FBXO48 MUTATED	0	2	1	0	0
FBXO48 WILD-TYPE	79	124	26	43	12

'FBXO48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S2764. Gene #278: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FBXO48 MUTATED	0	3	0	0
FBXO48 WILD-TYPE	71	73	34	63

'FBXO48 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.17

Table S2765. Gene #278: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FBXO48 MUTATED	1	2	0	0	0
FBXO48 WILD-TYPE	15	60	51	65	55

'FBXO48 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.7

Table S2766. Gene #278: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FBXO48 MUTATED	1	1	1	0
FBXO48 WILD-TYPE	97	43	49	57

'FBXO48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.49

Table S2767. Gene #278: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FBXO48 MUTATED	2	0	1	1	0
FBXO48 WILD-TYPE	60	59	39	36	59

'FBXO48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0486 (Fisher's exact test), Q value = 0.15

Table S2768. Gene #278: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FBXO48 MUTATED	0	0	4
FBXO48 WILD-TYPE	106	54	93

Figure S1097. Get High-res Image Gene #278: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FBXO48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0902 (Fisher's exact test), Q value = 0.22

Table S2769. Gene #278: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FBXO48 MUTATED	4	0	0
FBXO48 WILD-TYPE	119	95	71

'FBXO48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.56

Table S2770. Gene #278: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FBXO48 MUTATED	4	0	0
FBXO48 WILD-TYPE	153	63	69

'FBXO48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.75

Table S2771. Gene #278: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FBXO48 MUTATED	1	0	2	0	0	0
FBXO48 WILD-TYPE	32	19	57	39	16	45

'FBXO48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.71

Table S2772. Gene #278: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FBXO48 MUTATED	2	0	1	0	0	0
FBXO48 WILD-TYPE	45	39	34	32	23	35

'CROT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 0.19

Table S2773. Gene #279: 'CROT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CROT MUTATED	0	9	0	2	0
CROT WILD-TYPE	79	117	27	41	12

'CROT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.24

Table S2774. Gene #279: 'CROT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CROT MUTATED	0	5	2	2
CROT WILD-TYPE	71	71	32	61

'CROT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.36

Table S2775. Gene #279: 'CROT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CROT MUTATED	1	4	2	0	3
CROT WILD-TYPE	15	58	49	65	52

'CROT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00692 (Fisher's exact test), Q value = 0.054

Table S2776. Gene #279: 'CROT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CROT MUTATED	3	6	1	0
CROT WILD-TYPE	95	38	49	57

Figure S1098. Get High-res Image Gene #279: 'CROT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CROT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00321 (Fisher's exact test), Q value = 0.035

Table S2777. Gene #279: 'CROT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CROT MUTATED	7	0	1	2	0
CROT WILD-TYPE	55	59	39	35	59

Figure S1099. Get High-res Image Gene #279: 'CROT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CROT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.066 (Fisher's exact test), Q value = 0.19

Table S2778. Gene #279: 'CROT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CROT MUTATED	3	0	7
CROT WILD-TYPE	103	54	90

'CROT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.14

Table S2779. Gene #279: 'CROT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CROT MUTATED	9	1	1
CROT WILD-TYPE	114	94	70

Figure S1100. Get High-res Image Gene #279: 'CROT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CROT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0444 (Fisher's exact test), Q value = 0.15

Table S2780. Gene #279: 'CROT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CROT MUTATED	10	0	1
CROT WILD-TYPE	147	63	68

Figure S1101. Get High-res Image Gene #279: 'CROT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CROT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.52

Table S2781. Gene #279: 'CROT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CROT MUTATED	2	1	1	2	0	0
CROT WILD-TYPE	31	18	58	37	16	45

'CROT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.74

Table S2782. Gene #279: 'CROT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CROT MUTATED	3	0	1	1	0	1
CROT WILD-TYPE	44	39	34	31	23	34

'BRSK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.49

Table S2783. Gene #280: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BRSK1 MUTATED	1	8	0	2	0
BRSK1 WILD-TYPE	78	118	27	41	12

'BRSK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.45

Table S2784. Gene #280: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BRSK1 MUTATED	1	4	3	3
BRSK1 WILD-TYPE	70	72	31	60

'BRSK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.69

Table S2785. Gene #280: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BRSK1 MUTATED	0	4	3	1	3
BRSK1 WILD-TYPE	16	58	48	64	52

'BRSK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00445 (Fisher's exact test), Q value = 0.042

Table S2786. Gene #280: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BRSK1 MUTATED	2	6	3	0
BRSK1 WILD-TYPE	96	38	47	57

Figure S1102. Get High-res Image Gene #280: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BRSK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.46

Table S2787. Gene #280: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BRSK1 MUTATED	6	2	1	2	1
BRSK1 WILD-TYPE	56	57	39	35	58

'BRSK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 0.82

Table S2788. Gene #280: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BRSK1 MUTATED	4	2	6
BRSK1 WILD-TYPE	102	52	91

'BRSK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.067

Table S2789. Gene #280: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BRSK1 MUTATED	10	2	0
BRSK1 WILD-TYPE	113	93	71

Figure S1103. Get High-res Image Gene #280: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRSK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.25

Table S2790. Gene #280: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BRSK1 MUTATED	9	3	0
BRSK1 WILD-TYPE	148	60	69

'BRSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 0.86

Table S2791. Gene #280: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BRSK1 MUTATED	1	1	4	3	0	1
BRSK1 WILD-TYPE	32	18	55	36	16	44

'BRSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 0.55

Table S2792. Gene #280: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BRSK1 MUTATED	2	1	2	3	2	0
BRSK1 WILD-TYPE	45	38	33	29	21	35

'C1QA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.45

Table S2793. Gene #281: 'C1QA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C1QA MUTATED	0	5	0	0	0
C1QA WILD-TYPE	79	121	27	43	12

'C1QA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.49

Table S2794. Gene #281: 'C1QA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C1QA MUTATED	0	3	1	1
C1QA WILD-TYPE	71	73	33	62

'C1QA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 0.21

Table S2795. Gene #281: 'C1QA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C1QA MUTATED	0	3	0	0	0
C1QA WILD-TYPE	16	59	51	65	55

'C1QA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0645 (Fisher's exact test), Q value = 0.18

Table S2796. Gene #281: 'C1QA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C1QA MUTATED	0	1	2	0
C1QA WILD-TYPE	98	43	48	57

'C1QA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S2797. Gene #281: 'C1QA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C1QA MUTATED	3	0	0	1	0
C1QA WILD-TYPE	59	59	40	36	59

'C1QA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.57

Table S2798. Gene #281: 'C1QA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C1QA MUTATED	1	0	3
C1QA WILD-TYPE	105	54	94

'C1QA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.46

Table S2799. Gene #281: 'C1QA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C1QA MUTATED	4	1	0
C1QA WILD-TYPE	119	94	71

'C1QA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.47

Table S2800. Gene #281: 'C1QA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C1QA MUTATED	3	2	0
C1QA WILD-TYPE	154	61	69

'C1QA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S2801. Gene #281: 'C1QA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C1QA MUTATED	1	0	2	2	0	0
C1QA WILD-TYPE	32	19	57	37	16	45

'C1QA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.46

Table S2802. Gene #281: 'C1QA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C1QA MUTATED	2	0	2	0	1	0
C1QA WILD-TYPE	45	39	33	32	22	35

'PRMT8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0587 (Fisher's exact test), Q value = 0.17

Table S2803. Gene #282: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRMT8 MUTATED	0	8	0	0	0
PRMT8 WILD-TYPE	79	118	27	43	12

'PRMT8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 0.2

Table S2804. Gene #282: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRMT8 MUTATED	0	5	0	2
PRMT8 WILD-TYPE	71	71	34	61

'PRMT8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.38

Table S2805. Gene #282: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PRMT8 MUTATED	1	3	2	0	1
PRMT8 WILD-TYPE	15	59	49	65	54

'PRMT8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.29

Table S2806. Gene #282: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PRMT8 MUTATED	2	3	2	0
PRMT8 WILD-TYPE	96	41	48	57

'PRMT8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.17

Table S2807. Gene #282: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PRMT8 MUTATED	5	1	0	1	0
PRMT8 WILD-TYPE	57	58	40	36	59

'PRMT8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.57

Table S2808. Gene #282: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PRMT8 MUTATED	3	0	4
PRMT8 WILD-TYPE	103	54	93

'PRMT8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00283 (Fisher's exact test), Q value = 0.033

Table S2809. Gene #282: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PRMT8 MUTATED	8	0	0
PRMT8 WILD-TYPE	115	95	71

Figure S1104. Get High-res Image Gene #282: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRMT8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S2810. Gene #282: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PRMT8 MUTATED	7	1	0
PRMT8 WILD-TYPE	150	62	69

'PRMT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.29

Table S2811. Gene #282: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PRMT8 MUTATED	3	1	3	0	0	0
PRMT8 WILD-TYPE	30	18	56	39	16	45

'PRMT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0352 (Fisher's exact test), Q value = 0.13

Table S2812. Gene #282: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PRMT8 MUTATED	4	0	3	0	0	0
PRMT8 WILD-TYPE	43	39	32	32	23	35

Figure S1105. Get High-res Image Gene #282: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PLEKHO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.4

Table S2813. Gene #283: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLEKHO1 MUTATED	0	6	0	1	0
PLEKHO1 WILD-TYPE	79	120	27	42	12

'PLEKHO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.34

Table S2814. Gene #283: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLEKHO1 MUTATED	0	2	2	1
PLEKHO1 WILD-TYPE	71	74	32	62

'PLEKHO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.59

Table S2815. Gene #283: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PLEKHO1 MUTATED	0	3	2	0	2
PLEKHO1 WILD-TYPE	16	59	49	65	53

'PLEKHO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.069

Table S2816. Gene #283: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PLEKHO1 MUTATED	0	4	2	1
PLEKHO1 WILD-TYPE	98	40	48	56

Figure S1106. Get High-res Image Gene #283: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLEKHO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.42

Table S2817. Gene #283: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PLEKHO1 MUTATED	4	1	1	1	0
PLEKHO1 WILD-TYPE	58	58	39	36	59

'PLEKHO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.65

Table S2818. Gene #283: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PLEKHO1 MUTATED	4	0	3
PLEKHO1 WILD-TYPE	102	54	94

'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00761 (Fisher's exact test), Q value = 0.057

Table S2819. Gene #283: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PLEKHO1 MUTATED	7	0	0
PLEKHO1 WILD-TYPE	116	95	71

Figure S1107. Get High-res Image Gene #283: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.38

Table S2820. Gene #283: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PLEKHO1 MUTATED	6	1	0
PLEKHO1 WILD-TYPE	151	62	69

'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.57

Table S2821. Gene #283: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PLEKHO1 MUTATED	1	0	3	0	0	0
PLEKHO1 WILD-TYPE	32	19	56	39	16	45

'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 0.79

Table S2822. Gene #283: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PLEKHO1 MUTATED	1	0	1	1	1	0
PLEKHO1 WILD-TYPE	46	39	34	31	22	35

'EOMES MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.17

Table S2823. Gene #284: 'EOMES MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EOMES MUTATED	0	8	0	0	0
EOMES WILD-TYPE	79	118	27	43	12

'EOMES MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 0.15

Table S2824. Gene #284: 'EOMES MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EOMES MUTATED	0	3	2	0
EOMES WILD-TYPE	71	73	32	63

Figure S1108. Get High-res Image Gene #284: 'EOMES MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EOMES MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 0.83

Table S2825. Gene #284: 'EOMES MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EOMES MUTATED	0	2	1	1	3
EOMES WILD-TYPE	16	60	50	64	52

'EOMES MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 0.91

Table S2826. Gene #284: 'EOMES MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EOMES MUTATED	3	2	1	1
EOMES WILD-TYPE	95	42	49	56

'EOMES MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.43

Table S2827. Gene #284: 'EOMES MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EOMES MUTATED	3	3	1	0	0
EOMES WILD-TYPE	59	56	39	37	59

'EOMES MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.78

Table S2828. Gene #284: 'EOMES MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EOMES MUTATED	2	2	3
EOMES WILD-TYPE	104	52	94

'EOMES MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.87

Table S2829. Gene #284: 'EOMES MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EOMES MUTATED	4	3	1
EOMES WILD-TYPE	119	92	70

'EOMES MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.67

Table S2830. Gene #284: 'EOMES MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EOMES MUTATED	4	3	1
EOMES WILD-TYPE	153	60	68

'EOMES MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 0.97

Table S2831. Gene #284: 'EOMES MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EOMES MUTATED	1	0	1	2	0	1
EOMES WILD-TYPE	32	19	58	37	16	44

'EOMES MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 0.84

Table S2832. Gene #284: 'EOMES MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EOMES MUTATED	2	1	1	0	1	0
EOMES WILD-TYPE	45	38	34	32	22	35

'FYB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.37

Table S2833. Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FYB MUTATED	1	8	0	1	1
FYB WILD-TYPE	78	118	27	42	11

'FYB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.092

Table S2834. Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FYB MUTATED	1	7	1	0
FYB WILD-TYPE	70	69	33	63

Figure S1109. Get High-res Image Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FYB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S2835. Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FYB MUTATED	0	2	3	0	4
FYB WILD-TYPE	16	60	48	65	51

'FYB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0069

Table S2836. Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FYB MUTATED	1	7	1	0
FYB WILD-TYPE	97	37	49	57

Figure S1110. Get High-res Image Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FYB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.21

Table S2837. Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FYB MUTATED	7	1	1	1	1
FYB WILD-TYPE	55	58	39	36	58

'FYB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.069

Table S2838. Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FYB MUTATED	2	0	9
FYB WILD-TYPE	104	54	88

Figure S1111. Get High-res Image Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FYB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.11

Table S2839. Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FYB MUTATED	8	0	3
FYB WILD-TYPE	115	95	68

Figure S1112. Get High-res Image Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FYB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 0.15

Table S2840. Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FYB MUTATED	10	0	1
FYB WILD-TYPE	147	63	68

Figure S1113. Get High-res Image Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FYB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.58

Table S2841. Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FYB MUTATED	1	1	3	3	0	0
FYB WILD-TYPE	32	18	56	36	16	45

'FYB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.31

Table S2842. Gene #285: 'FYB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FYB MUTATED	4	0	2	2	0	0
FYB WILD-TYPE	43	39	33	30	23	35

'SDAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.4

Table S2843. Gene #286: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SDAD1 MUTATED	0	6	0	1	0
SDAD1 WILD-TYPE	79	120	27	42	12

'SDAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.17

Table S2844. Gene #286: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SDAD1 MUTATED	0	4	1	0
SDAD1 WILD-TYPE	71	72	33	63

'SDAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.5

Table S2845. Gene #286: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SDAD1 MUTATED	0	2	3	0	2
SDAD1 WILD-TYPE	16	60	48	65	53

'SDAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0199 (Fisher's exact test), Q value = 0.095

Table S2846. Gene #286: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SDAD1 MUTATED	1	4	2	0
SDAD1 WILD-TYPE	97	40	48	57

Figure S1114. Get High-res Image Gene #286: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SDAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.64

Table S2847. Gene #286: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SDAD1 MUTATED	3	1	1	1	0
SDAD1 WILD-TYPE	59	58	39	36	59

'SDAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0698 (Fisher's exact test), Q value = 0.19

Table S2848. Gene #286: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SDAD1 MUTATED	0	2	4
SDAD1 WILD-TYPE	106	52	93

'SDAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S2849. Gene #286: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SDAD1 MUTATED	5	2	0
SDAD1 WILD-TYPE	118	93	71

'SDAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.38

Table S2850. Gene #286: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SDAD1 MUTATED	6	1	0
SDAD1 WILD-TYPE	151	62	69

'SDAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.69

Table S2851. Gene #286: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SDAD1 MUTATED	0	0	1	2	0	0
SDAD1 WILD-TYPE	33	19	58	37	16	45

'SDAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 0.12

Table S2852. Gene #286: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SDAD1 MUTATED	0	0	1	0	2	0
SDAD1 WILD-TYPE	47	39	34	32	21	35

Figure S1115. Get High-res Image Gene #286: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IKBKE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 0.17

Table S2853. Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IKBKE MUTATED	0	10	1	1	0
IKBKE WILD-TYPE	79	116	26	42	12

'IKBKE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0901 (Fisher's exact test), Q value = 0.22

Table S2854. Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IKBKE MUTATED	2	7	0	1
IKBKE WILD-TYPE	69	69	34	62

'IKBKE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S2855. Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IKBKE MUTATED	0	1	4	1	5
IKBKE WILD-TYPE	16	61	47	64	50

'IKBKE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0258 (Fisher's exact test), Q value = 0.11

Table S2856. Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IKBKE MUTATED	3	6	1	1
IKBKE WILD-TYPE	95	38	49	56

Figure S1116. Get High-res Image Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IKBKE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00264 (Fisher's exact test), Q value = 0.032

Table S2857. Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IKBKE MUTATED	3	0	3	5	0
IKBKE WILD-TYPE	59	59	37	32	59

Figure S1117. Get High-res Image Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IKBKE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.069

Table S2858. Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IKBKE MUTATED	2	0	9
IKBKE WILD-TYPE	104	54	88

Figure S1118. Get High-res Image Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IKBKE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.068

Table S2859. Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IKBKE MUTATED	10	2	0
IKBKE WILD-TYPE	113	93	71

Figure S1119. Get High-res Image Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IKBKE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00308 (Fisher's exact test), Q value = 0.034

Table S2860. Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IKBKE MUTATED	12	0	0
IKBKE WILD-TYPE	145	63	69

Figure S1120. Get High-res Image Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IKBKE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.27

Table S2861. Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IKBKE MUTATED	2	3	3	2	0	0
IKBKE WILD-TYPE	31	16	56	37	16	45

'IKBKE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0706 (Fisher's exact test), Q value = 0.19

Table S2862. Gene #287: 'IKBKE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IKBKE MUTATED	4	0	3	3	0	0
IKBKE WILD-TYPE	43	39	32	29	23	35

'CADPS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 0.84

Table S2863. Gene #288: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CADPS2 MUTATED	2	5	2	1	0
CADPS2 WILD-TYPE	77	121	25	42	12

'CADPS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.2

Table S2864. Gene #288: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CADPS2 MUTATED	2	6	2	0
CADPS2 WILD-TYPE	69	70	32	63

'CADPS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S2865. Gene #288: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CADPS2 MUTATED	0	5	2	0	1
CADPS2 WILD-TYPE	16	57	49	65	54

'CADPS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00491 (Fisher's exact test), Q value = 0.044

Table S2866. Gene #288: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CADPS2 MUTATED	1	5	2	0
CADPS2 WILD-TYPE	97	39	48	57

Figure S1121. Get High-res Image Gene #288: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CADPS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.25

Table S2867. Gene #288: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CADPS2 MUTATED	5	0	1	2	1
CADPS2 WILD-TYPE	57	59	39	35	58

'CADPS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00679 (Fisher's exact test), Q value = 0.054

Table S2868. Gene #288: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CADPS2 MUTATED	1	0	8
CADPS2 WILD-TYPE	105	54	89

Figure S1122. Get High-res Image Gene #288: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CADPS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S2869. Gene #288: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CADPS2 MUTATED	8	1	2
CADPS2 WILD-TYPE	115	94	69

'CADPS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.7

Table S2870. Gene #288: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CADPS2 MUTATED	8	1	2
CADPS2 WILD-TYPE	149	62	67

'CADPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.7

Table S2871. Gene #288: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CADPS2 MUTATED	3	1	2	3	0	1
CADPS2 WILD-TYPE	30	18	57	36	16	44

'CADPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S2872. Gene #288: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CADPS2 MUTATED	6	1	1	1	1	0
CADPS2 WILD-TYPE	41	38	34	31	22	35

'IL2RG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.32

Table S2873. Gene #289: 'IL2RG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IL2RG MUTATED	0	6	0	0	0
IL2RG WILD-TYPE	79	120	27	43	12

'IL2RG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.077

Table S2874. Gene #289: 'IL2RG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IL2RG MUTATED	0	5	0	0
IL2RG WILD-TYPE	71	71	34	63

Figure S1123. Get High-res Image Gene #289: 'IL2RG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IL2RG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.52

Table S2875. Gene #289: 'IL2RG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IL2RG MUTATED	0	2	1	0	3
IL2RG WILD-TYPE	16	60	50	65	52

'IL2RG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.099

Table S2876. Gene #289: 'IL2RG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IL2RG MUTATED	1	4	1	0
IL2RG WILD-TYPE	97	40	49	57

Figure S1124. Get High-res Image Gene #289: 'IL2RG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IL2RG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S2877. Gene #289: 'IL2RG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IL2RG MUTATED	2	0	2	0	0
IL2RG WILD-TYPE	60	59	38	37	59

'IL2RG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.57

Table S2878. Gene #289: 'IL2RG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IL2RG MUTATED	1	0	3
IL2RG WILD-TYPE	105	54	94

'IL2RG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.29

Table S2879. Gene #289: 'IL2RG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IL2RG MUTATED	5	1	0
IL2RG WILD-TYPE	118	94	71

'IL2RG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.49

Table S2880. Gene #289: 'IL2RG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IL2RG MUTATED	5	1	0
IL2RG WILD-TYPE	152	62	69

'IL2RG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.79

Table S2881. Gene #289: 'IL2RG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IL2RG MUTATED	1	0	3	1	0	0
IL2RG WILD-TYPE	32	19	56	38	16	45

'IL2RG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.43

Table S2882. Gene #289: 'IL2RG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IL2RG MUTATED	1	0	2	2	0	0
IL2RG WILD-TYPE	46	39	33	30	23	35

'TBL1XR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.59

Table S2883. Gene #290: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TBL1XR1 MUTATED	0	3	1	1	0
TBL1XR1 WILD-TYPE	79	123	26	42	12

'TBL1XR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S2884. Gene #290: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TBL1XR1 MUTATED	0	2	1	0
TBL1XR1 WILD-TYPE	71	74	33	63

'TBL1XR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.34

Table S2885. Gene #290: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TBL1XR1 MUTATED	1	0	0	2	1
TBL1XR1 WILD-TYPE	15	62	51	63	54

'TBL1XR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.61

Table S2886. Gene #290: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TBL1XR1 MUTATED	1	1	0	2
TBL1XR1 WILD-TYPE	97	43	50	55

'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.78

Table S2887. Gene #290: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TBL1XR1 MUTATED	2	2	1	1	0
TBL1XR1 WILD-TYPE	60	57	39	36	59

'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.47

Table S2888. Gene #290: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TBL1XR1 MUTATED	1	1	4
TBL1XR1 WILD-TYPE	105	53	93

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S2889. Gene #290: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TBL1XR1 MUTATED	5	1	0
TBL1XR1 WILD-TYPE	118	94	71

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.5

Table S2890. Gene #290: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TBL1XR1 MUTATED	5	1	0
TBL1XR1 WILD-TYPE	152	62	69

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 0.88

Table S2891. Gene #290: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TBL1XR1 MUTATED	1	0	1	1	0	0
TBL1XR1 WILD-TYPE	32	19	58	38	16	45

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.71

Table S2892. Gene #290: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TBL1XR1 MUTATED	1	0	1	0	1	0
TBL1XR1 WILD-TYPE	46	39	34	32	22	35

'ASPN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.44

Table S2893. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ASPN MUTATED	0	5	0	0	0
ASPN WILD-TYPE	79	121	27	43	12

'ASPN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0962 (Fisher's exact test), Q value = 0.23

Table S2894. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ASPN MUTATED	0	3	1	0
ASPN WILD-TYPE	71	73	33	63

'ASPN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.61

Table S2895. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ASPN MUTATED	0	1	2	0	2
ASPN WILD-TYPE	16	61	49	65	53

'ASPN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0756 (Fisher's exact test), Q value = 0.2

Table S2896. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ASPN MUTATED	1	3	1	0
ASPN WILD-TYPE	97	41	49	57

'ASPN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S2897. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ASPN MUTATED	3	0	1	1	0
ASPN WILD-TYPE	59	59	39	36	59

'ASPN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.081

Table S2898. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ASPN MUTATED	0	0	5
ASPN WILD-TYPE	106	54	92

Figure S1125. Get High-res Image Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ASPN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.12

Table S2899. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ASPN MUTATED	5	0	0
ASPN WILD-TYPE	118	95	71

Figure S1126. Get High-res Image Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ASPN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S2900. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ASPN MUTATED	4	0	1
ASPN WILD-TYPE	153	63	68

'ASPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.38

Table S2901. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ASPN MUTATED	1	1	0	1	0	0
ASPN WILD-TYPE	32	18	59	38	16	45

'ASPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 0.15

Table S2902. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ASPN MUTATED	0	0	0	2	1	0
ASPN WILD-TYPE	47	39	35	30	22	35

Figure S1127. Get High-res Image Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GLT8D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S2903. Gene #292: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GLT8D1 MUTATED	0	7	1	0	0
GLT8D1 WILD-TYPE	79	119	26	43	12

'GLT8D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.15

Table S2904. Gene #292: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GLT8D1 MUTATED	0	3	2	0
GLT8D1 WILD-TYPE	71	73	32	63

Figure S1128. Get High-res Image Gene #292: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GLT8D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.49

Table S2905. Gene #292: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GLT8D1 MUTATED	1	2	2	0	2
GLT8D1 WILD-TYPE	15	60	49	65	53

'GLT8D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0708 (Fisher's exact test), Q value = 0.19

Table S2906. Gene #292: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GLT8D1 MUTATED	1	4	1	1
GLT8D1 WILD-TYPE	97	40	49	56

'GLT8D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.12

Table S2907. Gene #292: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GLT8D1 MUTATED	4	0	3	1	0
GLT8D1 WILD-TYPE	58	59	37	36	59

Figure S1129. Get High-res Image Gene #292: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GLT8D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.51

Table S2908. Gene #292: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GLT8D1 MUTATED	4	0	4
GLT8D1 WILD-TYPE	102	54	93

'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00279 (Fisher's exact test), Q value = 0.033

Table S2909. Gene #292: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GLT8D1 MUTATED	8	0	0
GLT8D1 WILD-TYPE	115	95	71

Figure S1130. Get High-res Image Gene #292: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0443 (Fisher's exact test), Q value = 0.15

Table S2910. Gene #292: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GLT8D1 MUTATED	8	0	0
GLT8D1 WILD-TYPE	149	63	69

Figure S1131. Get High-res Image Gene #292: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0733 (Fisher's exact test), Q value = 0.2

Table S2911. Gene #292: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GLT8D1 MUTATED	0	2	3	0	0	0
GLT8D1 WILD-TYPE	33	17	56	39	16	45

'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.61

Table S2912. Gene #292: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GLT8D1 MUTATED	1	0	2	1	1	0
GLT8D1 WILD-TYPE	46	39	33	31	22	35

'KDELR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2913. Gene #293: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KDELR3 MUTATED	1	2	0	0	0
KDELR3 WILD-TYPE	78	124	27	43	12

'KDELR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.78

Table S2914. Gene #293: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KDELR3 MUTATED	1	1	1	0
KDELR3 WILD-TYPE	70	75	33	63

'KDELR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.46

Table S2915. Gene #293: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KDELR3 MUTATED	0	1	2	0	0
KDELR3 WILD-TYPE	16	61	49	65	55

'KDELR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.36

Table S2916. Gene #293: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KDELR3 MUTATED	1	2	0	0
KDELR3 WILD-TYPE	97	42	50	57

'KDELR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.6

Table S2917. Gene #293: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KDELR3 MUTATED	2	0	1
KDELR3 WILD-TYPE	121	95	70

'KDELR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2918. Gene #293: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KDELR3 MUTATED	2	0	1
KDELR3 WILD-TYPE	155	63	68

'KDELR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.75

Table S2919. Gene #293: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KDELR3 MUTATED	1	0	2	0	0	0
KDELR3 WILD-TYPE	32	19	57	39	16	45

'KDELR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.33

Table S2920. Gene #293: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KDELR3 MUTATED	0	0	2	0	0	1
KDELR3 WILD-TYPE	47	39	33	32	23	34

'ZNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.31

Table S2921. Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF43 MUTATED	2	14	3	3	1
ZNF43 WILD-TYPE	77	112	24	40	11

'ZNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.13

Table S2922. Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF43 MUTATED	2	10	4	2
ZNF43 WILD-TYPE	69	66	30	61

Figure S1132. Get High-res Image Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 0.9

Table S2923. Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZNF43 MUTATED	2	4	4	5	6
ZNF43 WILD-TYPE	14	58	47	60	49

'ZNF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.27

Table S2924. Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZNF43 MUTATED	7	8	3	3
ZNF43 WILD-TYPE	91	36	47	54

'ZNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S2925. Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZNF43 MUTATED	9	1	0	9	2
ZNF43 WILD-TYPE	53	58	40	28	57

Figure S1133. Get High-res Image Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0775 (Fisher's exact test), Q value = 0.2

Table S2926. Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZNF43 MUTATED	5	3	13
ZNF43 WILD-TYPE	101	51	84

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00118 (Fisher's exact test), Q value = 0.02

Table S2927. Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZNF43 MUTATED	18	4	1
ZNF43 WILD-TYPE	105	91	70

Figure S1134. Get High-res Image Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.004 (Fisher's exact test), Q value = 0.04

Table S2928. Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZNF43 MUTATED	20	2	1
ZNF43 WILD-TYPE	137	61	68

Figure S1135. Get High-res Image Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00713 (Fisher's exact test), Q value = 0.055

Table S2929. Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZNF43 MUTATED	1	4	8	1	1	0
ZNF43 WILD-TYPE	32	15	51	38	15	45

Figure S1136. Get High-res Image Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S2930. Gene #294: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZNF43 MUTATED	4	1	6	3	0	1
ZNF43 WILD-TYPE	43	38	29	29	23	34

'CTSA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.35

Table S2931. Gene #295: 'CTSA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CTSA MUTATED	0	2	0	0	1
CTSA WILD-TYPE	79	124	27	43	11

'CTSA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.49

Table S2932. Gene #295: 'CTSA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CTSA MUTATED	0	1	0	2
CTSA WILD-TYPE	71	75	34	61

'CTSA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2933. Gene #295: 'CTSA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CTSA MUTATED	0	1	0	1	1
CTSA WILD-TYPE	16	61	51	64	54

'CTSA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2934. Gene #295: 'CTSA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CTSA MUTATED	1	0	1	1
CTSA WILD-TYPE	97	44	49	56

'CTSA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.39

Table S2935. Gene #295: 'CTSA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CTSA MUTATED	3	1	0	0	0
CTSA WILD-TYPE	59	58	40	37	59

'CTSA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 0.89

Table S2936. Gene #295: 'CTSA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CTSA MUTATED	1	1	2
CTSA WILD-TYPE	105	53	95

'CTSA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.59

Table S2937. Gene #295: 'CTSA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CTSA MUTATED	3	1	0
CTSA WILD-TYPE	120	94	71

'CTSA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.47

Table S2938. Gene #295: 'CTSA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CTSA MUTATED	2	2	0
CTSA WILD-TYPE	155	61	69

'CTSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 0.97

Table S2939. Gene #295: 'CTSA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CTSA MUTATED	1	0	1	0	0	1
CTSA WILD-TYPE	32	19	58	39	16	44

'CTSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2940. Gene #295: 'CTSA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CTSA MUTATED	1	1	1	0	0	0
CTSA WILD-TYPE	46	38	34	32	23	35

'HIVEP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.12

Table S2941. Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HIVEP1 MUTATED	2	16	3	1	0
HIVEP1 WILD-TYPE	77	110	24	42	12

Figure S1137. Get High-res Image Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HIVEP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00341 (Fisher's exact test), Q value = 0.036

Table S2942. Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HIVEP1 MUTATED	1	13	3	3
HIVEP1 WILD-TYPE	70	63	31	60

Figure S1138. Get High-res Image Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HIVEP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.3

Table S2943. Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HIVEP1 MUTATED	2	8	2	2	5
HIVEP1 WILD-TYPE	14	54	49	63	50

'HIVEP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0388 (Fisher's exact test), Q value = 0.14

Table S2944. Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HIVEP1 MUTATED	4	6	7	2
HIVEP1 WILD-TYPE	94	38	43	55

Figure S1139. Get High-res Image Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HIVEP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00346 (Fisher's exact test), Q value = 0.036

Table S2945. Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HIVEP1 MUTATED	11	1	3	4	1
HIVEP1 WILD-TYPE	51	58	37	33	58

Figure S1140. Get High-res Image Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HIVEP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.0096

Table S2946. Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HIVEP1 MUTATED	3	1	16
HIVEP1 WILD-TYPE	103	53	81

Figure S1141. Get High-res Image Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.08

Table S2947. Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HIVEP1 MUTATED	16	4	2
HIVEP1 WILD-TYPE	107	91	69

Figure S1142. Get High-res Image Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S2948. Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HIVEP1 MUTATED	21	1	0
HIVEP1 WILD-TYPE	136	62	69

Figure S1143. Get High-res Image Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.45

Table S2949. Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HIVEP1 MUTATED	3	3	6	4	0	1
HIVEP1 WILD-TYPE	30	16	53	35	16	44

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00178 (Fisher's exact test), Q value = 0.026

Table S2950. Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HIVEP1 MUTATED	6	0	5	1	5	0
HIVEP1 WILD-TYPE	41	39	30	31	18	35

Figure S1144. Get High-res Image Gene #296: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OR7C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.44

Table S2951. Gene #297: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OR7C1 MUTATED	0	5	0	0	0
OR7C1 WILD-TYPE	79	121	27	43	12

'OR7C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 0.17

Table S2952. Gene #297: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OR7C1 MUTATED	0	4	1	0
OR7C1 WILD-TYPE	71	72	33	63

'OR7C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.56

Table S2953. Gene #297: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OR7C1 MUTATED	0	2	1	0	0
OR7C1 WILD-TYPE	16	60	50	65	55

'OR7C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0431 (Fisher's exact test), Q value = 0.15

Table S2954. Gene #297: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OR7C1 MUTATED	0	2	1	0
OR7C1 WILD-TYPE	98	42	49	57

Figure S1145. Get High-res Image Gene #297: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OR7C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.13

Table S2955. Gene #297: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OR7C1 MUTATED	4	0	0	1	0
OR7C1 WILD-TYPE	58	59	40	36	59

Figure S1146. Get High-res Image Gene #297: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OR7C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.079

Table S2956. Gene #297: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OR7C1 MUTATED	0	0	5
OR7C1 WILD-TYPE	106	54	92

Figure S1147. Get High-res Image Gene #297: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OR7C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S2957. Gene #297: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OR7C1 MUTATED	5	1	0
OR7C1 WILD-TYPE	118	94	71

'OR7C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.5

Table S2958. Gene #297: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OR7C1 MUTATED	5	1	0
OR7C1 WILD-TYPE	152	62	69

'OR7C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.64

Table S2959. Gene #297: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OR7C1 MUTATED	1	1	1	2	0	0
OR7C1 WILD-TYPE	32	18	58	37	16	45

'OR7C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.3

Table S2960. Gene #297: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OR7C1 MUTATED	2	0	1	0	2	0
OR7C1 WILD-TYPE	45	39	34	32	21	35

'MLL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00057 (Fisher's exact test), Q value = 0.013

Table S2961. Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MLL3 MUTATED	4	25	3	4	6
MLL3 WILD-TYPE	75	101	24	39	6

Figure S1148. Get High-res Image Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0049

Table S2962. Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MLL3 MUTATED	3	19	6	2
MLL3 WILD-TYPE	68	57	28	61

Figure S1149. Get High-res Image Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00768 (Fisher's exact test), Q value = 0.057

Table S2963. Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MLL3 MUTATED	4	13	10	2	9
MLL3 WILD-TYPE	12	49	41	63	46

Figure S1150. Get High-res Image Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MLL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00143 (Fisher's exact test), Q value = 0.022

Table S2964. Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MLL3 MUTATED	14	15	6	3
MLL3 WILD-TYPE	84	29	44	54

Figure S1151. Get High-res Image Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00467 (Fisher's exact test), Q value = 0.043

Table S2965. Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MLL3 MUTATED	17	5	8	6	3
MLL3 WILD-TYPE	45	54	32	31	56

Figure S1152. Get High-res Image Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MLL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.0096

Table S2966. Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MLL3 MUTATED	10	3	26
MLL3 WILD-TYPE	96	51	71

Figure S1153. Get High-res Image Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.0097

Table S2967. Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MLL3 MUTATED	30	6	6
MLL3 WILD-TYPE	93	89	65

Figure S1154. Get High-res Image Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0069

Table S2968. Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MLL3 MUTATED	35	4	3
MLL3 WILD-TYPE	122	59	66

Figure S1155. Get High-res Image Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.26

Table S2969. Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MLL3 MUTATED	5	3	6	8	0	2
MLL3 WILD-TYPE	28	16	53	31	16	43

'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.069

Table S2970. Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MLL3 MUTATED	9	1	5	2	6	1
MLL3 WILD-TYPE	38	38	30	30	17	34

Figure S1156. Get High-res Image Gene #298: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KBTBD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00797 (Fisher's exact test), Q value = 0.058

Table S2971. Gene #299: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KBTBD6 MUTATED	0	10	3	0	0
KBTBD6 WILD-TYPE	79	116	24	43	12

Figure S1157. Get High-res Image Gene #299: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KBTBD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.42

Table S2972. Gene #299: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KBTBD6 MUTATED	0	3	1	3
KBTBD6 WILD-TYPE	71	73	33	60

'KBTBD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.084

Table S2973. Gene #299: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KBTBD6 MUTATED	0	3	0	1	7
KBTBD6 WILD-TYPE	16	59	51	64	48

Figure S1158. Get High-res Image Gene #299: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KBTBD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0227 (Fisher's exact test), Q value = 0.1

Table S2974. Gene #299: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KBTBD6 MUTATED	2	6	1	2
KBTBD6 WILD-TYPE	96	38	49	55

Figure S1159. Get High-res Image Gene #299: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KBTBD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S2975. Gene #299: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KBTBD6 MUTATED	6	2	0	2	1
KBTBD6 WILD-TYPE	56	57	40	35	58

'KBTBD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.34

Table S2976. Gene #299: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KBTBD6 MUTATED	2	2	7
KBTBD6 WILD-TYPE	104	52	90

'KBTBD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 0.15

Table S2977. Gene #299: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KBTBD6 MUTATED	10	2	1
KBTBD6 WILD-TYPE	113	93	70

Figure S1160. Get High-res Image Gene #299: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KBTBD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.55

Table S2978. Gene #299: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KBTBD6 MUTATED	9	3	1
KBTBD6 WILD-TYPE	148	60	68

'KBTBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.6

Table S2979. Gene #299: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KBTBD6 MUTATED	1	2	1	1	0	1
KBTBD6 WILD-TYPE	32	17	58	38	16	44

'KBTBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 0.79

Table S2980. Gene #299: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KBTBD6 MUTATED	3	1	1	1	0	0
KBTBD6 WILD-TYPE	44	38	34	31	23	35

'EBF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.47

Table S2981. Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EBF3 MUTATED	1	9	1	1	0
EBF3 WILD-TYPE	78	117	26	42	12

'EBF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00272 (Fisher's exact test), Q value = 0.032

Table S2982. Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EBF3 MUTATED	0	9	2	1
EBF3 WILD-TYPE	71	67	32	62

Figure S1161. Get High-res Image Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EBF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.28

Table S2983. Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EBF3 MUTATED	1	2	4	0	3
EBF3 WILD-TYPE	15	60	47	65	52

'EBF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00073 (Fisher's exact test), Q value = 0.015

Table S2984. Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EBF3 MUTATED	2	7	1	0
EBF3 WILD-TYPE	96	37	49	57

Figure S1162. Get High-res Image Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EBF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00565 (Fisher's exact test), Q value = 0.048

Table S2985. Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EBF3 MUTATED	7	1	0	2	0
EBF3 WILD-TYPE	55	58	40	35	59

Figure S1163. Get High-res Image Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EBF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0255 (Fisher's exact test), Q value = 0.11

Table S2986. Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EBF3 MUTATED	1	1	8
EBF3 WILD-TYPE	105	53	89

Figure S1164. Get High-res Image Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EBF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.14

Table S2987. Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EBF3 MUTATED	9	3	0
EBF3 WILD-TYPE	114	92	71

Figure S1165. Get High-res Image Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EBF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.06 (Fisher's exact test), Q value = 0.17

Table S2988. Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EBF3 MUTATED	10	2	0
EBF3 WILD-TYPE	147	61	69

'EBF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.7

Table S2989. Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EBF3 MUTATED	3	0	3	3	0	1
EBF3 WILD-TYPE	30	19	56	36	16	44

'EBF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.65

Table S2990. Gene #300: 'EBF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EBF3 MUTATED	3	1	2	3	1	0
EBF3 WILD-TYPE	44	38	33	29	22	35

'ELF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0424 (Fisher's exact test), Q value = 0.15

Table S2991. Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ELF3 MUTATED	0	9	1	0	0
ELF3 WILD-TYPE	79	117	26	43	12

Figure S1166. Get High-res Image Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ELF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S2992. Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ELF3 MUTATED	0	4	2	2
ELF3 WILD-TYPE	71	72	32	61

'ELF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.16

Table S2993. Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ELF3 MUTATED	1	7	1	1	1
ELF3 WILD-TYPE	15	55	50	64	54

'ELF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00107 (Fisher's exact test), Q value = 0.019

Table S2994. Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ELF3 MUTATED	1	5	5	0
ELF3 WILD-TYPE	97	39	45	57

Figure S1167. Get High-res Image Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ELF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0096 (Fisher's exact test), Q value = 0.065

Table S2995. Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ELF3 MUTATED	5	1	0	4	0
ELF3 WILD-TYPE	57	58	40	33	59

Figure S1168. Get High-res Image Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ELF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.55

Table S2996. Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ELF3 MUTATED	3	1	6
ELF3 WILD-TYPE	103	53	91

'ELF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.01

Table S2997. Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ELF3 MUTATED	11	0	0
ELF3 WILD-TYPE	112	95	71

Figure S1169. Get High-res Image Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0059 (Fisher's exact test), Q value = 0.05

Table S2998. Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ELF3 MUTATED	11	0	0
ELF3 WILD-TYPE	146	63	69

Figure S1170. Get High-res Image Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.097

Table S2999. Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ELF3 MUTATED	1	0	7	0	0	0
ELF3 WILD-TYPE	32	19	52	39	16	45

Figure S1171. Get High-res Image Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0205 (Fisher's exact test), Q value = 0.097

Table S3000. Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ELF3 MUTATED	2	0	5	1	0	0
ELF3 WILD-TYPE	45	39	30	31	23	35

Figure S1172. Get High-res Image Gene #301: 'ELF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.69

Table S3001. Gene #302: 'RRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RRS1 MUTATED	1	5	1	0	0
RRS1 WILD-TYPE	78	121	26	43	12

'RRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.58

Table S3002. Gene #302: 'RRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RRS1 MUTATED	2	3	0	0
RRS1 WILD-TYPE	69	73	34	63

'RRS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.49

Table S3003. Gene #302: 'RRS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RRS1 MUTATED	1	2	1	0	1
RRS1 WILD-TYPE	15	60	50	65	54

'RRS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.55

Table S3004. Gene #302: 'RRS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RRS1 MUTATED	2	2	1	0
RRS1 WILD-TYPE	96	42	49	57

'RRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.2

Table S3005. Gene #302: 'RRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RRS1 MUTATED	3	0	0	3	1
RRS1 WILD-TYPE	59	59	40	34	58

'RRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S3006. Gene #302: 'RRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RRS1 MUTATED	1	1	5
RRS1 WILD-TYPE	105	53	92

'RRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.86

Table S3007. Gene #302: 'RRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RRS1 MUTATED	4	2	1
RRS1 WILD-TYPE	119	93	70

'RRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 0.19

Table S3008. Gene #302: 'RRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RRS1 MUTATED	7	0	0
RRS1 WILD-TYPE	150	63	69

'RRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.47

Table S3009. Gene #302: 'RRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RRS1 MUTATED	1	0	1	3	0	0
RRS1 WILD-TYPE	32	19	58	36	16	45

'RRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S3010. Gene #302: 'RRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RRS1 MUTATED	3	0	0	1	1	0
RRS1 WILD-TYPE	44	39	35	31	22	35

'MYEOV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0784 (Fisher's exact test), Q value = 0.2

Table S3011. Gene #303: 'MYEOV MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MYEOV MUTATED	0	6	1	0	1
MYEOV WILD-TYPE	79	120	26	43	11

'MYEOV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00882 (Fisher's exact test), Q value = 0.062

Table S3012. Gene #303: 'MYEOV MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MYEOV MUTATED	0	6	1	0
MYEOV WILD-TYPE	71	70	33	63

Figure S1173. Get High-res Image Gene #303: 'MYEOV MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MYEOV MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.66

Table S3013. Gene #303: 'MYEOV MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MYEOV MUTATED	0	2	2	0	2
MYEOV WILD-TYPE	16	60	49	65	53

'MYEOV MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.01

Table S3014. Gene #303: 'MYEOV MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MYEOV MUTATED	0	5	1	0
MYEOV WILD-TYPE	98	39	49	57

Figure S1174. Get High-res Image Gene #303: 'MYEOV MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MYEOV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.17

Table S3015. Gene #303: 'MYEOV MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MYEOV MUTATED	4	0	2	2	0
MYEOV WILD-TYPE	58	59	38	35	59

'MYEOV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00118 (Fisher's exact test), Q value = 0.02

Table S3016. Gene #303: 'MYEOV MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MYEOV MUTATED	0	0	8
MYEOV WILD-TYPE	106	54	89

Figure S1175. Get High-res Image Gene #303: 'MYEOV MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MYEOV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.37

Table S3017. Gene #303: 'MYEOV MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MYEOV MUTATED	6	1	1
MYEOV WILD-TYPE	117	94	70

'MYEOV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.15

Table S3018. Gene #303: 'MYEOV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MYEOV MUTATED	8	0	0
MYEOV WILD-TYPE	149	63	69

Figure S1176. Get High-res Image Gene #303: 'MYEOV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MYEOV MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.44

Table S3019. Gene #303: 'MYEOV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MYEOV MUTATED	1	1	1	3	0	0
MYEOV WILD-TYPE	32	18	58	36	16	45

'MYEOV MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0985 (Fisher's exact test), Q value = 0.23

Table S3020. Gene #303: 'MYEOV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MYEOV MUTATED	3	0	0	1	2	0
MYEOV WILD-TYPE	44	39	35	31	21	35

'SMARCB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 0.17

Table S3021. Gene #304: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SMARCB1 MUTATED	1	7	1	0	2
SMARCB1 WILD-TYPE	78	119	26	43	10

'SMARCB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0434 (Fisher's exact test), Q value = 0.15

Table S3022. Gene #304: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SMARCB1 MUTATED	1	6	1	0
SMARCB1 WILD-TYPE	70	70	33	63

Figure S1177. Get High-res Image Gene #304: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMARCB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0912 (Fisher's exact test), Q value = 0.22

Table S3023. Gene #304: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SMARCB1 MUTATED	0	4	4	0	1
SMARCB1 WILD-TYPE	16	58	47	65	54

'SMARCB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.31

Table S3024. Gene #304: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SMARCB1 MUTATED	3	3	3	0
SMARCB1 WILD-TYPE	95	41	47	57

'SMARCB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.15

Table S3025. Gene #304: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SMARCB1 MUTATED	5	1	0	2	0
SMARCB1 WILD-TYPE	57	58	40	35	59

Figure S1178. Get High-res Image Gene #304: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SMARCB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.36

Table S3026. Gene #304: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SMARCB1 MUTATED	1	2	5
SMARCB1 WILD-TYPE	105	52	92

'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.85

Table S3027. Gene #304: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SMARCB1 MUTATED	6	3	2
SMARCB1 WILD-TYPE	117	92	69

'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.59

Table S3028. Gene #304: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SMARCB1 MUTATED	8	2	1
SMARCB1 WILD-TYPE	149	61	68

'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 0.94

Table S3029. Gene #304: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SMARCB1 MUTATED	1	1	1	1	0	2
SMARCB1 WILD-TYPE	32	18	58	38	16	43

'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 0.75

Table S3030. Gene #304: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SMARCB1 MUTATED	2	2	1	0	1	0
SMARCB1 WILD-TYPE	45	37	34	32	22	35

'MLXIPL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.43

Table S3031. Gene #305: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MLXIPL MUTATED	1	9	1	2	1
MLXIPL WILD-TYPE	78	117	26	41	11

'MLXIPL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.65

Table S3032. Gene #305: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MLXIPL MUTATED	1	4	2	3
MLXIPL WILD-TYPE	70	72	32	60

'MLXIPL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.71

Table S3033. Gene #305: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MLXIPL MUTATED	1	2	4	2	4
MLXIPL WILD-TYPE	15	60	47	63	51

'MLXIPL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0702 (Fisher's exact test), Q value = 0.19

Table S3034. Gene #305: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MLXIPL MUTATED	4	6	2	1
MLXIPL WILD-TYPE	94	38	48	56

'MLXIPL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.34

Table S3035. Gene #305: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MLXIPL MUTATED	7	2	2	1	1
MLXIPL WILD-TYPE	55	57	38	36	58

'MLXIPL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.36

Table S3036. Gene #305: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MLXIPL MUTATED	4	1	8
MLXIPL WILD-TYPE	102	53	89

'MLXIPL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.1

Table S3037. Gene #305: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MLXIPL MUTATED	11	2	1
MLXIPL WILD-TYPE	112	93	70

Figure S1179. Get High-res Image Gene #305: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLXIPL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 0.79

Table S3038. Gene #305: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MLXIPL MUTATED	9	3	2
MLXIPL WILD-TYPE	148	60	67

'MLXIPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.992 (Fisher's exact test), Q value = 1

Table S3039. Gene #305: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MLXIPL MUTATED	2	0	3	2	0	2
MLXIPL WILD-TYPE	31	19	56	37	16	43

'MLXIPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 0.88

Table S3040. Gene #305: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MLXIPL MUTATED	1	2	3	1	1	1
MLXIPL WILD-TYPE	46	37	32	31	22	34

'FAM193A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 0.14

Table S3041. Gene #306: 'FAM193A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM193A MUTATED	2	12	0	0	1
FAM193A WILD-TYPE	77	114	27	43	11

Figure S1180. Get High-res Image Gene #306: 'FAM193A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM193A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S3042. Gene #306: 'FAM193A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM193A MUTATED	2	6	0	1
FAM193A WILD-TYPE	69	70	34	62

'FAM193A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.41

Table S3043. Gene #306: 'FAM193A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FAM193A MUTATED	0	5	2	1	5
FAM193A WILD-TYPE	16	57	49	64	50

'FAM193A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.36

Table S3044. Gene #306: 'FAM193A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FAM193A MUTATED	5	5	2	1
FAM193A WILD-TYPE	93	39	48	56

'FAM193A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 0.16

Table S3045. Gene #306: 'FAM193A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FAM193A MUTATED	4	1	4	5	1
FAM193A WILD-TYPE	58	58	36	32	58

'FAM193A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.1

Table S3046. Gene #306: 'FAM193A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FAM193A MUTATED	3	1	11
FAM193A WILD-TYPE	103	53	86

Figure S1181. Get High-res Image Gene #306: 'FAM193A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM193A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.075

Table S3047. Gene #306: 'FAM193A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FAM193A MUTATED	12	2	1
FAM193A WILD-TYPE	111	93	70

Figure S1182. Get High-res Image Gene #306: 'FAM193A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM193A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0839 (Fisher's exact test), Q value = 0.21

Table S3048. Gene #306: 'FAM193A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FAM193A MUTATED	11	0	4
FAM193A WILD-TYPE	146	63	65

'FAM193A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.46

Table S3049. Gene #306: 'FAM193A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FAM193A MUTATED	2	1	1	2	1	0
FAM193A WILD-TYPE	31	18	58	37	15	45

'FAM193A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.56

Table S3050. Gene #306: 'FAM193A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FAM193A MUTATED	2	0	0	2	1	2
FAM193A WILD-TYPE	45	39	35	30	22	33

'ZNF626 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.54

Table S3051. Gene #307: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF626 MUTATED	2	9	2	1	1
ZNF626 WILD-TYPE	77	117	25	42	11

'ZNF626 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S3052. Gene #307: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF626 MUTATED	3	5	4	1
ZNF626 WILD-TYPE	68	71	30	62

'ZNF626 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.74

Table S3053. Gene #307: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZNF626 MUTATED	0	5	2	2	4
ZNF626 WILD-TYPE	16	57	49	63	51

'ZNF626 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S3054. Gene #307: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZNF626 MUTATED	2	4	4	3
ZNF626 WILD-TYPE	96	40	46	54

'ZNF626 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.71

Table S3055. Gene #307: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZNF626 MUTATED	6	3	1	2	2
ZNF626 WILD-TYPE	56	56	39	35	57

'ZNF626 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.55

Table S3056. Gene #307: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZNF626 MUTATED	5	5	4
ZNF626 WILD-TYPE	101	49	93

'ZNF626 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 0.98

Table S3057. Gene #307: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZNF626 MUTATED	7	5	3
ZNF626 WILD-TYPE	116	90	68

'ZNF626 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.7

Table S3058. Gene #307: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZNF626 MUTATED	10	3	2
ZNF626 WILD-TYPE	147	60	67

'ZNF626 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.76

Table S3059. Gene #307: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZNF626 MUTATED	2	1	5	1	0	1
ZNF626 WILD-TYPE	31	18	54	38	16	44

'ZNF626 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.34

Table S3060. Gene #307: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZNF626 MUTATED	2	0	3	1	3	1
ZNF626 WILD-TYPE	45	39	32	31	20	34

'BRWD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 0.18

Table S3061. Gene #308: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BRWD1 MUTATED	3	14	2	0	1
BRWD1 WILD-TYPE	76	112	25	43	11

'BRWD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.55

Table S3062. Gene #308: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BRWD1 MUTATED	4	9	2	3
BRWD1 WILD-TYPE	67	67	32	60

'BRWD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.23

Table S3063. Gene #308: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BRWD1 MUTATED	1	3	9	3	3
BRWD1 WILD-TYPE	15	59	42	62	52

'BRWD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0574 (Fisher's exact test), Q value = 0.17

Table S3064. Gene #308: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BRWD1 MUTATED	6	8	3	2
BRWD1 WILD-TYPE	92	36	47	55

'BRWD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 0.15

Table S3065. Gene #308: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BRWD1 MUTATED	9	1	1	4	4
BRWD1 WILD-TYPE	53	58	39	33	55

Figure S1183. Get High-res Image Gene #308: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRWD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S3066. Gene #308: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BRWD1 MUTATED	6	2	11
BRWD1 WILD-TYPE	100	52	86

'BRWD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.1

Table S3067. Gene #308: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BRWD1 MUTATED	15	3	3
BRWD1 WILD-TYPE	108	92	68

Figure S1184. Get High-res Image Gene #308: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRWD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.67

Table S3068. Gene #308: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BRWD1 MUTATED	14	3	4
BRWD1 WILD-TYPE	143	60	65

'BRWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.17

Table S3069. Gene #308: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BRWD1 MUTATED	5	4	6	1	1	1
BRWD1 WILD-TYPE	28	15	53	38	15	44

'BRWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.41

Table S3070. Gene #308: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BRWD1 MUTATED	7	1	4	1	1	4
BRWD1 WILD-TYPE	40	38	31	31	22	31

'TAS2R42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 0.87

Table S3071. Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TAS2R42 MUTATED	2	2	0	0	0
TAS2R42 WILD-TYPE	77	124	27	43	12

'TAS2R42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.17

Table S3072. Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TAS2R42 MUTATED	2	0	2	0
TAS2R42 WILD-TYPE	69	76	32	63

'TAS2R42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.63

Table S3073. Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TAS2R42 MUTATED	0	2	0	0	1
TAS2R42 WILD-TYPE	16	60	51	65	54

'TAS2R42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3074. Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TAS2R42 MUTATED	1	0	1	1
TAS2R42 WILD-TYPE	97	44	49	56

'TAS2R42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.45

Table S3075. Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TAS2R42 MUTATED	2	0	1	0	0
TAS2R42 WILD-TYPE	60	59	39	37	59

'TAS2R42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 0.86

Table S3076. Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TAS2R42 MUTATED	2	0	1
TAS2R42 WILD-TYPE	104	54	96

'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.43

Table S3077. Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TAS2R42 MUTATED	2	0	2
TAS2R42 WILD-TYPE	121	95	69

'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.64

Table S3078. Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TAS2R42 MUTATED	2	0	2
TAS2R42 WILD-TYPE	155	63	67

'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.47

Table S3079. Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TAS2R42 MUTATED	2	0	1	0	0	0
TAS2R42 WILD-TYPE	31	19	58	39	16	45

'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.71

Table S3080. Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TAS2R42 MUTATED	1	0	0	0	1	1
TAS2R42 WILD-TYPE	46	39	35	32	22	34

'CDK12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S3081. Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDK12 MUTATED	2	13	2	1	0
CDK12 WILD-TYPE	77	113	25	42	12

'CDK12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.16

Table S3082. Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDK12 MUTATED	1	8	4	3
CDK12 WILD-TYPE	70	68	30	60

'CDK12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0053

Table S3083. Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CDK12 MUTATED	1	12	1	0	3
CDK12 WILD-TYPE	15	50	50	65	52

Figure S1185. Get High-res Image Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDK12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0018 (Fisher's exact test), Q value = 0.026

Table S3084. Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CDK12 MUTATED	4	5	8	0
CDK12 WILD-TYPE	94	39	42	57

Figure S1186. Get High-res Image Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDK12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.013

Table S3085. Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CDK12 MUTATED	11	1	0	1	2
CDK12 WILD-TYPE	51	58	40	36	57

Figure S1187. Get High-res Image Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDK12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.5

Table S3086. Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CDK12 MUTATED	8	1	6
CDK12 WILD-TYPE	98	53	91

'CDK12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.11

Table S3087. Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CDK12 MUTATED	14	3	2
CDK12 WILD-TYPE	109	92	69

Figure S1188. Get High-res Image Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDK12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S3088. Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CDK12 MUTATED	14	3	2
CDK12 WILD-TYPE	143	60	67

'CDK12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.12

Table S3089. Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CDK12 MUTATED	4	1	8	1	0	0
CDK12 WILD-TYPE	29	18	51	38	16	45

Figure S1189. Get High-res Image Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDK12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 0.1

Table S3090. Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CDK12 MUTATED	3	0	7	2	1	1
CDK12 WILD-TYPE	44	39	28	30	22	34

Figure S1190. Get High-res Image Gene #310: 'CDK12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CPB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.17

Table S3091. Gene #311: 'CPB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CPB2 MUTATED	0	8	0	0	0
CPB2 WILD-TYPE	79	118	27	43	12

'CPB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.087

Table S3092. Gene #311: 'CPB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CPB2 MUTATED	0	6	0	1
CPB2 WILD-TYPE	71	70	34	62

Figure S1191. Get High-res Image Gene #311: 'CPB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CPB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.48

Table S3093. Gene #311: 'CPB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CPB2 MUTATED	0	5	1	1	1
CPB2 WILD-TYPE	16	57	50	64	54

'CPB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00079 (Fisher's exact test), Q value = 0.016

Table S3094. Gene #311: 'CPB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CPB2 MUTATED	0	4	4	0
CPB2 WILD-TYPE	98	40	46	57

Figure S1192. Get High-res Image Gene #311: 'CPB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CPB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.13

Table S3095. Gene #311: 'CPB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CPB2 MUTATED	5	2	0	0	0
CPB2 WILD-TYPE	57	57	40	37	59

Figure S1193. Get High-res Image Gene #311: 'CPB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CPB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S3096. Gene #311: 'CPB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CPB2 MUTATED	1	1	5
CPB2 WILD-TYPE	105	53	92

'CPB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.6

Table S3097. Gene #311: 'CPB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CPB2 MUTATED	6	2	1
CPB2 WILD-TYPE	117	93	70

'CPB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.26

Table S3098. Gene #311: 'CPB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CPB2 MUTATED	8	1	0
CPB2 WILD-TYPE	149	62	69

'CPB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.69

Table S3099. Gene #311: 'CPB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CPB2 MUTATED	1	1	3	2	0	0
CPB2 WILD-TYPE	32	18	56	37	16	45

'CPB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.43

Table S3100. Gene #311: 'CPB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CPB2 MUTATED	2	0	3	1	1	0
CPB2 WILD-TYPE	45	39	32	31	22	35

'RCOR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.12

Table S3101. Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RCOR3 MUTATED	0	9	2	0	0
RCOR3 WILD-TYPE	79	117	25	43	12

Figure S1194. Get High-res Image Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RCOR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00115 (Fisher's exact test), Q value = 0.02

Table S3102. Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RCOR3 MUTATED	0	8	2	0
RCOR3 WILD-TYPE	71	68	32	63

Figure S1195. Get High-res Image Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RCOR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.24

Table S3103. Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RCOR3 MUTATED	1	3	2	0	5
RCOR3 WILD-TYPE	15	59	49	65	50

'RCOR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00168 (Fisher's exact test), Q value = 0.025

Table S3104. Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RCOR3 MUTATED	1	7	2	1
RCOR3 WILD-TYPE	97	37	48	56

Figure S1196. Get High-res Image Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RCOR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00078 (Fisher's exact test), Q value = 0.016

Table S3105. Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RCOR3 MUTATED	7	0	1	0	0
RCOR3 WILD-TYPE	55	59	39	37	59

Figure S1197. Get High-res Image Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RCOR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.081

Table S3106. Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RCOR3 MUTATED	1	0	7
RCOR3 WILD-TYPE	105	54	90

Figure S1198. Get High-res Image Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RCOR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.37

Table S3107. Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RCOR3 MUTATED	8	3	1
RCOR3 WILD-TYPE	115	92	70

'RCOR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0591 (Fisher's exact test), Q value = 0.17

Table S3108. Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RCOR3 MUTATED	10	2	0
RCOR3 WILD-TYPE	147	61	69

'RCOR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 0.73

Table S3109. Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RCOR3 MUTATED	3	0	4	2	0	1
RCOR3 WILD-TYPE	30	19	55	37	16	44

'RCOR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.57

Table S3110. Gene #312: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RCOR3 MUTATED	3	1	3	1	2	0
RCOR3 WILD-TYPE	44	38	32	31	21	35

'TAF1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.31

Table S3111. Gene #313: 'TAF1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TAF1L MUTATED	3	14	3	1	1
TAF1L WILD-TYPE	76	112	24	42	11

'TAF1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.29

Table S3112. Gene #313: 'TAF1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TAF1L MUTATED	2	9	3	3
TAF1L WILD-TYPE	69	67	31	60

'TAF1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.43

Table S3113. Gene #313: 'TAF1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TAF1L MUTATED	0	6	6	2	5
TAF1L WILD-TYPE	16	56	45	63	50

'TAF1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0399 (Fisher's exact test), Q value = 0.14

Table S3114. Gene #313: 'TAF1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TAF1L MUTATED	4	6	7	2
TAF1L WILD-TYPE	94	38	43	55

Figure S1199. Get High-res Image Gene #313: 'TAF1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TAF1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.066

Table S3115. Gene #313: 'TAF1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TAF1L MUTATED	12	3	1	1	3
TAF1L WILD-TYPE	50	56	39	36	56

Figure S1200. Get High-res Image Gene #313: 'TAF1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TAF1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.45

Table S3116. Gene #313: 'TAF1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TAF1L MUTATED	6	3	11
TAF1L WILD-TYPE	100	51	86

'TAF1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S3117. Gene #313: 'TAF1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TAF1L MUTATED	13	7	2
TAF1L WILD-TYPE	110	88	69

'TAF1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.23

Table S3118. Gene #313: 'TAF1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TAF1L MUTATED	17	2	3
TAF1L WILD-TYPE	140	61	66

'TAF1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 0.86

Table S3119. Gene #313: 'TAF1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TAF1L MUTATED	4	1	5	2	0	4
TAF1L WILD-TYPE	29	18	54	37	16	41

'TAF1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.94

Table S3120. Gene #313: 'TAF1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TAF1L MUTATED	4	3	3	3	2	1
TAF1L WILD-TYPE	43	36	32	29	21	34

'GPR124 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.37

Table S3121. Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPR124 MUTATED	1	10	1	1	0
GPR124 WILD-TYPE	78	116	26	42	12

'GPR124 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.13

Table S3122. Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPR124 MUTATED	0	7	1	2
GPR124 WILD-TYPE	71	69	33	61

Figure S1201. Get High-res Image Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPR124 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.44

Table S3123. Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GPR124 MUTATED	1	6	2	1	3
GPR124 WILD-TYPE	15	56	49	64	52

'GPR124 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0072 (Fisher's exact test), Q value = 0.055

Table S3124. Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GPR124 MUTATED	3	6	4	0
GPR124 WILD-TYPE	95	38	46	57

Figure S1202. Get High-res Image Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR124 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.004 (Fisher's exact test), Q value = 0.04

Table S3125. Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GPR124 MUTATED	4	0	1	6	1
GPR124 WILD-TYPE	58	59	39	31	58

Figure S1203. Get High-res Image Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPR124 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0548 (Fisher's exact test), Q value = 0.17

Table S3126. Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GPR124 MUTATED	4	0	8
GPR124 WILD-TYPE	102	54	89

'GPR124 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.01

Table S3127. Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GPR124 MUTATED	12	0	1
GPR124 WILD-TYPE	111	95	70

Figure S1204. Get High-res Image Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPR124 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.074

Table S3128. Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GPR124 MUTATED	12	1	0
GPR124 WILD-TYPE	145	62	69

Figure S1205. Get High-res Image Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPR124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0978 (Fisher's exact test), Q value = 0.23

Table S3129. Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GPR124 MUTATED	0	2	5	2	0	0
GPR124 WILD-TYPE	33	17	54	37	16	45

'GPR124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0454 (Fisher's exact test), Q value = 0.15

Table S3130. Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GPR124 MUTATED	4	0	3	0	2	0
GPR124 WILD-TYPE	43	39	32	32	21	35

Figure S1206. Get High-res Image Gene #314: 'GPR124 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.26

Table S3131. Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
COL12A1 MUTATED	8	28	4	4	1
COL12A1 WILD-TYPE	71	98	23	39	11

'COL12A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00186 (Fisher's exact test), Q value = 0.027

Table S3132. Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
COL12A1 MUTATED	6	22	3	6
COL12A1 WILD-TYPE	65	54	31	57

Figure S1207. Get High-res Image Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'COL12A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S3133. Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
COL12A1 MUTATED	3	13	7	5	13
COL12A1 WILD-TYPE	13	49	44	60	42

'COL12A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0455 (Fisher's exact test), Q value = 0.15

Table S3134. Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
COL12A1 MUTATED	14	13	9	5
COL12A1 WILD-TYPE	84	31	41	52

Figure S1208. Get High-res Image Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.23

Table S3135. Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
COL12A1 MUTATED	13	5	8	9	6
COL12A1 WILD-TYPE	49	54	32	28	53

'COL12A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00507 (Fisher's exact test), Q value = 0.045

Table S3136. Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
COL12A1 MUTATED	14	3	24
COL12A1 WILD-TYPE	92	51	73

Figure S1209. Get High-res Image Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S3137. Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
COL12A1 MUTATED	34	9	3
COL12A1 WILD-TYPE	89	86	68

Figure S1210. Get High-res Image Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0282 (Fisher's exact test), Q value = 0.11

Table S3138. Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
COL12A1 MUTATED	32	4	10
COL12A1 WILD-TYPE	125	59	59

Figure S1211. Get High-res Image Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0679 (Fisher's exact test), Q value = 0.19

Table S3139. Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
COL12A1 MUTATED	6	7	13	5	3	3
COL12A1 WILD-TYPE	27	12	46	34	13	42

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0115 (Fisher's exact test), Q value = 0.071

Table S3140. Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
COL12A1 MUTATED	15	3	9	3	1	6
COL12A1 WILD-TYPE	32	36	26	29	22	29

Figure S1212. Get High-res Image Gene #315: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OR2J3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.68

Table S3141. Gene #316: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OR2J3 MUTATED	1	5	0	0	0
OR2J3 WILD-TYPE	78	121	27	43	12

'OR2J3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.078

Table S3142. Gene #316: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OR2J3 MUTATED	0	5	0	0
OR2J3 WILD-TYPE	71	71	34	63

Figure S1213. Get High-res Image Gene #316: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OR2J3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.78

Table S3143. Gene #316: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OR2J3 MUTATED	0	2	2	2	0
OR2J3 WILD-TYPE	16	60	49	63	55

'OR2J3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 0.15

Table S3144. Gene #316: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OR2J3 MUTATED	0	3	1	2
OR2J3 WILD-TYPE	98	41	49	55

Figure S1214. Get High-res Image Gene #316: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OR2J3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.72

Table S3145. Gene #316: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OR2J3 MUTATED	2	1	0	2	1
OR2J3 WILD-TYPE	60	58	40	35	58

'OR2J3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.52

Table S3146. Gene #316: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OR2J3 MUTATED	1	2	3
OR2J3 WILD-TYPE	105	52	94

'OR2J3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 0.92

Table S3147. Gene #316: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OR2J3 MUTATED	2	2	2
OR2J3 WILD-TYPE	121	93	69

'OR2J3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3148. Gene #316: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OR2J3 MUTATED	4	1	1
OR2J3 WILD-TYPE	153	62	68

'OR2J3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.79

Table S3149. Gene #316: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OR2J3 MUTATED	1	1	2	1	0	0
OR2J3 WILD-TYPE	32	18	57	38	16	45

'OR2J3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 0.92

Table S3150. Gene #316: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OR2J3 MUTATED	2	0	1	1	0	1
OR2J3 WILD-TYPE	45	39	34	31	23	34

'ENTPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.35

Table S3151. Gene #317: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ENTPD2 MUTATED	0	3	0	0	1
ENTPD2 WILD-TYPE	79	123	27	43	11

'ENTPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S3152. Gene #317: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ENTPD2 MUTATED	0	2	1	0
ENTPD2 WILD-TYPE	71	74	33	63

'ENTPD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 0.83

Table S3153. Gene #317: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ENTPD2 MUTATED	0	1	1	0	1
ENTPD2 WILD-TYPE	16	61	50	65	54

'ENTPD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0852 (Fisher's exact test), Q value = 0.21

Table S3154. Gene #317: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ENTPD2 MUTATED	0	2	0	1
ENTPD2 WILD-TYPE	98	42	50	56

'ENTPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.79

Table S3155. Gene #317: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ENTPD2 MUTATED	2	1	1	0	0
ENTPD2 WILD-TYPE	60	58	39	37	59

'ENTPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 0.89

Table S3156. Gene #317: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ENTPD2 MUTATED	1	1	2
ENTPD2 WILD-TYPE	105	53	95

'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.51

Table S3157. Gene #317: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ENTPD2 MUTATED	3	0	1
ENTPD2 WILD-TYPE	120	95	70

'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 0.87

Table S3158. Gene #317: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ENTPD2 MUTATED	3	0	1
ENTPD2 WILD-TYPE	154	63	68

'ITPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 0.13

Table S3159. Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ITPR2 MUTATED	2	15	2	3	3
ITPR2 WILD-TYPE	77	111	25	40	9

Figure S1215. Get High-res Image Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ITPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.13

Table S3160. Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ITPR2 MUTATED	2	10	4	2
ITPR2 WILD-TYPE	69	66	30	61

Figure S1216. Get High-res Image Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ITPR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S3161. Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ITPR2 MUTATED	2	7	5	1	5
ITPR2 WILD-TYPE	14	55	46	64	50

'ITPR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S3162. Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ITPR2 MUTATED	5	12	2	1
ITPR2 WILD-TYPE	93	32	48	56

Figure S1217. Get High-res Image Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.0079

Table S3163. Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ITPR2 MUTATED	14	1	3	3	1
ITPR2 WILD-TYPE	48	58	37	34	58

Figure S1218. Get High-res Image Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00757 (Fisher's exact test), Q value = 0.057

Table S3164. Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ITPR2 MUTATED	6	1	15
ITPR2 WILD-TYPE	100	53	82

Figure S1219. Get High-res Image Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00339 (Fisher's exact test), Q value = 0.036

Table S3165. Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ITPR2 MUTATED	18	2	5
ITPR2 WILD-TYPE	105	93	66

Figure S1220. Get High-res Image Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0262 (Fisher's exact test), Q value = 0.11

Table S3166. Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ITPR2 MUTATED	20	3	2
ITPR2 WILD-TYPE	137	60	67

Figure S1221. Get High-res Image Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.54

Table S3167. Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ITPR2 MUTATED	2	1	7	4	0	1
ITPR2 WILD-TYPE	31	18	52	35	16	44

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 0.16

Table S3168. Gene #318: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ITPR2 MUTATED	7	1	5	1	0	1
ITPR2 WILD-TYPE	40	38	30	31	23	34

'SOAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.55

Table S3169. Gene #319: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SOAT1 MUTATED	0	5	0	1	0
SOAT1 WILD-TYPE	79	121	27	42	12

'SOAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.17

Table S3170. Gene #319: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SOAT1 MUTATED	0	4	1	0
SOAT1 WILD-TYPE	71	72	33	63

'SOAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.66

Table S3171. Gene #319: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SOAT1 MUTATED	0	2	2	0	2
SOAT1 WILD-TYPE	16	60	49	65	53

'SOAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.31

Table S3172. Gene #319: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SOAT1 MUTATED	2	3	1	0
SOAT1 WILD-TYPE	96	41	49	57

'SOAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S3173. Gene #319: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SOAT1 MUTATED	2	0	1	2	0
SOAT1 WILD-TYPE	60	59	39	35	59

'SOAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.38

Table S3174. Gene #319: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SOAT1 MUTATED	1	0	4
SOAT1 WILD-TYPE	105	54	93

'SOAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S3175. Gene #319: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SOAT1 MUTATED	5	1	0
SOAT1 WILD-TYPE	118	94	71

'SOAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S3176. Gene #319: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SOAT1 MUTATED	6	0	0
SOAT1 WILD-TYPE	151	63	69

'SOAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S3177. Gene #319: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SOAT1 MUTATED	1	1	0	2	0	0
SOAT1 WILD-TYPE	32	18	59	37	16	45

'SOAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S3178. Gene #319: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SOAT1 MUTATED	1	0	0	2	1	0
SOAT1 WILD-TYPE	46	39	35	30	22	35

'GPR82 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 0.8

Table S3179. Gene #320: 'GPR82 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPR82 MUTATED	1	6	1	1	0
GPR82 WILD-TYPE	78	120	26	42	12

'GPR82 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.094

Table S3180. Gene #320: 'GPR82 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPR82 MUTATED	1	7	1	0
GPR82 WILD-TYPE	70	69	33	63

Figure S1222. Get High-res Image Gene #320: 'GPR82 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPR82 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.43

Table S3181. Gene #320: 'GPR82 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GPR82 MUTATED	0	2	3	0	3
GPR82 WILD-TYPE	16	60	48	65	52

'GPR82 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00452 (Fisher's exact test), Q value = 0.042

Table S3182. Gene #320: 'GPR82 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GPR82 MUTATED	1	5	2	0
GPR82 WILD-TYPE	97	39	48	57

Figure S1223. Get High-res Image Gene #320: 'GPR82 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR82 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.38

Table S3183. Gene #320: 'GPR82 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GPR82 MUTATED	4	0	1	2	1
GPR82 WILD-TYPE	58	59	39	35	58

'GPR82 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00113 (Fisher's exact test), Q value = 0.02

Table S3184. Gene #320: 'GPR82 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GPR82 MUTATED	0	0	8
GPR82 WILD-TYPE	106	54	89

Figure S1224. Get High-res Image Gene #320: 'GPR82 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR82 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.3

Table S3185. Gene #320: 'GPR82 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GPR82 MUTATED	7	1	1
GPR82 WILD-TYPE	116	94	70

'GPR82 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.6

Table S3186. Gene #320: 'GPR82 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GPR82 MUTATED	7	1	1
GPR82 WILD-TYPE	150	62	68

'GPR82 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.64

Table S3187. Gene #320: 'GPR82 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GPR82 MUTATED	2	1	2	2	0	0
GPR82 WILD-TYPE	31	18	57	37	16	45

'GPR82 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.56

Table S3188. Gene #320: 'GPR82 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GPR82 MUTATED	2	0	2	2	1	0
GPR82 WILD-TYPE	45	39	33	30	22	35

'ACTL6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.21

Table S3189. Gene #321: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ACTL6A MUTATED	0	6	2	0	0
ACTL6A WILD-TYPE	79	120	25	43	12

'ACTL6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00505 (Fisher's exact test), Q value = 0.045

Table S3190. Gene #321: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ACTL6A MUTATED	0	5	3	0
ACTL6A WILD-TYPE	71	71	31	63

Figure S1225. Get High-res Image Gene #321: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ACTL6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S3191. Gene #321: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ACTL6A MUTATED	1	0	3	1	2
ACTL6A WILD-TYPE	15	62	48	64	53

'ACTL6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0661 (Fisher's exact test), Q value = 0.19

Table S3192. Gene #321: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ACTL6A MUTATED	2	4	0	1
ACTL6A WILD-TYPE	96	40	50	56

'ACTL6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.27

Table S3193. Gene #321: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ACTL6A MUTATED	3	0	2	1	0
ACTL6A WILD-TYPE	59	59	38	36	59

'ACTL6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S3194. Gene #321: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ACTL6A MUTATED	1	0	5
ACTL6A WILD-TYPE	105	54	92

'ACTL6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.37

Table S3195. Gene #321: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ACTL6A MUTATED	6	1	1
ACTL6A WILD-TYPE	117	94	70

'ACTL6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S3196. Gene #321: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ACTL6A MUTATED	7	1	0
ACTL6A WILD-TYPE	150	62	69

'ACTL6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 0.93

Table S3197. Gene #321: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ACTL6A MUTATED	1	1	2	2	1	1
ACTL6A WILD-TYPE	32	18	57	37	15	44

'ACTL6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.55

Table S3198. Gene #321: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ACTL6A MUTATED	1	1	2	3	1	0
ACTL6A WILD-TYPE	46	38	33	29	22	35

'CTSD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.62

Table S3199. Gene #322: 'CTSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CTSD MUTATED	1	6	0	0	0
CTSD WILD-TYPE	78	120	27	43	12

'CTSD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.38

Table S3200. Gene #322: 'CTSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CTSD MUTATED	1	5	0	1
CTSD WILD-TYPE	70	71	34	62

'CTSD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 0.9

Table S3201. Gene #322: 'CTSD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CTSD MUTATED	0	1	2	1	2
CTSD WILD-TYPE	16	61	49	64	53

'CTSD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.37

Table S3202. Gene #322: 'CTSD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CTSD MUTATED	1	3	1	1
CTSD WILD-TYPE	97	41	49	56

'CTSD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.57

Table S3203. Gene #322: 'CTSD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CTSD MUTATED	4	1	0	1	1
CTSD WILD-TYPE	58	58	40	36	58

'CTSD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0473 (Fisher's exact test), Q value = 0.15

Table S3204. Gene #322: 'CTSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CTSD MUTATED	1	0	6
CTSD WILD-TYPE	105	54	91

Figure S1226. Get High-res Image Gene #322: 'CTSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTSD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.71

Table S3205. Gene #322: 'CTSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CTSD MUTATED	4	1	2
CTSD WILD-TYPE	119	94	69

'CTSD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.63

Table S3206. Gene #322: 'CTSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CTSD MUTATED	5	0	2
CTSD WILD-TYPE	152	63	67

'CTSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.64

Table S3207. Gene #322: 'CTSD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CTSD MUTATED	1	1	3	1	1	0
CTSD WILD-TYPE	32	18	56	38	15	45

'CTSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.35

Table S3208. Gene #322: 'CTSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CTSD MUTATED	4	0	2	0	0	1
CTSD WILD-TYPE	43	39	33	32	23	34

'GON4L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.089

Table S3209. Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GON4L MUTATED	0	9	0	0	1
GON4L WILD-TYPE	79	117	27	43	11

Figure S1227. Get High-res Image Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GON4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00225 (Fisher's exact test), Q value = 0.03

Table S3210. Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GON4L MUTATED	0	7	2	0
GON4L WILD-TYPE	71	69	32	63

Figure S1228. Get High-res Image Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GON4L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.066

Table S3211. Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GON4L MUTATED	0	4	5	0	0
GON4L WILD-TYPE	16	58	46	65	55

Figure S1229. Get High-res Image Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GON4L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00486 (Fisher's exact test), Q value = 0.044

Table S3212. Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GON4L MUTATED	1	5	3	0
GON4L WILD-TYPE	97	39	47	57

Figure S1230. Get High-res Image Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GON4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00436 (Fisher's exact test), Q value = 0.042

Table S3213. Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GON4L MUTATED	7	1	0	1	0
GON4L WILD-TYPE	55	58	40	36	59

Figure S1231. Get High-res Image Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GON4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S3214. Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GON4L MUTATED	2	1	6
GON4L WILD-TYPE	104	53	91

'GON4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.21

Table S3215. Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GON4L MUTATED	8	1	1
GON4L WILD-TYPE	115	94	70

'GON4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.17

Table S3216. Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GON4L MUTATED	9	1	0
GON4L WILD-TYPE	148	62	69

'GON4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.7

Table S3217. Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GON4L MUTATED	0	0	4	2	0	1
GON4L WILD-TYPE	33	19	55	37	16	44

'GON4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.29

Table S3218. Gene #323: 'GON4L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GON4L MUTATED	1	1	3	0	2	0
GON4L WILD-TYPE	46	38	32	32	21	35

'KLC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.54

Table S3219. Gene #324: 'KLC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KLC2 MUTATED	2	8	1	0	0
KLC2 WILD-TYPE	77	118	26	43	12

'KLC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.76

Table S3220. Gene #324: 'KLC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KLC2 MUTATED	3	3	2	1
KLC2 WILD-TYPE	68	73	32	62

'KLC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.36

Table S3221. Gene #324: 'KLC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KLC2 MUTATED	0	4	2	0	1
KLC2 WILD-TYPE	16	58	49	65	54

'KLC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.32

Table S3222. Gene #324: 'KLC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KLC2 MUTATED	2	2	3	0
KLC2 WILD-TYPE	96	42	47	57

'KLC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 0.19

Table S3223. Gene #324: 'KLC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KLC2 MUTATED	4	0	2	1	0
KLC2 WILD-TYPE	58	59	38	36	59

'KLC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00126 (Fisher's exact test), Q value = 0.021

Table S3224. Gene #324: 'KLC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KLC2 MUTATED	0	0	7
KLC2 WILD-TYPE	106	54	90

Figure S1232. Get High-res Image Gene #324: 'KLC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KLC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00504 (Fisher's exact test), Q value = 0.045

Table S3225. Gene #324: 'KLC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KLC2 MUTATED	10	1	0
KLC2 WILD-TYPE	113	94	71

Figure S1233. Get High-res Image Gene #324: 'KLC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KLC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.14

Table S3226. Gene #324: 'KLC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KLC2 MUTATED	10	1	0
KLC2 WILD-TYPE	147	62	69

Figure S1234. Get High-res Image Gene #324: 'KLC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KLC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S3227. Gene #324: 'KLC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KLC2 MUTATED	0	2	3	2	0	0
KLC2 WILD-TYPE	33	17	56	37	16	45

'KLC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S3228. Gene #324: 'KLC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KLC2 MUTATED	2	0	3	2	0	0
KLC2 WILD-TYPE	45	39	32	30	23	35

'GNPNAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.7

Table S3229. Gene #325: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GNPNAT1 MUTATED	0	3	0	1	0
GNPNAT1 WILD-TYPE	79	123	27	42	12

'GNPNAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S3230. Gene #325: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GNPNAT1 MUTATED	0	2	0	1
GNPNAT1 WILD-TYPE	71	74	34	62

'GNPNAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.6

Table S3231. Gene #325: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GNPNAT1 MUTATED	1	1	0	1	1
GNPNAT1 WILD-TYPE	15	61	51	64	54

'GNPNAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 0.95

Table S3232. Gene #325: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GNPNAT1 MUTATED	1	1	1	1
GNPNAT1 WILD-TYPE	97	43	49	56

'GNPNAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.42

Table S3233. Gene #325: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GNPNAT1 MUTATED	2	0	0	1	0
GNPNAT1 WILD-TYPE	60	59	40	36	59

'GNPNAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 0.86

Table S3234. Gene #325: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GNPNAT1 MUTATED	2	0	1
GNPNAT1 WILD-TYPE	104	54	96

'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.6

Table S3235. Gene #325: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GNPNAT1 MUTATED	3	1	0
GNPNAT1 WILD-TYPE	120	94	71

'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 0.75

Table S3236. Gene #325: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GNPNAT1 MUTATED	3	1	0
GNPNAT1 WILD-TYPE	154	62	69

'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 0.84

Table S3237. Gene #325: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GNPNAT1 MUTATED	0	0	2	1	0	0
GNPNAT1 WILD-TYPE	33	19	57	38	16	45

'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.29

Table S3238. Gene #325: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GNPNAT1 MUTATED	0	0	2	1	0	0
GNPNAT1 WILD-TYPE	47	39	33	31	23	35

'RBM6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.12

Table S3239. Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RBM6 MUTATED	1	15	1	2	1
RBM6 WILD-TYPE	78	111	26	41	11

Figure S1235. Get High-res Image Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RBM6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00292 (Fisher's exact test), Q value = 0.033

Table S3240. Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RBM6 MUTATED	1	9	2	0
RBM6 WILD-TYPE	70	67	32	63

Figure S1236. Get High-res Image Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RBM6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.11

Table S3241. Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RBM6 MUTATED	0	10	3	1	4
RBM6 WILD-TYPE	16	52	48	64	51

Figure S1237. Get High-res Image Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RBM6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0025

Table S3242. Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RBM6 MUTATED	1	9	7	1
RBM6 WILD-TYPE	97	35	43	56

Figure S1238. Get High-res Image Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RBM6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0075

Table S3243. Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RBM6 MUTATED	10	1	1	5	0
RBM6 WILD-TYPE	52	58	39	32	59

Figure S1239. Get High-res Image Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RBM6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0025

Table S3244. Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RBM6 MUTATED	2	0	15
RBM6 WILD-TYPE	104	54	82

Figure S1240. Get High-res Image Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RBM6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.014

Table S3245. Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RBM6 MUTATED	17	2	1
RBM6 WILD-TYPE	106	93	70

Figure S1241. Get High-res Image Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RBM6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00348 (Fisher's exact test), Q value = 0.036

Table S3246. Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RBM6 MUTATED	18	1	1
RBM6 WILD-TYPE	139	62	68

Figure S1242. Get High-res Image Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RBM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.22

Table S3247. Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RBM6 MUTATED	1	3	5	2	0	0
RBM6 WILD-TYPE	32	16	54	37	16	45

'RBM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.2

Table S3248. Gene #326: 'RBM6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RBM6 MUTATED	5	0	3	1	2	0
RBM6 WILD-TYPE	42	39	32	31	21	35

'SLC26A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.24

Table S3249. Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC26A7 MUTATED	1	10	0	1	1
SLC26A7 WILD-TYPE	78	116	27	42	11

'SLC26A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.53

Table S3250. Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC26A7 MUTATED	4	6	1	1
SLC26A7 WILD-TYPE	67	70	33	62

'SLC26A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.18

Table S3251. Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC26A7 MUTATED	1	2	4	0	5
SLC26A7 WILD-TYPE	15	60	47	65	50

'SLC26A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.15

Table S3252. Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC26A7 MUTATED	3	6	2	1
SLC26A7 WILD-TYPE	95	38	48	56

Figure S1243. Get High-res Image Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC26A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00601 (Fisher's exact test), Q value = 0.05

Table S3253. Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC26A7 MUTATED	5	0	4	3	0
SLC26A7 WILD-TYPE	57	59	36	34	59

Figure S1244. Get High-res Image Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC26A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00426 (Fisher's exact test), Q value = 0.041

Table S3254. Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC26A7 MUTATED	2	0	10
SLC26A7 WILD-TYPE	104	54	87

Figure S1245. Get High-res Image Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0471 (Fisher's exact test), Q value = 0.15

Table S3255. Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC26A7 MUTATED	10	1	3
SLC26A7 WILD-TYPE	113	94	68

Figure S1246. Get High-res Image Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.36

Table S3256. Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC26A7 MUTATED	11	1	2
SLC26A7 WILD-TYPE	146	62	67

'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 0.23

Table S3257. Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC26A7 MUTATED	3	3	3	2	0	0
SLC26A7 WILD-TYPE	30	16	56	37	16	45

'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0051 (Fisher's exact test), Q value = 0.045

Table S3258. Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC26A7 MUTATED	7	0	2	0	2	0
SLC26A7 WILD-TYPE	40	39	33	32	21	35

Figure S1247. Get High-res Image Gene #327: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OR5M3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.61

Table S3259. Gene #328: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OR5M3 MUTATED	4	10	0	1	0
OR5M3 WILD-TYPE	75	116	27	42	12

'OR5M3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S3260. Gene #328: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OR5M3 MUTATED	3	8	1	1
OR5M3 WILD-TYPE	68	68	33	62

'OR5M3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.46

Table S3261. Gene #328: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OR5M3 MUTATED	0	6	3	2	1
OR5M3 WILD-TYPE	16	56	48	63	54

'OR5M3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 0.15

Table S3262. Gene #328: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OR5M3 MUTATED	2	4	5	1
OR5M3 WILD-TYPE	96	40	45	56

Figure S1248. Get High-res Image Gene #328: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OR5M3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.081

Table S3263. Gene #328: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OR5M3 MUTATED	6	0	1	5	2
OR5M3 WILD-TYPE	56	59	39	32	57

Figure S1249. Get High-res Image Gene #328: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OR5M3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.14

Table S3264. Gene #328: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OR5M3 MUTATED	3	1	10
OR5M3 WILD-TYPE	103	53	87

Figure S1250. Get High-res Image Gene #328: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OR5M3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.37

Table S3265. Gene #328: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OR5M3 MUTATED	9	2	4
OR5M3 WILD-TYPE	114	93	67

'OR5M3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.43

Table S3266. Gene #328: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OR5M3 MUTATED	11	1	3
OR5M3 WILD-TYPE	146	62	66

'OR5M3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.2

Table S3267. Gene #328: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OR5M3 MUTATED	3	1	2	5	0	0
OR5M3 WILD-TYPE	30	18	57	34	16	45

'OR5M3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.36

Table S3268. Gene #328: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OR5M3 MUTATED	4	0	1	1	3	2
OR5M3 WILD-TYPE	43	39	34	31	20	33

'MSL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.38

Table S3269. Gene #329: 'MSL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MSL3 MUTATED	1	8	1	0	0
MSL3 WILD-TYPE	78	118	26	43	12

'MSL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.25

Table S3270. Gene #329: 'MSL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MSL3 MUTATED	0	4	2	4
MSL3 WILD-TYPE	71	72	32	59

'MSL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 0.96

Table S3271. Gene #329: 'MSL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MSL3 MUTATED	1	2	2	2	2
MSL3 WILD-TYPE	15	60	49	63	53

'MSL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 0.82

Table S3272. Gene #329: 'MSL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MSL3 MUTATED	5	1	2	1
MSL3 WILD-TYPE	93	43	48	56

'MSL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S3273. Gene #329: 'MSL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MSL3 MUTATED	5	1	1	2	0
MSL3 WILD-TYPE	57	58	39	35	59

'MSL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 0.95

Table S3274. Gene #329: 'MSL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MSL3 MUTATED	3	2	4
MSL3 WILD-TYPE	103	52	93

'MSL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0993 (Fisher's exact test), Q value = 0.23

Table S3275. Gene #329: 'MSL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MSL3 MUTATED	7	3	0
MSL3 WILD-TYPE	116	92	71

'MSL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S3276. Gene #329: 'MSL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MSL3 MUTATED	7	3	0
MSL3 WILD-TYPE	150	60	69

'MSL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.78

Table S3277. Gene #329: 'MSL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MSL3 MUTATED	0	0	4	2	0	2
MSL3 WILD-TYPE	33	19	55	37	16	43

'MSL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.77

Table S3278. Gene #329: 'MSL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MSL3 MUTATED	2	2	2	2	0	0
MSL3 WILD-TYPE	45	37	33	30	23	35

'CTNNA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.24

Table S3279. Gene #330: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CTNNA1 MUTATED	1	10	0	1	1
CTNNA1 WILD-TYPE	78	116	27	42	11

'CTNNA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 0.21

Table S3280. Gene #330: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CTNNA1 MUTATED	1	7	0	4
CTNNA1 WILD-TYPE	70	69	34	59

'CTNNA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.61

Table S3281. Gene #330: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CTNNA1 MUTATED	2	3	2	2	4
CTNNA1 WILD-TYPE	14	59	49	63	51

'CTNNA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.42

Table S3282. Gene #330: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CTNNA1 MUTATED	3	5	2	3
CTNNA1 WILD-TYPE	95	39	48	54

'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.1

Table S3283. Gene #330: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CTNNA1 MUTATED	8	2	0	1	1
CTNNA1 WILD-TYPE	54	57	40	36	58

Figure S1251. Get High-res Image Gene #330: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 0.82

Table S3284. Gene #330: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CTNNA1 MUTATED	4	2	6
CTNNA1 WILD-TYPE	102	52	91

'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.55

Table S3285. Gene #330: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CTNNA1 MUTATED	7	2	4
CTNNA1 WILD-TYPE	116	93	67

'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S3286. Gene #330: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CTNNA1 MUTATED	10	2	1
CTNNA1 WILD-TYPE	147	61	68

'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 0.82

Table S3287. Gene #330: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CTNNA1 MUTATED	3	1	4	2	0	1
CTNNA1 WILD-TYPE	30	18	55	37	16	44

'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.34

Table S3288. Gene #330: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CTNNA1 MUTATED	5	1	3	2	0	0
CTNNA1 WILD-TYPE	42	38	32	30	23	35

'MMP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.34

Table S3289. Gene #331: 'MMP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MMP3 MUTATED	0	7	0	1	0
MMP3 WILD-TYPE	79	119	27	42	12

'MMP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.39

Table S3290. Gene #331: 'MMP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MMP3 MUTATED	0	4	1	2
MMP3 WILD-TYPE	71	72	33	61

'MMP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.49

Table S3291. Gene #331: 'MMP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MMP3 MUTATED	1	2	2	0	2
MMP3 WILD-TYPE	15	60	49	65	53

'MMP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00611 (Fisher's exact test), Q value = 0.05

Table S3292. Gene #331: 'MMP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MMP3 MUTATED	1	5	1	0
MMP3 WILD-TYPE	97	39	49	57

Figure S1252. Get High-res Image Gene #331: 'MMP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MMP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.015

Table S3293. Gene #331: 'MMP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MMP3 MUTATED	7	0	1	0	0
MMP3 WILD-TYPE	55	59	39	37	59

Figure S1253. Get High-res Image Gene #331: 'MMP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MMP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.41

Table S3294. Gene #331: 'MMP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MMP3 MUTATED	3	0	5
MMP3 WILD-TYPE	103	54	92

'MMP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.1

Table S3295. Gene #331: 'MMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MMP3 MUTATED	7	0	1
MMP3 WILD-TYPE	116	95	70

Figure S1254. Get High-res Image Gene #331: 'MMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MMP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.31

Table S3296. Gene #331: 'MMP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MMP3 MUTATED	7	1	0
MMP3 WILD-TYPE	150	62	69

'MMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.33

Table S3297. Gene #331: 'MMP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MMP3 MUTATED	0	0	4	3	0	0
MMP3 WILD-TYPE	33	19	55	36	16	45

'MMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.43

Table S3298. Gene #331: 'MMP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MMP3 MUTATED	2	0	3	1	1	0
MMP3 WILD-TYPE	45	39	32	31	22	35

'ALDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.29

Table S3299. Gene #332: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ALDH2 MUTATED	0	6	2	1	0
ALDH2 WILD-TYPE	79	120	25	42	12

'ALDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.18

Table S3300. Gene #332: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ALDH2 MUTATED	0	5	2	1
ALDH2 WILD-TYPE	71	71	32	62

'ALDH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.15

Table S3301. Gene #332: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ALDH2 MUTATED	2	1	3	0	2
ALDH2 WILD-TYPE	14	61	48	65	53

Figure S1255. Get High-res Image Gene #332: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ALDH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.075

Table S3302. Gene #332: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ALDH2 MUTATED	2	5	1	0
ALDH2 WILD-TYPE	96	39	49	57

Figure S1256. Get High-res Image Gene #332: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ALDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.14

Table S3303. Gene #332: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ALDH2 MUTATED	3	0	1	3	0
ALDH2 WILD-TYPE	59	59	39	34	59

Figure S1257. Get High-res Image Gene #332: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ALDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0478 (Fisher's exact test), Q value = 0.15

Table S3304. Gene #332: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ALDH2 MUTATED	1	0	6
ALDH2 WILD-TYPE	105	54	91

Figure S1258. Get High-res Image Gene #332: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.2

Table S3305. Gene #332: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ALDH2 MUTATED	7	2	0
ALDH2 WILD-TYPE	116	93	71

'ALDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S3306. Gene #332: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ALDH2 MUTATED	8	1	0
ALDH2 WILD-TYPE	149	62	69

'ALDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S3307. Gene #332: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ALDH2 MUTATED	1	1	2	2	0	1
ALDH2 WILD-TYPE	32	18	57	37	16	44

'ALDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.63

Table S3308. Gene #332: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ALDH2 MUTATED	1	1	2	1	2	0
ALDH2 WILD-TYPE	46	38	33	31	21	35

'SOS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.084

Table S3309. Gene #333: 'SOS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SOS2 MUTATED	3	15	0	0	1
SOS2 WILD-TYPE	76	111	27	43	11

Figure S1259. Get High-res Image Gene #333: 'SOS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SOS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.17

Table S3310. Gene #333: 'SOS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SOS2 MUTATED	2	10	2	2
SOS2 WILD-TYPE	69	66	32	61

'SOS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S3311. Gene #333: 'SOS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SOS2 MUTATED	2	5	4	3	3
SOS2 WILD-TYPE	14	57	47	62	52

'SOS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.25

Table S3312. Gene #333: 'SOS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SOS2 MUTATED	4	6	5	2
SOS2 WILD-TYPE	94	38	45	55

'SOS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00487 (Fisher's exact test), Q value = 0.044

Table S3313. Gene #333: 'SOS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SOS2 MUTATED	11	2	1	2	1
SOS2 WILD-TYPE	51	57	39	35	58

Figure S1260. Get High-res Image Gene #333: 'SOS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SOS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00083 (Fisher's exact test), Q value = 0.016

Table S3314. Gene #333: 'SOS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SOS2 MUTATED	1	3	13
SOS2 WILD-TYPE	105	51	84

Figure S1261. Get High-res Image Gene #333: 'SOS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SOS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 0.88

Table S3315. Gene #333: 'SOS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SOS2 MUTATED	9	5	5
SOS2 WILD-TYPE	114	90	66

'SOS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.37

Table S3316. Gene #333: 'SOS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SOS2 MUTATED	14	3	2
SOS2 WILD-TYPE	143	60	67

'SOS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.27

Table S3317. Gene #333: 'SOS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SOS2 MUTATED	1	0	4	6	0	1
SOS2 WILD-TYPE	32	19	55	33	16	44

'SOS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S3318. Gene #333: 'SOS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SOS2 MUTATED	5	1	2	1	3	0
SOS2 WILD-TYPE	42	38	33	31	20	35

'OR4K5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.81

Table S3319. Gene #334: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OR4K5 MUTATED	2	7	0	2	0
OR4K5 WILD-TYPE	77	119	27	41	12

'OR4K5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.51

Table S3320. Gene #334: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OR4K5 MUTATED	3	6	1	1
OR4K5 WILD-TYPE	68	70	33	62

'OR4K5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S3321. Gene #334: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OR4K5 MUTATED	0	3	3	0	5
OR4K5 WILD-TYPE	16	59	48	65	50

'OR4K5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00333 (Fisher's exact test), Q value = 0.036

Table S3322. Gene #334: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OR4K5 MUTATED	2	7	1	1
OR4K5 WILD-TYPE	96	37	49	56

Figure S1262. Get High-res Image Gene #334: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OR4K5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.26

Table S3323. Gene #334: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OR4K5 MUTATED	5	0	2	2	1
OR4K5 WILD-TYPE	57	59	38	35	58

'OR4K5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 0.1

Table S3324. Gene #334: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OR4K5 MUTATED	2	0	8
OR4K5 WILD-TYPE	104	54	89

Figure S1263. Get High-res Image Gene #334: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OR4K5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.09

Table S3325. Gene #334: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OR4K5 MUTATED	10	1	1
OR4K5 WILD-TYPE	113	94	70

Figure S1264. Get High-res Image Gene #334: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OR4K5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.089 (Fisher's exact test), Q value = 0.22

Table S3326. Gene #334: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OR4K5 MUTATED	10	0	2
OR4K5 WILD-TYPE	147	63	67

'OR4K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 0.93

Table S3327. Gene #334: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OR4K5 MUTATED	2	1	3	1	0	1
OR4K5 WILD-TYPE	31	18	56	38	16	44

'OR4K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.33

Table S3328. Gene #334: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OR4K5 MUTATED	5	0	1	1	0	1
OR4K5 WILD-TYPE	42	39	34	31	23	34

'PLXNA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S3329. Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLXNA2 MUTATED	3	15	2	1	1
PLXNA2 WILD-TYPE	76	111	25	42	11

'PLXNA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0863 (Fisher's exact test), Q value = 0.21

Table S3330. Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLXNA2 MUTATED	2	10	3	3
PLXNA2 WILD-TYPE	69	66	31	60

'PLXNA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00355 (Fisher's exact test), Q value = 0.037

Table S3331. Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PLXNA2 MUTATED	1	10	3	0	7
PLXNA2 WILD-TYPE	15	52	48	65	48

Figure S1265. Get High-res Image Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PLXNA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S3332. Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PLXNA2 MUTATED	3	12	6	0
PLXNA2 WILD-TYPE	95	32	44	57

Figure S1266. Get High-res Image Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLXNA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00074 (Fisher's exact test), Q value = 0.015

Table S3333. Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PLXNA2 MUTATED	11	0	1	3	2
PLXNA2 WILD-TYPE	51	59	39	34	57

Figure S1267. Get High-res Image Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PLXNA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00572 (Fisher's exact test), Q value = 0.049

Table S3334. Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PLXNA2 MUTATED	5	0	12
PLXNA2 WILD-TYPE	101	54	85

Figure S1268. Get High-res Image Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLXNA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.009

Table S3335. Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PLXNA2 MUTATED	19	2	2
PLXNA2 WILD-TYPE	104	93	69

Figure S1269. Get High-res Image Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLXNA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0196 (Fisher's exact test), Q value = 0.094

Table S3336. Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PLXNA2 MUTATED	19	2	2
PLXNA2 WILD-TYPE	138	61	67

Figure S1270. Get High-res Image Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PLXNA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.32

Table S3337. Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PLXNA2 MUTATED	4	2	7	1	0	1
PLXNA2 WILD-TYPE	29	17	52	38	16	44

'PLXNA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0507 (Fisher's exact test), Q value = 0.16

Table S3338. Gene #335: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PLXNA2 MUTATED	7	1	5	1	0	1
PLXNA2 WILD-TYPE	40	38	30	31	23	34

'C15ORF52 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S3339. Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C15ORF52 MUTATED	0	7	1	0	0
C15ORF52 WILD-TYPE	79	119	26	43	12

'C15ORF52 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00353 (Fisher's exact test), Q value = 0.037

Table S3340. Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C15ORF52 MUTATED	0	6	0	0
C15ORF52 WILD-TYPE	71	70	34	63

Figure S1271. Get High-res Image Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C15ORF52 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 0.19

Table S3341. Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C15ORF52 MUTATED	0	4	0	0	3
C15ORF52 WILD-TYPE	16	58	51	65	52

'C15ORF52 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0418 (Fisher's exact test), Q value = 0.14

Table S3342. Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C15ORF52 MUTATED	1	3	3	0
C15ORF52 WILD-TYPE	97	41	47	57

Figure S1272. Get High-res Image Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.31

Table S3343. Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C15ORF52 MUTATED	2	1	2	3	0
C15ORF52 WILD-TYPE	60	58	38	34	59

'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0788 (Fisher's exact test), Q value = 0.2

Table S3344. Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C15ORF52 MUTATED	2	0	6
C15ORF52 WILD-TYPE	104	54	91

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.13

Table S3345. Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C15ORF52 MUTATED	7	1	0
C15ORF52 WILD-TYPE	116	94	71

Figure S1273. Get High-res Image Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.15

Table S3346. Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C15ORF52 MUTATED	8	0	0
C15ORF52 WILD-TYPE	149	63	69

Figure S1274. Get High-res Image Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.11

Table S3347. Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C15ORF52 MUTATED	1	2	0	3	0	0
C15ORF52 WILD-TYPE	32	17	59	36	16	45

Figure S1275. Get High-res Image Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.097 (Fisher's exact test), Q value = 0.23

Table S3348. Gene #336: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C15ORF52 MUTATED	4	0	0	1	1	0
C15ORF52 WILD-TYPE	43	39	35	31	22	35

'CBLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.53

Table S3349. Gene #337: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CBLL1 MUTATED	1	4	0	0	1
CBLL1 WILD-TYPE	78	122	27	43	11

'CBLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.72

Table S3350. Gene #337: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CBLL1 MUTATED	1	2	1	0
CBLL1 WILD-TYPE	70	74	33	63

'CBLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.42

Table S3351. Gene #337: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CBLL1 MUTATED	0	0	3	1	2
CBLL1 WILD-TYPE	16	62	48	64	53

'CBLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.57

Table S3352. Gene #337: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CBLL1 MUTATED	2	2	0	2
CBLL1 WILD-TYPE	96	42	50	55

'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.7

Table S3353. Gene #337: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CBLL1 MUTATED	1	2	0	2	1
CBLL1 WILD-TYPE	61	57	40	35	58

'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 0.92

Table S3354. Gene #337: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CBLL1 MUTATED	2	1	3
CBLL1 WILD-TYPE	104	53	94

'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.57

Table S3355. Gene #337: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CBLL1 MUTATED	3	3	0
CBLL1 WILD-TYPE	120	92	71

'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 0.81

Table S3356. Gene #337: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CBLL1 MUTATED	3	2	1
CBLL1 WILD-TYPE	154	61	68

'CBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.72

Table S3357. Gene #337: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CBLL1 MUTATED	0	1	1	0	0	1
CBLL1 WILD-TYPE	33	18	58	39	16	44

'CBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 0.89

Table S3358. Gene #337: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CBLL1 MUTATED	1	0	0	1	0	1
CBLL1 WILD-TYPE	46	39	35	31	23	34

'KIAA1804 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.81

Table S3359. Gene #338: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1804 MUTATED	2	5	0	0	0
KIAA1804 WILD-TYPE	77	121	27	43	12

'KIAA1804 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S3360. Gene #338: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1804 MUTATED	0	4	0	1
KIAA1804 WILD-TYPE	71	72	34	62

'KIAA1804 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 0.92

Table S3361. Gene #338: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIAA1804 MUTATED	1	2	1	2	2
KIAA1804 WILD-TYPE	15	60	50	63	53

'KIAA1804 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.7

Table S3362. Gene #338: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIAA1804 MUTATED	3	3	1	1
KIAA1804 WILD-TYPE	95	41	49	56

'KIAA1804 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3363. Gene #338: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIAA1804 MUTATED	2	2	1	1	2
KIAA1804 WILD-TYPE	60	57	39	36	57

'KIAA1804 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.74

Table S3364. Gene #338: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIAA1804 MUTATED	2	2	4
KIAA1804 WILD-TYPE	104	52	93

'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.1

Table S3365. Gene #338: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIAA1804 MUTATED	7	0	1
KIAA1804 WILD-TYPE	116	95	70

Figure S1276. Get High-res Image Gene #338: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.49

Table S3366. Gene #338: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIAA1804 MUTATED	5	0	3
KIAA1804 WILD-TYPE	152	63	66

'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.43

Table S3367. Gene #338: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIAA1804 MUTATED	2	1	2	0	0	0
KIAA1804 WILD-TYPE	31	18	57	39	16	45

'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.43

Table S3368. Gene #338: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIAA1804 MUTATED	1	0	2	2	0	0
KIAA1804 WILD-TYPE	46	39	33	30	23	35

'PGBD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.083

Table S3369. Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PGBD1 MUTATED	0	10	1	0	1
PGBD1 WILD-TYPE	79	116	26	43	11

Figure S1277. Get High-res Image Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PGBD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0424 (Fisher's exact test), Q value = 0.15

Table S3370. Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PGBD1 MUTATED	1	6	1	0
PGBD1 WILD-TYPE	70	70	33	63

Figure S1278. Get High-res Image Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PGBD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.13

Table S3371. Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PGBD1 MUTATED	0	4	6	0	2
PGBD1 WILD-TYPE	16	58	45	65	53

Figure S1279. Get High-res Image Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PGBD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00115 (Fisher's exact test), Q value = 0.02

Table S3372. Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PGBD1 MUTATED	2	7	3	0
PGBD1 WILD-TYPE	96	37	47	57

Figure S1280. Get High-res Image Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PGBD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 0.16

Table S3373. Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PGBD1 MUTATED	6	1	2	1	0
PGBD1 WILD-TYPE	56	58	38	36	59

'PGBD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.1

Table S3374. Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PGBD1 MUTATED	2	0	8
PGBD1 WILD-TYPE	104	54	89

Figure S1281. Get High-res Image Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PGBD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.092

Table S3375. Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PGBD1 MUTATED	10	1	1
PGBD1 WILD-TYPE	113	94	70

Figure S1282. Get High-res Image Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PGBD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.1

Table S3376. Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PGBD1 MUTATED	11	1	0
PGBD1 WILD-TYPE	146	62	69

Figure S1283. Get High-res Image Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PGBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.42

Table S3377. Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PGBD1 MUTATED	0	1	4	2	0	0
PGBD1 WILD-TYPE	33	18	55	37	16	45

'PGBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.25

Table S3378. Gene #339: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PGBD1 MUTATED	3	0	3	0	1	0
PGBD1 WILD-TYPE	44	39	32	32	22	35

'ADAMTSL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.098

Table S3379. Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ADAMTSL4 MUTATED	0	11	2	1	1
ADAMTSL4 WILD-TYPE	79	115	25	42	11

Figure S1284. Get High-res Image Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADAMTSL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00888 (Fisher's exact test), Q value = 0.062

Table S3380. Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ADAMTSL4 MUTATED	0	7	3	1
ADAMTSL4 WILD-TYPE	71	69	31	62

Figure S1285. Get High-res Image Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADAMTSL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0955 (Fisher's exact test), Q value = 0.23

Table S3381. Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ADAMTSL4 MUTATED	1	5	4	0	2
ADAMTSL4 WILD-TYPE	15	57	47	65	53

'ADAMTSL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00271 (Fisher's exact test), Q value = 0.032

Table S3382. Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ADAMTSL4 MUTATED	4	7	1	0
ADAMTSL4 WILD-TYPE	94	37	49	57

Figure S1286. Get High-res Image Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ADAMTSL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00359 (Fisher's exact test), Q value = 0.037

Table S3383. Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ADAMTSL4 MUTATED	6	0	2	4	0
ADAMTSL4 WILD-TYPE	56	59	38	33	59

Figure S1287. Get High-res Image Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ADAMTSL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.008

Table S3384. Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ADAMTSL4 MUTATED	1	0	11
ADAMTSL4 WILD-TYPE	105	54	86

Figure S1288. Get High-res Image Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ADAMTSL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.007

Table S3385. Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ADAMTSL4 MUTATED	14	1	0
ADAMTSL4 WILD-TYPE	109	94	71

Figure S1289. Get High-res Image Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADAMTSL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 0.14

Table S3386. Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ADAMTSL4 MUTATED	13	1	1
ADAMTSL4 WILD-TYPE	144	62	68

Figure S1290. Get High-res Image Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ADAMTSL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.7

Table S3387. Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ADAMTSL4 MUTATED	2	2	4	1	0	1
ADAMTSL4 WILD-TYPE	31	17	55	38	16	44

'ADAMTSL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.25

Table S3388. Gene #340: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ADAMTSL4 MUTATED	4	1	4	0	1	0
ADAMTSL4 WILD-TYPE	43	38	31	32	22	35

'HTR1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.24

Table S3389. Gene #341: 'HTR1E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HTR1E MUTATED	0	6	0	2	1
HTR1E WILD-TYPE	79	120	27	41	11

'HTR1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0454 (Fisher's exact test), Q value = 0.15

Table S3390. Gene #341: 'HTR1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HTR1E MUTATED	2	6	0	0
HTR1E WILD-TYPE	69	70	34	63

Figure S1291. Get High-res Image Gene #341: 'HTR1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HTR1E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.37

Table S3391. Gene #341: 'HTR1E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HTR1E MUTATED	0	4	3	0	2
HTR1E WILD-TYPE	16	58	48	65	53

'HTR1E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0901 (Fisher's exact test), Q value = 0.22

Table S3392. Gene #341: 'HTR1E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HTR1E MUTATED	3	4	2	0
HTR1E WILD-TYPE	95	40	48	57

'HTR1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0815 (Fisher's exact test), Q value = 0.21

Table S3393. Gene #341: 'HTR1E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HTR1E MUTATED	3	0	2	0	0
HTR1E WILD-TYPE	59	59	38	37	59

'HTR1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S3394. Gene #341: 'HTR1E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HTR1E MUTATED	1	0	4
HTR1E WILD-TYPE	105	54	93

'HTR1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.13

Table S3395. Gene #341: 'HTR1E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HTR1E MUTATED	7	0	2
HTR1E WILD-TYPE	116	95	69

Figure S1292. Get High-res Image Gene #341: 'HTR1E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HTR1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.28

Table S3396. Gene #341: 'HTR1E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HTR1E MUTATED	8	0	1
HTR1E WILD-TYPE	149	63	68

'HTR1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.56

Table S3397. Gene #341: 'HTR1E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HTR1E MUTATED	1	1	2	3	0	0
HTR1E WILD-TYPE	32	18	57	36	16	45

'HTR1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.52

Table S3398. Gene #341: 'HTR1E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HTR1E MUTATED	2	0	1	3	0	1
HTR1E WILD-TYPE	45	39	34	29	23	34

'UGP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S3399. Gene #342: 'UGP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
UGP2 MUTATED	0	7	0	0	0
UGP2 WILD-TYPE	79	119	27	43	12

'UGP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.16

Table S3400. Gene #342: 'UGP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
UGP2 MUTATED	0	5	0	1
UGP2 WILD-TYPE	71	71	34	62

'UGP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S3401. Gene #342: 'UGP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
UGP2 MUTATED	0	4	0	0	2
UGP2 WILD-TYPE	16	58	51	65	53

'UGP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00616 (Fisher's exact test), Q value = 0.051

Table S3402. Gene #342: 'UGP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
UGP2 MUTATED	0	3	3	0
UGP2 WILD-TYPE	98	41	47	57

Figure S1293. Get High-res Image Gene #342: 'UGP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UGP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00621 (Fisher's exact test), Q value = 0.051

Table S3403. Gene #342: 'UGP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
UGP2 MUTATED	5	0	0	0	0
UGP2 WILD-TYPE	57	59	40	37	59

Figure S1294. Get High-res Image Gene #342: 'UGP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'UGP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S3404. Gene #342: 'UGP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
UGP2 MUTATED	1	0	4
UGP2 WILD-TYPE	105	54	93

'UGP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.86

Table S3405. Gene #342: 'UGP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
UGP2 MUTATED	4	2	1
UGP2 WILD-TYPE	119	93	70

'UGP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.54

Table S3406. Gene #342: 'UGP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
UGP2 MUTATED	5	2	0
UGP2 WILD-TYPE	152	61	69

'UGP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.57

Table S3407. Gene #342: 'UGP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
UGP2 MUTATED	1	0	2	3	0	0
UGP2 WILD-TYPE	32	19	57	36	16	45

'UGP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.63

Table S3408. Gene #342: 'UGP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
UGP2 MUTATED	2	0	2	1	1	0
UGP2 WILD-TYPE	45	39	33	31	22	35

'PFKP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.4

Table S3409. Gene #343: 'PFKP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PFKP MUTATED	1	9	0	2	0
PFKP WILD-TYPE	78	117	27	41	12

'PFKP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.28

Table S3410. Gene #343: 'PFKP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PFKP MUTATED	1	4	2	0
PFKP WILD-TYPE	70	72	32	63

'PFKP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 0.21

Table S3411. Gene #343: 'PFKP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PFKP MUTATED	0	5	3	0	1
PFKP WILD-TYPE	16	57	48	65	54

'PFKP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00689 (Fisher's exact test), Q value = 0.054

Table S3412. Gene #343: 'PFKP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PFKP MUTATED	1	4	4	0
PFKP WILD-TYPE	97	40	46	57

Figure S1295. Get High-res Image Gene #343: 'PFKP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PFKP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.39

Table S3413. Gene #343: 'PFKP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PFKP MUTATED	3	1	2	4	1
PFKP WILD-TYPE	59	58	38	33	58

'PFKP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.61

Table S3414. Gene #343: 'PFKP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PFKP MUTATED	4	1	6
PFKP WILD-TYPE	102	53	91

'PFKP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 0.23

Table S3415. Gene #343: 'PFKP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PFKP MUTATED	9	2	1
PFKP WILD-TYPE	114	93	70

'PFKP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0282 (Fisher's exact test), Q value = 0.11

Table S3416. Gene #343: 'PFKP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PFKP MUTATED	11	0	1
PFKP WILD-TYPE	146	63	68

Figure S1296. Get High-res Image Gene #343: 'PFKP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PFKP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 0.2

Table S3417. Gene #343: 'PFKP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PFKP MUTATED	1	1	0	3	0	0
PFKP WILD-TYPE	32	18	59	36	16	45

'PFKP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.1

Table S3418. Gene #343: 'PFKP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PFKP MUTATED	1	0	0	0	3	1
PFKP WILD-TYPE	46	39	35	32	20	34

Figure S1297. Get High-res Image Gene #343: 'PFKP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EDNRB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.51

Table S3419. Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EDNRB MUTATED	3	14	3	4	1
EDNRB WILD-TYPE	76	112	24	39	11

'EDNRB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00281 (Fisher's exact test), Q value = 0.033

Table S3420. Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EDNRB MUTATED	2	12	1	1
EDNRB WILD-TYPE	69	64	33	62

Figure S1298. Get High-res Image Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EDNRB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S3421. Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EDNRB MUTATED	3	7	6	2	6
EDNRB WILD-TYPE	13	55	45	63	49

'EDNRB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S3422. Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EDNRB MUTATED	7	14	2	1
EDNRB WILD-TYPE	91	30	48	56

Figure S1299. Get High-res Image Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EDNRB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00309 (Fisher's exact test), Q value = 0.034

Table S3423. Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EDNRB MUTATED	8	0	3	7	3
EDNRB WILD-TYPE	54	59	37	30	56

Figure S1300. Get High-res Image Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EDNRB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.083

Table S3424. Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EDNRB MUTATED	6	1	14
EDNRB WILD-TYPE	100	53	83

Figure S1301. Get High-res Image Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EDNRB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00115 (Fisher's exact test), Q value = 0.02

Table S3425. Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EDNRB MUTATED	19	2	4
EDNRB WILD-TYPE	104	93	67

Figure S1302. Get High-res Image Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EDNRB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.081

Table S3426. Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EDNRB MUTATED	20	1	4
EDNRB WILD-TYPE	137	62	65

Figure S1303. Get High-res Image Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EDNRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.26

Table S3427. Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EDNRB MUTATED	1	4	6	2	1	1
EDNRB WILD-TYPE	32	15	53	37	15	44

'EDNRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.33

Table S3428. Gene #344: 'EDNRB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EDNRB MUTATED	7	2	3	2	1	0
EDNRB WILD-TYPE	40	37	32	30	22	35

'ISG20L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.25

Table S3429. Gene #345: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ISG20L2 MUTATED	0	7	0	0	0
ISG20L2 WILD-TYPE	79	119	27	43	12

'ISG20L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.63

Table S3430. Gene #345: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ISG20L2 MUTATED	1	4	1	1
ISG20L2 WILD-TYPE	70	72	33	62

'ISG20L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S3431. Gene #345: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ISG20L2 MUTATED	1	1	3	0	1
ISG20L2 WILD-TYPE	15	61	48	65	54

'ISG20L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S3432. Gene #345: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ISG20L2 MUTATED	3	2	1	0
ISG20L2 WILD-TYPE	95	42	49	57

'ISG20L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.14

Table S3433. Gene #345: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ISG20L2 MUTATED	4	0	2	0	0
ISG20L2 WILD-TYPE	58	59	38	37	59

Figure S1304. Get High-res Image Gene #345: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ISG20L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S3434. Gene #345: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ISG20L2 MUTATED	1	0	5
ISG20L2 WILD-TYPE	105	54	92

'ISG20L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00743 (Fisher's exact test), Q value = 0.056

Table S3435. Gene #345: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ISG20L2 MUTATED	7	0	0
ISG20L2 WILD-TYPE	116	95	71

Figure S1305. Get High-res Image Gene #345: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ISG20L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 0.19

Table S3436. Gene #345: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ISG20L2 MUTATED	7	0	0
ISG20L2 WILD-TYPE	150	63	69

'ISG20L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.69

Table S3437. Gene #345: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ISG20L2 MUTATED	1	1	3	2	0	0
ISG20L2 WILD-TYPE	32	18	56	37	16	45

'ISG20L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.43

Table S3438. Gene #345: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ISG20L2 MUTATED	2	0	3	1	1	0
ISG20L2 WILD-TYPE	45	39	32	31	22	35

'MAMSTR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S3439. Gene #346: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAMSTR MUTATED	0	4	0	0	0
MAMSTR WILD-TYPE	79	122	27	43	12

'MAMSTR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.78

Table S3440. Gene #346: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAMSTR MUTATED	1	1	1	0
MAMSTR WILD-TYPE	70	75	33	63

'MAMSTR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.77

Table S3441. Gene #346: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MAMSTR MUTATED	0	2	1	0	1
MAMSTR WILD-TYPE	16	60	50	65	54

'MAMSTR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00926 (Fisher's exact test), Q value = 0.064

Table S3442. Gene #346: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MAMSTR MUTATED	0	3	1	0
MAMSTR WILD-TYPE	98	41	49	57

Figure S1306. Get High-res Image Gene #346: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAMSTR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.45

Table S3443. Gene #346: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MAMSTR MUTATED	2	0	1	0	0
MAMSTR WILD-TYPE	60	59	39	37	59

'MAMSTR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S3444. Gene #346: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MAMSTR MUTATED	0	0	3
MAMSTR WILD-TYPE	106	54	94

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0897 (Fisher's exact test), Q value = 0.22

Table S3445. Gene #346: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MAMSTR MUTATED	4	0	0
MAMSTR WILD-TYPE	119	95	71

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.56

Table S3446. Gene #346: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MAMSTR MUTATED	4	0	0
MAMSTR WILD-TYPE	153	63	69

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.51

Table S3447. Gene #346: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MAMSTR MUTATED	0	1	2	0	0	0
MAMSTR WILD-TYPE	33	18	57	39	16	45

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.71

Table S3448. Gene #346: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MAMSTR MUTATED	2	0	1	0	0	0
MAMSTR WILD-TYPE	45	39	34	32	23	35

'UHRF1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00102 (Fisher's exact test), Q value = 0.018

Table S3449. Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
UHRF1BP1 MUTATED	0	14	0	0	1
UHRF1BP1 WILD-TYPE	79	112	27	43	11

Figure S1307. Get High-res Image Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00668 (Fisher's exact test), Q value = 0.053

Table S3450. Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
UHRF1BP1 MUTATED	0	9	2	2
UHRF1BP1 WILD-TYPE	71	67	32	61

Figure S1308. Get High-res Image Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.44

Table S3451. Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
UHRF1BP1 MUTATED	0	6	2	1	3
UHRF1BP1 WILD-TYPE	16	56	49	64	52

'UHRF1BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0012 (Fisher's exact test), Q value = 0.02

Table S3452. Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
UHRF1BP1 MUTATED	0	4	6	2
UHRF1BP1 WILD-TYPE	98	40	44	55

Figure S1309. Get High-res Image Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UHRF1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00282 (Fisher's exact test), Q value = 0.033

Table S3453. Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
UHRF1BP1 MUTATED	7	0	3	3	0
UHRF1BP1 WILD-TYPE	55	59	37	34	59

Figure S1310. Get High-res Image Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 0.18

Table S3454. Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
UHRF1BP1 MUTATED	5	0	8
UHRF1BP1 WILD-TYPE	101	54	89

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.077

Table S3455. Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
UHRF1BP1 MUTATED	12	2	1
UHRF1BP1 WILD-TYPE	111	93	70

Figure S1311. Get High-res Image Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.082

Table S3456. Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
UHRF1BP1 MUTATED	13	2	0
UHRF1BP1 WILD-TYPE	144	61	69

Figure S1312. Get High-res Image Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00318 (Fisher's exact test), Q value = 0.035

Table S3457. Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
UHRF1BP1 MUTATED	1	3	8	0	0	0
UHRF1BP1 WILD-TYPE	32	16	51	39	16	45

Figure S1313. Get High-res Image Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00337 (Fisher's exact test), Q value = 0.036

Table S3458. Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
UHRF1BP1 MUTATED	3	0	7	1	1	0
UHRF1BP1 WILD-TYPE	44	39	28	31	22	35

Figure S1314. Get High-res Image Gene #347: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM70B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.15

Table S3459. Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM70B MUTATED	0	9	2	1	1
FAM70B WILD-TYPE	79	117	25	42	11

Figure S1315. Get High-res Image Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM70B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00229 (Fisher's exact test), Q value = 0.03

Table S3460. Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM70B MUTATED	0	8	0	1
FAM70B WILD-TYPE	71	68	34	62

Figure S1316. Get High-res Image Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM70B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.38

Table S3461. Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FAM70B MUTATED	2	4	1	1	3
FAM70B WILD-TYPE	14	58	50	64	52

'FAM70B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S3462. Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FAM70B MUTATED	3	5	2	1
FAM70B WILD-TYPE	95	39	48	56

'FAM70B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.14

Table S3463. Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FAM70B MUTATED	5	1	2	4	0
FAM70B WILD-TYPE	57	58	38	33	59

Figure S1317. Get High-res Image Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM70B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00476 (Fisher's exact test), Q value = 0.043

Table S3464. Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FAM70B MUTATED	1	1	10
FAM70B WILD-TYPE	105	53	87

Figure S1318. Get High-res Image Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM70B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00907 (Fisher's exact test), Q value = 0.063

Table S3465. Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FAM70B MUTATED	11	1	1
FAM70B WILD-TYPE	112	94	70

Figure S1319. Get High-res Image Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM70B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.075

Table S3466. Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FAM70B MUTATED	12	1	0
FAM70B WILD-TYPE	145	62	69

Figure S1320. Get High-res Image Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM70B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.47

Table S3467. Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FAM70B MUTATED	1	2	3	1	0	0
FAM70B WILD-TYPE	32	17	56	38	16	45

'FAM70B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S3468. Gene #348: 'FAM70B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FAM70B MUTATED	4	0	2	1	0	0
FAM70B WILD-TYPE	43	39	33	31	23	35

'SEC24C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S3469. Gene #349: 'SEC24C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SEC24C MUTATED	1	4	1	1	2
SEC24C WILD-TYPE	78	122	26	42	10

'SEC24C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.04 (Fisher's exact test), Q value = 0.14

Table S3470. Gene #349: 'SEC24C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SEC24C MUTATED	1	7	0	1
SEC24C WILD-TYPE	70	69	34	62

Figure S1321. Get High-res Image Gene #349: 'SEC24C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SEC24C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.37

Table S3471. Gene #349: 'SEC24C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SEC24C MUTATED	1	1	2	0	2
SEC24C WILD-TYPE	15	61	49	65	53

'SEC24C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.24

Table S3472. Gene #349: 'SEC24C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SEC24C MUTATED	3	3	0	0
SEC24C WILD-TYPE	95	41	50	57

'SEC24C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 0.14

Table S3473. Gene #349: 'SEC24C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SEC24C MUTATED	3	0	2	3	0
SEC24C WILD-TYPE	59	59	38	34	59

Figure S1322. Get High-res Image Gene #349: 'SEC24C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SEC24C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00087 (Fisher's exact test), Q value = 0.017

Table S3474. Gene #349: 'SEC24C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SEC24C MUTATED	0	0	8
SEC24C WILD-TYPE	106	54	89

Figure S1323. Get High-res Image Gene #349: 'SEC24C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SEC24C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.07

Table S3475. Gene #349: 'SEC24C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SEC24C MUTATED	9	1	0
SEC24C WILD-TYPE	114	94	71

Figure S1324. Get High-res Image Gene #349: 'SEC24C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SEC24C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 0.17

Table S3476. Gene #349: 'SEC24C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SEC24C MUTATED	9	1	0
SEC24C WILD-TYPE	148	62	69

'SEC24C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.39

Table S3477. Gene #349: 'SEC24C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SEC24C MUTATED	1	1	4	0	0	0
SEC24C WILD-TYPE	32	18	55	39	16	45

'SEC24C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0736 (Fisher's exact test), Q value = 0.2

Table S3478. Gene #349: 'SEC24C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SEC24C MUTATED	3	0	3	0	0	0
SEC24C WILD-TYPE	44	39	32	32	23	35

'CEP57 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 0.2

Table S3479. Gene #350: 'CEP57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CEP57 MUTATED	0	6	0	0	1
CEP57 WILD-TYPE	79	120	27	43	11

'CEP57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.49

Table S3480. Gene #350: 'CEP57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CEP57 MUTATED	0	3	1	1
CEP57 WILD-TYPE	71	73	33	62

'CEP57 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0584 (Fisher's exact test), Q value = 0.17

Table S3481. Gene #350: 'CEP57 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CEP57 MUTATED	1	4	0	0	2
CEP57 WILD-TYPE	15	58	51	65	53

'CEP57 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 0.14

Table S3482. Gene #350: 'CEP57 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CEP57 MUTATED	1	3	3	0
CEP57 WILD-TYPE	97	41	47	57

Figure S1325. Get High-res Image Gene #350: 'CEP57 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CEP57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.08

Table S3483. Gene #350: 'CEP57 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CEP57 MUTATED	3	0	0	3	0
CEP57 WILD-TYPE	59	59	40	34	59

Figure S1326. Get High-res Image Gene #350: 'CEP57 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CEP57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S3484. Gene #350: 'CEP57 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CEP57 MUTATED	1	0	5
CEP57 WILD-TYPE	105	54	92

'CEP57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.16

Table S3485. Gene #350: 'CEP57 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CEP57 MUTATED	6	0	1
CEP57 WILD-TYPE	117	95	70

'CEP57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.069 (Fisher's exact test), Q value = 0.19

Table S3486. Gene #350: 'CEP57 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CEP57 MUTATED	7	0	0
CEP57 WILD-TYPE	150	63	69

'CEP57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.68

Table S3487. Gene #350: 'CEP57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CEP57 MUTATED	0	0	3	1	0	0
CEP57 WILD-TYPE	33	19	56	38	16	45

'CEP57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.46

Table S3488. Gene #350: 'CEP57 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CEP57 MUTATED	1	0	2	0	1	0
CEP57 WILD-TYPE	46	39	33	32	22	35

'MAP7D3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.092

Table S3489. Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAP7D3 MUTATED	1	14	0	1	0
MAP7D3 WILD-TYPE	78	112	27	42	12

Figure S1327. Get High-res Image Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP7D3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.11

Table S3490. Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAP7D3 MUTATED	2	7	3	0
MAP7D3 WILD-TYPE	69	69	31	63

Figure S1328. Get High-res Image Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP7D3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.52

Table S3491. Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MAP7D3 MUTATED	0	4	2	2	6
MAP7D3 WILD-TYPE	16	58	49	63	49

'MAP7D3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0051

Table S3492. Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MAP7D3 MUTATED	0	8	3	3
MAP7D3 WILD-TYPE	98	36	47	54

Figure S1329. Get High-res Image Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.13

Table S3493. Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MAP7D3 MUTATED	9	2	1	2	1
MAP7D3 WILD-TYPE	53	57	39	35	58

Figure S1330. Get High-res Image Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.1

Table S3494. Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MAP7D3 MUTATED	5	0	10
MAP7D3 WILD-TYPE	101	54	87

Figure S1331. Get High-res Image Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.081

Table S3495. Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MAP7D3 MUTATED	12	1	3
MAP7D3 WILD-TYPE	111	94	68

Figure S1332. Get High-res Image Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00267 (Fisher's exact test), Q value = 0.032

Table S3496. Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MAP7D3 MUTATED	15	0	1
MAP7D3 WILD-TYPE	142	63	68

Figure S1333. Get High-res Image Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.42

Table S3497. Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MAP7D3 MUTATED	3	1	2	3	1	0
MAP7D3 WILD-TYPE	30	18	57	36	15	45

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.51

Table S3498. Gene #351: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MAP7D3 MUTATED	4	0	1	2	2	1
MAP7D3 WILD-TYPE	43	39	34	30	21	34

'CCDC148 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.59

Table S3499. Gene #352: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CCDC148 MUTATED	0	3	1	1	0
CCDC148 WILD-TYPE	79	123	26	42	12

'CCDC148 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S3500. Gene #352: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CCDC148 MUTATED	0	4	0	1
CCDC148 WILD-TYPE	71	72	34	62

'CCDC148 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.55

Table S3501. Gene #352: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CCDC148 MUTATED	1	0	1	1	1
CCDC148 WILD-TYPE	15	62	50	64	54

'CCDC148 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.46

Table S3502. Gene #352: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CCDC148 MUTATED	1	2	0	1
CCDC148 WILD-TYPE	97	42	50	56

'CCDC148 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.49

Table S3503. Gene #352: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CCDC148 MUTATED	2	0	1	1	0
CCDC148 WILD-TYPE	60	59	39	36	59

'CCDC148 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S3504. Gene #352: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CCDC148 MUTATED	0	1	3
CCDC148 WILD-TYPE	106	53	94

'CCDC148 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.12

Table S3505. Gene #352: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CCDC148 MUTATED	5	0	0
CCDC148 WILD-TYPE	118	95	71

Figure S1334. Get High-res Image Gene #352: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC148 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.63

Table S3506. Gene #352: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CCDC148 MUTATED	4	1	0
CCDC148 WILD-TYPE	153	62	69

'CCDC148 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.57

Table S3507. Gene #352: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CCDC148 MUTATED	1	1	2	0	0	0
CCDC148 WILD-TYPE	32	18	57	39	16	45

'CCDC148 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.46

Table S3508. Gene #352: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CCDC148 MUTATED	2	0	2	0	0	0
CCDC148 WILD-TYPE	45	39	33	32	23	35

'HAUS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.31

Table S3509. Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HAUS6 MUTATED	1	9	1	0	0
HAUS6 WILD-TYPE	78	117	26	43	12

'HAUS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.14

Table S3510. Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HAUS6 MUTATED	1	7	0	1
HAUS6 WILD-TYPE	70	69	34	62

Figure S1335. Get High-res Image Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HAUS6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 0.2

Table S3511. Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HAUS6 MUTATED	2	3	2	0	4
HAUS6 WILD-TYPE	14	59	49	65	51

'HAUS6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00068 (Fisher's exact test), Q value = 0.014

Table S3512. Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HAUS6 MUTATED	4	7	0	0
HAUS6 WILD-TYPE	94	37	50	57

Figure S1336. Get High-res Image Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HAUS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.35

Table S3513. Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HAUS6 MUTATED	4	0	2	2	1
HAUS6 WILD-TYPE	58	59	38	35	58

'HAUS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0421 (Fisher's exact test), Q value = 0.14

Table S3514. Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HAUS6 MUTATED	2	0	7
HAUS6 WILD-TYPE	104	54	90

Figure S1337. Get High-res Image Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HAUS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00859 (Fisher's exact test), Q value = 0.062

Table S3515. Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HAUS6 MUTATED	9	0	2
HAUS6 WILD-TYPE	114	95	69

Figure S1338. Get High-res Image Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HAUS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.15

Table S3516. Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HAUS6 MUTATED	10	0	1
HAUS6 WILD-TYPE	147	63	68

Figure S1339. Get High-res Image Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HAUS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.43

Table S3517. Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HAUS6 MUTATED	3	0	4	2	0	0
HAUS6 WILD-TYPE	30	19	55	37	16	45

'HAUS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.34

Table S3518. Gene #353: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HAUS6 MUTATED	2	0	4	2	0	1
HAUS6 WILD-TYPE	45	39	31	30	23	34

'TMEM55A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.72

Table S3519. Gene #354: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TMEM55A MUTATED	0	2	0	1	0
TMEM55A WILD-TYPE	79	124	27	42	12

'TMEM55A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 0.83

Table S3520. Gene #354: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TMEM55A MUTATED	0	1	1	0	1
TMEM55A WILD-TYPE	16	61	50	65	54

'TMEM55A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.36

Table S3521. Gene #354: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TMEM55A MUTATED	1	2	0	0
TMEM55A WILD-TYPE	97	42	50	57

'TMEM55A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.72

Table S3522. Gene #354: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TMEM55A MUTATED	2	1	0	0	0
TMEM55A WILD-TYPE	60	58	40	37	59

'TMEM55A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.47

Table S3523. Gene #354: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TMEM55A MUTATED	0	1	2
TMEM55A WILD-TYPE	106	53	95

'TMEM55A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 0.85

Table S3524. Gene #354: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TMEM55A MUTATED	2	1	0
TMEM55A WILD-TYPE	121	94	71

'TMEM55A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 0.85

Table S3525. Gene #354: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TMEM55A MUTATED	2	1	0
TMEM55A WILD-TYPE	155	62	69

'GNAZ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00513 (Fisher's exact test), Q value = 0.045

Table S3526. Gene #355: 'GNAZ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GNAZ MUTATED	0	11	0	1	2
GNAZ WILD-TYPE	79	115	27	42	10

Figure S1340. Get High-res Image Gene #355: 'GNAZ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GNAZ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.48

Table S3527. Gene #355: 'GNAZ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GNAZ MUTATED	2	6	3	2
GNAZ WILD-TYPE	69	70	31	61

'GNAZ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.72

Table S3528. Gene #355: 'GNAZ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GNAZ MUTATED	1	3	3	1	3
GNAZ WILD-TYPE	15	59	48	64	52

'GNAZ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.42

Table S3529. Gene #355: 'GNAZ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GNAZ MUTATED	3	4	3	1
GNAZ WILD-TYPE	95	40	47	56

'GNAZ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.37

Table S3530. Gene #355: 'GNAZ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GNAZ MUTATED	7	3	2	1	1
GNAZ WILD-TYPE	55	56	38	36	58

'GNAZ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.083

Table S3531. Gene #355: 'GNAZ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GNAZ MUTATED	4	0	10
GNAZ WILD-TYPE	102	54	87

Figure S1341. Get High-res Image Gene #355: 'GNAZ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GNAZ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 0.19

Table S3532. Gene #355: 'GNAZ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GNAZ MUTATED	11	2	2
GNAZ WILD-TYPE	112	93	69

'GNAZ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S3533. Gene #355: 'GNAZ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GNAZ MUTATED	12	1	2
GNAZ WILD-TYPE	145	62	67

'GNAZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 0.92

Table S3534. Gene #355: 'GNAZ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GNAZ MUTATED	2	1	3	3	1	1
GNAZ WILD-TYPE	31	18	56	36	15	44

'GNAZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S3535. Gene #355: 'GNAZ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GNAZ MUTATED	4	0	3	0	2	2
GNAZ WILD-TYPE	43	39	32	32	21	33

'YBX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.7

Table S3536. Gene #356: 'YBX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
YBX2 MUTATED	0	3	0	1	0
YBX2 WILD-TYPE	79	123	27	42	12

'YBX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.29

Table S3537. Gene #356: 'YBX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
YBX2 MUTATED	0	3	0	0
YBX2 WILD-TYPE	71	73	34	63

'YBX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.64

Table S3538. Gene #356: 'YBX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
YBX2 MUTATED	0	1	2	0	1
YBX2 WILD-TYPE	16	61	49	65	54

'YBX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 0.83

Table S3539. Gene #356: 'YBX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
YBX2 MUTATED	2	1	1	0
YBX2 WILD-TYPE	96	43	49	57

'YBX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.42

Table S3540. Gene #356: 'YBX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
YBX2 MUTATED	2	0	0	1	0
YBX2 WILD-TYPE	60	59	40	36	59

'YBX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S3541. Gene #356: 'YBX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
YBX2 MUTATED	0	0	3
YBX2 WILD-TYPE	106	54	94

'YBX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0912 (Fisher's exact test), Q value = 0.22

Table S3542. Gene #356: 'YBX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
YBX2 MUTATED	4	0	0
YBX2 WILD-TYPE	119	95	71

'YBX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.56

Table S3543. Gene #356: 'YBX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
YBX2 MUTATED	4	0	0
YBX2 WILD-TYPE	153	63	69

'YBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 0.17

Table S3544. Gene #356: 'YBX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
YBX2 MUTATED	2	1	0	0	0	0
YBX2 WILD-TYPE	31	18	59	39	16	45

'YBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0844 (Fisher's exact test), Q value = 0.21

Table S3545. Gene #356: 'YBX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
YBX2 MUTATED	3	0	0	0	0	0
YBX2 WILD-TYPE	44	39	35	32	23	35

'C12ORF51 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.0079

Table S3546. Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C12ORF51 MUTATED	1	21	4	1	3
C12ORF51 WILD-TYPE	78	105	23	42	9

Figure S1342. Get High-res Image Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C12ORF51 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0033

Table S3547. Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C12ORF51 MUTATED	2	17	3	1
C12ORF51 WILD-TYPE	69	59	31	62

Figure S1343. Get High-res Image Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C12ORF51 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S3548. Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C12ORF51 MUTATED	0	9	8	4	5
C12ORF51 WILD-TYPE	16	53	43	61	50

'C12ORF51 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00106 (Fisher's exact test), Q value = 0.019

Table S3549. Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C12ORF51 MUTATED	3	11	6	6
C12ORF51 WILD-TYPE	95	33	44	51

Figure S1344. Get High-res Image Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C12ORF51 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.089

Table S3550. Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C12ORF51 MUTATED	12	6	4	2	1
C12ORF51 WILD-TYPE	50	53	36	35	58

Figure S1345. Get High-res Image Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C12ORF51 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.088

Table S3551. Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C12ORF51 MUTATED	5	4	16
C12ORF51 WILD-TYPE	101	50	81

Figure S1346. Get High-res Image Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.11

Table S3552. Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C12ORF51 MUTATED	20	6	4
C12ORF51 WILD-TYPE	103	89	67

Figure S1347. Get High-res Image Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0704 (Fisher's exact test), Q value = 0.19

Table S3553. Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C12ORF51 MUTATED	22	5	3
C12ORF51 WILD-TYPE	135	58	66

'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.55

Table S3554. Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C12ORF51 MUTATED	2	3	9	4	0	3
C12ORF51 WILD-TYPE	31	16	50	35	16	42

'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.69

Table S3555. Gene #357: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C12ORF51 MUTATED	5	3	5	4	3	1
C12ORF51 WILD-TYPE	42	36	30	28	20	34

'TACC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.12

Table S3556. Gene #358: 'TACC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TACC2 MUTATED	5	20	1	1	2
TACC2 WILD-TYPE	74	106	26	42	10

Figure S1348. Get High-res Image Gene #358: 'TACC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TACC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S3557. Gene #358: 'TACC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TACC2 MUTATED	4	10	4	3
TACC2 WILD-TYPE	67	66	30	60

'TACC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0812 (Fisher's exact test), Q value = 0.21

Table S3558. Gene #358: 'TACC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TACC2 MUTATED	2	9	3	2	8
TACC2 WILD-TYPE	14	53	48	63	47

'TACC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S3559. Gene #358: 'TACC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TACC2 MUTATED	8	8	5	3
TACC2 WILD-TYPE	90	36	45	54

'TACC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00387 (Fisher's exact test), Q value = 0.039

Table S3560. Gene #358: 'TACC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TACC2 MUTATED	14	2	1	3	5
TACC2 WILD-TYPE	48	57	39	34	54

Figure S1349. Get High-res Image Gene #358: 'TACC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TACC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00296 (Fisher's exact test), Q value = 0.034

Table S3561. Gene #358: 'TACC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TACC2 MUTATED	10	0	15
TACC2 WILD-TYPE	96	54	82

Figure S1350. Get High-res Image Gene #358: 'TACC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TACC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00759 (Fisher's exact test), Q value = 0.057

Table S3562. Gene #358: 'TACC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TACC2 MUTATED	21	5	4
TACC2 WILD-TYPE	102	90	67

Figure S1351. Get High-res Image Gene #358: 'TACC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TACC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.52

Table S3563. Gene #358: 'TACC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TACC2 MUTATED	20	4	6
TACC2 WILD-TYPE	137	59	63

'TACC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.44

Table S3564. Gene #358: 'TACC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TACC2 MUTATED	5	1	8	4	1	1
TACC2 WILD-TYPE	28	18	51	35	15	44

'TACC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0743 (Fisher's exact test), Q value = 0.2

Table S3565. Gene #358: 'TACC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TACC2 MUTATED	8	1	6	3	1	1
TACC2 WILD-TYPE	39	38	29	29	22	34

'PIAS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.49

Table S3566. Gene #359: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIAS1 MUTATED	1	8	0	1	0
PIAS1 WILD-TYPE	78	118	27	42	12

'PIAS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.64

Table S3567. Gene #359: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIAS1 MUTATED	1	4	2	2
PIAS1 WILD-TYPE	70	72	32	61

'PIAS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.3

Table S3568. Gene #359: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PIAS1 MUTATED	1	4	2	0	1
PIAS1 WILD-TYPE	15	58	49	65	54

'PIAS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0537 (Fisher's exact test), Q value = 0.16

Table S3569. Gene #359: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PIAS1 MUTATED	2	4	2	0
PIAS1 WILD-TYPE	96	40	48	57

'PIAS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0816 (Fisher's exact test), Q value = 0.21

Table S3570. Gene #359: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PIAS1 MUTATED	6	1	0	1	1
PIAS1 WILD-TYPE	56	58	40	36	58

'PIAS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.45

Table S3571. Gene #359: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PIAS1 MUTATED	4	0	5
PIAS1 WILD-TYPE	102	54	92

'PIAS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0829 (Fisher's exact test), Q value = 0.21

Table S3572. Gene #359: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PIAS1 MUTATED	8	1	1
PIAS1 WILD-TYPE	115	94	70

'PIAS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.72

Table S3573. Gene #359: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PIAS1 MUTATED	7	2	1
PIAS1 WILD-TYPE	150	61	68

'PIAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.25

Table S3574. Gene #359: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PIAS1 MUTATED	0	0	5	3	1	0
PIAS1 WILD-TYPE	33	19	54	36	15	45

'PIAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S3575. Gene #359: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PIAS1 MUTATED	3	0	4	0	1	1
PIAS1 WILD-TYPE	44	39	31	32	22	34

'NUFIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.058 (Fisher's exact test), Q value = 0.17

Table S3576. Gene #360: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NUFIP2 MUTATED	0	4	2	0	1
NUFIP2 WILD-TYPE	79	122	25	43	11

'NUFIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.37

Table S3577. Gene #360: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NUFIP2 MUTATED	1	3	2	0
NUFIP2 WILD-TYPE	70	73	32	63

'NUFIP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.26

Table S3578. Gene #360: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NUFIP2 MUTATED	0	1	4	0	2
NUFIP2 WILD-TYPE	16	61	47	65	53

'NUFIP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.63

Table S3579. Gene #360: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NUFIP2 MUTATED	4	2	0	1
NUFIP2 WILD-TYPE	94	42	50	56

'NUFIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.64

Table S3580. Gene #360: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NUFIP2 MUTATED	3	1	1	1	0
NUFIP2 WILD-TYPE	59	58	39	36	59

'NUFIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.46

Table S3581. Gene #360: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NUFIP2 MUTATED	1	1	4
NUFIP2 WILD-TYPE	105	53	93

'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.86

Table S3582. Gene #360: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NUFIP2 MUTATED	4	2	1
NUFIP2 WILD-TYPE	119	93	70

'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 0.84

Table S3583. Gene #360: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NUFIP2 MUTATED	5	1	1
NUFIP2 WILD-TYPE	152	62	68

'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.87

Table S3584. Gene #360: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NUFIP2 MUTATED	0	1	2	2	0	1
NUFIP2 WILD-TYPE	33	18	57	37	16	44

'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.38

Table S3585. Gene #360: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NUFIP2 MUTATED	1	1	0	2	2	0
NUFIP2 WILD-TYPE	46	38	35	30	21	35

'RUSC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 0.16

Table S3586. Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RUSC2 MUTATED	1	14	2	2	0
RUSC2 WILD-TYPE	78	112	25	41	12

'RUSC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.004 (Fisher's exact test), Q value = 0.04

Table S3587. Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RUSC2 MUTATED	0	10	3	3
RUSC2 WILD-TYPE	71	66	31	60

Figure S1352. Get High-res Image Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RUSC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.39

Table S3588. Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RUSC2 MUTATED	2	5	4	1	4
RUSC2 WILD-TYPE	14	57	47	64	51

'RUSC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00812 (Fisher's exact test), Q value = 0.059

Table S3589. Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RUSC2 MUTATED	7	7	2	0
RUSC2 WILD-TYPE	91	37	48	57

Figure S1353. Get High-res Image Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RUSC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00644 (Fisher's exact test), Q value = 0.052

Table S3590. Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RUSC2 MUTATED	8	1	4	2	0
RUSC2 WILD-TYPE	54	58	36	35	59

Figure S1354. Get High-res Image Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RUSC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.1

Table S3591. Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RUSC2 MUTATED	3	1	11
RUSC2 WILD-TYPE	103	53	86

Figure S1355. Get High-res Image Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RUSC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00157 (Fisher's exact test), Q value = 0.024

Table S3592. Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RUSC2 MUTATED	15	4	0
RUSC2 WILD-TYPE	108	91	71

Figure S1356. Get High-res Image Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RUSC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S3593. Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RUSC2 MUTATED	14	4	1
RUSC2 WILD-TYPE	143	59	68

'RUSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.33

Table S3594. Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RUSC2 MUTATED	0	2	7	4	0	2
RUSC2 WILD-TYPE	33	17	52	35	16	43

'RUSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0771 (Fisher's exact test), Q value = 0.2

Table S3595. Gene #361: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RUSC2 MUTATED	5	2	6	1	1	0
RUSC2 WILD-TYPE	42	37	29	31	22	35

'EGR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.14

Table S3596. Gene #362: 'EGR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EGR1 MUTATED	0	8	1	0	1
EGR1 WILD-TYPE	79	118	26	43	11

Figure S1357. Get High-res Image Gene #362: 'EGR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EGR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 0.18

Table S3597. Gene #362: 'EGR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EGR1 MUTATED	0	5	2	1
EGR1 WILD-TYPE	71	71	32	62

'EGR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.44

Table S3598. Gene #362: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EGR1 MUTATED	0	4	2	0	2
EGR1 WILD-TYPE	16	58	49	65	53

'EGR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0991 (Fisher's exact test), Q value = 0.23

Table S3599. Gene #362: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EGR1 MUTATED	2	3	3	0
EGR1 WILD-TYPE	96	41	47	57

'EGR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.1

Table S3600. Gene #362: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EGR1 MUTATED	5	0	1	2	0
EGR1 WILD-TYPE	57	59	39	35	59

Figure S1358. Get High-res Image Gene #362: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EGR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.083

Table S3601. Gene #362: 'EGR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EGR1 MUTATED	1	0	7
EGR1 WILD-TYPE	105	54	90

Figure S1359. Get High-res Image Gene #362: 'EGR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00993 (Fisher's exact test), Q value = 0.066

Table S3602. Gene #362: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EGR1 MUTATED	9	1	0
EGR1 WILD-TYPE	114	94	71

Figure S1360. Get High-res Image Gene #362: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.72

Table S3603. Gene #362: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EGR1 MUTATED	7	2	1
EGR1 WILD-TYPE	150	61	68

'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 0.89

Table S3604. Gene #362: 'EGR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EGR1 MUTATED	1	1	4	1	0	1
EGR1 WILD-TYPE	32	18	55	38	16	44

'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.45

Table S3605. Gene #362: 'EGR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EGR1 MUTATED	3	1	3	0	1	0
EGR1 WILD-TYPE	44	38	32	32	22	35

'TAF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.17

Table S3606. Gene #363: 'TAF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TAF6 MUTATED	0	9	1	1	1
TAF6 WILD-TYPE	79	117	26	42	11

'TAF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.44

Table S3607. Gene #363: 'TAF6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TAF6 MUTATED	2	6	1	1
TAF6 WILD-TYPE	69	70	33	62

'TAF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S3608. Gene #363: 'TAF6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TAF6 MUTATED	1	3	3	0	4
TAF6 WILD-TYPE	15	59	48	65	51

'TAF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.1

Table S3609. Gene #363: 'TAF6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TAF6 MUTATED	2	6	1	2
TAF6 WILD-TYPE	96	38	49	55

Figure S1361. Get High-res Image Gene #363: 'TAF6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TAF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.28

Table S3610. Gene #363: 'TAF6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TAF6 MUTATED	6	1	1	3	1
TAF6 WILD-TYPE	56	58	39	34	58

'TAF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.6

Table S3611. Gene #363: 'TAF6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TAF6 MUTATED	3	3	6
TAF6 WILD-TYPE	103	51	91

'TAF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.64

Table S3612. Gene #363: 'TAF6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TAF6 MUTATED	6	2	4
TAF6 WILD-TYPE	117	93	67

'TAF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 0.55

Table S3613. Gene #363: 'TAF6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TAF6 MUTATED	9	1	2
TAF6 WILD-TYPE	148	62	67

'TAF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 0.88

Table S3614. Gene #363: 'TAF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TAF6 MUTATED	1	1	3	3	0	1
TAF6 WILD-TYPE	32	18	56	36	16	44

'TAF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.65

Table S3615. Gene #363: 'TAF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TAF6 MUTATED	2	0	2	2	2	1
TAF6 WILD-TYPE	45	39	33	30	21	34

'C11ORF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.34

Table S3616. Gene #364: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C11ORF9 MUTATED	0	7	0	1	0
C11ORF9 WILD-TYPE	79	119	27	42	12

'C11ORF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.33

Table S3617. Gene #364: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C11ORF9 MUTATED	0	4	1	1
C11ORF9 WILD-TYPE	71	72	33	62

'C11ORF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.51

Table S3618. Gene #364: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C11ORF9 MUTATED	0	2	0	2	4
C11ORF9 WILD-TYPE	16	60	51	63	51

'C11ORF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S3619. Gene #364: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C11ORF9 MUTATED	1	3	1	3
C11ORF9 WILD-TYPE	97	41	49	54

'C11ORF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.41

Table S3620. Gene #364: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C11ORF9 MUTATED	2	2	1	3	0
C11ORF9 WILD-TYPE	60	57	39	34	59

'C11ORF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.74

Table S3621. Gene #364: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C11ORF9 MUTATED	2	2	4
C11ORF9 WILD-TYPE	104	52	93

'C11ORF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.3

Table S3622. Gene #364: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C11ORF9 MUTATED	6	2	0
C11ORF9 WILD-TYPE	117	93	71

'C11ORF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.31

Table S3623. Gene #364: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C11ORF9 MUTATED	7	1	0
C11ORF9 WILD-TYPE	150	62	69

'C11ORF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S3624. Gene #364: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C11ORF9 MUTATED	1	0	2	2	0	1
C11ORF9 WILD-TYPE	32	19	57	37	16	44

'C11ORF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.37

Table S3625. Gene #364: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C11ORF9 MUTATED	1	0	2	1	2	0
C11ORF9 WILD-TYPE	46	39	33	31	21	35

'KCNH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.68

Table S3626. Gene #365: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KCNH4 MUTATED	1	5	1	0	0
KCNH4 WILD-TYPE	78	121	26	43	12

'KCNH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.25

Table S3627. Gene #365: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KCNH4 MUTATED	1	5	1	0
KCNH4 WILD-TYPE	70	71	33	63

'KCNH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S3628. Gene #365: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KCNH4 MUTATED	0	2	0	0	3
KCNH4 WILD-TYPE	16	60	51	65	52

'KCNH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00997 (Fisher's exact test), Q value = 0.066

Table S3629. Gene #365: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KCNH4 MUTATED	0	3	2	0
KCNH4 WILD-TYPE	98	41	48	57

Figure S1362. Get High-res Image Gene #365: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.58

Table S3630. Gene #365: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KCNH4 MUTATED	2	0	1	2	1
KCNH4 WILD-TYPE	60	59	39	35	58

'KCNH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00444 (Fisher's exact test), Q value = 0.042

Table S3631. Gene #365: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KCNH4 MUTATED	0	0	6
KCNH4 WILD-TYPE	106	54	91

Figure S1363. Get High-res Image Gene #365: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 0.16

Table S3632. Gene #365: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KCNH4 MUTATED	6	0	1
KCNH4 WILD-TYPE	117	95	70

'KCNH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.5

Table S3633. Gene #365: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KCNH4 MUTATED	6	0	1
KCNH4 WILD-TYPE	151	63	68

'KCNH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.66

Table S3634. Gene #365: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KCNH4 MUTATED	2	1	2	1	0	0
KCNH4 WILD-TYPE	31	18	57	38	16	45

'KCNH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0744 (Fisher's exact test), Q value = 0.2

Table S3635. Gene #365: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KCNH4 MUTATED	4	0	2	0	0	0
KCNH4 WILD-TYPE	43	39	33	32	23	35

'TPTE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.78

Table S3636. Gene #366: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TPTE2 MUTATED	4	5	1	0	0
TPTE2 WILD-TYPE	75	121	26	43	12

'TPTE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.67

Table S3637. Gene #366: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TPTE2 MUTATED	4	2	0	2
TPTE2 WILD-TYPE	67	74	34	61

'TPTE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.4

Table S3638. Gene #366: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TPTE2 MUTATED	2	2	1	1	3
TPTE2 WILD-TYPE	14	60	50	64	52

'TPTE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 0.92

Table S3639. Gene #366: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TPTE2 MUTATED	4	2	2	1
TPTE2 WILD-TYPE	94	42	48	56

'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0773 (Fisher's exact test), Q value = 0.2

Table S3640. Gene #366: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TPTE2 MUTATED	2	0	0	3	1
TPTE2 WILD-TYPE	60	59	40	34	58

'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 0.83

Table S3641. Gene #366: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TPTE2 MUTATED	2	2	2
TPTE2 WILD-TYPE	104	52	95

'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 0.84

Table S3642. Gene #366: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TPTE2 MUTATED	5	2	3
TPTE2 WILD-TYPE	118	93	68

'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S3643. Gene #366: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TPTE2 MUTATED	6	0	4
TPTE2 WILD-TYPE	151	63	65

'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S3644. Gene #366: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TPTE2 MUTATED	3	1	2	0	1	0
TPTE2 WILD-TYPE	30	18	57	39	15	45

'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.72

Table S3645. Gene #366: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TPTE2 MUTATED	2	0	1	2	0	2
TPTE2 WILD-TYPE	45	39	34	30	23	33

'IGF2BP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.7

Table S3646. Gene #367: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IGF2BP3 MUTATED	0	3	0	1	0
IGF2BP3 WILD-TYPE	79	123	27	42	12

'IGF2BP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.14

Table S3647. Gene #367: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IGF2BP3 MUTATED	0	4	0	0
IGF2BP3 WILD-TYPE	71	72	34	63

Figure S1364. Get High-res Image Gene #367: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IGF2BP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3648. Gene #367: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IGF2BP3 MUTATED	0	1	0	1	1
IGF2BP3 WILD-TYPE	16	61	51	64	54

'IGF2BP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.45

Table S3649. Gene #367: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IGF2BP3 MUTATED	0	1	1	1
IGF2BP3 WILD-TYPE	98	43	49	56

'IGF2BP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.55

Table S3650. Gene #367: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IGF2BP3 MUTATED	3	1	1	0	0
IGF2BP3 WILD-TYPE	59	58	39	37	59

'IGF2BP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S3651. Gene #367: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IGF2BP3 MUTATED	1	0	4
IGF2BP3 WILD-TYPE	105	54	93

'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.12

Table S3652. Gene #367: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IGF2BP3 MUTATED	5	0	0
IGF2BP3 WILD-TYPE	118	95	71

Figure S1365. Get High-res Image Gene #367: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.4

Table S3653. Gene #367: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IGF2BP3 MUTATED	5	0	0
IGF2BP3 WILD-TYPE	152	63	69

'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.39

Table S3654. Gene #367: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IGF2BP3 MUTATED	2	1	1	0	0	0
IGF2BP3 WILD-TYPE	31	18	58	39	16	45

'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 0.79

Table S3655. Gene #367: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IGF2BP3 MUTATED	2	0	1	1	0	0
IGF2BP3 WILD-TYPE	45	39	34	31	23	35

'ALG10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.5

Table S3656. Gene #368: 'ALG10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ALG10 MUTATED	1	7	1	1	1
ALG10 WILD-TYPE	78	119	26	42	11

'ALG10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.08

Table S3657. Gene #368: 'ALG10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ALG10 MUTATED	0	7	1	1
ALG10 WILD-TYPE	71	69	33	62

Figure S1366. Get High-res Image Gene #368: 'ALG10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ALG10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.27

Table S3658. Gene #368: 'ALG10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ALG10 MUTATED	1	5	3	0	2
ALG10 WILD-TYPE	15	57	48	65	53

'ALG10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.24

Table S3659. Gene #368: 'ALG10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ALG10 MUTATED	4	4	3	0
ALG10 WILD-TYPE	94	40	47	57

'ALG10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.8

Table S3660. Gene #368: 'ALG10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ALG10 MUTATED	4	2	1	2	1
ALG10 WILD-TYPE	58	57	39	35	58

'ALG10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 0.79

Table S3661. Gene #368: 'ALG10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ALG10 MUTATED	3	2	5
ALG10 WILD-TYPE	103	52	92

'ALG10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 0.85

Table S3662. Gene #368: 'ALG10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ALG10 MUTATED	6	3	2
ALG10 WILD-TYPE	117	92	69

'ALG10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.42

Table S3663. Gene #368: 'ALG10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ALG10 MUTATED	9	1	1
ALG10 WILD-TYPE	148	62	68

'ALG10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.7

Table S3664. Gene #368: 'ALG10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ALG10 MUTATED	0	0	4	2	0	1
ALG10 WILD-TYPE	33	19	55	37	16	44

'ALG10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S3665. Gene #368: 'ALG10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ALG10 MUTATED	1	1	2	1	1	1
ALG10 WILD-TYPE	46	38	33	31	22	34

'PLAG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0866 (Fisher's exact test), Q value = 0.21

Table S3666. Gene #369: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLAG1 MUTATED	0	9	1	1	0
PLAG1 WILD-TYPE	79	117	26	42	12

'PLAG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.074 (Fisher's exact test), Q value = 0.2

Table S3667. Gene #369: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLAG1 MUTATED	0	5	0	2
PLAG1 WILD-TYPE	71	71	34	61

'PLAG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.38

Table S3668. Gene #369: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PLAG1 MUTATED	2	1	3	2	1
PLAG1 WILD-TYPE	14	61	48	63	54

'PLAG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.49

Table S3669. Gene #369: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PLAG1 MUTATED	4	3	0	2
PLAG1 WILD-TYPE	94	41	50	55

'PLAG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S3670. Gene #369: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PLAG1 MUTATED	4	2	1	3	0
PLAG1 WILD-TYPE	58	57	39	34	59

'PLAG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S3671. Gene #369: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PLAG1 MUTATED	2	1	7
PLAG1 WILD-TYPE	104	53	90

'PLAG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00514 (Fisher's exact test), Q value = 0.045

Table S3672. Gene #369: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PLAG1 MUTATED	10	1	0
PLAG1 WILD-TYPE	113	94	71

Figure S1367. Get High-res Image Gene #369: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLAG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0404 (Fisher's exact test), Q value = 0.14

Table S3673. Gene #369: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PLAG1 MUTATED	10	1	0
PLAG1 WILD-TYPE	147	62	69

Figure S1368. Get High-res Image Gene #369: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PLAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S3674. Gene #369: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PLAG1 MUTATED	1	1	3	1	0	1
PLAG1 WILD-TYPE	32	18	56	38	16	44

'PLAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.37

Table S3675. Gene #369: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PLAG1 MUTATED	3	1	3	0	0	0
PLAG1 WILD-TYPE	44	38	32	32	23	35

'ARFGEF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0028 (Fisher's exact test), Q value = 0.033

Table S3676. Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARFGEF1 MUTATED	1	19	2	1	1
ARFGEF1 WILD-TYPE	78	107	25	42	11

Figure S1369. Get High-res Image Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.011

Table S3677. Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARFGEF1 MUTATED	1	13	3	1
ARFGEF1 WILD-TYPE	70	63	31	62

Figure S1370. Get High-res Image Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00242 (Fisher's exact test), Q value = 0.031

Table S3678. Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ARFGEF1 MUTATED	1	11	3	0	6
ARFGEF1 WILD-TYPE	15	51	48	65	49

Figure S1371. Get High-res Image Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0025

Table S3679. Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ARFGEF1 MUTATED	3	12	5	1
ARFGEF1 WILD-TYPE	95	32	45	56

Figure S1372. Get High-res Image Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S3680. Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ARFGEF1 MUTATED	15	1	0	6	1
ARFGEF1 WILD-TYPE	47	58	40	31	58

Figure S1373. Get High-res Image Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0051

Table S3681. Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ARFGEF1 MUTATED	5	0	18
ARFGEF1 WILD-TYPE	101	54	79

Figure S1374. Get High-res Image Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S3682. Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ARFGEF1 MUTATED	22	0	2
ARFGEF1 WILD-TYPE	101	95	69

Figure S1375. Get High-res Image Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029

Table S3683. Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ARFGEF1 MUTATED	23	0	1
ARFGEF1 WILD-TYPE	134	63	68

Figure S1376. Get High-res Image Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 0.19

Table S3684. Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ARFGEF1 MUTATED	4	3	5	4	0	0
ARFGEF1 WILD-TYPE	29	16	54	35	16	45

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00466 (Fisher's exact test), Q value = 0.043

Table S3685. Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ARFGEF1 MUTATED	9	0	2	3	2	0
ARFGEF1 WILD-TYPE	38	39	33	29	21	35

Figure S1377. Get High-res Image Gene #370: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC12A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.13

Table S3686. Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC12A7 MUTATED	2	14	1	0	0
SLC12A7 WILD-TYPE	77	112	26	43	12

Figure S1378. Get High-res Image Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC12A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00295 (Fisher's exact test), Q value = 0.034

Table S3687. Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC12A7 MUTATED	2	12	1	1
SLC12A7 WILD-TYPE	69	64	33	62

Figure S1379. Get High-res Image Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC12A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0399 (Fisher's exact test), Q value = 0.14

Table S3688. Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC12A7 MUTATED	1	6	1	0	4
SLC12A7 WILD-TYPE	15	56	50	65	51

Figure S1380. Get High-res Image Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SLC12A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00989 (Fisher's exact test), Q value = 0.066

Table S3689. Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC12A7 MUTATED	1	6	3	2
SLC12A7 WILD-TYPE	97	38	47	55

Figure S1381. Get High-res Image Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC12A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00488 (Fisher's exact test), Q value = 0.044

Table S3690. Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC12A7 MUTATED	10	1	1	3	1
SLC12A7 WILD-TYPE	52	58	39	34	58

Figure S1382. Get High-res Image Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC12A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00349 (Fisher's exact test), Q value = 0.036

Table S3691. Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC12A7 MUTATED	4	0	12
SLC12A7 WILD-TYPE	102	54	85

Figure S1383. Get High-res Image Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00368 (Fisher's exact test), Q value = 0.038

Table S3692. Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC12A7 MUTATED	14	1	3
SLC12A7 WILD-TYPE	109	94	68

Figure S1384. Get High-res Image Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00985 (Fisher's exact test), Q value = 0.066

Table S3693. Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC12A7 MUTATED	16	1	1
SLC12A7 WILD-TYPE	141	62	68

Figure S1385. Get High-res Image Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.14

Table S3694. Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC12A7 MUTATED	2	4	5	4	0	0
SLC12A7 WILD-TYPE	31	15	54	35	16	45

Figure S1386. Get High-res Image Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00274 (Fisher's exact test), Q value = 0.032

Table S3695. Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC12A7 MUTATED	9	0	3	1	2	0
SLC12A7 WILD-TYPE	38	39	32	31	21	35

Figure S1387. Get High-res Image Gene #371: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRUB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.36

Table S3696. Gene #372: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TRUB1 MUTATED	1	8	0	0	0
TRUB1 WILD-TYPE	78	118	27	43	12

'TRUB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.12

Table S3697. Gene #372: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TRUB1 MUTATED	0	6	0	2
TRUB1 WILD-TYPE	71	70	34	61

Figure S1388. Get High-res Image Gene #372: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRUB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.19

Table S3698. Gene #372: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TRUB1 MUTATED	1	5	1	0	1
TRUB1 WILD-TYPE	15	57	50	65	54

'TRUB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.077

Table S3699. Gene #372: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TRUB1 MUTATED	1	4	3	0
TRUB1 WILD-TYPE	97	40	47	57

Figure S1389. Get High-res Image Gene #372: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TRUB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00498 (Fisher's exact test), Q value = 0.045

Table S3700. Gene #372: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TRUB1 MUTATED	7	0	0	1	1
TRUB1 WILD-TYPE	55	59	40	36	58

Figure S1390. Get High-res Image Gene #372: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TRUB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0417 (Fisher's exact test), Q value = 0.14

Table S3701. Gene #372: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TRUB1 MUTATED	2	0	7
TRUB1 WILD-TYPE	104	54	90

Figure S1391. Get High-res Image Gene #372: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TRUB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.4

Table S3702. Gene #372: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TRUB1 MUTATED	6	1	2
TRUB1 WILD-TYPE	117	94	69

'TRUB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.28

Table S3703. Gene #372: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TRUB1 MUTATED	8	0	1
TRUB1 WILD-TYPE	149	63	68

'TRUB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.37

Table S3704. Gene #372: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TRUB1 MUTATED	1	0	3	4	0	0
TRUB1 WILD-TYPE	32	19	56	35	16	45

'TRUB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.4

Table S3705. Gene #372: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TRUB1 MUTATED	3	0	2	1	2	0
TRUB1 WILD-TYPE	44	39	33	31	21	35

'SRCIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.29

Table S3706. Gene #373: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SRCIN1 MUTATED	2	8	3	0	0
SRCIN1 WILD-TYPE	77	118	24	43	12

'SRCIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.53

Table S3707. Gene #373: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SRCIN1 MUTATED	2	5	2	1
SRCIN1 WILD-TYPE	69	71	32	62

'SRCIN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 0.2

Table S3708. Gene #373: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SRCIN1 MUTATED	0	6	2	0	2
SRCIN1 WILD-TYPE	16	56	49	65	53

'SRCIN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00587 (Fisher's exact test), Q value = 0.049

Table S3709. Gene #373: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SRCIN1 MUTATED	1	6	2	1
SRCIN1 WILD-TYPE	97	38	48	56

Figure S1392. Get High-res Image Gene #373: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SRCIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.092

Table S3710. Gene #373: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SRCIN1 MUTATED	4	0	2	5	1
SRCIN1 WILD-TYPE	58	59	38	32	58

Figure S1393. Get High-res Image Gene #373: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SRCIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00396 (Fisher's exact test), Q value = 0.039

Table S3711. Gene #373: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SRCIN1 MUTATED	2	0	10
SRCIN1 WILD-TYPE	104	54	87

Figure S1394. Get High-res Image Gene #373: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.15

Table S3712. Gene #373: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SRCIN1 MUTATED	10	2	1
SRCIN1 WILD-TYPE	113	93	70

Figure S1395. Get High-res Image Gene #373: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.66

Table S3713. Gene #373: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SRCIN1 MUTATED	9	1	3
SRCIN1 WILD-TYPE	148	62	66

'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 0.86

Table S3714. Gene #373: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SRCIN1 MUTATED	1	1	4	3	0	1
SRCIN1 WILD-TYPE	32	18	55	36	16	44

'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S3715. Gene #373: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SRCIN1 MUTATED	5	1	1	1	1	1
SRCIN1 WILD-TYPE	42	38	34	31	22	34

'CA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.44

Table S3716. Gene #374: 'CA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CA2 MUTATED	0	5	0	0	0
CA2 WILD-TYPE	79	121	27	43	12

'CA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.29

Table S3717. Gene #374: 'CA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CA2 MUTATED	1	4	0	0
CA2 WILD-TYPE	70	72	34	63

'CA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.11

Table S3718. Gene #374: 'CA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CA2 MUTATED	0	0	4	0	1
CA2 WILD-TYPE	16	62	47	65	54

Figure S1396. Get High-res Image Gene #374: 'CA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00749 (Fisher's exact test), Q value = 0.056

Table S3719. Gene #374: 'CA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CA2 MUTATED	1	4	0	0
CA2 WILD-TYPE	97	40	50	57

Figure S1397. Get High-res Image Gene #374: 'CA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S3720. Gene #374: 'CA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CA2 MUTATED	3	0	1	1	0
CA2 WILD-TYPE	59	59	39	36	59

'CA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.08

Table S3721. Gene #374: 'CA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CA2 MUTATED	0	0	5
CA2 WILD-TYPE	106	54	92

Figure S1398. Get High-res Image Gene #374: 'CA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S3722. Gene #374: 'CA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CA2 MUTATED	4	0	1
CA2 WILD-TYPE	119	95	70

'CA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.4

Table S3723. Gene #374: 'CA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CA2 MUTATED	5	0	0
CA2 WILD-TYPE	152	63	69

'CA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.63

Table S3724. Gene #374: 'CA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CA2 MUTATED	1	1	1	2	0	0
CA2 WILD-TYPE	32	18	58	37	16	45

'CA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0365 (Fisher's exact test), Q value = 0.13

Table S3725. Gene #374: 'CA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CA2 MUTATED	4	0	0	0	1	0
CA2 WILD-TYPE	43	39	35	32	22	35

Figure S1399. Get High-res Image Gene #374: 'CA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDH16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.1

Table S3726. Gene #375: 'CDH16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDH16 MUTATED	1	9	0	0	2
CDH16 WILD-TYPE	78	117	27	43	10

Figure S1400. Get High-res Image Gene #375: 'CDH16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDH16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S3727. Gene #375: 'CDH16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDH16 MUTATED	1	6	2	1
CDH16 WILD-TYPE	70	70	32	62

'CDH16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.59

Table S3728. Gene #375: 'CDH16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CDH16 MUTATED	0	5	2	1	3
CDH16 WILD-TYPE	16	57	49	64	52

'CDH16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S3729. Gene #375: 'CDH16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CDH16 MUTATED	4	3	4	0
CDH16 WILD-TYPE	94	41	46	57

'CDH16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0516 (Fisher's exact test), Q value = 0.16

Table S3730. Gene #375: 'CDH16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CDH16 MUTATED	6	1	2	1	0
CDH16 WILD-TYPE	56	58	38	36	59

'CDH16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 0.1

Table S3731. Gene #375: 'CDH16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CDH16 MUTATED	2	0	8
CDH16 WILD-TYPE	104	54	89

Figure S1401. Get High-res Image Gene #375: 'CDH16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDH16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.092

Table S3732. Gene #375: 'CDH16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CDH16 MUTATED	10	1	1
CDH16 WILD-TYPE	113	94	70

Figure S1402. Get High-res Image Gene #375: 'CDH16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDH16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.55

Table S3733. Gene #375: 'CDH16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CDH16 MUTATED	9	1	2
CDH16 WILD-TYPE	148	62	67

'CDH16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.64

Table S3734. Gene #375: 'CDH16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CDH16 MUTATED	2	0	3	2	0	0
CDH16 WILD-TYPE	31	19	56	37	16	45

'CDH16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.4

Table S3735. Gene #375: 'CDH16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CDH16 MUTATED	3	0	1	1	2	0
CDH16 WILD-TYPE	44	39	34	31	21	35

'ANKRD23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.86

Table S3736. Gene #376: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ANKRD23 MUTATED	1	4	0	0	0
ANKRD23 WILD-TYPE	78	122	27	43	12

'ANKRD23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.52

Table S3737. Gene #376: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ANKRD23 MUTATED	1	3	0	0
ANKRD23 WILD-TYPE	70	73	34	63

'ANKRD23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.65

Table S3738. Gene #376: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ANKRD23 MUTATED	0	3	1	1	0
ANKRD23 WILD-TYPE	16	59	50	64	55

'ANKRD23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.66

Table S3739. Gene #376: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ANKRD23 MUTATED	1	2	1	1
ANKRD23 WILD-TYPE	97	42	49	56

'ANKRD23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.951 (Fisher's exact test), Q value = 0.99

Table S3740. Gene #376: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ANKRD23 MUTATED	1	1	0	1	1
ANKRD23 WILD-TYPE	61	58	40	36	58

'ANKRD23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 0.89

Table S3741. Gene #376: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ANKRD23 MUTATED	1	1	2
ANKRD23 WILD-TYPE	105	53	95

'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3742. Gene #376: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ANKRD23 MUTATED	2	2	1
ANKRD23 WILD-TYPE	121	93	70

'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.71

Table S3743. Gene #376: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ANKRD23 MUTATED	2	2	1
ANKRD23 WILD-TYPE	155	61	68

'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.63

Table S3744. Gene #376: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ANKRD23 MUTATED	2	0	1	1	0	0
ANKRD23 WILD-TYPE	31	19	58	38	16	45

'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 0.84

Table S3745. Gene #376: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ANKRD23 MUTATED	1	0	1	0	1	1
ANKRD23 WILD-TYPE	46	39	34	32	22	34

'HDLBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00684 (Fisher's exact test), Q value = 0.054

Table S3746. Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HDLBP MUTATED	1	15	1	3	3
HDLBP WILD-TYPE	78	111	26	40	9

Figure S1403. Get High-res Image Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HDLBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.18

Table S3747. Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HDLBP MUTATED	2	7	6	4
HDLBP WILD-TYPE	69	69	28	59

'HDLBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 0.19

Table S3748. Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HDLBP MUTATED	2	8	3	1	6
HDLBP WILD-TYPE	14	54	48	64	49

'HDLBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.63

Table S3749. Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HDLBP MUTATED	6	6	4	4
HDLBP WILD-TYPE	92	38	46	53

'HDLBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.0079

Table S3750. Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HDLBP MUTATED	15	2	1	3	2
HDLBP WILD-TYPE	47	57	39	34	57

Figure S1404. Get High-res Image Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HDLBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0213 (Fisher's exact test), Q value = 0.099

Table S3751. Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HDLBP MUTATED	6	2	15
HDLBP WILD-TYPE	100	52	82

Figure S1405. Get High-res Image Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S3752. Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HDLBP MUTATED	20	3	1
HDLBP WILD-TYPE	103	92	70

Figure S1406. Get High-res Image Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00813 (Fisher's exact test), Q value = 0.059

Table S3753. Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HDLBP MUTATED	20	3	1
HDLBP WILD-TYPE	137	60	68

Figure S1407. Get High-res Image Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.54

Table S3754. Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HDLBP MUTATED	5	2	6	3	1	1
HDLBP WILD-TYPE	28	17	53	36	15	44

'HDLBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0114 (Fisher's exact test), Q value = 0.07

Table S3755. Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HDLBP MUTATED	9	1	4	0	3	1
HDLBP WILD-TYPE	38	38	31	32	20	34

Figure S1408. Get High-res Image Gene #377: 'HDLBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HEXDC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.44

Table S3756. Gene #378: 'HEXDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HEXDC MUTATED	0	5	0	0	0
HEXDC WILD-TYPE	79	121	27	43	12

'HEXDC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.42

Table S3757. Gene #378: 'HEXDC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HEXDC MUTATED	0	3	0	1
HEXDC WILD-TYPE	71	73	34	62

'HEXDC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0917 (Fisher's exact test), Q value = 0.22

Table S3758. Gene #378: 'HEXDC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HEXDC MUTATED	0	0	3	0	2
HEXDC WILD-TYPE	16	62	48	65	53

'HEXDC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.4

Table S3759. Gene #378: 'HEXDC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HEXDC MUTATED	3	2	0	0
HEXDC WILD-TYPE	95	42	50	57

'HEXDC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.52

Table S3760. Gene #378: 'HEXDC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HEXDC MUTATED	1	1	2	0	0
HEXDC WILD-TYPE	61	58	38	37	59

'HEXDC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S3761. Gene #378: 'HEXDC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HEXDC MUTATED	0	1	3
HEXDC WILD-TYPE	106	53	94

'HEXDC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.46

Table S3762. Gene #378: 'HEXDC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HEXDC MUTATED	4	1	0
HEXDC WILD-TYPE	119	94	71

'HEXDC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.63

Table S3763. Gene #378: 'HEXDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HEXDC MUTATED	4	1	0
HEXDC WILD-TYPE	153	62	69

'HEXDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.57

Table S3764. Gene #378: 'HEXDC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HEXDC MUTATED	0	0	0	2	0	1
HEXDC WILD-TYPE	33	19	59	37	16	44

'HEXDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.54

Table S3765. Gene #378: 'HEXDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HEXDC MUTATED	0	1	0	1	1	0
HEXDC WILD-TYPE	47	38	35	31	22	35

'GRK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.7

Table S3766. Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GRK4 MUTATED	0	3	0	1	0
GRK4 WILD-TYPE	79	123	27	42	12

'GRK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.076

Table S3767. Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GRK4 MUTATED	0	5	0	0
GRK4 WILD-TYPE	71	71	34	63

Figure S1409. Get High-res Image Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GRK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.56

Table S3768. Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GRK4 MUTATED	0	2	1	0	0
GRK4 WILD-TYPE	16	60	50	65	55

'GRK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00522 (Fisher's exact test), Q value = 0.046

Table S3769. Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GRK4 MUTATED	0	3	0	0
GRK4 WILD-TYPE	98	41	50	57

Figure S1410. Get High-res Image Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GRK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.1

Table S3770. Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GRK4 MUTATED	4	0	0	0	0
GRK4 WILD-TYPE	58	59	40	37	59

Figure S1411. Get High-res Image Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GRK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0492 (Fisher's exact test), Q value = 0.16

Table S3771. Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GRK4 MUTATED	0	0	4
GRK4 WILD-TYPE	106	54	93

Figure S1412. Get High-res Image Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GRK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.12

Table S3772. Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GRK4 MUTATED	5	0	0
GRK4 WILD-TYPE	118	95	71

Figure S1413. Get High-res Image Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GRK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.4

Table S3773. Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GRK4 MUTATED	5	0	0
GRK4 WILD-TYPE	152	63	69

'GRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S3774. Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GRK4 MUTATED	1	0	2	2	0	0
GRK4 WILD-TYPE	32	19	57	37	16	45

'GRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0826 (Fisher's exact test), Q value = 0.21

Table S3775. Gene #379: 'GRK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GRK4 MUTATED	4	0	1	0	0	0
GRK4 WILD-TYPE	43	39	34	32	23	35

'MYOCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00275 (Fisher's exact test), Q value = 0.032

Table S3776. Gene #380: 'MYOCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MYOCD MUTATED	0	13	0	0	0
MYOCD WILD-TYPE	79	113	27	43	12

Figure S1414. Get High-res Image Gene #380: 'MYOCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MYOCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S3777. Gene #380: 'MYOCD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MYOCD MUTATED	1	6	3	2
MYOCD WILD-TYPE	70	70	31	61

'MYOCD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.43

Table S3778. Gene #380: 'MYOCD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MYOCD MUTATED	1	4	5	1	2
MYOCD WILD-TYPE	15	58	46	64	53

'MYOCD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 0.93

Table S3779. Gene #380: 'MYOCD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MYOCD MUTATED	4	3	3	3
MYOCD WILD-TYPE	94	41	47	54

'MYOCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S3780. Gene #380: 'MYOCD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MYOCD MUTATED	5	2	2	3	0
MYOCD WILD-TYPE	57	57	38	34	59

'MYOCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 0.91

Table S3781. Gene #380: 'MYOCD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MYOCD MUTATED	6	2	4
MYOCD WILD-TYPE	100	52	93

'MYOCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.53

Table S3782. Gene #380: 'MYOCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MYOCD MUTATED	7	5	1
MYOCD WILD-TYPE	116	90	70

'MYOCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S3783. Gene #380: 'MYOCD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MYOCD MUTATED	10	1	2
MYOCD WILD-TYPE	147	62	67

'MYOCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.25

Table S3784. Gene #380: 'MYOCD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MYOCD MUTATED	1	3	4	2	0	0
MYOCD WILD-TYPE	32	16	55	37	16	45

'MYOCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.51

Table S3785. Gene #380: 'MYOCD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MYOCD MUTATED	4	0	1	2	2	1
MYOCD WILD-TYPE	43	39	34	30	21	34

'WHSC1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 0.2

Table S3786. Gene #381: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WHSC1L1 MUTATED	1	12	1	1	1
WHSC1L1 WILD-TYPE	78	114	26	42	11

'WHSC1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00115 (Fisher's exact test), Q value = 0.02

Table S3787. Gene #381: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WHSC1L1 MUTATED	0	8	2	0
WHSC1L1 WILD-TYPE	71	68	32	63

Figure S1415. Get High-res Image Gene #381: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WHSC1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.31

Table S3788. Gene #381: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WHSC1L1 MUTATED	0	5	6	1	3
WHSC1L1 WILD-TYPE	16	57	45	64	52

'WHSC1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00747 (Fisher's exact test), Q value = 0.056

Table S3789. Gene #381: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WHSC1L1 MUTATED	3	8	2	2
WHSC1L1 WILD-TYPE	95	36	48	55

Figure S1416. Get High-res Image Gene #381: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00583 (Fisher's exact test), Q value = 0.049

Table S3790. Gene #381: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WHSC1L1 MUTATED	10	3	0	2	1
WHSC1L1 WILD-TYPE	52	56	40	35	58

Figure S1417. Get High-res Image Gene #381: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.29

Table S3791. Gene #381: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WHSC1L1 MUTATED	4	2	10
WHSC1L1 WILD-TYPE	102	52	87

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.081

Table S3792. Gene #381: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WHSC1L1 MUTATED	12	1	3
WHSC1L1 WILD-TYPE	111	94	68

Figure S1418. Get High-res Image Gene #381: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0927 (Fisher's exact test), Q value = 0.22

Table S3793. Gene #381: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WHSC1L1 MUTATED	13	1	2
WHSC1L1 WILD-TYPE	144	62	67

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.42

Table S3794. Gene #381: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WHSC1L1 MUTATED	2	2	3	1	0	0
WHSC1L1 WILD-TYPE	31	17	56	38	16	45

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.52

Table S3795. Gene #381: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WHSC1L1 MUTATED	3	0	3	1	0	1
WHSC1L1 WILD-TYPE	44	39	32	31	23	34

'STX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.57

Table S3796. Gene #382: 'STX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STX2 MUTATED	0	4	1	1	0
STX2 WILD-TYPE	79	122	26	42	12

'STX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.098

Table S3797. Gene #382: 'STX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
STX2 MUTATED	0	5	1	0
STX2 WILD-TYPE	71	71	33	63

Figure S1419. Get High-res Image Gene #382: 'STX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 0.95

Table S3798. Gene #382: 'STX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
STX2 MUTATED	0	1	1	1	2
STX2 WILD-TYPE	16	61	50	64	53

'STX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0404 (Fisher's exact test), Q value = 0.14

Table S3799. Gene #382: 'STX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
STX2 MUTATED	0	3	1	1
STX2 WILD-TYPE	98	41	49	56

Figure S1420. Get High-res Image Gene #382: 'STX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.8

Table S3800. Gene #382: 'STX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
STX2 MUTATED	2	0	1	1	1
STX2 WILD-TYPE	60	59	39	36	58

'STX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S3801. Gene #382: 'STX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
STX2 MUTATED	1	0	4
STX2 WILD-TYPE	105	54	93

'STX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.75

Table S3802. Gene #382: 'STX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
STX2 MUTATED	3	1	2
STX2 WILD-TYPE	120	94	69

'STX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.49

Table S3803. Gene #382: 'STX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
STX2 MUTATED	5	1	0
STX2 WILD-TYPE	152	62	69

'STX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 0.82

Table S3804. Gene #382: 'STX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
STX2 MUTATED	2	1	1	1	0	1
STX2 WILD-TYPE	31	18	58	38	16	44

'STX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 0.79

Table S3805. Gene #382: 'STX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
STX2 MUTATED	3	1	1	1	0	0
STX2 WILD-TYPE	44	38	34	31	23	35

'MGST2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.66

Table S3806. Gene #383: 'MGST2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MGST2 MUTATED	0	3	0	0	0
MGST2 WILD-TYPE	79	123	27	43	12

'MGST2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.19

Table S3807. Gene #383: 'MGST2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MGST2 MUTATED	0	1	2	0
MGST2 WILD-TYPE	71	75	32	63

'MGST2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.18

Table S3808. Gene #383: 'MGST2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MGST2 MUTATED	3	0	0	0	0
MGST2 WILD-TYPE	59	59	40	37	59

'MGST2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S3809. Gene #383: 'MGST2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MGST2 MUTATED	0	0	3
MGST2 WILD-TYPE	106	54	94

'MGST2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S3810. Gene #383: 'MGST2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MGST2 MUTATED	3	0	0
MGST2 WILD-TYPE	120	95	71

'MGST2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.56

Table S3811. Gene #383: 'MGST2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MGST2 MUTATED	3	0	0
MGST2 WILD-TYPE	154	63	69

'MTIF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.096

Table S3812. Gene #384: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MTIF2 MUTATED	0	12	1	1	0
MTIF2 WILD-TYPE	79	114	26	42	12

Figure S1421. Get High-res Image Gene #384: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MTIF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00914 (Fisher's exact test), Q value = 0.063

Table S3813. Gene #384: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MTIF2 MUTATED	0	7	3	1
MTIF2 WILD-TYPE	71	69	31	62

Figure S1422. Get High-res Image Gene #384: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MTIF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.31

Table S3814. Gene #384: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MTIF2 MUTATED	1	4	3	0	4
MTIF2 WILD-TYPE	15	58	48	65	51

'MTIF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.055 (Fisher's exact test), Q value = 0.17

Table S3815. Gene #384: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MTIF2 MUTATED	5	5	2	0
MTIF2 WILD-TYPE	93	39	48	57

'MTIF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0419 (Fisher's exact test), Q value = 0.14

Table S3816. Gene #384: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MTIF2 MUTATED	6	1	2	3	0
MTIF2 WILD-TYPE	56	58	38	34	59

Figure S1423. Get High-res Image Gene #384: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MTIF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.27

Table S3817. Gene #384: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MTIF2 MUTATED	3	1	8
MTIF2 WILD-TYPE	103	53	89

'MTIF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.069

Table S3818. Gene #384: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MTIF2 MUTATED	11	3	0
MTIF2 WILD-TYPE	112	92	71

Figure S1424. Get High-res Image Gene #384: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MTIF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.33

Table S3819. Gene #384: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MTIF2 MUTATED	11	2	1
MTIF2 WILD-TYPE	146	61	68

'MTIF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S3820. Gene #384: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MTIF2 MUTATED	0	3	3	2	0	1
MTIF2 WILD-TYPE	33	16	56	37	16	44

'MTIF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.55

Table S3821. Gene #384: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MTIF2 MUTATED	3	1	3	2	0	0
MTIF2 WILD-TYPE	44	38	32	30	23	35

'TMEM41B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.7

Table S3822. Gene #385: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TMEM41B MUTATED	0	3	0	1	0
TMEM41B WILD-TYPE	79	123	27	42	12

'TMEM41B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 0.91

Table S3823. Gene #385: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TMEM41B MUTATED	1	2	0	0
TMEM41B WILD-TYPE	70	74	34	63

'TMEM41B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.64

Table S3824. Gene #385: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TMEM41B MUTATED	0	1	2	0	1
TMEM41B WILD-TYPE	16	61	49	65	54

'TMEM41B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0505 (Fisher's exact test), Q value = 0.16

Table S3825. Gene #385: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TMEM41B MUTATED	1	3	0	0
TMEM41B WILD-TYPE	97	41	50	57

'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.51

Table S3826. Gene #385: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TMEM41B MUTATED	3	0	1
TMEM41B WILD-TYPE	120	95	70

'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 0.87

Table S3827. Gene #385: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TMEM41B MUTATED	3	0	1
TMEM41B WILD-TYPE	154	63	68

'TMEM41B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 0.88

Table S3828. Gene #385: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TMEM41B MUTATED	1	0	1	1	0	0
TMEM41B WILD-TYPE	32	19	58	38	16	45

'TMEM41B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.71

Table S3829. Gene #385: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TMEM41B MUTATED	2	0	0	0	0	1
TMEM41B WILD-TYPE	45	39	35	32	23	34

'ARHGEF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.44

Table S3830. Gene #386: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARHGEF5 MUTATED	0	5	0	0	0
ARHGEF5 WILD-TYPE	79	121	27	43	12

'ARHGEF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S3831. Gene #386: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARHGEF5 MUTATED	0	2	1	0
ARHGEF5 WILD-TYPE	71	74	33	63

'ARHGEF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 0.92

Table S3832. Gene #386: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ARHGEF5 MUTATED	0	1	2	1	1
ARHGEF5 WILD-TYPE	16	61	49	64	54

'ARHGEF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.64

Table S3833. Gene #386: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ARHGEF5 MUTATED	2	2	0	1
ARHGEF5 WILD-TYPE	96	42	50	56

'ARHGEF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.79

Table S3834. Gene #386: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ARHGEF5 MUTATED	2	1	1	1	0
ARHGEF5 WILD-TYPE	60	58	39	36	59

'ARHGEF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.73

Table S3835. Gene #386: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ARHGEF5 MUTATED	1	1	3
ARHGEF5 WILD-TYPE	105	53	94

'ARHGEF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.46

Table S3836. Gene #386: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ARHGEF5 MUTATED	4	1	0
ARHGEF5 WILD-TYPE	119	94	71

'ARHGEF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.63

Table S3837. Gene #386: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ARHGEF5 MUTATED	4	1	0
ARHGEF5 WILD-TYPE	153	62	69

'BEST3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.63

Table S3838. Gene #387: 'BEST3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BEST3 MUTATED	3	5	2	0	0
BEST3 WILD-TYPE	76	121	25	43	12

'BEST3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.78

Table S3839. Gene #387: 'BEST3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BEST3 MUTATED	1	1	1	2
BEST3 WILD-TYPE	70	75	33	61

'BEST3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.57

Table S3840. Gene #387: 'BEST3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BEST3 MUTATED	0	2	4	1	1
BEST3 WILD-TYPE	16	60	47	64	54

'BEST3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.41

Table S3841. Gene #387: 'BEST3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BEST3 MUTATED	4	3	0	1
BEST3 WILD-TYPE	94	41	50	56

'BEST3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.6

Table S3842. Gene #387: 'BEST3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BEST3 MUTATED	1	1	0	2	3
BEST3 WILD-TYPE	61	58	40	35	56

'BEST3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.71

Table S3843. Gene #387: 'BEST3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BEST3 MUTATED	2	1	4
BEST3 WILD-TYPE	104	53	93

'BEST3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.71

Table S3844. Gene #387: 'BEST3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BEST3 MUTATED	6	2	2
BEST3 WILD-TYPE	117	93	69

'BEST3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3845. Gene #387: 'BEST3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BEST3 MUTATED	6	2	2
BEST3 WILD-TYPE	151	61	67

'BEST3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.74

Table S3846. Gene #387: 'BEST3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BEST3 MUTATED	1	1	1	0	0	2
BEST3 WILD-TYPE	32	18	58	39	16	43

'BEST3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.76

Table S3847. Gene #387: 'BEST3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BEST3 MUTATED	2	2	0	0	0	1
BEST3 WILD-TYPE	45	37	35	32	23	34

'BMPR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.13

Table S3848. Gene #388: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BMPR1B MUTATED	0	4	0	1	2
BMPR1B WILD-TYPE	79	122	27	42	10

Figure S1425. Get High-res Image Gene #388: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BMPR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.15

Table S3849. Gene #388: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BMPR1B MUTATED	0	3	2	0
BMPR1B WILD-TYPE	71	73	32	63

Figure S1426. Get High-res Image Gene #388: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BMPR1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 0.92

Table S3850. Gene #388: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BMPR1B MUTATED	0	1	2	1	1
BMPR1B WILD-TYPE	16	61	49	64	54

'BMPR1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 0.83

Table S3851. Gene #388: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BMPR1B MUTATED	1	1	1	2
BMPR1B WILD-TYPE	97	43	49	55

'BMPR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.51

Table S3852. Gene #388: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BMPR1B MUTATED	3	1	1	2	0
BMPR1B WILD-TYPE	59	58	39	35	59

'BMPR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.27

Table S3853. Gene #388: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BMPR1B MUTATED	2	0	5
BMPR1B WILD-TYPE	104	54	92

'BMPR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.52

Table S3854. Gene #388: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BMPR1B MUTATED	5	1	1
BMPR1B WILD-TYPE	118	94	70

'BMPR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.07 (Fisher's exact test), Q value = 0.19

Table S3855. Gene #388: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BMPR1B MUTATED	7	0	0
BMPR1B WILD-TYPE	150	63	69

'BMPR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.69

Table S3856. Gene #388: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BMPR1B MUTATED	0	0	1	2	0	0
BMPR1B WILD-TYPE	33	19	58	37	16	45

'BMPR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0556 (Fisher's exact test), Q value = 0.17

Table S3857. Gene #388: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BMPR1B MUTATED	1	0	0	0	2	0
BMPR1B WILD-TYPE	46	39	35	32	21	35

'PKN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.18

Table S3858. Gene #389: 'PKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PKN2 MUTATED	0	9	0	1	0
PKN2 WILD-TYPE	79	117	27	42	12

'PKN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.075

Table S3859. Gene #389: 'PKN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PKN2 MUTATED	0	7	0	2
PKN2 WILD-TYPE	71	69	34	61

Figure S1427. Get High-res Image Gene #389: 'PKN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PKN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3860. Gene #389: 'PKN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PKN2 MUTATED	0	2	2	2	2
PKN2 WILD-TYPE	16	60	49	63	53

'PKN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0895 (Fisher's exact test), Q value = 0.22

Table S3861. Gene #389: 'PKN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PKN2 MUTATED	1	4	1	2
PKN2 WILD-TYPE	97	40	49	55

'PKN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0477 (Fisher's exact test), Q value = 0.15

Table S3862. Gene #389: 'PKN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PKN2 MUTATED	5	1	0	2	0
PKN2 WILD-TYPE	57	58	40	35	59

Figure S1428. Get High-res Image Gene #389: 'PKN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PKN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0199 (Fisher's exact test), Q value = 0.095

Table S3863. Gene #389: 'PKN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PKN2 MUTATED	0	2	6
PKN2 WILD-TYPE	106	52	91

Figure S1429. Get High-res Image Gene #389: 'PKN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PKN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.15

Table S3864. Gene #389: 'PKN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PKN2 MUTATED	8	2	0
PKN2 WILD-TYPE	115	93	71

Figure S1430. Get High-res Image Gene #389: 'PKN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PKN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S3865. Gene #389: 'PKN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PKN2 MUTATED	7	3	0
PKN2 WILD-TYPE	150	60	69

'PKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.74

Table S3866. Gene #389: 'PKN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PKN2 MUTATED	3	1	2	1	0	1
PKN2 WILD-TYPE	30	18	57	38	16	44

'PKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.56

Table S3867. Gene #389: 'PKN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PKN2 MUTATED	4	1	2	1	0	0
PKN2 WILD-TYPE	43	38	33	31	23	35

'KIRREL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S3868. Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIRREL2 MUTATED	1	10	1	0	0
KIRREL2 WILD-TYPE	78	116	26	43	12

'KIRREL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.14

Table S3869. Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIRREL2 MUTATED	1	8	1	1
KIRREL2 WILD-TYPE	70	68	33	62

Figure S1431. Get High-res Image Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIRREL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.27

Table S3870. Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIRREL2 MUTATED	1	3	1	0	4
KIRREL2 WILD-TYPE	15	59	50	65	51

'KIRREL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0279 (Fisher's exact test), Q value = 0.11

Table S3871. Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIRREL2 MUTATED	3	5	1	0
KIRREL2 WILD-TYPE	95	39	49	57

Figure S1432. Get High-res Image Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S3872. Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIRREL2 MUTATED	4	1	1	4	1
KIRREL2 WILD-TYPE	58	58	39	33	58

'KIRREL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.038 (Fisher's exact test), Q value = 0.14

Table S3873. Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIRREL2 MUTATED	3	0	8
KIRREL2 WILD-TYPE	103	54	89

Figure S1433. Get High-res Image Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.067

Table S3874. Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIRREL2 MUTATED	10	2	0
KIRREL2 WILD-TYPE	113	93	71

Figure S1434. Get High-res Image Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0609 (Fisher's exact test), Q value = 0.18

Table S3875. Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIRREL2 MUTATED	10	2	0
KIRREL2 WILD-TYPE	147	61	69

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S3876. Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIRREL2 MUTATED	2	2	3	3	0	0
KIRREL2 WILD-TYPE	31	17	56	36	16	45

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0353 (Fisher's exact test), Q value = 0.13

Table S3877. Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIRREL2 MUTATED	6	0	2	2	0	0
KIRREL2 WILD-TYPE	41	39	33	30	23	35

Figure S1435. Get High-res Image Gene #390: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ANKRD40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.59

Table S3878. Gene #391: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ANKRD40 MUTATED	0	3	1	1	0
ANKRD40 WILD-TYPE	79	123	26	42	12

'ANKRD40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.65

Table S3879. Gene #391: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ANKRD40 MUTATED	0	2	1	1
ANKRD40 WILD-TYPE	71	74	33	62

'ANKRD40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.41

Table S3880. Gene #391: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ANKRD40 MUTATED	0	3	0	0	1
ANKRD40 WILD-TYPE	16	59	51	65	54

'ANKRD40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S3881. Gene #391: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ANKRD40 MUTATED	0	1	2	1
ANKRD40 WILD-TYPE	98	43	48	56

'ANKRD40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0987 (Fisher's exact test), Q value = 0.23

Table S3882. Gene #391: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ANKRD40 MUTATED	4	1	0	0	0
ANKRD40 WILD-TYPE	58	58	40	37	59

'ANKRD40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.73

Table S3883. Gene #391: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ANKRD40 MUTATED	1	1	3
ANKRD40 WILD-TYPE	105	53	94

'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.46

Table S3884. Gene #391: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ANKRD40 MUTATED	4	1	0
ANKRD40 WILD-TYPE	119	94	71

'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.63

Table S3885. Gene #391: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ANKRD40 MUTATED	4	1	0
ANKRD40 WILD-TYPE	153	62	69

'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.42

Table S3886. Gene #391: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ANKRD40 MUTATED	0	1	0	2	0	1
ANKRD40 WILD-TYPE	33	18	59	37	16	44

'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.66

Table S3887. Gene #391: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ANKRD40 MUTATED	2	1	0	0	1	0
ANKRD40 WILD-TYPE	45	38	35	32	22	35

'CHST15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.2

Table S3888. Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CHST15 MUTATED	1	10	2	0	0
CHST15 WILD-TYPE	78	116	25	43	12

'CHST15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0026 (Fisher's exact test), Q value = 0.032

Table S3889. Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CHST15 MUTATED	0	6	3	0
CHST15 WILD-TYPE	71	70	31	63

Figure S1436. Get High-res Image Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CHST15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.1

Table S3890. Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CHST15 MUTATED	2	6	1	0	3
CHST15 WILD-TYPE	14	56	50	65	52

Figure S1437. Get High-res Image Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CHST15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.083

Table S3891. Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CHST15 MUTATED	4	6	2	0
CHST15 WILD-TYPE	94	38	48	57

Figure S1438. Get High-res Image Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CHST15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00716 (Fisher's exact test), Q value = 0.055

Table S3892. Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CHST15 MUTATED	6	0	3	1	0
CHST15 WILD-TYPE	56	59	37	36	59

Figure S1439. Get High-res Image Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CHST15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.1

Table S3893. Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CHST15 MUTATED	2	0	8
CHST15 WILD-TYPE	104	54	89

Figure S1440. Get High-res Image Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CHST15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.13

Table S3894. Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CHST15 MUTATED	10	1	2
CHST15 WILD-TYPE	113	94	69

Figure S1441. Get High-res Image Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CHST15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.25

Table S3895. Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CHST15 MUTATED	11	1	1
CHST15 WILD-TYPE	146	62	68

'CHST15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.44

Table S3896. Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CHST15 MUTATED	0	0	3	4	0	1
CHST15 WILD-TYPE	33	19	56	35	16	44

'CHST15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 0.81

Table S3897. Gene #392: 'CHST15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CHST15 MUTATED	3	1	2	1	1	0
CHST15 WILD-TYPE	44	38	33	31	22	35

'YIF1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.66

Table S3898. Gene #393: 'YIF1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
YIF1A MUTATED	0	3	0	0	0
YIF1A WILD-TYPE	79	123	27	43	12

'YIF1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.63

Table S3899. Gene #393: 'YIF1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
YIF1A MUTATED	0	2	0	0	1
YIF1A WILD-TYPE	16	60	51	65	54

'YIF1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 0.14

Table S3900. Gene #393: 'YIF1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
YIF1A MUTATED	0	2	1	0
YIF1A WILD-TYPE	98	42	49	57

Figure S1442. Get High-res Image Gene #393: 'YIF1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'YIF1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.42

Table S3901. Gene #393: 'YIF1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
YIF1A MUTATED	2	0	0	1	0
YIF1A WILD-TYPE	60	59	40	36	59

'YIF1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.25

Table S3902. Gene #393: 'YIF1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
YIF1A MUTATED	0	0	3
YIF1A WILD-TYPE	106	54	94

'YIF1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S3903. Gene #393: 'YIF1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
YIF1A MUTATED	2	1	0
YIF1A WILD-TYPE	121	94	71

'YIF1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.56

Table S3904. Gene #393: 'YIF1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
YIF1A MUTATED	3	0	0
YIF1A WILD-TYPE	154	63	69

'OLFML3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.6

Table S3905. Gene #394: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OLFML3 MUTATED	0	4	0	0	0
OLFML3 WILD-TYPE	79	122	27	43	12

'OLFML3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S3906. Gene #394: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OLFML3 MUTATED	0	2	0	1
OLFML3 WILD-TYPE	71	74	34	62

'OLFML3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.62

Table S3907. Gene #394: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OLFML3 MUTATED	0	2	0	0	1
OLFML3 WILD-TYPE	16	60	51	65	54

'OLFML3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S3908. Gene #394: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OLFML3 MUTATED	1	2	0	0
OLFML3 WILD-TYPE	97	42	50	57

'OLFML3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.09 (Fisher's exact test), Q value = 0.22

Table S3909. Gene #394: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OLFML3 MUTATED	4	0	0
OLFML3 WILD-TYPE	119	95	71

'OLFML3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.56

Table S3910. Gene #394: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OLFML3 MUTATED	4	0	0
OLFML3 WILD-TYPE	153	63	69

'SH3KBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 0.18

Table S3911. Gene #395: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SH3KBP1 MUTATED	0	10	1	2	0
SH3KBP1 WILD-TYPE	79	116	26	41	12

'SH3KBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.39

Table S3912. Gene #395: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SH3KBP1 MUTATED	1	5	2	1
SH3KBP1 WILD-TYPE	70	71	32	62

'SH3KBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.44

Table S3913. Gene #395: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SH3KBP1 MUTATED	1	3	5	1	2
SH3KBP1 WILD-TYPE	15	59	46	64	53

'SH3KBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0434 (Fisher's exact test), Q value = 0.15

Table S3914. Gene #395: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SH3KBP1 MUTATED	3	6	2	1
SH3KBP1 WILD-TYPE	95	38	48	56

Figure S1443. Get High-res Image Gene #395: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SH3KBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.089

Table S3915. Gene #395: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SH3KBP1 MUTATED	7	1	1	1	0
SH3KBP1 WILD-TYPE	55	58	39	36	59

Figure S1444. Get High-res Image Gene #395: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SH3KBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S3916. Gene #395: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SH3KBP1 MUTATED	2	1	7
SH3KBP1 WILD-TYPE	104	53	90

'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00888 (Fisher's exact test), Q value = 0.062

Table S3917. Gene #395: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SH3KBP1 MUTATED	11	1	1
SH3KBP1 WILD-TYPE	112	94	70

Figure S1445. Get High-res Image Gene #395: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.25

Table S3918. Gene #395: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SH3KBP1 MUTATED	11	1	1
SH3KBP1 WILD-TYPE	146	62	68

'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.54

Table S3919. Gene #395: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SH3KBP1 MUTATED	2	2	1	1	0	1
SH3KBP1 WILD-TYPE	31	17	58	38	16	44

'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.7

Table S3920. Gene #395: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SH3KBP1 MUTATED	3	1	1	2	0	0
SH3KBP1 WILD-TYPE	44	38	34	30	23	35

'SPHK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.66

Table S3921. Gene #396: 'SPHK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SPHK2 MUTATED	0	3	0	0	0
SPHK2 WILD-TYPE	79	123	27	43	12

'SPHK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.33

Table S3922. Gene #396: 'SPHK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SPHK2 MUTATED	3	0	0
SPHK2 WILD-TYPE	120	95	71

'SPHK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.56

Table S3923. Gene #396: 'SPHK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SPHK2 MUTATED	3	0	0
SPHK2 WILD-TYPE	154	63	69

'TMEM63A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0699 (Fisher's exact test), Q value = 0.19

Table S3924. Gene #397: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TMEM63A MUTATED	0	7	2	1	1
TMEM63A WILD-TYPE	79	119	25	42	11

'TMEM63A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.13

Table S3925. Gene #397: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TMEM63A MUTATED	0	4	3	1
TMEM63A WILD-TYPE	71	72	31	62

Figure S1446. Get High-res Image Gene #397: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TMEM63A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.48

Table S3926. Gene #397: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TMEM63A MUTATED	1	5	1	1	2
TMEM63A WILD-TYPE	15	57	50	64	53

'TMEM63A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S3927. Gene #397: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TMEM63A MUTATED	2	3	4	1
TMEM63A WILD-TYPE	96	41	46	56

'TMEM63A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 0.15

Table S3928. Gene #397: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TMEM63A MUTATED	6	1	1	1	0
TMEM63A WILD-TYPE	56	58	39	36	59

Figure S1447. Get High-res Image Gene #397: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TMEM63A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S3929. Gene #397: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TMEM63A MUTATED	2	1	6
TMEM63A WILD-TYPE	104	53	91

'TMEM63A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.31

Table S3930. Gene #397: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TMEM63A MUTATED	8	2	1
TMEM63A WILD-TYPE	115	93	70

'TMEM63A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S3931. Gene #397: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TMEM63A MUTATED	9	2	0
TMEM63A WILD-TYPE	148	61	69

'TMEM63A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.44

Table S3932. Gene #397: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TMEM63A MUTATED	0	0	3	4	0	1
TMEM63A WILD-TYPE	33	19	56	35	16	44

'TMEM63A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0478 (Fisher's exact test), Q value = 0.15

Table S3933. Gene #397: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TMEM63A MUTATED	1	1	3	0	3	0
TMEM63A WILD-TYPE	46	38	32	32	20	35

Figure S1448. Get High-res Image Gene #397: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.01

Table S3934. Gene #398: 'NID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NID2 MUTATED	0	17	0	1	0
NID2 WILD-TYPE	79	109	27	42	12

Figure S1449. Get High-res Image Gene #398: 'NID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0997 (Fisher's exact test), Q value = 0.23

Table S3935. Gene #398: 'NID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NID2 MUTATED	1	8	1	3
NID2 WILD-TYPE	70	68	33	60

'NID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.59

Table S3936. Gene #398: 'NID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NID2 MUTATED	1	4	6	2	4
NID2 WILD-TYPE	15	58	45	63	51

'NID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.11

Table S3937. Gene #398: 'NID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NID2 MUTATED	5	8	2	2
NID2 WILD-TYPE	93	36	48	55

Figure S1450. Get High-res Image Gene #398: 'NID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.013

Table S3938. Gene #398: 'NID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NID2 MUTATED	10	2	3	0	0
NID2 WILD-TYPE	52	57	37	37	59

Figure S1451. Get High-res Image Gene #398: 'NID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S3939. Gene #398: 'NID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NID2 MUTATED	3	3	9
NID2 WILD-TYPE	103	51	88

'NID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00202 (Fisher's exact test), Q value = 0.028

Table S3940. Gene #398: 'NID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NID2 MUTATED	15	2	1
NID2 WILD-TYPE	108	93	70

Figure S1452. Get High-res Image Gene #398: 'NID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0845 (Fisher's exact test), Q value = 0.21

Table S3941. Gene #398: 'NID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NID2 MUTATED	14	3	1
NID2 WILD-TYPE	143	60	68

'NID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.7

Table S3942. Gene #398: 'NID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NID2 MUTATED	1	2	4	3	0	1
NID2 WILD-TYPE	32	17	55	36	16	44

'NID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.42

Table S3943. Gene #398: 'NID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NID2 MUTATED	4	1	4	1	1	0
NID2 WILD-TYPE	43	38	31	31	22	35

'FOXQ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.66

Table S3944. Gene #399: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FOXQ1 MUTATED	0	3	0	0	0
FOXQ1 WILD-TYPE	79	123	27	43	12

'FOXQ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.45

Table S3945. Gene #399: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FOXQ1 MUTATED	2	0	1	0	0
FOXQ1 WILD-TYPE	60	59	39	37	59

'FOXQ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S3946. Gene #399: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FOXQ1 MUTATED	0	0	3
FOXQ1 WILD-TYPE	106	54	94

'FOXQ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.33

Table S3947. Gene #399: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FOXQ1 MUTATED	3	0	0
FOXQ1 WILD-TYPE	120	95	71

'FOXQ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3948. Gene #399: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FOXQ1 MUTATED	2	0	1
FOXQ1 WILD-TYPE	155	63	68

'SUCLG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.44

Table S3949. Gene #400: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SUCLG2 MUTATED	0	5	0	0	0
SUCLG2 WILD-TYPE	79	121	27	43	12

'SUCLG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.43

Table S3950. Gene #400: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SUCLG2 MUTATED	0	3	0	1
SUCLG2 WILD-TYPE	71	73	34	62

'SUCLG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.69

Table S3951. Gene #400: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SUCLG2 MUTATED	0	1	1	0	2
SUCLG2 WILD-TYPE	16	61	50	65	53

'SUCLG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00877 (Fisher's exact test), Q value = 0.062

Table S3952. Gene #400: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SUCLG2 MUTATED	0	3	1	0
SUCLG2 WILD-TYPE	98	41	49	57

Figure S1453. Get High-res Image Gene #400: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SUCLG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.091

Table S3953. Gene #400: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SUCLG2 MUTATED	1	0	0	3	0
SUCLG2 WILD-TYPE	61	59	40	34	59

Figure S1454. Get High-res Image Gene #400: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SUCLG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.57

Table S3954. Gene #400: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SUCLG2 MUTATED	1	0	3
SUCLG2 WILD-TYPE	105	54	94

'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.12

Table S3955. Gene #400: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SUCLG2 MUTATED	5	0	0
SUCLG2 WILD-TYPE	118	95	71

Figure S1455. Get High-res Image Gene #400: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.63

Table S3956. Gene #400: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SUCLG2 MUTATED	4	1	0
SUCLG2 WILD-TYPE	153	62	69

'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.57

Table S3957. Gene #400: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SUCLG2 MUTATED	1	1	2	0	0	0
SUCLG2 WILD-TYPE	32	18	57	39	16	45

'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.4

Table S3958. Gene #400: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SUCLG2 MUTATED	3	0	1	0	0	0
SUCLG2 WILD-TYPE	44	39	34	32	23	35

'MOCS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.42

Table S3959. Gene #401: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MOCS2 MUTATED	0	2	0	2	0
MOCS2 WILD-TYPE	79	124	27	41	12

'MOCS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 0.93

Table S3960. Gene #401: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MOCS2 MUTATED	0	2	0	1	1
MOCS2 WILD-TYPE	16	60	51	64	54

'MOCS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 0.95

Table S3961. Gene #401: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MOCS2 MUTATED	1	1	1	1
MOCS2 WILD-TYPE	97	43	49	56

'MOCS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.79

Table S3962. Gene #401: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MOCS2 MUTATED	2	1	1	0	0
MOCS2 WILD-TYPE	60	58	39	37	59

'MOCS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.77

Table S3963. Gene #401: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MOCS2 MUTATED	2	0	2
MOCS2 WILD-TYPE	104	54	95

'MOCS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0904 (Fisher's exact test), Q value = 0.22

Table S3964. Gene #401: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MOCS2 MUTATED	4	0	0
MOCS2 WILD-TYPE	119	95	71

'MOCS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.56

Table S3965. Gene #401: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MOCS2 MUTATED	4	0	0
MOCS2 WILD-TYPE	153	63	69

'C7ORF58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.69

Table S3966. Gene #402: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C7ORF58 MUTATED	2	7	2	2	1
C7ORF58 WILD-TYPE	77	119	25	41	11

'C7ORF58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00306 (Fisher's exact test), Q value = 0.034

Table S3967. Gene #402: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C7ORF58 MUTATED	2	10	1	0
C7ORF58 WILD-TYPE	69	66	33	63

Figure S1456. Get High-res Image Gene #402: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C7ORF58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.59

Table S3968. Gene #402: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C7ORF58 MUTATED	1	5	3	1	3
C7ORF58 WILD-TYPE	15	57	48	64	52

'C7ORF58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.069

Table S3969. Gene #402: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C7ORF58 MUTATED	2	7	2	2
C7ORF58 WILD-TYPE	96	37	48	55

Figure S1457. Get High-res Image Gene #402: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.34

Table S3970. Gene #402: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C7ORF58 MUTATED	7	1	2	1	2
C7ORF58 WILD-TYPE	55	58	38	36	57

'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0711 (Fisher's exact test), Q value = 0.19

Table S3971. Gene #402: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C7ORF58 MUTATED	3	1	9
C7ORF58 WILD-TYPE	103	53	88

'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S3972. Gene #402: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C7ORF58 MUTATED	10	3	2
C7ORF58 WILD-TYPE	113	92	69

'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.54

Table S3973. Gene #402: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C7ORF58 MUTATED	11	2	2
C7ORF58 WILD-TYPE	146	61	67

'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.79

Table S3974. Gene #402: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C7ORF58 MUTATED	2	2	3	3	1	1
C7ORF58 WILD-TYPE	31	17	56	36	15	44

'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 0.79

Table S3975. Gene #402: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C7ORF58 MUTATED	5	1	2	2	1	1
C7ORF58 WILD-TYPE	42	38	33	30	22	34

'B3GNT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S3976. Gene #403: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
B3GNT5 MUTATED	0	8	0	2	0
B3GNT5 WILD-TYPE	79	118	27	41	12

'B3GNT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.56

Table S3977. Gene #403: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
B3GNT5 MUTATED	1	5	1	2
B3GNT5 WILD-TYPE	70	71	33	61

'B3GNT5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.63

Table S3978. Gene #403: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
B3GNT5 MUTATED	1	3	3	1	1
B3GNT5 WILD-TYPE	15	59	48	64	54

'B3GNT5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.45

Table S3979. Gene #403: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
B3GNT5 MUTATED	2	3	3	1
B3GNT5 WILD-TYPE	96	41	47	56

'B3GNT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.16

Table S3980. Gene #403: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
B3GNT5 MUTATED	6	1	1	2	0
B3GNT5 WILD-TYPE	56	58	39	35	59

Figure S1458. Get High-res Image Gene #403: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'B3GNT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.55

Table S3981. Gene #403: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
B3GNT5 MUTATED	3	1	6
B3GNT5 WILD-TYPE	103	53	91

'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.066

Table S3982. Gene #403: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
B3GNT5 MUTATED	9	1	0
B3GNT5 WILD-TYPE	114	94	71

Figure S1459. Get High-res Image Gene #403: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0583 (Fisher's exact test), Q value = 0.17

Table S3983. Gene #403: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
B3GNT5 MUTATED	9	1	0
B3GNT5 WILD-TYPE	148	62	69

'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.52

Table S3984. Gene #403: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
B3GNT5 MUTATED	2	1	2	3	0	0
B3GNT5 WILD-TYPE	31	18	57	36	16	45

'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.4

Table S3985. Gene #403: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
B3GNT5 MUTATED	3	0	2	1	2	0
B3GNT5 WILD-TYPE	44	39	33	31	21	35

'CAMTA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.001 (Fisher's exact test), Q value = 0.018

Table S3986. Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CAMTA2 MUTATED	0	15	1	0	0
CAMTA2 WILD-TYPE	79	111	26	43	12

Figure S1460. Get High-res Image Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CAMTA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00057 (Fisher's exact test), Q value = 0.013

Table S3987. Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CAMTA2 MUTATED	1	10	4	0
CAMTA2 WILD-TYPE	70	66	30	63

Figure S1461. Get High-res Image Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CAMTA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S3988. Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CAMTA2 MUTATED	1	4	4	0	4
CAMTA2 WILD-TYPE	15	58	47	65	51

'CAMTA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00619 (Fisher's exact test), Q value = 0.051

Table S3989. Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CAMTA2 MUTATED	2	7	3	1
CAMTA2 WILD-TYPE	96	37	47	56

Figure S1462. Get High-res Image Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CAMTA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.094

Table S3990. Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CAMTA2 MUTATED	6	1	3	4	0
CAMTA2 WILD-TYPE	56	58	37	33	59

Figure S1463. Get High-res Image Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CAMTA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.14

Table S3991. Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CAMTA2 MUTATED	3	1	10
CAMTA2 WILD-TYPE	103	53	87

Figure S1464. Get High-res Image Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CAMTA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00697 (Fisher's exact test), Q value = 0.054

Table S3992. Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CAMTA2 MUTATED	13	2	1
CAMTA2 WILD-TYPE	110	93	70

Figure S1465. Get High-res Image Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CAMTA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.03 (Fisher's exact test), Q value = 0.12

Table S3993. Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CAMTA2 MUTATED	14	1	1
CAMTA2 WILD-TYPE	143	62	68

Figure S1466. Get High-res Image Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CAMTA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00239 (Fisher's exact test), Q value = 0.031

Table S3994. Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CAMTA2 MUTATED	1	4	9	1	0	0
CAMTA2 WILD-TYPE	32	15	50	38	16	45

Figure S1467. Get High-res Image Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CAMTA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00323 (Fisher's exact test), Q value = 0.035

Table S3995. Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CAMTA2 MUTATED	5	0	7	1	2	0
CAMTA2 WILD-TYPE	42	39	28	31	21	35

Figure S1468. Get High-res Image Gene #404: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PLA2G15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.41

Table S3996. Gene #405: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLA2G15 MUTATED	1	6	2	0	0
PLA2G15 WILD-TYPE	78	120	25	43	12

'PLA2G15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.63

Table S3997. Gene #405: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLA2G15 MUTATED	1	4	1	1
PLA2G15 WILD-TYPE	70	72	33	62

'PLA2G15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S3998. Gene #405: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PLA2G15 MUTATED	1	4	2	0	1
PLA2G15 WILD-TYPE	15	58	49	65	54

'PLA2G15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.074

Table S3999. Gene #405: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PLA2G15 MUTATED	2	5	1	0
PLA2G15 WILD-TYPE	96	39	49	57

Figure S1469. Get High-res Image Gene #405: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLA2G15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.54

Table S4000. Gene #405: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PLA2G15 MUTATED	3	0	2	1	1
PLA2G15 WILD-TYPE	59	59	38	36	58

'PLA2G15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00142 (Fisher's exact test), Q value = 0.022

Table S4001. Gene #405: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PLA2G15 MUTATED	0	0	7
PLA2G15 WILD-TYPE	106	54	90

Figure S1470. Get High-res Image Gene #405: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.3

Table S4002. Gene #405: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PLA2G15 MUTATED	7	1	1
PLA2G15 WILD-TYPE	116	94	70

'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S4003. Gene #405: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PLA2G15 MUTATED	7	1	1
PLA2G15 WILD-TYPE	150	62	68

'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S4004. Gene #405: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PLA2G15 MUTATED	1	0	3	1	0	1
PLA2G15 WILD-TYPE	32	19	56	38	16	44

'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 0.87

Table S4005. Gene #405: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PLA2G15 MUTATED	2	1	2	1	0	0
PLA2G15 WILD-TYPE	45	38	33	31	23	35

'PHKB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.17

Table S4006. Gene #406: 'PHKB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PHKB MUTATED	0	2	2	1	1
PHKB WILD-TYPE	79	124	25	42	11

'PHKB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00364 (Fisher's exact test), Q value = 0.037

Table S4007. Gene #406: 'PHKB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PHKB MUTATED	0	6	0	0
PHKB WILD-TYPE	71	70	34	63

Figure S1471. Get High-res Image Gene #406: 'PHKB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHKB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.83

Table S4008. Gene #406: 'PHKB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PHKB MUTATED	0	1	0	1	2
PHKB WILD-TYPE	16	61	51	64	53

'PHKB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.078

Table S4009. Gene #406: 'PHKB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PHKB MUTATED	0	3	0	1
PHKB WILD-TYPE	98	41	50	56

Figure S1472. Get High-res Image Gene #406: 'PHKB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PHKB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.64

Table S4010. Gene #406: 'PHKB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PHKB MUTATED	3	1	1	1	0
PHKB WILD-TYPE	59	58	39	36	59

'PHKB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 0.13

Table S4011. Gene #406: 'PHKB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PHKB MUTATED	0	1	5
PHKB WILD-TYPE	106	53	92

Figure S1473. Get High-res Image Gene #406: 'PHKB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PHKB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.29

Table S4012. Gene #406: 'PHKB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PHKB MUTATED	5	1	0
PHKB WILD-TYPE	118	94	71

'PHKB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.49

Table S4013. Gene #406: 'PHKB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PHKB MUTATED	5	1	0
PHKB WILD-TYPE	152	62	69

'PHKB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.12

Table S4014. Gene #406: 'PHKB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PHKB MUTATED	1	3	0	1	0	1
PHKB WILD-TYPE	32	16	59	38	16	44

Figure S1474. Get High-res Image Gene #406: 'PHKB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PHKB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.48

Table S4015. Gene #406: 'PHKB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PHKB MUTATED	3	1	0	2	0	0
PHKB WILD-TYPE	44	38	35	30	23	35

'CEP120 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0419 (Fisher's exact test), Q value = 0.14

Table S4016. Gene #407: 'CEP120 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CEP120 MUTATED	0	9	1	0	0
CEP120 WILD-TYPE	79	117	26	43	12

Figure S1475. Get High-res Image Gene #407: 'CEP120 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CEP120 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.26

Table S4017. Gene #407: 'CEP120 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CEP120 MUTATED	0	5	1	2
CEP120 WILD-TYPE	71	71	33	61

'CEP120 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0885 (Fisher's exact test), Q value = 0.22

Table S4018. Gene #407: 'CEP120 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CEP120 MUTATED	2	2	0	1	3
CEP120 WILD-TYPE	14	60	51	64	52

'CEP120 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.29

Table S4019. Gene #407: 'CEP120 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CEP120 MUTATED	2	4	1	1
CEP120 WILD-TYPE	96	40	49	56

'CEP120 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S4020. Gene #407: 'CEP120 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CEP120 MUTATED	5	1	1	1	0
CEP120 WILD-TYPE	57	58	39	36	59

'CEP120 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0894 (Fisher's exact test), Q value = 0.22

Table S4021. Gene #407: 'CEP120 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CEP120 MUTATED	1	1	6
CEP120 WILD-TYPE	105	53	91

'CEP120 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0822 (Fisher's exact test), Q value = 0.21

Table S4022. Gene #407: 'CEP120 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CEP120 MUTATED	8	1	1
CEP120 WILD-TYPE	115	94	70

'CEP120 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.059 (Fisher's exact test), Q value = 0.17

Table S4023. Gene #407: 'CEP120 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CEP120 MUTATED	9	1	0
CEP120 WILD-TYPE	148	62	69

'CEP120 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.85

Table S4024. Gene #407: 'CEP120 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CEP120 MUTATED	1	0	3	3	0	1
CEP120 WILD-TYPE	32	19	56	36	16	44

'CEP120 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 0.72

Table S4025. Gene #407: 'CEP120 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CEP120 MUTATED	2	1	3	1	1	0
CEP120 WILD-TYPE	45	38	32	31	22	35

'SERPINB8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.38

Table S4026. Gene #408: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SERPINB8 MUTATED	1	6	0	0	1
SERPINB8 WILD-TYPE	78	120	27	43	11

'SERPINB8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.39

Table S4027. Gene #408: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SERPINB8 MUTATED	1	5	0	1
SERPINB8 WILD-TYPE	70	71	34	62

'SERPINB8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 0.14

Table S4028. Gene #408: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SERPINB8 MUTATED	1	4	1	0	0
SERPINB8 WILD-TYPE	15	58	50	65	55

Figure S1476. Get High-res Image Gene #408: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SERPINB8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0801 (Fisher's exact test), Q value = 0.2

Table S4029. Gene #408: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SERPINB8 MUTATED	1	2	3	0
SERPINB8 WILD-TYPE	97	42	47	57

'SERPINB8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.18

Table S4030. Gene #408: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SERPINB8 MUTATED	4	0	1	2	0
SERPINB8 WILD-TYPE	58	59	39	35	59

'SERPINB8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.047 (Fisher's exact test), Q value = 0.15

Table S4031. Gene #408: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SERPINB8 MUTATED	1	0	6
SERPINB8 WILD-TYPE	105	54	91

Figure S1477. Get High-res Image Gene #408: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.75

Table S4032. Gene #408: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SERPINB8 MUTATED	5	2	1
SERPINB8 WILD-TYPE	118	93	70

'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 0.86

Table S4033. Gene #408: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SERPINB8 MUTATED	5	2	1
SERPINB8 WILD-TYPE	152	61	68

'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S4034. Gene #408: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SERPINB8 MUTATED	0	2	3	1	0	0
SERPINB8 WILD-TYPE	33	17	56	38	16	45

'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.5

Table S4035. Gene #408: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SERPINB8 MUTATED	2	0	2	2	0	0
SERPINB8 WILD-TYPE	45	39	33	30	23	35

'EXO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.085

Table S4036. Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EXO1 MUTATED	0	13	1	2	0
EXO1 WILD-TYPE	79	113	26	41	12

Figure S1478. Get High-res Image Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EXO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0051

Table S4037. Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EXO1 MUTATED	0	10	3	0
EXO1 WILD-TYPE	71	66	31	63

Figure S1479. Get High-res Image Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EXO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.28

Table S4038. Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EXO1 MUTATED	0	7	4	1	2
EXO1 WILD-TYPE	16	55	47	64	53

'EXO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S4039. Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EXO1 MUTATED	0	10	3	1
EXO1 WILD-TYPE	98	34	47	56

Figure S1480. Get High-res Image Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EXO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00858 (Fisher's exact test), Q value = 0.062

Table S4040. Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EXO1 MUTATED	8	2	1	4	0
EXO1 WILD-TYPE	54	57	39	33	59

Figure S1481. Get High-res Image Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EXO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00316 (Fisher's exact test), Q value = 0.034

Table S4041. Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EXO1 MUTATED	2	1	12
EXO1 WILD-TYPE	104	53	85

Figure S1482. Get High-res Image Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EXO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00676 (Fisher's exact test), Q value = 0.054

Table S4042. Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EXO1 MUTATED	13	2	1
EXO1 WILD-TYPE	110	93	70

Figure S1483. Get High-res Image Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EXO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.067

Table S4043. Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EXO1 MUTATED	14	2	0
EXO1 WILD-TYPE	143	61	69

Figure S1484. Get High-res Image Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EXO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.62

Table S4044. Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EXO1 MUTATED	1	3	4	2	0	2
EXO1 WILD-TYPE	32	16	55	37	16	43

'EXO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.41

Table S4045. Gene #409: 'EXO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EXO1 MUTATED	4	2	4	2	0	0
EXO1 WILD-TYPE	43	37	31	30	23	35

'WDR59 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.52

Table S4046. Gene #410: 'WDR59 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WDR59 MUTATED	3	6	0	0	1
WDR59 WILD-TYPE	76	120	27	43	11

'WDR59 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.35

Table S4047. Gene #410: 'WDR59 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WDR59 MUTATED	3	4	0	0
WDR59 WILD-TYPE	68	72	34	63

'WDR59 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 0.21

Table S4048. Gene #410: 'WDR59 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WDR59 MUTATED	1	1	3	0	4
WDR59 WILD-TYPE	15	61	48	65	51

'WDR59 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0815 (Fisher's exact test), Q value = 0.21

Table S4049. Gene #410: 'WDR59 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WDR59 MUTATED	4	4	1	0
WDR59 WILD-TYPE	94	40	49	57

'WDR59 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.47

Table S4050. Gene #410: 'WDR59 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WDR59 MUTATED	2	1	2	4	2
WDR59 WILD-TYPE	60	58	38	33	57

'WDR59 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0654 (Fisher's exact test), Q value = 0.18

Table S4051. Gene #410: 'WDR59 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WDR59 MUTATED	2	1	8
WDR59 WILD-TYPE	104	53	89

'WDR59 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S4052. Gene #410: 'WDR59 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WDR59 MUTATED	8	1	2
WDR59 WILD-TYPE	115	94	69

'WDR59 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.7

Table S4053. Gene #410: 'WDR59 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WDR59 MUTATED	8	1	2
WDR59 WILD-TYPE	149	62	67

'WDR59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.54

Table S4054. Gene #410: 'WDR59 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WDR59 MUTATED	1	2	1	1	1	1
WDR59 WILD-TYPE	32	17	58	38	15	44

'WDR59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.58

Table S4055. Gene #410: 'WDR59 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WDR59 MUTATED	4	1	0	1	0	1
WDR59 WILD-TYPE	43	38	35	31	23	34

'UNC50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0622 (Fisher's exact test), Q value = 0.18

Table S4056. Gene #411: 'UNC50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
UNC50 MUTATED	3	0	0	0	0
UNC50 WILD-TYPE	59	59	40	37	59

'UNC50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.25

Table S4057. Gene #411: 'UNC50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
UNC50 MUTATED	0	0	3
UNC50 WILD-TYPE	106	54	94

'UNC50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S4058. Gene #411: 'UNC50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
UNC50 MUTATED	3	0	0
UNC50 WILD-TYPE	120	95	71

'UNC50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.56

Table S4059. Gene #411: 'UNC50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
UNC50 MUTATED	3	0	0
UNC50 WILD-TYPE	154	63	69

'SOHLH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.64

Table S4060. Gene #412: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SOHLH2 MUTATED	5	4	2	2	1
SOHLH2 WILD-TYPE	74	122	25	41	11

'SOHLH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.38

Table S4061. Gene #412: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SOHLH2 MUTATED	4	7	1	1
SOHLH2 WILD-TYPE	67	69	33	62

'SOHLH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 0.99

Table S4062. Gene #412: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SOHLH2 MUTATED	0	3	3	4	2
SOHLH2 WILD-TYPE	16	59	48	61	53

'SOHLH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 0.82

Table S4063. Gene #412: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SOHLH2 MUTATED	5	3	1	3
SOHLH2 WILD-TYPE	93	41	49	54

'SOHLH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.6

Table S4064. Gene #412: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SOHLH2 MUTATED	2	3	3	3	1
SOHLH2 WILD-TYPE	60	56	37	34	58

'SOHLH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.32

Table S4065. Gene #412: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SOHLH2 MUTATED	2	4	6
SOHLH2 WILD-TYPE	104	50	91

'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.57

Table S4066. Gene #412: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SOHLH2 MUTATED	4	5	5
SOHLH2 WILD-TYPE	119	90	66

'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.43

Table S4067. Gene #412: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SOHLH2 MUTATED	5	4	5
SOHLH2 WILD-TYPE	152	59	64

'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 0.14

Table S4068. Gene #412: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SOHLH2 MUTATED	3	3	0	2	0	3
SOHLH2 WILD-TYPE	30	16	59	37	16	42

Figure S1485. Get High-res Image Gene #412: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.34

Table S4069. Gene #412: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SOHLH2 MUTATED	5	3	0	0	1	2
SOHLH2 WILD-TYPE	42	36	35	32	22	33

'SGK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.63

Table S4070. Gene #413: 'SGK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SGK3 MUTATED	0	4	0	1	0
SGK3 WILD-TYPE	79	122	27	42	12

'SGK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S4071. Gene #413: 'SGK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SGK3 MUTATED	0	3	0	0
SGK3 WILD-TYPE	71	73	34	63

'SGK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.32

Table S4072. Gene #413: 'SGK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SGK3 MUTATED	0	3	2	0	0
SGK3 WILD-TYPE	16	59	49	65	55

'SGK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00973 (Fisher's exact test), Q value = 0.065

Table S4073. Gene #413: 'SGK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SGK3 MUTATED	0	3	2	0
SGK3 WILD-TYPE	98	41	48	57

Figure S1486. Get High-res Image Gene #413: 'SGK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SGK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.43

Table S4074. Gene #413: 'SGK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SGK3 MUTATED	1	1	0	2	0
SGK3 WILD-TYPE	61	58	40	35	59

'SGK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 0.89

Table S4075. Gene #413: 'SGK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SGK3 MUTATED	1	1	2
SGK3 WILD-TYPE	105	53	95

'SGK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.46

Table S4076. Gene #413: 'SGK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SGK3 MUTATED	4	1	0
SGK3 WILD-TYPE	119	94	71

'SGK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.4

Table S4077. Gene #413: 'SGK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SGK3 MUTATED	5	0	0
SGK3 WILD-TYPE	152	63	69

'SLC25A17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S4078. Gene #414: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC25A17 MUTATED	0	2	1	0	1
SLC25A17 WILD-TYPE	79	124	26	43	11

'SLC25A17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.53

Table S4079. Gene #414: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC25A17 MUTATED	0	2	0	0	2
SLC25A17 WILD-TYPE	16	60	51	65	53

'SLC25A17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 0.83

Table S4080. Gene #414: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC25A17 MUTATED	2	1	1	0
SLC25A17 WILD-TYPE	96	43	49	57

'SLC25A17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.29

Table S4081. Gene #414: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC25A17 MUTATED	1	0	1	2	0
SLC25A17 WILD-TYPE	61	59	39	35	59

'SLC25A17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S4082. Gene #414: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC25A17 MUTATED	0	1	3
SLC25A17 WILD-TYPE	106	53	94

'SLC25A17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.6

Table S4083. Gene #414: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC25A17 MUTATED	3	1	0
SLC25A17 WILD-TYPE	120	94	71

'SLC25A17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 0.87

Table S4084. Gene #414: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC25A17 MUTATED	3	0	1
SLC25A17 WILD-TYPE	154	63	68

'MKL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S4085. Gene #415: 'MKL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MKL1 MUTATED	2	9	1	0	1
MKL1 WILD-TYPE	77	117	26	43	11

'MKL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 0.21

Table S4086. Gene #415: 'MKL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MKL1 MUTATED	1	7	1	1
MKL1 WILD-TYPE	70	69	33	62

'MKL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.24

Table S4087. Gene #415: 'MKL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MKL1 MUTATED	1	4	1	0	4
MKL1 WILD-TYPE	15	58	50	65	51

'MKL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.083

Table S4088. Gene #415: 'MKL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MKL1 MUTATED	2	5	3	0
MKL1 WILD-TYPE	96	39	47	57

Figure S1487. Get High-res Image Gene #415: 'MKL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MKL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S4089. Gene #415: 'MKL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MKL1 MUTATED	5	0	1	2	1
MKL1 WILD-TYPE	57	59	39	35	58

'MKL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00644 (Fisher's exact test), Q value = 0.052

Table S4090. Gene #415: 'MKL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MKL1 MUTATED	1	0	8
MKL1 WILD-TYPE	105	54	89

Figure S1488. Get High-res Image Gene #415: 'MKL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MKL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S4091. Gene #415: 'MKL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MKL1 MUTATED	9	2	2
MKL1 WILD-TYPE	114	93	69

'MKL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.74

Table S4092. Gene #415: 'MKL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MKL1 MUTATED	9	2	2
MKL1 WILD-TYPE	148	61	67

'MKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.48

Table S4093. Gene #415: 'MKL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MKL1 MUTATED	1	3	3	2	0	1
MKL1 WILD-TYPE	32	16	56	37	16	44

'MKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 0.79

Table S4094. Gene #415: 'MKL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MKL1 MUTATED	3	1	3	2	0	1
MKL1 WILD-TYPE	44	38	32	30	23	34

'ACP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.44

Table S4095. Gene #416: 'ACP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ACP1 MUTATED	0	5	0	0	0
ACP1 WILD-TYPE	79	121	27	43	12

'ACP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.13

Table S4096. Gene #416: 'ACP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ACP1 MUTATED	0	4	0	0
ACP1 WILD-TYPE	71	72	34	63

Figure S1489. Get High-res Image Gene #416: 'ACP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ACP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.56

Table S4097. Gene #416: 'ACP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ACP1 MUTATED	0	2	1	0	0
ACP1 WILD-TYPE	16	60	50	65	55

'ACP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0849 (Fisher's exact test), Q value = 0.21

Table S4098. Gene #416: 'ACP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ACP1 MUTATED	0	2	0	1
ACP1 WILD-TYPE	98	42	50	56

'ACP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.39

Table S4099. Gene #416: 'ACP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ACP1 MUTATED	3	1	0	0	0
ACP1 WILD-TYPE	59	58	40	37	59

'ACP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.31

Table S4100. Gene #416: 'ACP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ACP1 MUTATED	0	1	3
ACP1 WILD-TYPE	106	53	94

'ACP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.41

Table S4101. Gene #416: 'ACP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ACP1 MUTATED	3	0	2
ACP1 WILD-TYPE	120	95	69

'ACP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 0.79

Table S4102. Gene #416: 'ACP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ACP1 MUTATED	4	0	1
ACP1 WILD-TYPE	153	63	68

'ACP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00289 (Fisher's exact test), Q value = 0.033

Table S4103. Gene #416: 'ACP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ACP1 MUTATED	0	3	0	1	0	0
ACP1 WILD-TYPE	33	16	59	38	16	45

Figure S1490. Get High-res Image Gene #416: 'ACP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ACP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.35

Table S4104. Gene #416: 'ACP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ACP1 MUTATED	3	0	0	1	0	0
ACP1 WILD-TYPE	44	39	35	31	23	35

'KIAA1217 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.31

Table S4105. Gene #417: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1217 MUTATED	2	12	0	3	1
KIAA1217 WILD-TYPE	77	114	27	40	11

'KIAA1217 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00918 (Fisher's exact test), Q value = 0.063

Table S4106. Gene #417: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1217 MUTATED	2	12	1	2
KIAA1217 WILD-TYPE	69	64	33	61

Figure S1491. Get High-res Image Gene #417: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1217 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0894 (Fisher's exact test), Q value = 0.22

Table S4107. Gene #417: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIAA1217 MUTATED	0	5	7	1	3
KIAA1217 WILD-TYPE	16	57	44	64	52

'KIAA1217 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.068

Table S4108. Gene #417: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIAA1217 MUTATED	6	7	3	0
KIAA1217 WILD-TYPE	92	37	47	57

Figure S1492. Get High-res Image Gene #417: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1217 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0375 (Fisher's exact test), Q value = 0.14

Table S4109. Gene #417: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIAA1217 MUTATED	8	1	1	2	1
KIAA1217 WILD-TYPE	54	58	39	35	58

Figure S1493. Get High-res Image Gene #417: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1217 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00218 (Fisher's exact test), Q value = 0.029

Table S4110. Gene #417: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIAA1217 MUTATED	1	1	11
KIAA1217 WILD-TYPE	105	53	86

Figure S1494. Get High-res Image Gene #417: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0584 (Fisher's exact test), Q value = 0.17

Table S4111. Gene #417: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIAA1217 MUTATED	12	2	5
KIAA1217 WILD-TYPE	111	93	66

'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.4

Table S4112. Gene #417: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIAA1217 MUTATED	14	2	3
KIAA1217 WILD-TYPE	143	61	66

'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.38

Table S4113. Gene #417: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIAA1217 MUTATED	3	0	3	6	0	2
KIAA1217 WILD-TYPE	30	19	56	33	16	43

'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 0.89

Table S4114. Gene #417: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIAA1217 MUTATED	3	1	3	3	2	2
KIAA1217 WILD-TYPE	44	38	32	29	21	33

'YLPM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00944 (Fisher's exact test), Q value = 0.064

Table S4115. Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
YLPM1 MUTATED	1	15	0	1	1
YLPM1 WILD-TYPE	78	111	27	42	11

Figure S1495. Get High-res Image Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'YLPM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00855 (Fisher's exact test), Q value = 0.062

Table S4116. Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
YLPM1 MUTATED	0	7	4	2
YLPM1 WILD-TYPE	71	69	30	61

Figure S1496. Get High-res Image Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'YLPM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0412 (Fisher's exact test), Q value = 0.14

Table S4117. Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
YLPM1 MUTATED	1	10	2	2	2
YLPM1 WILD-TYPE	15	52	49	63	53

Figure S1497. Get High-res Image Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'YLPM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0056 (Fisher's exact test), Q value = 0.048

Table S4118. Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
YLPM1 MUTATED	2	6	7	2
YLPM1 WILD-TYPE	96	38	43	55

Figure S1498. Get High-res Image Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.19

Table S4119. Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
YLPM1 MUTATED	8	2	1	3	1
YLPM1 WILD-TYPE	54	57	39	34	58

'YLPM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.37

Table S4120. Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
YLPM1 MUTATED	4	2	9
YLPM1 WILD-TYPE	102	52	88

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00196 (Fisher's exact test), Q value = 0.027

Table S4121. Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
YLPM1 MUTATED	15	2	1
YLPM1 WILD-TYPE	108	93	70

Figure S1499. Get High-res Image Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0421 (Fisher's exact test), Q value = 0.14

Table S4122. Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
YLPM1 MUTATED	15	2	1
YLPM1 WILD-TYPE	142	61	68

Figure S1500. Get High-res Image Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.27

Table S4123. Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
YLPM1 MUTATED	3	0	6	3	0	0
YLPM1 WILD-TYPE	30	19	53	36	16	45

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.27

Table S4124. Gene #418: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
YLPM1 MUTATED	3	0	4	1	3	1
YLPM1 WILD-TYPE	44	39	31	31	20	34

'NEK7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.6

Table S4125. Gene #419: 'NEK7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NEK7 MUTATED	0	4	0	0	0
NEK7 WILD-TYPE	79	122	27	43	12

'NEK7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 0.91

Table S4126. Gene #419: 'NEK7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NEK7 MUTATED	1	2	0	0
NEK7 WILD-TYPE	70	74	34	63

'NEK7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.64

Table S4127. Gene #419: 'NEK7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NEK7 MUTATED	0	1	2	0	1
NEK7 WILD-TYPE	16	61	49	65	54

'NEK7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.4

Table S4128. Gene #419: 'NEK7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NEK7 MUTATED	1	2	1	0
NEK7 WILD-TYPE	97	42	49	57

'NEK7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.098

Table S4129. Gene #419: 'NEK7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NEK7 MUTATED	0	0	2	2	0
NEK7 WILD-TYPE	62	59	38	35	59

Figure S1501. Get High-res Image Gene #419: 'NEK7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NEK7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0481 (Fisher's exact test), Q value = 0.15

Table S4130. Gene #419: 'NEK7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NEK7 MUTATED	0	0	4
NEK7 WILD-TYPE	106	54	93

Figure S1502. Get High-res Image Gene #419: 'NEK7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NEK7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 0.22

Table S4131. Gene #419: 'NEK7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NEK7 MUTATED	4	0	0
NEK7 WILD-TYPE	119	95	71

'NEK7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 0.87

Table S4132. Gene #419: 'NEK7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NEK7 MUTATED	3	0	1
NEK7 WILD-TYPE	154	63	68

'NEK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.51

Table S4133. Gene #419: 'NEK7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NEK7 MUTATED	0	1	2	0	0	0
NEK7 WILD-TYPE	33	18	57	39	16	45

'NEK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0857 (Fisher's exact test), Q value = 0.21

Table S4134. Gene #419: 'NEK7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NEK7 MUTATED	3	0	0	0	0	0
NEK7 WILD-TYPE	44	39	35	32	23	35

'SAP130 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 0.18

Table S4135. Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SAP130 MUTATED	0	8	0	2	1
SAP130 WILD-TYPE	79	118	27	41	11

'SAP130 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00312 (Fisher's exact test), Q value = 0.034

Table S4136. Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SAP130 MUTATED	0	7	1	0
SAP130 WILD-TYPE	71	69	33	63

Figure S1503. Get High-res Image Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SAP130 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 0.91

Table S4137. Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SAP130 MUTATED	0	3	2	1	2
SAP130 WILD-TYPE	16	59	49	64	53

'SAP130 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.008

Table S4138. Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SAP130 MUTATED	0	6	1	1
SAP130 WILD-TYPE	98	38	49	56

Figure S1504. Get High-res Image Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SAP130 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0016 (Fisher's exact test), Q value = 0.024

Table S4139. Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SAP130 MUTATED	8	1	0	2	0
SAP130 WILD-TYPE	54	58	40	35	59

Figure S1505. Get High-res Image Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SAP130 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.07

Table S4140. Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SAP130 MUTATED	2	0	9
SAP130 WILD-TYPE	104	54	88

Figure S1506. Get High-res Image Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SAP130 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00852 (Fisher's exact test), Q value = 0.061

Table S4141. Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SAP130 MUTATED	9	0	2
SAP130 WILD-TYPE	114	95	69

Figure S1507. Get High-res Image Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SAP130 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00599 (Fisher's exact test), Q value = 0.05

Table S4142. Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SAP130 MUTATED	11	0	0
SAP130 WILD-TYPE	146	63	69

Figure S1508. Get High-res Image Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SAP130 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 0.18

Table S4143. Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SAP130 MUTATED	0	2	1	3	0	0
SAP130 WILD-TYPE	33	17	58	36	16	45

'SAP130 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.44

Table S4144. Gene #420: 'SAP130 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SAP130 MUTATED	3	0	1	2	0	0
SAP130 WILD-TYPE	44	39	34	30	23	35

'TLR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.8

Table S4145. Gene #421: 'TLR4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TLR4 MUTATED	8	7	2	3	1
TLR4 WILD-TYPE	71	119	25	40	11

'TLR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0477 (Fisher's exact test), Q value = 0.15

Table S4146. Gene #421: 'TLR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TLR4 MUTATED	5	10	1	1
TLR4 WILD-TYPE	66	66	33	62

Figure S1509. Get High-res Image Gene #421: 'TLR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TLR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.4

Table S4147. Gene #421: 'TLR4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TLR4 MUTATED	2	8	4	3	2
TLR4 WILD-TYPE	14	54	47	62	53

'TLR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0325 (Fisher's exact test), Q value = 0.13

Table S4148. Gene #421: 'TLR4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TLR4 MUTATED	9	4	6	0
TLR4 WILD-TYPE	89	40	44	57

Figure S1510. Get High-res Image Gene #421: 'TLR4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TLR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S4149. Gene #421: 'TLR4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TLR4 MUTATED	4	2	1	5	7
TLR4 WILD-TYPE	58	57	39	32	52

'TLR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 0.88

Table S4150. Gene #421: 'TLR4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TLR4 MUTATED	9	4	6
TLR4 WILD-TYPE	97	50	91

'TLR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S4151. Gene #421: 'TLR4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TLR4 MUTATED	10	3	8
TLR4 WILD-TYPE	113	92	63

'TLR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.14

Table S4152. Gene #421: 'TLR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TLR4 MUTATED	11	1	9
TLR4 WILD-TYPE	146	62	60

Figure S1511. Get High-res Image Gene #421: 'TLR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TLR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.54

Table S4153. Gene #421: 'TLR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TLR4 MUTATED	3	3	5	3	2	1
TLR4 WILD-TYPE	30	16	54	36	14	44

'TLR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S4154. Gene #421: 'TLR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TLR4 MUTATED	5	3	2	2	2	3
TLR4 WILD-TYPE	42	36	33	30	21	32

'DCHS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.44

Table S4155. Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DCHS1 MUTATED	4	18	2	4	1
DCHS1 WILD-TYPE	75	108	25	39	11

'DCHS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00099 (Fisher's exact test), Q value = 0.018

Table S4156. Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DCHS1 MUTATED	4	17	2	2
DCHS1 WILD-TYPE	67	59	32	61

Figure S1512. Get High-res Image Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DCHS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00186 (Fisher's exact test), Q value = 0.027

Table S4157. Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DCHS1 MUTATED	2	11	6	0	8
DCHS1 WILD-TYPE	14	51	45	65	47

Figure S1513. Get High-res Image Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DCHS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.01

Table S4158. Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DCHS1 MUTATED	6	13	6	2
DCHS1 WILD-TYPE	92	31	44	55

Figure S1514. Get High-res Image Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DCHS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.1

Table S4159. Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DCHS1 MUTATED	9	2	4	7	2
DCHS1 WILD-TYPE	53	57	36	30	57

Figure S1515. Get High-res Image Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DCHS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.075

Table S4160. Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DCHS1 MUTATED	6	2	16
DCHS1 WILD-TYPE	100	52	81

Figure S1516. Get High-res Image Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DCHS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.091

Table S4161. Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DCHS1 MUTATED	19	4	6
DCHS1 WILD-TYPE	104	91	65

Figure S1517. Get High-res Image Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DCHS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.26

Table S4162. Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DCHS1 MUTATED	21	3	5
DCHS1 WILD-TYPE	136	60	64

'DCHS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.51

Table S4163. Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DCHS1 MUTATED	4	2	9	3	0	2
DCHS1 WILD-TYPE	29	17	50	36	16	43

'DCHS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00419 (Fisher's exact test), Q value = 0.041

Table S4164. Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DCHS1 MUTATED	10	2	6	1	1	0
DCHS1 WILD-TYPE	37	37	29	31	22	35

Figure S1518. Get High-res Image Gene #422: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 0.095

Table S4165. Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IRS1 MUTATED	2	15	2	0	1
IRS1 WILD-TYPE	77	111	25	43	11

Figure S1519. Get High-res Image Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 0.14

Table S4166. Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IRS1 MUTATED	1	10	2	4
IRS1 WILD-TYPE	70	66	32	59

Figure S1520. Get High-res Image Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IRS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.12

Table S4167. Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IRS1 MUTATED	3	4	2	1	7
IRS1 WILD-TYPE	13	58	49	64	48

Figure S1521. Get High-res Image Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IRS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 0.12

Table S4168. Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IRS1 MUTATED	5	8	2	2
IRS1 WILD-TYPE	93	36	48	55

Figure S1522. Get High-res Image Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00898 (Fisher's exact test), Q value = 0.063

Table S4169. Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IRS1 MUTATED	11	2	2	2	1
IRS1 WILD-TYPE	51	57	38	35	58

Figure S1523. Get High-res Image Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.15

Table S4170. Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IRS1 MUTATED	4	2	12
IRS1 WILD-TYPE	102	52	85

Figure S1524. Get High-res Image Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00881 (Fisher's exact test), Q value = 0.062

Table S4171. Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IRS1 MUTATED	15	4	1
IRS1 WILD-TYPE	108	91	70

Figure S1525. Get High-res Image Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0716 (Fisher's exact test), Q value = 0.19

Table S4172. Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IRS1 MUTATED	15	4	1
IRS1 WILD-TYPE	142	59	68

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.57

Table S4173. Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IRS1 MUTATED	3	1	7	3	0	1
IRS1 WILD-TYPE	30	18	52	36	16	44

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.36

Table S4174. Gene #423: 'IRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IRS1 MUTATED	5	1	4	3	2	0
IRS1 WILD-TYPE	42	38	31	29	21	35

'DDX43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.33

Table S4175. Gene #424: 'DDX43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DDX43 MUTATED	1	7	1	0	1
DDX43 WILD-TYPE	78	119	26	43	11

'DDX43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.51

Table S4176. Gene #424: 'DDX43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DDX43 MUTATED	3	3	1	0
DDX43 WILD-TYPE	68	73	33	63

'DDX43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 0.18

Table S4177. Gene #424: 'DDX43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DDX43 MUTATED	0	1	0	1	5
DDX43 WILD-TYPE	16	61	51	64	50

'DDX43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S4178. Gene #424: 'DDX43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DDX43 MUTATED	1	3	1	2
DDX43 WILD-TYPE	97	41	49	55

'DDX43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 0.89

Table S4179. Gene #424: 'DDX43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DDX43 MUTATED	2	1	2	2	2
DDX43 WILD-TYPE	60	58	38	35	57

'DDX43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 0.88

Table S4180. Gene #424: 'DDX43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DDX43 MUTATED	4	1	4
DDX43 WILD-TYPE	102	53	93

'DDX43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S4181. Gene #424: 'DDX43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DDX43 MUTATED	7	1	2
DDX43 WILD-TYPE	116	94	69

'DDX43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.77

Table S4182. Gene #424: 'DDX43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DDX43 MUTATED	7	1	2
DDX43 WILD-TYPE	150	62	67

'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.52

Table S4183. Gene #424: 'DDX43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DDX43 MUTATED	1	1	1	2	1	0
DDX43 WILD-TYPE	32	18	58	37	15	45

'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.75

Table S4184. Gene #424: 'DDX43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DDX43 MUTATED	3	0	1	1	0	1
DDX43 WILD-TYPE	44	39	34	31	23	34

'MPRIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0486 (Fisher's exact test), Q value = 0.15

Table S4185. Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MPRIP MUTATED	1	11	2	0	0
MPRIP WILD-TYPE	78	115	25	43	12

Figure S1526. Get High-res Image Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MPRIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00494 (Fisher's exact test), Q value = 0.045

Table S4186. Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MPRIP MUTATED	0	8	0	2
MPRIP WILD-TYPE	71	68	34	61

Figure S1527. Get High-res Image Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MPRIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.27

Table S4187. Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MPRIP MUTATED	1	4	4	0	4
MPRIP WILD-TYPE	15	58	47	65	51

'MPRIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00348 (Fisher's exact test), Q value = 0.036

Table S4188. Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MPRIP MUTATED	5	7	1	0
MPRIP WILD-TYPE	93	37	49	57

Figure S1528. Get High-res Image Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MPRIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.28

Table S4189. Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MPRIP MUTATED	2	1	3	4	1
MPRIP WILD-TYPE	60	58	37	33	58

'MPRIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 0.14

Table S4190. Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MPRIP MUTATED	3	0	8
MPRIP WILD-TYPE	103	54	89

Figure S1529. Get High-res Image Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MPRIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.071

Table S4191. Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MPRIP MUTATED	11	3	0
MPRIP WILD-TYPE	112	92	71

Figure S1530. Get High-res Image Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MPRIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 0.13

Table S4192. Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MPRIP MUTATED	12	0	2
MPRIP WILD-TYPE	145	63	67

Figure S1531. Get High-res Image Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MPRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.7

Table S4193. Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MPRIP MUTATED	2	2	4	1	0	1
MPRIP WILD-TYPE	31	17	55	38	16	44

'MPRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.52

Table S4194. Gene #425: 'MPRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MPRIP MUTATED	5	1	2	0	1	1
MPRIP WILD-TYPE	42	38	33	32	22	34

'KRT24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.69

Table S4195. Gene #426: 'KRT24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KRT24 MUTATED	1	2	0	2	0
KRT24 WILD-TYPE	78	124	27	41	12

'KRT24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.41

Table S4196. Gene #426: 'KRT24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KRT24 MUTATED	1	2	2	0
KRT24 WILD-TYPE	70	74	32	63

'KRT24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.77

Table S4197. Gene #426: 'KRT24 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KRT24 MUTATED	0	2	1	0	1
KRT24 WILD-TYPE	16	60	50	65	54

'KRT24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.43

Table S4198. Gene #426: 'KRT24 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KRT24 MUTATED	1	1	2	0
KRT24 WILD-TYPE	97	43	48	57

'KRT24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.49

Table S4199. Gene #426: 'KRT24 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KRT24 MUTATED	2	0	1	1	0
KRT24 WILD-TYPE	60	59	39	36	59

'KRT24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.16

Table S4200. Gene #426: 'KRT24 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KRT24 MUTATED	0	0	4
KRT24 WILD-TYPE	106	54	93

'KRT24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S4201. Gene #426: 'KRT24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KRT24 MUTATED	4	0	1
KRT24 WILD-TYPE	119	95	70

'KRT24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S4202. Gene #426: 'KRT24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KRT24 MUTATED	4	0	1
KRT24 WILD-TYPE	153	63	68

'KRT24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.75

Table S4203. Gene #426: 'KRT24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KRT24 MUTATED	1	0	1	2	0	0
KRT24 WILD-TYPE	32	19	58	37	16	45

'KRT24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 0.84

Table S4204. Gene #426: 'KRT24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KRT24 MUTATED	1	0	1	0	1	1
KRT24 WILD-TYPE	46	39	34	32	22	34

'TIMM44 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S4205. Gene #427: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TIMM44 MUTATED	0	4	0	0	1
TIMM44 WILD-TYPE	79	122	27	43	11

'TIMM44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.077

Table S4206. Gene #427: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TIMM44 MUTATED	0	5	0	0
TIMM44 WILD-TYPE	71	71	34	63

Figure S1532. Get High-res Image Gene #427: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TIMM44 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.53

Table S4207. Gene #427: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TIMM44 MUTATED	0	2	0	0	2
TIMM44 WILD-TYPE	16	60	51	65	53

'TIMM44 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0338 (Fisher's exact test), Q value = 0.13

Table S4208. Gene #427: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TIMM44 MUTATED	0	2	2	0
TIMM44 WILD-TYPE	98	42	48	57

Figure S1533. Get High-res Image Gene #427: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TIMM44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.13

Table S4209. Gene #427: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TIMM44 MUTATED	4	0	0	1	0
TIMM44 WILD-TYPE	58	59	40	36	59

Figure S1534. Get High-res Image Gene #427: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TIMM44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.08

Table S4210. Gene #427: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TIMM44 MUTATED	0	0	5
TIMM44 WILD-TYPE	106	54	92

Figure S1535. Get High-res Image Gene #427: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TIMM44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.4

Table S4211. Gene #427: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TIMM44 MUTATED	3	0	2
TIMM44 WILD-TYPE	120	95	69

'TIMM44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.4

Table S4212. Gene #427: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TIMM44 MUTATED	5	0	0
TIMM44 WILD-TYPE	152	63	69

'TIMM44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.75

Table S4213. Gene #427: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TIMM44 MUTATED	1	0	1	2	0	0
TIMM44 WILD-TYPE	32	19	58	37	16	45

'TIMM44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.35

Table S4214. Gene #427: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TIMM44 MUTATED	3	0	0	1	0	0
TIMM44 WILD-TYPE	44	39	35	31	23	35

'UBC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.68

Table S4215. Gene #428: 'UBC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
UBC MUTATED	1	5	1	0	0
UBC WILD-TYPE	78	121	26	43	12

'UBC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.27

Table S4216. Gene #428: 'UBC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
UBC MUTATED	0	1	2	1
UBC WILD-TYPE	71	75	32	62

'UBC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.27

Table S4217. Gene #428: 'UBC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
UBC MUTATED	1	4	1	0	1
UBC WILD-TYPE	15	58	50	65	54

'UBC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.097

Table S4218. Gene #428: 'UBC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
UBC MUTATED	1	4	2	0
UBC WILD-TYPE	97	40	48	57

Figure S1536. Get High-res Image Gene #428: 'UBC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UBC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.26

Table S4219. Gene #428: 'UBC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
UBC MUTATED	3	0	1	0	0
UBC WILD-TYPE	59	59	39	37	59

'UBC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.05 (Fisher's exact test), Q value = 0.16

Table S4220. Gene #428: 'UBC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
UBC MUTATED	0	0	4
UBC WILD-TYPE	106	54	93

Figure S1537. Get High-res Image Gene #428: 'UBC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UBC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.066 (Fisher's exact test), Q value = 0.19

Table S4221. Gene #428: 'UBC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
UBC MUTATED	6	1	0
UBC WILD-TYPE	117	94	71

'UBC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S4222. Gene #428: 'UBC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
UBC MUTATED	6	1	0
UBC WILD-TYPE	151	62	69

'UBC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.78

Table S4223. Gene #428: 'UBC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
UBC MUTATED	0	0	3	0	0	1
UBC WILD-TYPE	33	19	56	39	16	44

'UBC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 0.72

Table S4224. Gene #428: 'UBC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
UBC MUTATED	1	1	2	0	0	0
UBC WILD-TYPE	46	38	33	32	23	35

'PPL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S4225. Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PPL MUTATED	1	10	2	2	0
PPL WILD-TYPE	78	116	25	41	12

'PPL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.059 (Fisher's exact test), Q value = 0.17

Table S4226. Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PPL MUTATED	1	8	3	2
PPL WILD-TYPE	70	68	31	61

'PPL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.073

Table S4227. Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PPL MUTATED	3	6	2	0	3
PPL WILD-TYPE	13	56	49	65	52

Figure S1538. Get High-res Image Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PPL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00083 (Fisher's exact test), Q value = 0.016

Table S4228. Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PPL MUTATED	3	8	3	0
PPL WILD-TYPE	95	36	47	57

Figure S1539. Get High-res Image Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PPL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00039 (Fisher's exact test), Q value = 0.01

Table S4229. Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PPL MUTATED	8	0	3	5	0
PPL WILD-TYPE	54	59	37	32	59

Figure S1540. Get High-res Image Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PPL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00371 (Fisher's exact test), Q value = 0.038

Table S4230. Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PPL MUTATED	4	0	12
PPL WILD-TYPE	102	54	85

Figure S1541. Get High-res Image Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PPL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0051

Table S4231. Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PPL MUTATED	15	1	0
PPL WILD-TYPE	108	94	71

Figure S1542. Get High-res Image Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PPL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.12

Table S4232. Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PPL MUTATED	14	1	1
PPL WILD-TYPE	143	62	68

Figure S1543. Get High-res Image Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.13

Table S4233. Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PPL MUTATED	2	3	7	1	0	0
PPL WILD-TYPE	31	16	52	38	16	45

Figure S1544. Get High-res Image Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0013 (Fisher's exact test), Q value = 0.021

Table S4234. Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PPL MUTATED	6	0	6	0	1	0
PPL WILD-TYPE	41	39	29	32	22	35

Figure S1545. Get High-res Image Gene #429: 'PPL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LRP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00316 (Fisher's exact test), Q value = 0.034

Table S4235. Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LRP1 MUTATED	2	23	2	3	0
LRP1 WILD-TYPE	77	103	25	40	12

Figure S1546. Get High-res Image Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00299 (Fisher's exact test), Q value = 0.034

Table S4236. Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LRP1 MUTATED	2	15	3	3
LRP1 WILD-TYPE	69	61	31	60

Figure S1547. Get High-res Image Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LRP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.26

Table S4237. Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LRP1 MUTATED	1	12	6	3	6
LRP1 WILD-TYPE	15	50	45	62	49

'LRP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S4238. Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LRP1 MUTATED	3	14	8	3
LRP1 WILD-TYPE	95	30	42	54

Figure S1548. Get High-res Image Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LRP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00269 (Fisher's exact test), Q value = 0.032

Table S4239. Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LRP1 MUTATED	12	2	2	7	2
LRP1 WILD-TYPE	50	57	38	30	57

Figure S1549. Get High-res Image Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LRP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00612 (Fisher's exact test), Q value = 0.05

Table S4240. Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LRP1 MUTATED	6	2	17
LRP1 WILD-TYPE	100	52	80

Figure S1550. Get High-res Image Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LRP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.012

Table S4241. Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LRP1 MUTATED	23	4	3
LRP1 WILD-TYPE	100	91	68

Figure S1551. Get High-res Image Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LRP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00272 (Fisher's exact test), Q value = 0.032

Table S4242. Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LRP1 MUTATED	25	3	2
LRP1 WILD-TYPE	132	60	67

Figure S1552. Get High-res Image Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.43

Table S4243. Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LRP1 MUTATED	2	3	7	6	0	2
LRP1 WILD-TYPE	31	16	52	33	16	43

'LRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 0.1

Table S4244. Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LRP1 MUTATED	8	1	4	1	5	1
LRP1 WILD-TYPE	39	38	31	31	18	34

Figure S1553. Get High-res Image Gene #430: 'LRP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 0.19

Table S4245. Gene #431: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CTNNB1 MUTATED	2	9	5	2	0
CTNNB1 WILD-TYPE	77	117	22	41	12

'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.36

Table S4246. Gene #431: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CTNNB1 MUTATED	2	7	4	3
CTNNB1 WILD-TYPE	69	69	30	60

'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S4247. Gene #431: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CTNNB1 MUTATED	3	5	1	3	4
CTNNB1 WILD-TYPE	13	57	50	62	51

'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0523 (Fisher's exact test), Q value = 0.16

Table S4248. Gene #431: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CTNNB1 MUTATED	3	7	3	3
CTNNB1 WILD-TYPE	95	37	47	54

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00374 (Fisher's exact test), Q value = 0.038

Table S4249. Gene #431: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CTNNB1 MUTATED	10	0	2	2	2
CTNNB1 WILD-TYPE	52	59	38	35	57

Figure S1554. Get High-res Image Gene #431: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.51

Table S4250. Gene #431: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CTNNB1 MUTATED	8	1	7
CTNNB1 WILD-TYPE	98	53	90

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.19

Table S4251. Gene #431: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CTNNB1 MUTATED	12	2	4
CTNNB1 WILD-TYPE	111	93	67

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.51

Table S4252. Gene #431: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CTNNB1 MUTATED	13	2	3
CTNNB1 WILD-TYPE	144	61	66

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.43

Table S4253. Gene #431: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CTNNB1 MUTATED	3	0	7	2	0	1
CTNNB1 WILD-TYPE	30	19	52	37	16	44

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.26

Table S4254. Gene #431: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CTNNB1 MUTATED	3	1	6	2	0	1
CTNNB1 WILD-TYPE	44	38	29	30	23	34

'KBTBD10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.094

Table S4255. Gene #432: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KBTBD10 MUTATED	0	3	0	0	2
KBTBD10 WILD-TYPE	79	123	27	43	10

Figure S1555. Get High-res Image Gene #432: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KBTBD10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.13

Table S4256. Gene #432: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KBTBD10 MUTATED	0	4	0	0
KBTBD10 WILD-TYPE	71	72	34	63

Figure S1556. Get High-res Image Gene #432: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KBTBD10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0868 (Fisher's exact test), Q value = 0.21

Table S4257. Gene #432: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KBTBD10 MUTATED	0	3	0	0	0
KBTBD10 WILD-TYPE	16	59	51	65	55

'KBTBD10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.7

Table S4258. Gene #432: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KBTBD10 MUTATED	1	1	1	0
KBTBD10 WILD-TYPE	97	43	49	57

'KBTBD10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.3

Table S4259. Gene #432: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KBTBD10 MUTATED	2	0	2	1	0
KBTBD10 WILD-TYPE	60	59	38	36	59

'KBTBD10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.082

Table S4260. Gene #432: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KBTBD10 MUTATED	0	0	5
KBTBD10 WILD-TYPE	106	54	92

Figure S1557. Get High-res Image Gene #432: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KBTBD10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.32

Table S4261. Gene #432: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KBTBD10 MUTATED	4	0	1
KBTBD10 WILD-TYPE	119	95	70

'KBTBD10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.4

Table S4262. Gene #432: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KBTBD10 MUTATED	5	0	0
KBTBD10 WILD-TYPE	152	63	69

'KBTBD10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 0.88

Table S4263. Gene #432: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KBTBD10 MUTATED	1	0	1	1	0	0
KBTBD10 WILD-TYPE	32	19	58	38	16	45

'KBTBD10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.71

Table S4264. Gene #432: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KBTBD10 MUTATED	2	0	1	0	0	0
KBTBD10 WILD-TYPE	45	39	34	32	23	35

'PUS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0426 (Fisher's exact test), Q value = 0.15

Table S4265. Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PUS7 MUTATED	0	9	1	0	0
PUS7 WILD-TYPE	79	117	26	43	12

Figure S1558. Get High-res Image Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PUS7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S4266. Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PUS7 MUTATED	0	4	2	2
PUS7 WILD-TYPE	71	72	32	61

'PUS7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0467 (Fisher's exact test), Q value = 0.15

Table S4267. Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PUS7 MUTATED	1	1	2	0	5
PUS7 WILD-TYPE	15	61	49	65	50

Figure S1559. Get High-res Image Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PUS7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0279 (Fisher's exact test), Q value = 0.11

Table S4268. Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PUS7 MUTATED	3	5	1	0
PUS7 WILD-TYPE	95	39	49	57

Figure S1560. Get High-res Image Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PUS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00966 (Fisher's exact test), Q value = 0.065

Table S4269. Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PUS7 MUTATED	4	0	0	3	0
PUS7 WILD-TYPE	58	59	40	34	59

Figure S1561. Get High-res Image Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PUS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0473 (Fisher's exact test), Q value = 0.15

Table S4270. Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PUS7 MUTATED	1	0	6
PUS7 WILD-TYPE	105	54	91

Figure S1562. Get High-res Image Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PUS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.069

Table S4271. Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PUS7 MUTATED	9	1	0
PUS7 WILD-TYPE	114	94	71

Figure S1563. Get High-res Image Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PUS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0571 (Fisher's exact test), Q value = 0.17

Table S4272. Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PUS7 MUTATED	9	1	0
PUS7 WILD-TYPE	148	62	69

'PUS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.7

Table S4273. Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PUS7 MUTATED	2	1	2	0	0	1
PUS7 WILD-TYPE	31	18	57	39	16	44

'PUS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 0.79

Table S4274. Gene #433: 'PUS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PUS7 MUTATED	3	1	1	1	0	0
PUS7 WILD-TYPE	44	38	34	31	23	35

'HEPACAM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 0.21

Table S4275. Gene #434: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HEPACAM2 MUTATED	0	6	2	0	0
HEPACAM2 WILD-TYPE	79	120	25	43	12

'HEPACAM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.74

Table S4276. Gene #434: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HEPACAM2 MUTATED	1	3	0	1
HEPACAM2 WILD-TYPE	70	73	34	62

'HEPACAM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 0.91

Table S4277. Gene #434: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HEPACAM2 MUTATED	0	3	2	1	2
HEPACAM2 WILD-TYPE	16	59	49	64	53

'HEPACAM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.56

Table S4278. Gene #434: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HEPACAM2 MUTATED	2	3	2	1
HEPACAM2 WILD-TYPE	96	41	48	56

'HEPACAM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.2

Table S4279. Gene #434: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HEPACAM2 MUTATED	3	1	0	3	0
HEPACAM2 WILD-TYPE	59	58	40	34	59

'HEPACAM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.44

Table S4280. Gene #434: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HEPACAM2 MUTATED	1	2	4
HEPACAM2 WILD-TYPE	105	52	93

'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S4281. Gene #434: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HEPACAM2 MUTATED	5	3	0
HEPACAM2 WILD-TYPE	118	92	71

'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.31

Table S4282. Gene #434: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HEPACAM2 MUTATED	7	1	0
HEPACAM2 WILD-TYPE	150	62	69

'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 0.97

Table S4283. Gene #434: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HEPACAM2 MUTATED	1	1	1	1	0	1
HEPACAM2 WILD-TYPE	32	18	58	38	16	44

'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.45

Table S4284. Gene #434: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HEPACAM2 MUTATED	3	1	0	0	1	0
HEPACAM2 WILD-TYPE	44	38	35	32	22	35

'PADI3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0912 (Fisher's exact test), Q value = 0.22

Table S4285. Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PADI3 MUTATED	0	8	1	2	1
PADI3 WILD-TYPE	79	118	26	41	11

'PADI3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00235 (Fisher's exact test), Q value = 0.03

Table S4286. Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PADI3 MUTATED	0	7	2	0
PADI3 WILD-TYPE	71	69	32	63

Figure S1564. Get High-res Image Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PADI3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.12

Table S4287. Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PADI3 MUTATED	1	5	5	0	1
PADI3 WILD-TYPE	15	57	46	65	54

Figure S1565. Get High-res Image Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PADI3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00277 (Fisher's exact test), Q value = 0.033

Table S4288. Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PADI3 MUTATED	4	7	1	0
PADI3 WILD-TYPE	94	37	49	57

Figure S1566. Get High-res Image Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PADI3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.17

Table S4289. Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PADI3 MUTATED	6	1	2	2	0
PADI3 WILD-TYPE	56	58	38	35	59

'PADI3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.074

Table S4290. Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PADI3 MUTATED	1	1	9
PADI3 WILD-TYPE	105	53	88

Figure S1567. Get High-res Image Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PADI3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00221 (Fisher's exact test), Q value = 0.03

Table S4291. Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PADI3 MUTATED	11	1	0
PADI3 WILD-TYPE	112	94	71

Figure S1568. Get High-res Image Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PADI3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S4292. Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PADI3 MUTATED	10	1	1
PADI3 WILD-TYPE	147	62	68

'PADI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.7

Table S4293. Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PADI3 MUTATED	0	1	4	1	0	1
PADI3 WILD-TYPE	33	18	55	38	16	44

'PADI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.63

Table S4294. Gene #435: 'PADI3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PADI3 MUTATED	2	1	3	1	0	0
PADI3 WILD-TYPE	45	38	32	31	23	35

'EVL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0762 (Fisher's exact test), Q value = 0.2

Table S4295. Gene #436: 'EVL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EVL MUTATED	0	6	0	0	1
EVL WILD-TYPE	79	120	27	43	11

'EVL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.43

Table S4296. Gene #436: 'EVL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EVL MUTATED	0	3	0	1
EVL WILD-TYPE	71	73	34	62

'EVL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 0.19

Table S4297. Gene #436: 'EVL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EVL MUTATED	0	4	0	0	3
EVL WILD-TYPE	16	58	51	65	52

'EVL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S4298. Gene #436: 'EVL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EVL MUTATED	1	2	3	1
EVL WILD-TYPE	97	42	47	56

'EVL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.35

Table S4299. Gene #436: 'EVL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EVL MUTATED	3	1	0	2	0
EVL WILD-TYPE	59	58	40	35	59

'EVL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 0.83

Table S4300. Gene #436: 'EVL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EVL MUTATED	2	2	2
EVL WILD-TYPE	104	52	95

'EVL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 0.86

Table S4301. Gene #436: 'EVL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EVL MUTATED	4	2	1
EVL WILD-TYPE	119	93	70

'EVL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.38

Table S4302. Gene #436: 'EVL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EVL MUTATED	6	1	0
EVL WILD-TYPE	151	62	69

'EVL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.57

Table S4303. Gene #436: 'EVL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EVL MUTATED	0	0	0	2	0	1
EVL WILD-TYPE	33	19	59	37	16	44

'EVL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.77

Table S4304. Gene #436: 'EVL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EVL MUTATED	1	1	0	0	1	0
EVL WILD-TYPE	46	38	35	32	22	35

'JHDM1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.3

Table S4305. Gene #437: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
JHDM1D MUTATED	1	6	2	0	1
JHDM1D WILD-TYPE	78	120	25	43	11

'JHDM1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00758 (Fisher's exact test), Q value = 0.057

Table S4306. Gene #437: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
JHDM1D MUTATED	1	7	0	0
JHDM1D WILD-TYPE	70	69	34	63

Figure S1569. Get High-res Image Gene #437: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'JHDM1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.37

Table S4307. Gene #437: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
JHDM1D MUTATED	1	2	3	0	3
JHDM1D WILD-TYPE	15	60	48	65	52

'JHDM1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.41

Table S4308. Gene #437: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
JHDM1D MUTATED	3	4	1	1
JHDM1D WILD-TYPE	95	40	49	56

'JHDM1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.51

Table S4309. Gene #437: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
JHDM1D MUTATED	5	1	1	2	1
JHDM1D WILD-TYPE	57	58	39	35	58

'JHDM1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0254 (Fisher's exact test), Q value = 0.11

Table S4310. Gene #437: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
JHDM1D MUTATED	1	1	8
JHDM1D WILD-TYPE	105	53	89

Figure S1570. Get High-res Image Gene #437: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'JHDM1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.087

Table S4311. Gene #437: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
JHDM1D MUTATED	8	0	2
JHDM1D WILD-TYPE	115	95	69

Figure S1571. Get High-res Image Gene #437: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'JHDM1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.36

Table S4312. Gene #437: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
JHDM1D MUTATED	8	0	2
JHDM1D WILD-TYPE	149	63	67

'JHDM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.43

Table S4313. Gene #437: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
JHDM1D MUTATED	2	2	3	1	0	0
JHDM1D WILD-TYPE	31	17	56	38	16	45

'JHDM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.63

Table S4314. Gene #437: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
JHDM1D MUTATED	3	0	2	2	0	1
JHDM1D WILD-TYPE	44	39	33	30	23	34

'CNKSR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 0.98

Table S4315. Gene #438: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CNKSR2 MUTATED	3	7	1	1	0
CNKSR2 WILD-TYPE	76	119	26	42	12

'CNKSR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4316. Gene #438: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CNKSR2 MUTATED	2	3	1	2
CNKSR2 WILD-TYPE	69	73	33	61

'CNKSR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00337 (Fisher's exact test), Q value = 0.036

Table S4317. Gene #438: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CNKSR2 MUTATED	4	3	3	0	2
CNKSR2 WILD-TYPE	12	59	48	65	53

Figure S1572. Get High-res Image Gene #438: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CNKSR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.34

Table S4318. Gene #438: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CNKSR2 MUTATED	6	3	3	0
CNKSR2 WILD-TYPE	92	41	47	57

'CNKSR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.61

Table S4319. Gene #438: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CNKSR2 MUTATED	3	3	0	3	2
CNKSR2 WILD-TYPE	59	56	40	34	57

'CNKSR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S4320. Gene #438: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CNKSR2 MUTATED	5	0	6
CNKSR2 WILD-TYPE	101	54	91

'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.092

Table S4321. Gene #438: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CNKSR2 MUTATED	10	1	1
CNKSR2 WILD-TYPE	113	94	70

Figure S1573. Get High-res Image Gene #438: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S4322. Gene #438: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CNKSR2 MUTATED	9	0	3
CNKSR2 WILD-TYPE	148	63	66

'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S4323. Gene #438: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CNKSR2 MUTATED	1	1	3	1	0	1
CNKSR2 WILD-TYPE	32	18	56	38	16	44

'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 0.9

Table S4324. Gene #438: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CNKSR2 MUTATED	2	1	2	1	1	0
CNKSR2 WILD-TYPE	45	38	33	31	22	35

'UBXN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.083

Table S4325. Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
UBXN6 MUTATED	0	10	1	0	1
UBXN6 WILD-TYPE	79	116	26	43	11

Figure S1574. Get High-res Image Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UBXN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0069

Table S4326. Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
UBXN6 MUTATED	0	10	1	0
UBXN6 WILD-TYPE	71	66	33	63

Figure S1575. Get High-res Image Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'UBXN6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.15

Table S4327. Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
UBXN6 MUTATED	0	6	2	0	1
UBXN6 WILD-TYPE	16	56	49	65	54

Figure S1576. Get High-res Image Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'UBXN6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00305 (Fisher's exact test), Q value = 0.034

Table S4328. Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
UBXN6 MUTATED	0	3	5	1
UBXN6 WILD-TYPE	98	41	45	56

Figure S1577. Get High-res Image Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.12

Table S4329. Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
UBXN6 MUTATED	6	1	1	3	0
UBXN6 WILD-TYPE	56	58	39	34	59

Figure S1578. Get High-res Image Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0655 (Fisher's exact test), Q value = 0.18

Table S4330. Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
UBXN6 MUTATED	2	1	8
UBXN6 WILD-TYPE	104	53	89

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00615 (Fisher's exact test), Q value = 0.051

Table S4331. Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
UBXN6 MUTATED	10	0	2
UBXN6 WILD-TYPE	113	95	69

Figure S1579. Get High-res Image Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0289 (Fisher's exact test), Q value = 0.12

Table S4332. Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
UBXN6 MUTATED	11	0	1
UBXN6 WILD-TYPE	146	63	68

Figure S1580. Get High-res Image Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00098 (Fisher's exact test), Q value = 0.018

Table S4333. Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
UBXN6 MUTATED	0	5	3	1	0	0
UBXN6 WILD-TYPE	33	14	56	38	16	45

Figure S1581. Get High-res Image Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0532 (Fisher's exact test), Q value = 0.16

Table S4334. Gene #439: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
UBXN6 MUTATED	5	0	3	1	0	0
UBXN6 WILD-TYPE	42	39	32	31	23	35

'GPATCH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.33

Table S4335. Gene #440: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPATCH2 MUTATED	0	6	1	0	0
GPATCH2 WILD-TYPE	79	120	26	43	12

'GPATCH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.33

Table S4336. Gene #440: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPATCH2 MUTATED	0	2	2	1
GPATCH2 WILD-TYPE	71	74	32	62

'GPATCH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 0.12

Table S4337. Gene #440: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GPATCH2 MUTATED	1	2	4	0	0
GPATCH2 WILD-TYPE	15	60	47	65	55

Figure S1582. Get High-res Image Gene #440: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GPATCH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00558 (Fisher's exact test), Q value = 0.048

Table S4338. Gene #440: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GPATCH2 MUTATED	1	5	1	0
GPATCH2 WILD-TYPE	97	39	49	57

Figure S1583. Get High-res Image Gene #440: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPATCH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.18

Table S4339. Gene #440: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GPATCH2 MUTATED	4	0	1	1	0
GPATCH2 WILD-TYPE	58	59	39	36	59

'GPATCH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S4340. Gene #440: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GPATCH2 MUTATED	1	0	5
GPATCH2 WILD-TYPE	105	54	92

'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 0.19

Table S4341. Gene #440: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GPATCH2 MUTATED	6	1	0
GPATCH2 WILD-TYPE	117	94	71

'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S4342. Gene #440: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GPATCH2 MUTATED	6	1	0
GPATCH2 WILD-TYPE	151	62	69

'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.52

Table S4343. Gene #440: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GPATCH2 MUTATED	0	0	4	0	0	1
GPATCH2 WILD-TYPE	33	19	55	39	16	44

'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.38

Table S4344. Gene #440: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GPATCH2 MUTATED	1	1	3	0	0	0
GPATCH2 WILD-TYPE	46	38	32	32	23	35

'ZFP36L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.62

Table S4345. Gene #441: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZFP36L2 MUTATED	1	4	1	1	1
ZFP36L2 WILD-TYPE	78	122	26	42	11

'ZFP36L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00773 (Fisher's exact test), Q value = 0.057

Table S4346. Gene #441: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZFP36L2 MUTATED	1	7	0	0
ZFP36L2 WILD-TYPE	70	69	34	63

Figure S1584. Get High-res Image Gene #441: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFP36L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 0.82

Table S4347. Gene #441: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZFP36L2 MUTATED	0	2	0	1	2
ZFP36L2 WILD-TYPE	16	60	51	64	53

'ZFP36L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00299 (Fisher's exact test), Q value = 0.034

Table S4348. Gene #441: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZFP36L2 MUTATED	0	4	0	1
ZFP36L2 WILD-TYPE	98	40	50	56

Figure S1585. Get High-res Image Gene #441: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.63

Table S4349. Gene #441: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZFP36L2 MUTATED	2	1	1	3	1
ZFP36L2 WILD-TYPE	60	58	39	34	58

'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0901 (Fisher's exact test), Q value = 0.22

Table S4350. Gene #441: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZFP36L2 MUTATED	1	1	6
ZFP36L2 WILD-TYPE	105	53	91

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.37

Table S4351. Gene #441: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZFP36L2 MUTATED	6	1	1
ZFP36L2 WILD-TYPE	117	94	70

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.31

Table S4352. Gene #441: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZFP36L2 MUTATED	7	1	0
ZFP36L2 WILD-TYPE	150	62	69

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.11

Table S4353. Gene #441: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZFP36L2 MUTATED	1	2	0	3	0	0
ZFP36L2 WILD-TYPE	32	17	59	36	16	45

Figure S1586. Get High-res Image Gene #441: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0214 (Fisher's exact test), Q value = 0.099

Table S4354. Gene #441: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZFP36L2 MUTATED	5	0	0	1	0	0
ZFP36L2 WILD-TYPE	42	39	35	31	23	35

Figure S1587. Get High-res Image Gene #441: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRICKLE4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S4355. Gene #442: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRICKLE4 MUTATED	0	4	1	0	1
PRICKLE4 WILD-TYPE	79	122	26	43	11

'PRICKLE4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4356. Gene #442: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRICKLE4 MUTATED	1	1	0	1
PRICKLE4 WILD-TYPE	70	75	34	62

'PRICKLE4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.47

Table S4357. Gene #442: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PRICKLE4 MUTATED	1	2	1	0	2
PRICKLE4 WILD-TYPE	15	60	50	65	53

'PRICKLE4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.47

Table S4358. Gene #442: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PRICKLE4 MUTATED	2	2	2	0
PRICKLE4 WILD-TYPE	96	42	48	57

'PRICKLE4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.28

Table S4359. Gene #442: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PRICKLE4 MUTATED	2	1	3	0	0
PRICKLE4 WILD-TYPE	60	58	37	37	59

'PRICKLE4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.74

Table S4360. Gene #442: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PRICKLE4 MUTATED	3	0	3
PRICKLE4 WILD-TYPE	103	54	94

'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.083

Table S4361. Gene #442: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PRICKLE4 MUTATED	6	0	0
PRICKLE4 WILD-TYPE	117	95	71

Figure S1588. Get High-res Image Gene #442: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.49

Table S4362. Gene #442: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PRICKLE4 MUTATED	5	1	0
PRICKLE4 WILD-TYPE	152	62	69

'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.51

Table S4363. Gene #442: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PRICKLE4 MUTATED	0	1	2	0	0	0
PRICKLE4 WILD-TYPE	33	18	57	39	16	45

'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.51

Table S4364. Gene #442: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PRICKLE4 MUTATED	1	0	2	0	0	0
PRICKLE4 WILD-TYPE	46	39	33	32	23	35

'LRFN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.33

Table S4365. Gene #443: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LRFN3 MUTATED	2	12	2	1	1
LRFN3 WILD-TYPE	77	114	25	42	11

'LRFN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.095

Table S4366. Gene #443: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LRFN3 MUTATED	1	10	2	2
LRFN3 WILD-TYPE	70	66	32	61

Figure S1589. Get High-res Image Gene #443: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LRFN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 0.21

Table S4367. Gene #443: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LRFN3 MUTATED	1	7	1	1	5
LRFN3 WILD-TYPE	15	55	50	64	50

'LRFN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00501 (Fisher's exact test), Q value = 0.045

Table S4368. Gene #443: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LRFN3 MUTATED	4	7	4	0
LRFN3 WILD-TYPE	94	37	46	57

Figure S1590. Get High-res Image Gene #443: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LRFN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 0.21

Table S4369. Gene #443: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LRFN3 MUTATED	8	2	4	2	1
LRFN3 WILD-TYPE	54	57	36	35	58

'LRFN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0692 (Fisher's exact test), Q value = 0.19

Table S4370. Gene #443: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LRFN3 MUTATED	5	1	11
LRFN3 WILD-TYPE	101	53	86

'LRFN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.24

Table S4371. Gene #443: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LRFN3 MUTATED	10	2	6
LRFN3 WILD-TYPE	113	93	65

'LRFN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0903 (Fisher's exact test), Q value = 0.22

Table S4372. Gene #443: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LRFN3 MUTATED	14	1	3
LRFN3 WILD-TYPE	143	62	66

'LRFN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.41

Table S4373. Gene #443: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LRFN3 MUTATED	1	2	3	5	0	1
LRFN3 WILD-TYPE	32	17	56	34	16	44

'LRFN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0662 (Fisher's exact test), Q value = 0.19

Table S4374. Gene #443: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LRFN3 MUTATED	7	1	2	0	0	2
LRFN3 WILD-TYPE	40	38	33	32	23	33

'C7ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S4375. Gene #444: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C7ORF49 MUTATED	0	5	0	1	1
C7ORF49 WILD-TYPE	79	121	27	42	11

'C7ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00884 (Fisher's exact test), Q value = 0.062

Table S4376. Gene #444: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C7ORF49 MUTATED	0	6	1	0
C7ORF49 WILD-TYPE	71	70	33	63

Figure S1591. Get High-res Image Gene #444: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C7ORF49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0853 (Fisher's exact test), Q value = 0.21

Table S4377. Gene #444: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C7ORF49 MUTATED	0	1	3	0	0
C7ORF49 WILD-TYPE	16	61	48	65	55

'C7ORF49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S4378. Gene #444: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C7ORF49 MUTATED	0	2	1	1
C7ORF49 WILD-TYPE	98	42	49	56

'C7ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.42

Table S4379. Gene #444: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C7ORF49 MUTATED	4	1	1	1	0
C7ORF49 WILD-TYPE	58	58	39	36	59

'C7ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.082

Table S4380. Gene #444: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C7ORF49 MUTATED	0	1	6
C7ORF49 WILD-TYPE	106	53	91

Figure S1592. Get High-res Image Gene #444: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.52

Table S4381. Gene #444: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C7ORF49 MUTATED	5	1	1
C7ORF49 WILD-TYPE	118	94	70

'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.5

Table S4382. Gene #444: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C7ORF49 MUTATED	6	0	1
C7ORF49 WILD-TYPE	151	63	68

'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.13

Table S4383. Gene #444: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C7ORF49 MUTATED	0	1	0	3	0	0
C7ORF49 WILD-TYPE	33	18	59	36	16	45

Figure S1593. Get High-res Image Gene #444: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.26

Table S4384. Gene #444: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C7ORF49 MUTATED	1	0	0	1	2	0
C7ORF49 WILD-TYPE	46	39	35	31	21	35

'FAM92B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.41

Table S4385. Gene #445: 'FAM92B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM92B MUTATED	1	1	0	0	1
FAM92B WILD-TYPE	78	125	27	43	11

'FAM92B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.78

Table S4386. Gene #445: 'FAM92B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM92B MUTATED	1	1	1	0
FAM92B WILD-TYPE	70	75	33	63

'FAM92B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 0.96

Table S4387. Gene #445: 'FAM92B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FAM92B MUTATED	1	0	1	0	1
FAM92B WILD-TYPE	61	59	39	37	58

'FAM92B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.71

Table S4388. Gene #445: 'FAM92B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FAM92B MUTATED	1	0	2
FAM92B WILD-TYPE	105	54	95

'FAM92B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.6

Table S4389. Gene #445: 'FAM92B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FAM92B MUTATED	2	0	1
FAM92B WILD-TYPE	121	95	70

'FAM92B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4390. Gene #445: 'FAM92B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FAM92B MUTATED	2	0	1
FAM92B WILD-TYPE	155	63	68

'HCRTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.58

Table S4391. Gene #446: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HCRTR2 MUTATED	1	6	1	0	0
HCRTR2 WILD-TYPE	78	120	26	43	12

'HCRTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.36

Table S4392. Gene #446: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HCRTR2 MUTATED	1	2	3	1
HCRTR2 WILD-TYPE	70	74	31	62

'HCRTR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.34

Table S4393. Gene #446: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HCRTR2 MUTATED	1	0	2	1	3
HCRTR2 WILD-TYPE	15	62	49	64	52

'HCRTR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.35

Table S4394. Gene #446: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HCRTR2 MUTATED	2	3	0	2
HCRTR2 WILD-TYPE	96	41	50	55

'HCRTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.51

Table S4395. Gene #446: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HCRTR2 MUTATED	5	1	1	1	1
HCRTR2 WILD-TYPE	57	58	39	36	58

'HCRTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 0.88

Table S4396. Gene #446: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HCRTR2 MUTATED	4	1	4
HCRTR2 WILD-TYPE	102	53	93

'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.6

Table S4397. Gene #446: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HCRTR2 MUTATED	6	2	1
HCRTR2 WILD-TYPE	117	93	70

'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.6

Table S4398. Gene #446: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HCRTR2 MUTATED	7	1	1
HCRTR2 WILD-TYPE	150	62	68

'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.47

Table S4399. Gene #446: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HCRTR2 MUTATED	1	2	2	1	0	0
HCRTR2 WILD-TYPE	32	17	57	38	16	45

'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S4400. Gene #446: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HCRTR2 MUTATED	3	0	1	0	2	0
HCRTR2 WILD-TYPE	44	39	34	32	21	35

'TAS2R10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.72

Table S4401. Gene #447: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TAS2R10 MUTATED	0	2	0	1	0
TAS2R10 WILD-TYPE	79	124	27	42	12

'TAS2R10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S4402. Gene #447: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TAS2R10 MUTATED	0	3	0	0
TAS2R10 WILD-TYPE	71	73	34	63

'TAS2R10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.24

Table S4403. Gene #447: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TAS2R10 MUTATED	1	0	0	2	0
TAS2R10 WILD-TYPE	61	59	40	35	59

'TAS2R10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S4404. Gene #447: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TAS2R10 MUTATED	0	0	3
TAS2R10 WILD-TYPE	106	54	94

'TAS2R10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S4405. Gene #447: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TAS2R10 MUTATED	3	0	0
TAS2R10 WILD-TYPE	120	95	71

'TAS2R10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.56

Table S4406. Gene #447: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TAS2R10 MUTATED	3	0	0
TAS2R10 WILD-TYPE	154	63	69

'PTPDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 0.97

Table S4407. Gene #448: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PTPDC1 MUTATED	2	5	0	1	0
PTPDC1 WILD-TYPE	77	121	27	42	12

'PTPDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4408. Gene #448: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PTPDC1 MUTATED	2	2	1	2
PTPDC1 WILD-TYPE	69	74	33	61

'PTPDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.28

Table S4409. Gene #448: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PTPDC1 MUTATED	0	2	4	0	1
PTPDC1 WILD-TYPE	16	60	47	65	54

'PTPDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S4410. Gene #448: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PTPDC1 MUTATED	3	3	1	0
PTPDC1 WILD-TYPE	95	41	49	57

'PTPDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.68

Table S4411. Gene #448: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PTPDC1 MUTATED	2	1	0	2	3
PTPDC1 WILD-TYPE	60	58	40	35	56

'PTPDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 0.2

Table S4412. Gene #448: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PTPDC1 MUTATED	2	0	6
PTPDC1 WILD-TYPE	104	54	91

'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.56

Table S4413. Gene #448: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PTPDC1 MUTATED	5	1	2
PTPDC1 WILD-TYPE	118	94	69

'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.79

Table S4414. Gene #448: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PTPDC1 MUTATED	6	1	1
PTPDC1 WILD-TYPE	151	62	68

'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.6

Table S4415. Gene #448: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PTPDC1 MUTATED	1	0	4	1	0	0
PTPDC1 WILD-TYPE	32	19	55	38	16	45

'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.37

Table S4416. Gene #448: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PTPDC1 MUTATED	2	0	3	1	0	0
PTPDC1 WILD-TYPE	45	39	32	31	23	35

'THEMIS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.17

Table S4417. Gene #449: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
THEMIS MUTATED	0	8	0	0	0
THEMIS WILD-TYPE	79	118	27	43	12

'THEMIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S4418. Gene #449: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
THEMIS MUTATED	0	4	0	1
THEMIS WILD-TYPE	71	72	34	62

'THEMIS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 0.91

Table S4419. Gene #449: 'THEMIS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
THEMIS MUTATED	0	3	2	1	2
THEMIS WILD-TYPE	16	59	49	64	53

'THEMIS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00269 (Fisher's exact test), Q value = 0.032

Table S4420. Gene #449: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
THEMIS MUTATED	0	5	2	1
THEMIS WILD-TYPE	98	39	48	56

Figure S1594. Get High-res Image Gene #449: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'THEMIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.13

Table S4421. Gene #449: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
THEMIS MUTATED	4	0	0	1	0
THEMIS WILD-TYPE	58	59	40	36	59

Figure S1595. Get High-res Image Gene #449: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'THEMIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.65

Table S4422. Gene #449: 'THEMIS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
THEMIS MUTATED	2	0	3
THEMIS WILD-TYPE	104	54	94

'THEMIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.13

Table S4423. Gene #449: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
THEMIS MUTATED	7	1	0
THEMIS WILD-TYPE	116	94	71

Figure S1596. Get High-res Image Gene #449: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'THEMIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.45

Table S4424. Gene #449: 'THEMIS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
THEMIS MUTATED	6	2	0
THEMIS WILD-TYPE	151	61	69

'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.43

Table S4425. Gene #449: 'THEMIS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
THEMIS MUTATED	2	0	3	0	0	0
THEMIS WILD-TYPE	31	19	56	39	16	45

'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.61

Table S4426. Gene #449: 'THEMIS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
THEMIS MUTATED	2	0	2	1	0	0
THEMIS WILD-TYPE	45	39	33	31	23	35

'BRCA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.74

Table S4427. Gene #450: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BRCA1 MUTATED	3	9	1	1	1
BRCA1 WILD-TYPE	76	117	26	42	11

'BRCA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00607 (Fisher's exact test), Q value = 0.05

Table S4428. Gene #450: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BRCA1 MUTATED	1	8	1	0
BRCA1 WILD-TYPE	70	68	33	63

Figure S1597. Get High-res Image Gene #450: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRCA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 0.13

Table S4429. Gene #450: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BRCA1 MUTATED	0	7	2	0	4
BRCA1 WILD-TYPE	16	55	49	65	51

Figure S1598. Get High-res Image Gene #450: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BRCA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00716 (Fisher's exact test), Q value = 0.055

Table S4430. Gene #450: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BRCA1 MUTATED	3	6	4	0
BRCA1 WILD-TYPE	95	38	46	57

Figure S1599. Get High-res Image Gene #450: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BRCA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.15

Table S4431. Gene #450: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BRCA1 MUTATED	7	0	1	2	2
BRCA1 WILD-TYPE	55	59	39	35	57

Figure S1600. Get High-res Image Gene #450: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRCA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.28

Table S4432. Gene #450: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BRCA1 MUTATED	3	1	8
BRCA1 WILD-TYPE	103	53	89

'BRCA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.57

Table S4433. Gene #450: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BRCA1 MUTATED	9	3	3
BRCA1 WILD-TYPE	114	92	68

'BRCA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.43

Table S4434. Gene #450: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BRCA1 MUTATED	11	1	3
BRCA1 WILD-TYPE	146	62	66

'BRCA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.47

Table S4435. Gene #450: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BRCA1 MUTATED	2	2	3	2	0	0
BRCA1 WILD-TYPE	31	17	56	37	16	45

'BRCA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.49

Table S4436. Gene #450: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BRCA1 MUTATED	4	0	1	1	2	1
BRCA1 WILD-TYPE	43	39	34	31	21	34

'KCNJ10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.11

Table S4437. Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KCNJ10 MUTATED	0	10	1	0	0
KCNJ10 WILD-TYPE	79	116	26	43	12

Figure S1601. Get High-res Image Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNJ10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00282 (Fisher's exact test), Q value = 0.033

Table S4438. Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KCNJ10 MUTATED	0	7	1	0
KCNJ10 WILD-TYPE	71	69	33	63

Figure S1602. Get High-res Image Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNJ10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.31

Table S4439. Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KCNJ10 MUTATED	0	4	2	0	4
KCNJ10 WILD-TYPE	16	58	49	65	51

'KCNJ10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S4440. Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KCNJ10 MUTATED	0	9	1	0
KCNJ10 WILD-TYPE	98	35	49	57

Figure S1603. Get High-res Image Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00137 (Fisher's exact test), Q value = 0.021

Table S4441. Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KCNJ10 MUTATED	5	0	0	4	0
KCNJ10 WILD-TYPE	57	59	40	33	59

Figure S1604. Get High-res Image Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KCNJ10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00671 (Fisher's exact test), Q value = 0.053

Table S4442. Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KCNJ10 MUTATED	1	0	8
KCNJ10 WILD-TYPE	105	54	89

Figure S1605. Get High-res Image Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00326 (Fisher's exact test), Q value = 0.035

Table S4443. Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KCNJ10 MUTATED	10	0	1
KCNJ10 WILD-TYPE	113	95	70

Figure S1606. Get High-res Image Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00607 (Fisher's exact test), Q value = 0.05

Table S4444. Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KCNJ10 MUTATED	11	0	0
KCNJ10 WILD-TYPE	146	63	69

Figure S1607. Get High-res Image Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.61

Table S4445. Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KCNJ10 MUTATED	1	1	4	2	0	0
KCNJ10 WILD-TYPE	32	18	55	37	16	45

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.084

Table S4446. Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KCNJ10 MUTATED	5	0	3	0	0	0
KCNJ10 WILD-TYPE	42	39	32	32	23	35

Figure S1608. Get High-res Image Gene #451: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TNK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.37

Table S4447. Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TNK2 MUTATED	2	9	0	0	0
TNK2 WILD-TYPE	77	117	27	43	12

'TNK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S4448. Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TNK2 MUTATED	1	6	2	1
TNK2 WILD-TYPE	70	70	32	62

'TNK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0421 (Fisher's exact test), Q value = 0.14

Table S4449. Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TNK2 MUTATED	2	1	3	0	3
TNK2 WILD-TYPE	14	61	48	65	52

Figure S1609. Get High-res Image Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TNK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.41

Table S4450. Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TNK2 MUTATED	3	4	1	1
TNK2 WILD-TYPE	95	40	49	56

'TNK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.11

Table S4451. Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TNK2 MUTATED	7	1	1	0	1
TNK2 WILD-TYPE	55	58	39	37	58

Figure S1610. Get High-res Image Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TNK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 0.11

Table S4452. Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TNK2 MUTATED	1	1	8
TNK2 WILD-TYPE	105	53	89

Figure S1611. Get High-res Image Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TNK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.12

Table S4453. Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TNK2 MUTATED	7	0	4
TNK2 WILD-TYPE	116	95	67

Figure S1612. Get High-res Image Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TNK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0454 (Fisher's exact test), Q value = 0.15

Table S4454. Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TNK2 MUTATED	10	0	1
TNK2 WILD-TYPE	147	63	68

Figure S1613. Get High-res Image Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TNK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.072

Table S4455. Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TNK2 MUTATED	2	2	0	4	0	0
TNK2 WILD-TYPE	31	17	59	35	16	45

Figure S1614. Get High-res Image Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TNK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.11

Table S4456. Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TNK2 MUTATED	3	0	0	2	3	0
TNK2 WILD-TYPE	44	39	35	30	20	35

Figure S1615. Get High-res Image Gene #452: 'TNK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TMEM92 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4457. Gene #453: 'TMEM92 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TMEM92 MUTATED	1	2	0	0	0
TMEM92 WILD-TYPE	78	124	27	43	12

'TMEM92 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.6

Table S4458. Gene #453: 'TMEM92 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TMEM92 MUTATED	2	0	1
TMEM92 WILD-TYPE	121	95	70

'TMEM92 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4459. Gene #453: 'TMEM92 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TMEM92 MUTATED	2	0	1
TMEM92 WILD-TYPE	155	63	68

'KCNH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00668 (Fisher's exact test), Q value = 0.053

Table S4460. Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KCNH3 MUTATED	0	14	1	1	0
KCNH3 WILD-TYPE	79	112	26	42	12

Figure S1616. Get High-res Image Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0046

Table S4461. Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KCNH3 MUTATED	1	13	0	1
KCNH3 WILD-TYPE	70	63	34	62

Figure S1617. Get High-res Image Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.42

Table S4462. Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KCNH3 MUTATED	0	6	3	1	4
KCNH3 WILD-TYPE	16	56	48	64	51

'KCNH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00078 (Fisher's exact test), Q value = 0.016

Table S4463. Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KCNH3 MUTATED	1	7	5	1
KCNH3 WILD-TYPE	97	37	45	56

Figure S1618. Get High-res Image Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.078

Table S4464. Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KCNH3 MUTATED	7	1	1	3	0
KCNH3 WILD-TYPE	55	58	39	34	59

Figure S1619. Get High-res Image Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KCNH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00455 (Fisher's exact test), Q value = 0.042

Table S4465. Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KCNH3 MUTATED	1	1	10
KCNH3 WILD-TYPE	105	53	87

Figure S1620. Get High-res Image Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S4466. Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KCNH3 MUTATED	11	3	2
KCNH3 WILD-TYPE	112	92	69

'KCNH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.31

Table S4467. Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KCNH3 MUTATED	12	3	1
KCNH3 WILD-TYPE	145	60	68

'KCNH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.17

Table S4468. Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KCNH3 MUTATED	1	1	7	5	0	0
KCNH3 WILD-TYPE	32	18	52	34	16	45

'KCNH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.053 (Fisher's exact test), Q value = 0.16

Table S4469. Gene #454: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KCNH3 MUTATED	6	0	5	1	1	1
KCNH3 WILD-TYPE	41	39	30	31	22	34

'LMTK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.61

Table S4470. Gene #455: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LMTK3 MUTATED	1	6	0	0	0
LMTK3 WILD-TYPE	78	120	27	43	12

'LMTK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.61

Table S4471. Gene #455: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LMTK3 MUTATED	1	4	0	2
LMTK3 WILD-TYPE	70	72	34	61

'LMTK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.76

Table S4472. Gene #455: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LMTK3 MUTATED	1	2	2	1	1
LMTK3 WILD-TYPE	15	60	49	64	54

'LMTK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.42

Table S4473. Gene #455: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LMTK3 MUTATED	3	1	3	0
LMTK3 WILD-TYPE	95	43	47	57

'LMTK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.16

Table S4474. Gene #455: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LMTK3 MUTATED	5	0	0	2	1
LMTK3 WILD-TYPE	57	59	40	35	58

Figure S1621. Get High-res Image Gene #455: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LMTK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.56

Table S4475. Gene #455: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LMTK3 MUTATED	2	1	5
LMTK3 WILD-TYPE	104	53	92

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.56

Table S4476. Gene #455: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LMTK3 MUTATED	5	1	2
LMTK3 WILD-TYPE	118	94	69

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.37

Table S4477. Gene #455: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LMTK3 MUTATED	7	0	1
LMTK3 WILD-TYPE	150	63	68

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.45

Table S4478. Gene #455: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LMTK3 MUTATED	3	0	2	2	0	0
LMTK3 WILD-TYPE	30	19	57	37	16	45

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.57

Table S4479. Gene #455: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LMTK3 MUTATED	3	0	2	0	1	1
LMTK3 WILD-TYPE	44	39	33	32	22	34

'MRPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S4480. Gene #456: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MRPL2 MUTATED	0	4	0	0	1
MRPL2 WILD-TYPE	79	122	27	43	11

'MRPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.43

Table S4481. Gene #456: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MRPL2 MUTATED	0	3	0	1
MRPL2 WILD-TYPE	71	73	34	62

'MRPL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 0.22

Table S4482. Gene #456: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MRPL2 MUTATED	1	3	1	0	0
MRPL2 WILD-TYPE	15	59	50	65	55

'MRPL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0595 (Fisher's exact test), Q value = 0.17

Table S4483. Gene #456: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MRPL2 MUTATED	2	3	0	0
MRPL2 WILD-TYPE	96	41	50	57

'MRPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.068

Table S4484. Gene #456: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MRPL2 MUTATED	5	0	0	1	0
MRPL2 WILD-TYPE	57	59	40	36	59

Figure S1622. Get High-res Image Gene #456: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MRPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S4485. Gene #456: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MRPL2 MUTATED	1	0	5
MRPL2 WILD-TYPE	105	54	92

'MRPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.23

Table S4486. Gene #456: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MRPL2 MUTATED	5	0	1
MRPL2 WILD-TYPE	118	95	70

'MRPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.26

Table S4487. Gene #456: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MRPL2 MUTATED	6	0	0
MRPL2 WILD-TYPE	151	63	69

'MRPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.75

Table S4488. Gene #456: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MRPL2 MUTATED	1	0	1	2	0	0
MRPL2 WILD-TYPE	32	19	58	37	16	45

'MRPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.6

Table S4489. Gene #456: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MRPL2 MUTATED	2	0	1	0	1	0
MRPL2 WILD-TYPE	45	39	34	32	22	35

'SEZ6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 0.18

Table S4490. Gene #457: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SEZ6 MUTATED	0	9	0	1	0
SEZ6 WILD-TYPE	79	117	27	42	12

'SEZ6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00232 (Fisher's exact test), Q value = 0.03

Table S4491. Gene #457: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SEZ6 MUTATED	0	7	2	0
SEZ6 WILD-TYPE	71	69	32	63

Figure S1623. Get High-res Image Gene #457: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SEZ6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.25

Table S4492. Gene #457: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SEZ6 MUTATED	0	5	2	0	1
SEZ6 WILD-TYPE	16	57	49	65	54

'SEZ6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.076

Table S4493. Gene #457: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SEZ6 MUTATED	1	4	3	0
SEZ6 WILD-TYPE	97	40	47	57

Figure S1624. Get High-res Image Gene #457: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SEZ6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.2

Table S4494. Gene #457: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SEZ6 MUTATED	5	2	0	1	0
SEZ6 WILD-TYPE	57	57	40	36	59

'SEZ6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0894 (Fisher's exact test), Q value = 0.22

Table S4495. Gene #457: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SEZ6 MUTATED	1	1	6
SEZ6 WILD-TYPE	105	53	91

'SEZ6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0457 (Fisher's exact test), Q value = 0.15

Table S4496. Gene #457: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SEZ6 MUTATED	8	2	0
SEZ6 WILD-TYPE	115	93	71

Figure S1625. Get High-res Image Gene #457: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SEZ6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S4497. Gene #457: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SEZ6 MUTATED	8	2	0
SEZ6 WILD-TYPE	149	61	69

'SEZ6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 0.82

Table S4498. Gene #457: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SEZ6 MUTATED	1	2	2	1	0	2
SEZ6 WILD-TYPE	32	17	57	38	16	43

'SEZ6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0311 (Fisher's exact test), Q value = 0.12

Table S4499. Gene #457: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SEZ6 MUTATED	5	1	0	0	2	0
SEZ6 WILD-TYPE	42	38	35	32	21	35

Figure S1626. Get High-res Image Gene #457: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'XK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.78

Table S4500. Gene #458: 'XK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
XK MUTATED	1	3	1	0	0
XK WILD-TYPE	78	123	26	43	12

'XK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4501. Gene #458: 'XK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
XK MUTATED	1	1	0	1
XK WILD-TYPE	70	75	34	62

'XK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.4

Table S4502. Gene #458: 'XK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
XK MUTATED	0	3	0	0	1
XK WILD-TYPE	16	59	51	65	54

'XK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0094 (Fisher's exact test), Q value = 0.064

Table S4503. Gene #458: 'XK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
XK MUTATED	0	3	1	0
XK WILD-TYPE	98	41	49	57

Figure S1627. Get High-res Image Gene #458: 'XK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'XK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.92

Table S4504. Gene #458: 'XK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
XK MUTATED	2	1	0	1	1
XK WILD-TYPE	60	58	40	36	58

'XK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.72

Table S4505. Gene #458: 'XK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
XK MUTATED	1	1	3
XK WILD-TYPE	105	53	94

'XK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 0.9

Table S4506. Gene #458: 'XK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
XK MUTATED	3	1	1
XK WILD-TYPE	120	94	70

'XK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.71

Table S4507. Gene #458: 'XK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
XK MUTATED	2	2	1
XK WILD-TYPE	155	61	68

'XK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 0.97

Table S4508. Gene #458: 'XK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
XK MUTATED	1	0	1	0	0	1
XK WILD-TYPE	32	19	58	39	16	44

'XK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4509. Gene #458: 'XK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
XK MUTATED	1	1	1	0	0	0
XK WILD-TYPE	46	38	34	32	23	35

'CNOT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.33

Table S4510. Gene #459: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CNOT6 MUTATED	0	6	1	0	0
CNOT6 WILD-TYPE	79	120	26	43	12

'CNOT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S4511. Gene #459: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CNOT6 MUTATED	0	1	2	2
CNOT6 WILD-TYPE	71	75	32	61

'CNOT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.38

Table S4512. Gene #459: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CNOT6 MUTATED	1	3	2	0	1
CNOT6 WILD-TYPE	15	59	49	65	54

'CNOT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0493 (Fisher's exact test), Q value = 0.16

Table S4513. Gene #459: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CNOT6 MUTATED	2	4	1	0
CNOT6 WILD-TYPE	96	40	49	57

Figure S1628. Get High-res Image Gene #459: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CNOT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S4514. Gene #459: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CNOT6 MUTATED	3	0	1	0	0
CNOT6 WILD-TYPE	59	59	39	37	59

'CNOT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.77

Table S4515. Gene #459: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CNOT6 MUTATED	2	0	2
CNOT6 WILD-TYPE	104	54	95

'CNOT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S4516. Gene #459: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CNOT6 MUTATED	5	2	0
CNOT6 WILD-TYPE	118	93	71

'CNOT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.54

Table S4517. Gene #459: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CNOT6 MUTATED	5	2	0
CNOT6 WILD-TYPE	152	61	69

'CNOT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.78

Table S4518. Gene #459: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CNOT6 MUTATED	0	0	3	0	0	1
CNOT6 WILD-TYPE	33	19	56	39	16	44

'CNOT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 0.16

Table S4519. Gene #459: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CNOT6 MUTATED	0	1	3	0	0	0
CNOT6 WILD-TYPE	47	38	32	32	23	35

'KCNH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S4520. Gene #460: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KCNH2 MUTATED	1	8	1	1	2
KCNH2 WILD-TYPE	78	118	26	42	10

'KCNH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.62

Table S4521. Gene #460: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KCNH2 MUTATED	2	5	1	1
KCNH2 WILD-TYPE	69	71	33	62

'KCNH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0422 (Fisher's exact test), Q value = 0.14

Table S4522. Gene #460: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KCNH2 MUTATED	1	6	1	0	2
KCNH2 WILD-TYPE	15	56	50	65	53

Figure S1629. Get High-res Image Gene #460: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KCNH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0323 (Fisher's exact test), Q value = 0.13

Table S4523. Gene #460: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KCNH2 MUTATED	3	5	2	0
KCNH2 WILD-TYPE	95	39	48	57

Figure S1630. Get High-res Image Gene #460: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.067

Table S4524. Gene #460: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KCNH2 MUTATED	8	0	2	2	1
KCNH2 WILD-TYPE	54	59	38	35	58

Figure S1631. Get High-res Image Gene #460: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KCNH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0702 (Fisher's exact test), Q value = 0.19

Table S4525. Gene #460: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KCNH2 MUTATED	3	1	9
KCNH2 WILD-TYPE	103	53	88

'KCNH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0823 (Fisher's exact test), Q value = 0.21

Table S4526. Gene #460: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KCNH2 MUTATED	9	1	3
KCNH2 WILD-TYPE	114	94	68

'KCNH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S4527. Gene #460: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KCNH2 MUTATED	11	1	1
KCNH2 WILD-TYPE	146	62	68

'KCNH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.27

Table S4528. Gene #460: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KCNH2 MUTATED	1	2	2	4	0	0
KCNH2 WILD-TYPE	32	17	57	35	16	45

'KCNH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.29

Table S4529. Gene #460: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KCNH2 MUTATED	5	0	2	0	1	1
KCNH2 WILD-TYPE	42	39	33	32	22	34

'NLRC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.009

Table S4530. Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NLRC5 MUTATED	0	17	1	0	1
NLRC5 WILD-TYPE	79	109	26	43	11

Figure S1632. Get High-res Image Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NLRC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00235 (Fisher's exact test), Q value = 0.03

Table S4531. Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NLRC5 MUTATED	0	10	1	2
NLRC5 WILD-TYPE	71	66	33	61

Figure S1633. Get High-res Image Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NLRC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00575 (Fisher's exact test), Q value = 0.049

Table S4532. Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NLRC5 MUTATED	1	10	4	0	3
NLRC5 WILD-TYPE	15	52	47	65	52

Figure S1634. Get High-res Image Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NLRC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00207 (Fisher's exact test), Q value = 0.028

Table S4533. Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NLRC5 MUTATED	3	8	6	1
NLRC5 WILD-TYPE	95	36	44	56

Figure S1635. Get High-res Image Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NLRC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0069

Table S4534. Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NLRC5 MUTATED	10	1	1	5	0
NLRC5 WILD-TYPE	52	58	39	32	59

Figure S1636. Get High-res Image Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NLRC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.086

Table S4535. Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NLRC5 MUTATED	4	1	12
NLRC5 WILD-TYPE	102	53	85

Figure S1637. Get High-res Image Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.11

Table S4536. Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NLRC5 MUTATED	14	3	2
NLRC5 WILD-TYPE	109	92	69

Figure S1638. Get High-res Image Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00206 (Fisher's exact test), Q value = 0.028

Table S4537. Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NLRC5 MUTATED	17	2	0
NLRC5 WILD-TYPE	140	61	69

Figure S1639. Get High-res Image Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.076

Table S4538. Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NLRC5 MUTATED	0	3	5	5	0	0
NLRC5 WILD-TYPE	33	16	54	34	16	45

Figure S1640. Get High-res Image Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0647 (Fisher's exact test), Q value = 0.18

Table S4539. Gene #461: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NLRC5 MUTATED	4	0	3	3	3	0
NLRC5 WILD-TYPE	43	39	32	29	20	35

'EPHA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.28

Table S4540. Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EPHA5 MUTATED	6	13	3	1	3
EPHA5 WILD-TYPE	73	113	24	42	9

'EPHA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00836 (Fisher's exact test), Q value = 0.061

Table S4541. Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EPHA5 MUTATED	5	14	1	2
EPHA5 WILD-TYPE	66	62	33	61

Figure S1641. Get High-res Image Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPHA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00397 (Fisher's exact test), Q value = 0.04

Table S4542. Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EPHA5 MUTATED	4	7	4	0	5
EPHA5 WILD-TYPE	12	55	47	65	50

Figure S1642. Get High-res Image Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EPHA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0823 (Fisher's exact test), Q value = 0.21

Table S4543. Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EPHA5 MUTATED	7	6	6	1
EPHA5 WILD-TYPE	91	38	44	56

'EPHA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.084

Table S4544. Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EPHA5 MUTATED	11	1	2	4	3
EPHA5 WILD-TYPE	51	58	38	33	56

Figure S1643. Get High-res Image Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPHA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00596 (Fisher's exact test), Q value = 0.05

Table S4545. Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EPHA5 MUTATED	4	2	15
EPHA5 WILD-TYPE	102	52	82

Figure S1644. Get High-res Image Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPHA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.095

Table S4546. Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EPHA5 MUTATED	17	3	7
EPHA5 WILD-TYPE	106	92	64

Figure S1645. Get High-res Image Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPHA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0315 (Fisher's exact test), Q value = 0.12

Table S4547. Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EPHA5 MUTATED	18	1	8
EPHA5 WILD-TYPE	139	62	61

Figure S1646. Get High-res Image Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.1

Table S4548. Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EPHA5 MUTATED	3	4	8	4	0	0
EPHA5 WILD-TYPE	30	15	51	35	16	45

Figure S1647. Get High-res Image Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EPHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00919 (Fisher's exact test), Q value = 0.063

Table S4549. Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EPHA5 MUTATED	7	0	4	5	3	0
EPHA5 WILD-TYPE	40	39	31	27	20	35

Figure S1648. Get High-res Image Gene #462: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LRRC43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.13

Table S4550. Gene #463: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LRRC43 MUTATED	0	9	0	0	0
LRRC43 WILD-TYPE	79	117	27	43	12

Figure S1649. Get High-res Image Gene #463: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRRC43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 0.13

Table S4551. Gene #463: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LRRC43 MUTATED	0	6	1	1
LRRC43 WILD-TYPE	71	70	33	62

Figure S1650. Get High-res Image Gene #463: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LRRC43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.6

Table S4552. Gene #463: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LRRC43 MUTATED	0	3	2	0	2
LRRC43 WILD-TYPE	16	59	49	65	53

'LRRC43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0512 (Fisher's exact test), Q value = 0.16

Table S4553. Gene #463: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LRRC43 MUTATED	2	4	1	0
LRRC43 WILD-TYPE	96	40	49	57

'LRRC43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00738 (Fisher's exact test), Q value = 0.056

Table S4554. Gene #463: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LRRC43 MUTATED	6	0	3	1	0
LRRC43 WILD-TYPE	56	59	37	36	59

Figure S1651. Get High-res Image Gene #463: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LRRC43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S4555. Gene #463: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LRRC43 MUTATED	4	0	6
LRRC43 WILD-TYPE	102	54	91

'LRRC43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.067

Table S4556. Gene #463: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LRRC43 MUTATED	9	1	0
LRRC43 WILD-TYPE	114	94	71

Figure S1652. Get High-res Image Gene #463: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LRRC43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0754 (Fisher's exact test), Q value = 0.2

Table S4557. Gene #463: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LRRC43 MUTATED	9	0	1
LRRC43 WILD-TYPE	148	63	68

'LRRC43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.37

Table S4558. Gene #463: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LRRC43 MUTATED	1	0	3	4	0	0
LRRC43 WILD-TYPE	32	19	56	35	16	45

'LRRC43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.63

Table S4559. Gene #463: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LRRC43 MUTATED	3	0	2	2	0	1
LRRC43 WILD-TYPE	44	39	33	30	23	34

'PTPN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.26

Table S4560. Gene #464: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PTPN4 MUTATED	0	6	0	1	1
PTPN4 WILD-TYPE	79	120	27	42	11

'PTPN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.17

Table S4561. Gene #464: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PTPN4 MUTATED	0	4	1	0
PTPN4 WILD-TYPE	71	72	33	63

'PTPN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.56

Table S4562. Gene #464: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PTPN4 MUTATED	0	3	0	1	3
PTPN4 WILD-TYPE	16	59	51	64	52

'PTPN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0702 (Fisher's exact test), Q value = 0.19

Table S4563. Gene #464: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PTPN4 MUTATED	1	4	1	1
PTPN4 WILD-TYPE	97	40	49	56

'PTPN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S4564. Gene #464: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PTPN4 MUTATED	4	1	0	2	0
PTPN4 WILD-TYPE	58	58	40	35	59

'PTPN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.3

Table S4565. Gene #464: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PTPN4 MUTATED	1	1	5
PTPN4 WILD-TYPE	105	53	92

'PTPN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.099

Table S4566. Gene #464: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PTPN4 MUTATED	8	1	0
PTPN4 WILD-TYPE	115	94	71

Figure S1653. Get High-res Image Gene #464: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTPN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.098

Table S4567. Gene #464: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PTPN4 MUTATED	9	0	0
PTPN4 WILD-TYPE	148	63	69

Figure S1654. Get High-res Image Gene #464: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTPN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.15

Table S4568. Gene #464: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PTPN4 MUTATED	3	0	0	2	0	0
PTPN4 WILD-TYPE	30	19	59	37	16	45

Figure S1655. Get High-res Image Gene #464: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PTPN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.29

Table S4569. Gene #464: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PTPN4 MUTATED	2	0	0	1	2	0
PTPN4 WILD-TYPE	45	39	35	31	21	35

'STK38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.55

Table S4570. Gene #465: 'STK38 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STK38 MUTATED	0	5	0	1	0
STK38 WILD-TYPE	79	121	27	42	12

'STK38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.24

Table S4571. Gene #465: 'STK38 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
STK38 MUTATED	0	4	0	1
STK38 WILD-TYPE	71	72	34	62

'STK38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 0.22

Table S4572. Gene #465: 'STK38 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
STK38 MUTATED	1	3	2	0	0
STK38 WILD-TYPE	15	59	49	65	55

'STK38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00119 (Fisher's exact test), Q value = 0.02

Table S4573. Gene #465: 'STK38 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
STK38 MUTATED	1	5	0	0
STK38 WILD-TYPE	97	39	50	57

Figure S1656. Get High-res Image Gene #465: 'STK38 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STK38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.11

Table S4574. Gene #465: 'STK38 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
STK38 MUTATED	4	0	0	2	0
STK38 WILD-TYPE	58	59	40	35	59

Figure S1657. Get High-res Image Gene #465: 'STK38 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STK38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S4575. Gene #465: 'STK38 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
STK38 MUTATED	1	0	5
STK38 WILD-TYPE	105	54	92

'STK38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.083

Table S4576. Gene #465: 'STK38 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
STK38 MUTATED	6	0	0
STK38 WILD-TYPE	117	95	71

Figure S1658. Get High-res Image Gene #465: 'STK38 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'STK38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S4577. Gene #465: 'STK38 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
STK38 MUTATED	6	0	0
STK38 WILD-TYPE	151	63	69

'STK38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.79

Table S4578. Gene #465: 'STK38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
STK38 MUTATED	1	1	2	1	0	0
STK38 WILD-TYPE	32	18	57	38	16	45

'STK38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.61

Table S4579. Gene #465: 'STK38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
STK38 MUTATED	2	0	2	1	0	0
STK38 WILD-TYPE	45	39	33	31	23	35

'OR51A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 0.84

Table S4580. Gene #466: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OR51A7 MUTATED	2	3	1	0	0
OR51A7 WILD-TYPE	77	123	26	43	12

'OR51A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.65

Table S4581. Gene #466: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OR51A7 MUTATED	1	1	1	3
OR51A7 WILD-TYPE	70	75	33	60

'OR51A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.26

Table S4582. Gene #466: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OR51A7 MUTATED	1	0	2	3	0
OR51A7 WILD-TYPE	15	62	49	62	55

'OR51A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 0.77

Table S4583. Gene #466: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OR51A7 MUTATED	4	0	1	1
OR51A7 WILD-TYPE	94	44	49	56

'OR51A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.7

Table S4584. Gene #466: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OR51A7 MUTATED	1	1	0	2	2
OR51A7 WILD-TYPE	61	58	40	35	57

'OR51A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.63

Table S4585. Gene #466: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OR51A7 MUTATED	4	1	1
OR51A7 WILD-TYPE	102	53	96

'OR51A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4586. Gene #466: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OR51A7 MUTATED	3	2	1
OR51A7 WILD-TYPE	120	93	70

'OR51A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 0.91

Table S4587. Gene #466: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OR51A7 MUTATED	3	1	2
OR51A7 WILD-TYPE	154	62	67

'OR51A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S4588. Gene #466: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OR51A7 MUTATED	1	1	2	1	0	1
OR51A7 WILD-TYPE	32	18	57	38	16	44

'OR51A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.54

Table S4589. Gene #466: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OR51A7 MUTATED	0	2	2	0	1	1
OR51A7 WILD-TYPE	47	37	33	32	22	34

'TUBE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.4

Table S4590. Gene #467: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TUBE1 MUTATED	0	6	0	1	0
TUBE1 WILD-TYPE	79	120	27	42	12

'TUBE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.29

Table S4591. Gene #467: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TUBE1 MUTATED	1	4	0	0
TUBE1 WILD-TYPE	70	72	34	63

'TUBE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0716 (Fisher's exact test), Q value = 0.19

Table S4592. Gene #467: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TUBE1 MUTATED	0	4	0	0	3
TUBE1 WILD-TYPE	16	58	51	65	52

'TUBE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.067

Table S4593. Gene #467: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TUBE1 MUTATED	0	4	2	1
TUBE1 WILD-TYPE	98	40	48	56

Figure S1659. Get High-res Image Gene #467: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TUBE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0995 (Fisher's exact test), Q value = 0.23

Table S4594. Gene #467: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TUBE1 MUTATED	4	0	0	0	1
TUBE1 WILD-TYPE	58	59	40	37	58

'TUBE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 0.65

Table S4595. Gene #467: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TUBE1 MUTATED	2	0	3
TUBE1 WILD-TYPE	104	54	94

'TUBE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.52

Table S4596. Gene #467: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TUBE1 MUTATED	5	1	1
TUBE1 WILD-TYPE	118	94	70

'TUBE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.5

Table S4597. Gene #467: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TUBE1 MUTATED	6	0	1
TUBE1 WILD-TYPE	151	63	68

'TUBE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0887 (Fisher's exact test), Q value = 0.22

Table S4598. Gene #467: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TUBE1 MUTATED	2	0	0	2	1	0
TUBE1 WILD-TYPE	31	19	59	37	15	45

'TUBE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.74

Table S4599. Gene #467: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TUBE1 MUTATED	2	0	0	1	1	1
TUBE1 WILD-TYPE	45	39	35	31	22	34

'RINT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.27

Table S4600. Gene #468: 'RINT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RINT1 MUTATED	0	3	2	0	0
RINT1 WILD-TYPE	79	123	25	43	12

'RINT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.18

Table S4601. Gene #468: 'RINT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RINT1 MUTATED	0	4	1	0
RINT1 WILD-TYPE	71	72	33	63

'RINT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 0.19

Table S4602. Gene #468: 'RINT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RINT1 MUTATED	1	0	1	0	2
RINT1 WILD-TYPE	15	62	50	65	53

'RINT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.16

Table S4603. Gene #468: 'RINT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RINT1 MUTATED	1	3	0	0
RINT1 WILD-TYPE	97	41	50	57

'RINT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S4604. Gene #468: 'RINT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RINT1 MUTATED	2	0	1	2	0
RINT1 WILD-TYPE	60	59	39	35	59

'RINT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.081

Table S4605. Gene #468: 'RINT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RINT1 MUTATED	0	0	5
RINT1 WILD-TYPE	106	54	92

Figure S1660. Get High-res Image Gene #468: 'RINT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RINT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.12

Table S4606. Gene #468: 'RINT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RINT1 MUTATED	5	0	0
RINT1 WILD-TYPE	118	95	71

Figure S1661. Get High-res Image Gene #468: 'RINT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RINT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.4

Table S4607. Gene #468: 'RINT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RINT1 MUTATED	5	0	0
RINT1 WILD-TYPE	152	63	69

'RINT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.79

Table S4608. Gene #468: 'RINT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RINT1 MUTATED	1	1	2	1	0	0
RINT1 WILD-TYPE	32	18	57	38	16	45

'RINT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.74

Table S4609. Gene #468: 'RINT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RINT1 MUTATED	2	0	1	1	1	0
RINT1 WILD-TYPE	45	39	34	31	22	35

'UPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.66

Table S4610. Gene #469: 'UPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
UPK2 MUTATED	0	3	0	0	0
UPK2 WILD-TYPE	79	123	27	43	12

'UPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.56

Table S4611. Gene #469: 'UPK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
UPK2 MUTATED	0	2	1	0	0
UPK2 WILD-TYPE	16	60	50	65	55

'UPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.7

Table S4612. Gene #469: 'UPK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
UPK2 MUTATED	1	1	1	0
UPK2 WILD-TYPE	97	43	49	57

'UPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S4613. Gene #469: 'UPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
UPK2 MUTATED	3	0	0
UPK2 WILD-TYPE	120	95	71

'UPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.56

Table S4614. Gene #469: 'UPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
UPK2 MUTATED	3	0	0
UPK2 WILD-TYPE	154	63	69

'TIGD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S4615. Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TIGD7 MUTATED	0	7	1	0	0
TIGD7 WILD-TYPE	79	119	26	43	12

'TIGD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00279 (Fisher's exact test), Q value = 0.033

Table S4616. Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TIGD7 MUTATED	0	7	1	0
TIGD7 WILD-TYPE	71	69	33	63

Figure S1662. Get High-res Image Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TIGD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.52

Table S4617. Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TIGD7 MUTATED	0	2	1	0	3
TIGD7 WILD-TYPE	16	60	50	65	52

'TIGD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00212 (Fisher's exact test), Q value = 0.029

Table S4618. Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TIGD7 MUTATED	0	4	2	0
TIGD7 WILD-TYPE	98	40	48	57

Figure S1663. Get High-res Image Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TIGD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00472 (Fisher's exact test), Q value = 0.043

Table S4619. Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TIGD7 MUTATED	5	0	0	3	0
TIGD7 WILD-TYPE	57	59	40	34	59

Figure S1664. Get High-res Image Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TIGD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00625 (Fisher's exact test), Q value = 0.051

Table S4620. Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TIGD7 MUTATED	0	1	7
TIGD7 WILD-TYPE	106	53	90

Figure S1665. Get High-res Image Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.13

Table S4621. Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TIGD7 MUTATED	7	1	0
TIGD7 WILD-TYPE	116	94	71

Figure S1666. Get High-res Image Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0431 (Fisher's exact test), Q value = 0.15

Table S4622. Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TIGD7 MUTATED	8	0	0
TIGD7 WILD-TYPE	149	63	69

Figure S1667. Get High-res Image Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.58

Table S4623. Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TIGD7 MUTATED	1	1	3	3	0	0
TIGD7 WILD-TYPE	32	18	56	36	16	45

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.42

Table S4624. Gene #470: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TIGD7 MUTATED	2	0	3	2	1	0
TIGD7 WILD-TYPE	45	39	32	30	22	35

'TERF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.089

Table S4625. Gene #471: 'TERF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TERF2 MUTATED	0	9	2	0	1
TERF2 WILD-TYPE	79	117	25	43	11

Figure S1668. Get High-res Image Gene #471: 'TERF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TERF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.29

Table S4626. Gene #471: 'TERF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TERF2 MUTATED	0	4	1	4
TERF2 WILD-TYPE	71	72	33	59

'TERF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 0.86

Table S4627. Gene #471: 'TERF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TERF2 MUTATED	1	3	2	2	4
TERF2 WILD-TYPE	15	59	49	63	51

'TERF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00699 (Fisher's exact test), Q value = 0.054

Table S4628. Gene #471: 'TERF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TERF2 MUTATED	2	7	1	2
TERF2 WILD-TYPE	96	37	49	55

Figure S1669. Get High-res Image Gene #471: 'TERF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TERF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.15

Table S4629. Gene #471: 'TERF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TERF2 MUTATED	6	1	1	1	0
TERF2 WILD-TYPE	56	58	39	36	59

Figure S1670. Get High-res Image Gene #471: 'TERF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TERF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.67

Table S4630. Gene #471: 'TERF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TERF2 MUTATED	3	1	5
TERF2 WILD-TYPE	103	53	92

'TERF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.39

Table S4631. Gene #471: 'TERF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TERF2 MUTATED	8	2	2
TERF2 WILD-TYPE	115	93	69

'TERF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.52

Table S4632. Gene #471: 'TERF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TERF2 MUTATED	9	2	1
TERF2 WILD-TYPE	148	61	68

'TERF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.76

Table S4633. Gene #471: 'TERF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TERF2 MUTATED	0	1	3	1	1	1
TERF2 WILD-TYPE	33	18	56	38	15	44

'TERF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.66

Table S4634. Gene #471: 'TERF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TERF2 MUTATED	2	1	3	0	0	1
TERF2 WILD-TYPE	45	38	32	32	23	34

'ARHGEF17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00315 (Fisher's exact test), Q value = 0.034

Table S4635. Gene #472: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARHGEF17 MUTATED	1	15	0	0	0
ARHGEF17 WILD-TYPE	78	111	27	43	12

Figure S1671. Get High-res Image Gene #472: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGEF17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 0.21

Table S4636. Gene #472: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARHGEF17 MUTATED	1	8	3	3
ARHGEF17 WILD-TYPE	70	68	31	60

'ARHGEF17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.69

Table S4637. Gene #472: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ARHGEF17 MUTATED	1	4	2	1	3
ARHGEF17 WILD-TYPE	15	58	49	64	52

'ARHGEF17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.45

Table S4638. Gene #472: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ARHGEF17 MUTATED	5	4	1	1
ARHGEF17 WILD-TYPE	93	40	49	56

'ARHGEF17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00278 (Fisher's exact test), Q value = 0.033

Table S4639. Gene #472: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ARHGEF17 MUTATED	10	2	1	0	1
ARHGEF17 WILD-TYPE	52	57	39	37	58

Figure S1672. Get High-res Image Gene #472: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARHGEF17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S4640. Gene #472: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ARHGEF17 MUTATED	3	2	9
ARHGEF17 WILD-TYPE	103	52	88

'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.34

Table S4641. Gene #472: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ARHGEF17 MUTATED	11	3	3
ARHGEF17 WILD-TYPE	112	92	68

'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.37

Table S4642. Gene #472: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ARHGEF17 MUTATED	13	2	2
ARHGEF17 WILD-TYPE	144	61	67

'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.35

Table S4643. Gene #472: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ARHGEF17 MUTATED	3	0	2	6	1	2
ARHGEF17 WILD-TYPE	30	19	57	33	15	43

'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.35

Table S4644. Gene #472: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ARHGEF17 MUTATED	5	2	1	3	3	0
ARHGEF17 WILD-TYPE	42	37	34	29	20	35

'FLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.31

Table S4645. Gene #473: 'FLG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FLG MUTATED	17	33	5	6	0
FLG WILD-TYPE	62	93	22	37	12

'FLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 0.19

Table S4646. Gene #473: 'FLG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FLG MUTATED	15	23	4	9
FLG WILD-TYPE	56	53	30	54

'FLG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.21

Table S4647. Gene #473: 'FLG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FLG MUTATED	6	16	8	8	14
FLG WILD-TYPE	10	46	43	57	41

'FLG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.079

Table S4648. Gene #473: 'FLG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FLG MUTATED	16	16	13	7
FLG WILD-TYPE	82	28	37	50

Figure S1673. Get High-res Image Gene #473: 'FLG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.34

Table S4649. Gene #473: 'FLG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FLG MUTATED	18	8	8	11	11
FLG WILD-TYPE	44	51	32	26	48

'FLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.012

Table S4650. Gene #473: 'FLG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FLG MUTATED	15	7	34
FLG WILD-TYPE	91	47	63

Figure S1674. Get High-res Image Gene #473: 'FLG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.01

Table S4651. Gene #473: 'FLG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FLG MUTATED	38	9	15
FLG WILD-TYPE	85	86	56

Figure S1675. Get High-res Image Gene #473: 'FLG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0556 (Fisher's exact test), Q value = 0.17

Table S4652. Gene #473: 'FLG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FLG MUTATED	40	7	15
FLG WILD-TYPE	117	56	54

'FLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.36

Table S4653. Gene #473: 'FLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FLG MUTATED	8	5	16	7	2	4
FLG WILD-TYPE	25	14	43	32	14	41

'FLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00186 (Fisher's exact test), Q value = 0.027

Table S4654. Gene #473: 'FLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FLG MUTATED	19	3	9	5	2	4
FLG WILD-TYPE	28	36	26	27	21	31

Figure S1676. Get High-res Image Gene #473: 'FLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SAFB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.39

Table S4655. Gene #474: 'SAFB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SAFB MUTATED	0	6	1	2	0
SAFB WILD-TYPE	79	120	26	41	12

'SAFB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.63

Table S4656. Gene #474: 'SAFB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SAFB MUTATED	1	4	1	1
SAFB WILD-TYPE	70	72	33	62

'SAFB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.37

Table S4657. Gene #474: 'SAFB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SAFB MUTATED	1	4	2	0	2
SAFB WILD-TYPE	15	58	49	65	53

'SAFB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.098

Table S4658. Gene #474: 'SAFB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SAFB MUTATED	1	5	2	1
SAFB WILD-TYPE	97	39	48	56

Figure S1677. Get High-res Image Gene #474: 'SAFB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SAFB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.19

Table S4659. Gene #474: 'SAFB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SAFB MUTATED	3	4	0	0	0
SAFB WILD-TYPE	59	55	40	37	59

'SAFB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4660. Gene #474: 'SAFB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SAFB MUTATED	3	1	3
SAFB WILD-TYPE	103	53	94

'SAFB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.68

Table S4661. Gene #474: 'SAFB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SAFB MUTATED	4	4	1
SAFB WILD-TYPE	119	91	70

'SAFB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.65

Table S4662. Gene #474: 'SAFB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SAFB MUTATED	5	3	1
SAFB WILD-TYPE	152	60	68

'SAFB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.79

Table S4663. Gene #474: 'SAFB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SAFB MUTATED	0	0	2	1	0	3
SAFB WILD-TYPE	33	19	57	38	16	42

'SAFB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 0.96

Table S4664. Gene #474: 'SAFB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SAFB MUTATED	2	1	0	1	1	1
SAFB WILD-TYPE	45	38	35	31	22	34

'CD93 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.37

Table S4665. Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CD93 MUTATED	1	8	0	1	1
CD93 WILD-TYPE	78	118	27	42	11

'CD93 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.092

Table S4666. Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CD93 MUTATED	1	7	1	0
CD93 WILD-TYPE	70	69	33	63

Figure S1678. Get High-res Image Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD93 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.12

Table S4667. Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CD93 MUTATED	0	5	5	0	1
CD93 WILD-TYPE	16	57	46	65	54

Figure S1679. Get High-res Image Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CD93 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00146 (Fisher's exact test), Q value = 0.023

Table S4668. Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CD93 MUTATED	1	7	2	1
CD93 WILD-TYPE	97	37	48	56

Figure S1680. Get High-res Image Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CD93 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S4669. Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CD93 MUTATED	4	1	0	3	1
CD93 WILD-TYPE	58	58	40	34	58

'CD93 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0473 (Fisher's exact test), Q value = 0.15

Table S4670. Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CD93 MUTATED	1	1	7
CD93 WILD-TYPE	105	53	90

Figure S1681. Get High-res Image Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CD93 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.11

Table S4671. Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CD93 MUTATED	8	0	3
CD93 WILD-TYPE	115	95	68

Figure S1682. Get High-res Image Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CD93 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.27

Table S4672. Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CD93 MUTATED	9	0	2
CD93 WILD-TYPE	148	63	67

'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.41

Table S4673. Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CD93 MUTATED	2	2	2	1	0	0
CD93 WILD-TYPE	31	17	57	38	16	45

'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 0.82

Table S4674. Gene #475: 'CD93 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CD93 MUTATED	2	0	1	2	1	1
CD93 WILD-TYPE	45	39	34	30	22	34

'ERBB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.57

Table S4675. Gene #476: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ERBB4 MUTATED	7	20	5	4	2
ERBB4 WILD-TYPE	72	106	22	39	10

'ERBB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.14

Table S4676. Gene #476: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ERBB4 MUTATED	7	17	4	4
ERBB4 WILD-TYPE	64	59	30	59

Figure S1683. Get High-res Image Gene #476: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ERBB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 0.9

Table S4677. Gene #476: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ERBB4 MUTATED	1	11	9	9	8
ERBB4 WILD-TYPE	15	51	42	56	47

'ERBB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.069

Table S4678. Gene #476: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ERBB4 MUTATED	10	13	4	11
ERBB4 WILD-TYPE	88	31	46	46

Figure S1684. Get High-res Image Gene #476: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ERBB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.15

Table S4679. Gene #476: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ERBB4 MUTATED	12	6	3	10	5
ERBB4 WILD-TYPE	50	53	37	27	54

Figure S1685. Get High-res Image Gene #476: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ERBB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.39

Table S4680. Gene #476: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ERBB4 MUTATED	11	7	18
ERBB4 WILD-TYPE	95	47	79

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.32

Table S4681. Gene #476: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ERBB4 MUTATED	21	8	10
ERBB4 WILD-TYPE	102	87	61

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.51

Table S4682. Gene #476: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ERBB4 MUTATED	24	5	10
ERBB4 WILD-TYPE	133	58	59

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.78

Table S4683. Gene #476: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ERBB4 MUTATED	5	5	8	5	3	5
ERBB4 WILD-TYPE	28	14	51	34	13	40

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 0.89

Table S4684. Gene #476: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ERBB4 MUTATED	8	4	5	5	5	4
ERBB4 WILD-TYPE	39	35	30	27	18	31

'KRTAP10-9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S4685. Gene #477: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KRTAP10-9 MUTATED	1	7	0	0	1
KRTAP10-9 WILD-TYPE	78	119	27	43	11

'KRTAP10-9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.38

Table S4686. Gene #477: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KRTAP10-9 MUTATED	1	5	0	1
KRTAP10-9 WILD-TYPE	70	71	34	62

'KRTAP10-9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.47

Table S4687. Gene #477: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KRTAP10-9 MUTATED	1	3	2	0	2
KRTAP10-9 WILD-TYPE	15	59	49	65	53

'KRTAP10-9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.36

Table S4688. Gene #477: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KRTAP10-9 MUTATED	3	3	2	0
KRTAP10-9 WILD-TYPE	95	41	48	57

'KRTAP10-9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0546 (Fisher's exact test), Q value = 0.17

Table S4689. Gene #477: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KRTAP10-9 MUTATED	5	1	0	1	0
KRTAP10-9 WILD-TYPE	57	58	40	36	59

'KRTAP10-9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.3

Table S4690. Gene #477: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KRTAP10-9 MUTATED	1	1	5
KRTAP10-9 WILD-TYPE	105	53	92

'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 0.2

Table S4691. Gene #477: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KRTAP10-9 MUTATED	7	2	0
KRTAP10-9 WILD-TYPE	116	93	71

'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.35

Table S4692. Gene #477: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KRTAP10-9 MUTATED	7	2	0
KRTAP10-9 WILD-TYPE	150	61	69

'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 0.94

Table S4693. Gene #477: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KRTAP10-9 MUTATED	2	0	2	2	0	1
KRTAP10-9 WILD-TYPE	31	19	57	37	16	44

'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 0.84

Table S4694. Gene #477: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KRTAP10-9 MUTATED	3	1	1	1	1	0
KRTAP10-9 WILD-TYPE	44	38	34	31	22	35

'LYSMD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.33

Table S4695. Gene #478: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LYSMD3 MUTATED	1	7	1	0	1
LYSMD3 WILD-TYPE	78	119	26	43	11

'LYSMD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 0.19

Table S4696. Gene #478: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LYSMD3 MUTATED	0	6	1	2
LYSMD3 WILD-TYPE	71	70	33	61

'LYSMD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.32

Table S4697. Gene #478: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LYSMD3 MUTATED	1	1	0	2	4
LYSMD3 WILD-TYPE	15	61	51	63	51

'LYSMD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.73

Table S4698. Gene #478: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LYSMD3 MUTATED	2	2	1	3
LYSMD3 WILD-TYPE	96	42	49	54

'LYSMD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.33

Table S4699. Gene #478: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LYSMD3 MUTATED	5	2	2	1	0
LYSMD3 WILD-TYPE	57	57	38	36	59

'LYSMD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S4700. Gene #478: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LYSMD3 MUTATED	2	1	7
LYSMD3 WILD-TYPE	104	53	90

'LYSMD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.42

Table S4701. Gene #478: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LYSMD3 MUTATED	7	2	1
LYSMD3 WILD-TYPE	116	93	70

'LYSMD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.49

Table S4702. Gene #478: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LYSMD3 MUTATED	8	1	1
LYSMD3 WILD-TYPE	149	62	68

'LYSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 0.93

Table S4703. Gene #478: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LYSMD3 MUTATED	1	1	2	2	1	1
LYSMD3 WILD-TYPE	32	18	57	37	15	44

'LYSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S4704. Gene #478: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LYSMD3 MUTATED	2	1	1	2	1	1
LYSMD3 WILD-TYPE	45	38	34	30	22	34

'KCTD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.28

Table S4705. Gene #479: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KCTD9 MUTATED	0	6	1	2	1
KCTD9 WILD-TYPE	79	120	26	41	11

'KCTD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.55

Table S4706. Gene #479: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KCTD9 MUTATED	1	4	0	1
KCTD9 WILD-TYPE	70	72	34	62

'KCTD9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.9

Table S4707. Gene #479: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KCTD9 MUTATED	1	3	1	2	2
KCTD9 WILD-TYPE	15	59	50	63	53

'KCTD9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.63

Table S4708. Gene #479: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KCTD9 MUTATED	2	3	2	2
KCTD9 WILD-TYPE	96	41	48	55

'KCTD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S4709. Gene #479: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KCTD9 MUTATED	4	3	2	0	0
KCTD9 WILD-TYPE	58	56	38	37	59

'KCTD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.48

Table S4710. Gene #479: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KCTD9 MUTATED	5	0	4
KCTD9 WILD-TYPE	101	54	93

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.42

Table S4711. Gene #479: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KCTD9 MUTATED	7	2	1
KCTD9 WILD-TYPE	116	93	70

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.29

Table S4712. Gene #479: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KCTD9 MUTATED	8	2	0
KCTD9 WILD-TYPE	149	61	69

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.5

Table S4713. Gene #479: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KCTD9 MUTATED	0	2	1	1	0	2
KCTD9 WILD-TYPE	33	17	58	38	16	43

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S4714. Gene #479: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KCTD9 MUTATED	3	0	1	0	2	0
KCTD9 WILD-TYPE	44	39	34	32	21	35

'CREM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.7

Table S4715. Gene #480: 'CREM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CREM MUTATED	0	3	0	1	0
CREM WILD-TYPE	79	123	27	42	12

'CREM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0977 (Fisher's exact test), Q value = 0.23

Table S4716. Gene #480: 'CREM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CREM MUTATED	0	3	1	0
CREM WILD-TYPE	71	73	33	63

'CREM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.63

Table S4717. Gene #480: 'CREM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CREM MUTATED	0	2	0	0	1
CREM WILD-TYPE	16	60	51	65	54

'CREM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0427 (Fisher's exact test), Q value = 0.15

Table S4718. Gene #480: 'CREM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CREM MUTATED	0	2	1	0
CREM WILD-TYPE	98	42	49	57

Figure S1686. Get High-res Image Gene #480: 'CREM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CREM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.24

Table S4719. Gene #480: 'CREM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CREM MUTATED	3	0	0	1	0
CREM WILD-TYPE	59	59	40	36	59

'CREM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.57

Table S4720. Gene #480: 'CREM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CREM MUTATED	1	0	3
CREM WILD-TYPE	105	54	94

'CREM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0902 (Fisher's exact test), Q value = 0.22

Table S4721. Gene #480: 'CREM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CREM MUTATED	4	0	0
CREM WILD-TYPE	119	95	71

'CREM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.56

Table S4722. Gene #480: 'CREM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CREM MUTATED	4	0	0
CREM WILD-TYPE	153	63	69

'CREM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S4723. Gene #480: 'CREM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CREM MUTATED	1	2	1	0	0	0
CREM WILD-TYPE	32	17	58	39	16	45

'CREM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 0.79

Table S4724. Gene #480: 'CREM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CREM MUTATED	2	0	1	1	0	0
CREM WILD-TYPE	45	39	34	31	23	35

'MTMR11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4725. Gene #481: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MTMR11 MUTATED	2	4	1	1	0
MTMR11 WILD-TYPE	77	122	26	42	12

'MTMR11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.4

Table S4726. Gene #481: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MTMR11 MUTATED	2	4	0	0
MTMR11 WILD-TYPE	69	72	34	63

'MTMR11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 0.86

Table S4727. Gene #481: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MTMR11 MUTATED	0	2	1	2	0
MTMR11 WILD-TYPE	16	60	50	63	55

'MTMR11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.28

Table S4728. Gene #481: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MTMR11 MUTATED	0	1	2	2
MTMR11 WILD-TYPE	98	43	48	55

'MTMR11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 0.99

Table S4729. Gene #481: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MTMR11 MUTATED	2	1	2	1	2
MTMR11 WILD-TYPE	60	58	38	36	57

'MTMR11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0776 (Fisher's exact test), Q value = 0.2

Table S4730. Gene #481: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MTMR11 MUTATED	2	0	6
MTMR11 WILD-TYPE	104	54	91

'MTMR11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.56

Table S4731. Gene #481: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MTMR11 MUTATED	5	1	2
MTMR11 WILD-TYPE	118	94	69

'MTMR11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.49

Table S4732. Gene #481: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MTMR11 MUTATED	5	0	3
MTMR11 WILD-TYPE	152	63	66

'MTMR11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.66

Table S4733. Gene #481: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MTMR11 MUTATED	2	1	2	1	0	0
MTMR11 WILD-TYPE	31	18	57	38	16	45

'MTMR11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.35

Table S4734. Gene #481: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MTMR11 MUTATED	4	0	1	0	0	1
MTMR11 WILD-TYPE	43	39	34	32	23	34

'ANAPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.1

Table S4735. Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ANAPC1 MUTATED	0	11	0	1	0
ANAPC1 WILD-TYPE	79	115	27	42	12

Figure S1687. Get High-res Image Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ANAPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00891 (Fisher's exact test), Q value = 0.062

Table S4736. Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ANAPC1 MUTATED	0	7	3	1
ANAPC1 WILD-TYPE	71	69	31	62

Figure S1688. Get High-res Image Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ANAPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S4737. Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ANAPC1 MUTATED	0	5	2	0	4
ANAPC1 WILD-TYPE	16	57	49	65	51

'ANAPC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.006

Table S4738. Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ANAPC1 MUTATED	0	7	3	1
ANAPC1 WILD-TYPE	98	37	47	56

Figure S1689. Get High-res Image Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ANAPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.007

Table S4739. Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ANAPC1 MUTATED	8	0	0	3	0
ANAPC1 WILD-TYPE	54	59	40	34	59

Figure S1690. Get High-res Image Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ANAPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.14

Table S4740. Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ANAPC1 MUTATED	3	0	8
ANAPC1 WILD-TYPE	103	54	89

Figure S1691. Get High-res Image Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ANAPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 0.15

Table S4741. Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ANAPC1 MUTATED	10	2	1
ANAPC1 WILD-TYPE	113	93	70

Figure S1692. Get High-res Image Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ANAPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S4742. Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ANAPC1 MUTATED	10	2	1
ANAPC1 WILD-TYPE	147	61	68

'ANAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.4

Table S4743. Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ANAPC1 MUTATED	2	0	5	3	0	0
ANAPC1 WILD-TYPE	31	19	54	36	16	45

'ANAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 0.11

Table S4744. Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ANAPC1 MUTATED	3	0	2	1	4	0
ANAPC1 WILD-TYPE	44	39	33	31	19	35

Figure S1693. Get High-res Image Gene #482: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EYA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.49

Table S4745. Gene #483: 'EYA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EYA4 MUTATED	4	9	1	0	1
EYA4 WILD-TYPE	75	117	26	43	11

'EYA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.87

Table S4746. Gene #483: 'EYA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EYA4 MUTATED	4	5	1	2
EYA4 WILD-TYPE	67	71	33	61

'EYA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0457 (Fisher's exact test), Q value = 0.15

Table S4747. Gene #483: 'EYA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EYA4 MUTATED	2	2	4	0	4
EYA4 WILD-TYPE	14	60	47	65	51

Figure S1694. Get High-res Image Gene #483: 'EYA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EYA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.42

Table S4748. Gene #483: 'EYA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EYA4 MUTATED	6	4	1	1
EYA4 WILD-TYPE	92	40	49	56

'EYA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.52

Table S4749. Gene #483: 'EYA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EYA4 MUTATED	6	1	2	1	3
EYA4 WILD-TYPE	56	58	38	36	56

'EYA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.55

Table S4750. Gene #483: 'EYA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EYA4 MUTATED	5	1	7
EYA4 WILD-TYPE	101	53	90

'EYA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S4751. Gene #483: 'EYA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EYA4 MUTATED	10	3	2
EYA4 WILD-TYPE	113	92	69

'EYA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.43

Table S4752. Gene #483: 'EYA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EYA4 MUTATED	11	1	3
EYA4 WILD-TYPE	146	62	66

'EYA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4753. Gene #483: 'EYA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EYA4 MUTATED	1	1	3	1	0	2
EYA4 WILD-TYPE	32	18	56	38	16	43

'EYA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 0.93

Table S4754. Gene #483: 'EYA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EYA4 MUTATED	3	1	2	1	0	1
EYA4 WILD-TYPE	44	38	33	31	23	34

'H2AFY2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 0.85

Table S4755. Gene #484: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
H2AFY2 MUTATED	1	5	0	1	0
H2AFY2 WILD-TYPE	78	121	27	42	12

'H2AFY2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.29

Table S4756. Gene #484: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
H2AFY2 MUTATED	1	4	0	0
H2AFY2 WILD-TYPE	70	72	34	63

'H2AFY2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 0.96

Table S4757. Gene #484: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
H2AFY2 MUTATED	0	2	2	1	2
H2AFY2 WILD-TYPE	16	60	49	64	53

'H2AFY2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.59

Table S4758. Gene #484: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
H2AFY2 MUTATED	1	2	2	2
H2AFY2 WILD-TYPE	97	42	48	55

'H2AFY2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.81

Table S4759. Gene #484: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
H2AFY2 MUTATED	1	2	2	0	1
H2AFY2 WILD-TYPE	61	57	38	37	58

'H2AFY2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 0.92

Table S4760. Gene #484: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
H2AFY2 MUTATED	2	1	3
H2AFY2 WILD-TYPE	104	53	94

'H2AFY2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.72

Table S4761. Gene #484: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
H2AFY2 MUTATED	4	1	2
H2AFY2 WILD-TYPE	119	94	69

'H2AFY2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.46

Table S4762. Gene #484: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
H2AFY2 MUTATED	4	0	3
H2AFY2 WILD-TYPE	153	63	66

'H2AFY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.12

Table S4763. Gene #484: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
H2AFY2 MUTATED	2	2	0	1	0	0
H2AFY2 WILD-TYPE	31	17	59	38	16	45

Figure S1695. Get High-res Image Gene #484: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'H2AFY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.74

Table S4764. Gene #484: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
H2AFY2 MUTATED	2	0	0	1	1	1
H2AFY2 WILD-TYPE	45	39	35	31	22	34

'RDX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 0.8

Table S4765. Gene #485: 'RDX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RDX MUTATED	2	5	0	0	0
RDX WILD-TYPE	77	121	27	43	12

'RDX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.37

Table S4766. Gene #485: 'RDX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RDX MUTATED	2	1	2	0
RDX WILD-TYPE	69	75	32	63

'RDX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.35

Table S4767. Gene #485: 'RDX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RDX MUTATED	0	4	1	0	1
RDX WILD-TYPE	16	58	50	65	54

'RDX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0021 (Fisher's exact test), Q value = 0.028

Table S4768. Gene #485: 'RDX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RDX MUTATED	0	4	2	0
RDX WILD-TYPE	98	40	48	57

Figure S1696. Get High-res Image Gene #485: 'RDX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RDX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.55

Table S4769. Gene #485: 'RDX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RDX MUTATED	3	0	1	0	1
RDX WILD-TYPE	59	59	39	37	58

'RDX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.65

Table S4770. Gene #485: 'RDX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RDX MUTATED	2	0	3
RDX WILD-TYPE	104	54	94

'RDX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.72

Table S4771. Gene #485: 'RDX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RDX MUTATED	4	1	2
RDX WILD-TYPE	119	94	69

'RDX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.63

Table S4772. Gene #485: 'RDX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RDX MUTATED	5	0	2
RDX WILD-TYPE	152	63	67

'RDX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.56

Table S4773. Gene #485: 'RDX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RDX MUTATED	2	0	1	2	0	0
RDX WILD-TYPE	31	19	58	37	16	45

'RDX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0592 (Fisher's exact test), Q value = 0.17

Table S4774. Gene #485: 'RDX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RDX MUTATED	0	0	1	0	2	2
RDX WILD-TYPE	47	39	34	32	21	33

'TAF7L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.37

Table S4775. Gene #486: 'TAF7L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TAF7L MUTATED	0	6	0	2	0
TAF7L WILD-TYPE	79	120	27	41	12

'TAF7L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.082

Table S4776. Gene #486: 'TAF7L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TAF7L MUTATED	0	2	4	2
TAF7L WILD-TYPE	71	74	30	61

Figure S1697. Get High-res Image Gene #486: 'TAF7L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TAF7L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.55

Table S4777. Gene #486: 'TAF7L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TAF7L MUTATED	1	4	1	1	1
TAF7L WILD-TYPE	15	58	50	64	54

'TAF7L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.43

Table S4778. Gene #486: 'TAF7L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TAF7L MUTATED	1	2	3	2
TAF7L WILD-TYPE	97	42	47	55

'TAF7L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0033

Table S4779. Gene #486: 'TAF7L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TAF7L MUTATED	8	0	0	0	0
TAF7L WILD-TYPE	54	59	40	37	59

Figure S1698. Get High-res Image Gene #486: 'TAF7L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TAF7L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 0.87

Table S4780. Gene #486: 'TAF7L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TAF7L MUTATED	3	1	4
TAF7L WILD-TYPE	103	53	93

'TAF7L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00251 (Fisher's exact test), Q value = 0.031

Table S4781. Gene #486: 'TAF7L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TAF7L MUTATED	8	0	0
TAF7L WILD-TYPE	115	95	71

Figure S1699. Get High-res Image Gene #486: 'TAF7L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TAF7L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S4782. Gene #486: 'TAF7L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TAF7L MUTATED	7	1	0
TAF7L WILD-TYPE	150	62	69

'TAF7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.44

Table S4783. Gene #486: 'TAF7L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TAF7L MUTATED	0	1	4	1	0	0
TAF7L WILD-TYPE	33	18	55	38	16	45

'TAF7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 0.15

Table S4784. Gene #486: 'TAF7L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TAF7L MUTATED	1	0	3	0	2	0
TAF7L WILD-TYPE	46	39	32	32	21	35

Figure S1700. Get High-res Image Gene #486: 'TAF7L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OPLAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.16

Table S4785. Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OPLAH MUTATED	0	10	2	2	0
OPLAH WILD-TYPE	79	116	25	41	12

'OPLAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0761 (Fisher's exact test), Q value = 0.2

Table S4786. Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OPLAH MUTATED	1	7	2	1
OPLAH WILD-TYPE	70	69	32	62

'OPLAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00793 (Fisher's exact test), Q value = 0.058

Table S4787. Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OPLAH MUTATED	1	1	6	0	5
OPLAH WILD-TYPE	15	61	45	65	50

Figure S1701. Get High-res Image Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OPLAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.006

Table S4788. Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OPLAH MUTATED	3	9	0	1
OPLAH WILD-TYPE	95	35	50	56

Figure S1702. Get High-res Image Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OPLAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.1

Table S4789. Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OPLAH MUTATED	6	1	0	4	1
OPLAH WILD-TYPE	56	58	40	33	58

Figure S1703. Get High-res Image Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OPLAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.092

Table S4790. Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OPLAH MUTATED	3	0	9
OPLAH WILD-TYPE	103	54	88

Figure S1704. Get High-res Image Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OPLAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.1

Table S4791. Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OPLAH MUTATED	11	2	1
OPLAH WILD-TYPE	112	93	70

Figure S1705. Get High-res Image Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OPLAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.32

Table S4792. Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OPLAH MUTATED	11	2	1
OPLAH WILD-TYPE	146	61	68

'OPLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.73

Table S4793. Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OPLAH MUTATED	3	2	2	2	0	2
OPLAH WILD-TYPE	30	17	57	37	16	43

'OPLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 0.86

Table S4794. Gene #487: 'OPLAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OPLAH MUTATED	4	2	1	1	2	1
OPLAH WILD-TYPE	43	37	34	31	21	34

'ACACB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00249 (Fisher's exact test), Q value = 0.031

Table S4795. Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ACACB MUTATED	1	20	4	2	1
ACACB WILD-TYPE	78	106	23	41	11

Figure S1706. Get High-res Image Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACACB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0084

Table S4796. Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ACACB MUTATED	1	12	7	2
ACACB WILD-TYPE	70	64	27	61

Figure S1707. Get High-res Image Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ACACB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S4797. Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ACACB MUTATED	1	5	6	4	11
ACACB WILD-TYPE	15	57	45	61	44

'ACACB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0053

Table S4798. Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ACACB MUTATED	3	13	5	6
ACACB WILD-TYPE	95	31	45	51

Figure S1708. Get High-res Image Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ACACB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00109 (Fisher's exact test), Q value = 0.019

Table S4799. Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ACACB MUTATED	12	4	1	7	1
ACACB WILD-TYPE	50	55	39	30	58

Figure S1709. Get High-res Image Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ACACB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S4800. Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ACACB MUTATED	8	3	14
ACACB WILD-TYPE	98	51	83

'ACACB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 0.19

Table S4801. Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ACACB MUTATED	18	6	4
ACACB WILD-TYPE	105	89	67

'ACACB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.067

Table S4802. Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ACACB MUTATED	21	6	1
ACACB WILD-TYPE	136	57	68

Figure S1710. Get High-res Image Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ACACB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.45

Table S4803. Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ACACB MUTATED	2	4	6	1	1	4
ACACB WILD-TYPE	31	15	53	38	15	41

'ACACB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S4804. Gene #488: 'ACACB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ACACB MUTATED	5	2	6	3	2	0
ACACB WILD-TYPE	42	37	29	29	21	35

'TNS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.28

Table S4805. Gene #489: 'TNS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TNS4 MUTATED	2	10	0	0	0
TNS4 WILD-TYPE	77	116	27	43	12

'TNS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.62

Table S4806. Gene #489: 'TNS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TNS4 MUTATED	2	5	1	1
TNS4 WILD-TYPE	69	71	33	62

'TNS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S4807. Gene #489: 'TNS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TNS4 MUTATED	0	5	4	0	3
TNS4 WILD-TYPE	16	57	47	65	52

'TNS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.33

Table S4808. Gene #489: 'TNS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TNS4 MUTATED	3	4	4	1
TNS4 WILD-TYPE	95	40	46	56

'TNS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.21

Table S4809. Gene #489: 'TNS4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TNS4 MUTATED	5	1	0	4	2
TNS4 WILD-TYPE	57	58	40	33	57

'TNS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 0.82

Table S4810. Gene #489: 'TNS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TNS4 MUTATED	4	2	6
TNS4 WILD-TYPE	102	52	91

'TNS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.39

Table S4811. Gene #489: 'TNS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TNS4 MUTATED	8	2	2
TNS4 WILD-TYPE	115	93	69

'TNS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S4812. Gene #489: 'TNS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TNS4 MUTATED	8	2	2
TNS4 WILD-TYPE	149	61	67

'TNS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 0.87

Table S4813. Gene #489: 'TNS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TNS4 MUTATED	2	0	4	2	0	1
TNS4 WILD-TYPE	31	19	55	37	16	44

'TNS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.47

Table S4814. Gene #489: 'TNS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TNS4 MUTATED	2	1	2	0	3	1
TNS4 WILD-TYPE	45	38	33	32	20	34

'CHRNB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.29

Table S4815. Gene #490: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CHRNB3 MUTATED	1	5	1	2	2
CHRNB3 WILD-TYPE	78	121	26	41	10

'CHRNB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.51

Table S4816. Gene #490: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CHRNB3 MUTATED	0	3	1	2
CHRNB3 WILD-TYPE	71	73	33	61

'CHRNB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 0.95

Table S4817. Gene #490: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CHRNB3 MUTATED	1	3	2	2	3
CHRNB3 WILD-TYPE	15	59	49	63	52

'CHRNB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 0.94

Table S4818. Gene #490: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CHRNB3 MUTATED	5	2	1	3
CHRNB3 WILD-TYPE	93	42	49	54

'CHRNB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.61

Table S4819. Gene #490: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CHRNB3 MUTATED	5	2	1	1	1
CHRNB3 WILD-TYPE	57	57	39	36	58

'CHRNB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S4820. Gene #490: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CHRNB3 MUTATED	2	1	7
CHRNB3 WILD-TYPE	104	53	90

'CHRNB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.1

Table S4821. Gene #490: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CHRNB3 MUTATED	9	2	0
CHRNB3 WILD-TYPE	114	93	71

Figure S1711. Get High-res Image Gene #490: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CHRNB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.43

Table S4822. Gene #490: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CHRNB3 MUTATED	9	1	1
CHRNB3 WILD-TYPE	148	62	68

'CHRNB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.74

Table S4823. Gene #490: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CHRNB3 MUTATED	2	0	1	1	1	1
CHRNB3 WILD-TYPE	31	19	58	38	15	44

'CHRNB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4824. Gene #490: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CHRNB3 MUTATED	1	1	1	1	1	1
CHRNB3 WILD-TYPE	46	38	34	31	22	34

'CLGN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.34

Table S4825. Gene #491: 'CLGN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CLGN MUTATED	0	7	0	1	0
CLGN WILD-TYPE	79	119	27	42	12

'CLGN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.24

Table S4826. Gene #491: 'CLGN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CLGN MUTATED	0	4	0	1
CLGN WILD-TYPE	71	72	34	62

'CLGN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.3

Table S4827. Gene #491: 'CLGN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CLGN MUTATED	1	4	2	0	1
CLGN WILD-TYPE	15	58	49	65	54

'CLGN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.075

Table S4828. Gene #491: 'CLGN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CLGN MUTATED	2	5	1	0
CLGN WILD-TYPE	96	39	49	57

Figure S1712. Get High-res Image Gene #491: 'CLGN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CLGN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S4829. Gene #491: 'CLGN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CLGN MUTATED	3	2	0	2	0
CLGN WILD-TYPE	59	57	40	35	59

'CLGN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.71

Table S4830. Gene #491: 'CLGN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CLGN MUTATED	2	1	4
CLGN WILD-TYPE	104	53	93

'CLGN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 0.13

Table S4831. Gene #491: 'CLGN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CLGN MUTATED	7	1	0
CLGN WILD-TYPE	116	94	71

Figure S1713. Get High-res Image Gene #491: 'CLGN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CLGN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S4832. Gene #491: 'CLGN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CLGN MUTATED	7	1	0
CLGN WILD-TYPE	150	62	69

'CLGN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 0.93

Table S4833. Gene #491: 'CLGN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CLGN MUTATED	0	0	3	1	0	1
CLGN WILD-TYPE	33	19	56	38	16	44

'CLGN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.7

Table S4834. Gene #491: 'CLGN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CLGN MUTATED	2	1	2	0	0	0
CLGN WILD-TYPE	45	38	33	32	23	35

'MYCT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.65

Table S4835. Gene #492: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MYCT1 MUTATED	1	2	1	2	0
MYCT1 WILD-TYPE	78	124	26	41	12

'MYCT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.4

Table S4836. Gene #492: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MYCT1 MUTATED	3	1	0	0
MYCT1 WILD-TYPE	68	75	34	63

'MYCT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.39

Table S4837. Gene #492: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MYCT1 MUTATED	0	1	3	0	1
MYCT1 WILD-TYPE	16	61	48	65	54

'MYCT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0594 (Fisher's exact test), Q value = 0.17

Table S4838. Gene #492: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MYCT1 MUTATED	2	3	0	0
MYCT1 WILD-TYPE	96	41	50	57

'MYCT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.49

Table S4839. Gene #492: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MYCT1 MUTATED	3	0	0	1	1
MYCT1 WILD-TYPE	59	59	40	36	58

'MYCT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.65

Table S4840. Gene #492: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MYCT1 MUTATED	2	0	3
MYCT1 WILD-TYPE	104	54	94

'MYCT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S4841. Gene #492: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MYCT1 MUTATED	4	0	2
MYCT1 WILD-TYPE	119	95	69

'MYCT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.34

Table S4842. Gene #492: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MYCT1 MUTATED	3	0	3
MYCT1 WILD-TYPE	154	63	66

'MYCT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.75

Table S4843. Gene #492: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MYCT1 MUTATED	1	0	1	2	0	0
MYCT1 WILD-TYPE	32	19	58	37	16	45

'MYCT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0408 (Fisher's exact test), Q value = 0.14

Table S4844. Gene #492: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MYCT1 MUTATED	0	0	1	0	0	3
MYCT1 WILD-TYPE	47	39	34	32	23	32

Figure S1714. Get High-res Image Gene #492: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FOLH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.52

Table S4845. Gene #493: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FOLH1 MUTATED	1	7	2	1	0
FOLH1 WILD-TYPE	78	119	25	42	12

'FOLH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.62

Table S4846. Gene #493: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FOLH1 MUTATED	2	5	1	1
FOLH1 WILD-TYPE	69	71	33	62

'FOLH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.43

Table S4847. Gene #493: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FOLH1 MUTATED	1	5	3	1	1
FOLH1 WILD-TYPE	15	57	48	64	54

'FOLH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.42

Table S4848. Gene #493: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FOLH1 MUTATED	3	4	3	1
FOLH1 WILD-TYPE	95	40	47	56

'FOLH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 0.95

Table S4849. Gene #493: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FOLH1 MUTATED	3	1	1	1	1
FOLH1 WILD-TYPE	59	58	39	36	58

'FOLH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.71

Table S4850. Gene #493: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FOLH1 MUTATED	2	1	4
FOLH1 WILD-TYPE	104	53	93

'FOLH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4851. Gene #493: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FOLH1 MUTATED	5	4	2
FOLH1 WILD-TYPE	118	91	69

'FOLH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 0.9

Table S4852. Gene #493: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FOLH1 MUTATED	6	3	2
FOLH1 WILD-TYPE	151	60	67

'FOLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.53

Table S4853. Gene #493: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FOLH1 MUTATED	2	0	5	0	0	2
FOLH1 WILD-TYPE	31	19	54	39	16	43

'FOLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.6

Table S4854. Gene #493: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FOLH1 MUTATED	2	1	3	0	2	1
FOLH1 WILD-TYPE	45	38	32	32	21	34

'PIGT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0831 (Fisher's exact test), Q value = 0.21

Table S4855. Gene #494: 'PIGT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIGT MUTATED	0	6	2	0	0
PIGT WILD-TYPE	79	120	25	43	12

'PIGT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.12

Table S4856. Gene #494: 'PIGT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIGT MUTATED	0	6	0	2
PIGT WILD-TYPE	71	70	34	61

Figure S1715. Get High-res Image Gene #494: 'PIGT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIGT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.44

Table S4857. Gene #494: 'PIGT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PIGT MUTATED	1	3	0	1	1
PIGT WILD-TYPE	15	59	51	64	54

'PIGT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.43

Table S4858. Gene #494: 'PIGT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PIGT MUTATED	1	1	3	1
PIGT WILD-TYPE	97	43	47	56

'PIGT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.52

Table S4859. Gene #494: 'PIGT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PIGT MUTATED	3	1	1	2	0
PIGT WILD-TYPE	59	58	39	35	59

'PIGT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.27

Table S4860. Gene #494: 'PIGT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PIGT MUTATED	2	0	5
PIGT WILD-TYPE	104	54	92

'PIGT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.3

Table S4861. Gene #494: 'PIGT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PIGT MUTATED	6	2	0
PIGT WILD-TYPE	117	93	71

'PIGT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 0.86

Table S4862. Gene #494: 'PIGT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PIGT MUTATED	5	2	1
PIGT WILD-TYPE	152	61	68

'PIGT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S4863. Gene #494: 'PIGT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PIGT MUTATED	0	2	4	1	1	0
PIGT WILD-TYPE	33	17	55	38	15	45

'PIGT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.25

Table S4864. Gene #494: 'PIGT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PIGT MUTATED	4	0	3	0	0	1
PIGT WILD-TYPE	43	39	32	32	23	34

'SBF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00312 (Fisher's exact test), Q value = 0.034

Table S4865. Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SBF1 MUTATED	3	20	1	1	3
SBF1 WILD-TYPE	76	106	26	42	9

Figure S1716. Get High-res Image Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SBF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.073

Table S4866. Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SBF1 MUTATED	2	13	3	3
SBF1 WILD-TYPE	69	63	31	60

Figure S1717. Get High-res Image Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SBF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S4867. Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SBF1 MUTATED	2	9	4	2	6
SBF1 WILD-TYPE	14	53	47	63	49

'SBF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.4

Table S4868. Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SBF1 MUTATED	7	6	7	3
SBF1 WILD-TYPE	91	38	43	54

'SBF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.11

Table S4869. Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SBF1 MUTATED	12	2	4	5	3
SBF1 WILD-TYPE	50	57	36	32	56

Figure S1718. Get High-res Image Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SBF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00443 (Fisher's exact test), Q value = 0.042

Table S4870. Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SBF1 MUTATED	8	1	17
SBF1 WILD-TYPE	98	53	80

Figure S1719. Get High-res Image Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SBF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.1

Table S4871. Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SBF1 MUTATED	19	5	4
SBF1 WILD-TYPE	104	90	67

Figure S1720. Get High-res Image Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SBF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.11

Table S4872. Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SBF1 MUTATED	22	2	4
SBF1 WILD-TYPE	135	61	65

Figure S1721. Get High-res Image Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SBF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.26

Table S4873. Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SBF1 MUTATED	4	3	4	6	0	1
SBF1 WILD-TYPE	29	16	55	33	16	44

'SBF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S4874. Gene #495: 'SBF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SBF1 MUTATED	6	1	3	2	5	1
SBF1 WILD-TYPE	41	38	32	30	18	34

'SIK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.44

Table S4875. Gene #496: 'SIK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SIK1 MUTATED	0	5	0	0	0
SIK1 WILD-TYPE	79	121	27	43	12

'SIK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.49

Table S4876. Gene #496: 'SIK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SIK1 MUTATED	0	3	1	1
SIK1 WILD-TYPE	71	73	33	62

'SIK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S4877. Gene #496: 'SIK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SIK1 MUTATED	0	0	0	1	3
SIK1 WILD-TYPE	16	62	51	64	52

'SIK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.61

Table S4878. Gene #496: 'SIK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SIK1 MUTATED	1	1	0	2
SIK1 WILD-TYPE	97	43	50	55

'SIK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.8

Table S4879. Gene #496: 'SIK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SIK1 MUTATED	2	1	1	1	0
SIK1 WILD-TYPE	60	58	39	36	59

'SIK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.72

Table S4880. Gene #496: 'SIK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SIK1 MUTATED	1	1	3
SIK1 WILD-TYPE	105	53	94

'SIK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.46

Table S4881. Gene #496: 'SIK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SIK1 MUTATED	4	1	0
SIK1 WILD-TYPE	119	94	71

'SIK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.63

Table S4882. Gene #496: 'SIK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SIK1 MUTATED	4	1	0
SIK1 WILD-TYPE	153	62	69

'SIK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 0.93

Table S4883. Gene #496: 'SIK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SIK1 MUTATED	0	1	2	1	0	1
SIK1 WILD-TYPE	33	18	57	38	16	44

'SIK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 0.98

Table S4884. Gene #496: 'SIK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SIK1 MUTATED	1	1	1	1	1	0
SIK1 WILD-TYPE	46	38	34	31	22	35

'AGBL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.67

Table S4885. Gene #497: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AGBL5 MUTATED	1	7	1	2	0
AGBL5 WILD-TYPE	78	119	26	41	12

'AGBL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 0.19

Table S4886. Gene #497: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AGBL5 MUTATED	0	6	1	4
AGBL5 WILD-TYPE	71	70	33	59

'AGBL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 0.96

Table S4887. Gene #497: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
AGBL5 MUTATED	0	3	3	2	3
AGBL5 WILD-TYPE	16	59	48	63	52

'AGBL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 0.12

Table S4888. Gene #497: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
AGBL5 MUTATED	3	5	3	0
AGBL5 WILD-TYPE	95	39	47	57

Figure S1722. Get High-res Image Gene #497: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AGBL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.15

Table S4889. Gene #497: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
AGBL5 MUTATED	4	1	0	3	0
AGBL5 WILD-TYPE	58	58	40	34	59

Figure S1723. Get High-res Image Gene #497: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AGBL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.089 (Fisher's exact test), Q value = 0.22

Table S4890. Gene #497: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
AGBL5 MUTATED	1	1	6
AGBL5 WILD-TYPE	105	53	91

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.14

Table S4891. Gene #497: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
AGBL5 MUTATED	9	3	0
AGBL5 WILD-TYPE	114	92	71

Figure S1724. Get High-res Image Gene #497: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0976 (Fisher's exact test), Q value = 0.23

Table S4892. Gene #497: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
AGBL5 MUTATED	8	4	0
AGBL5 WILD-TYPE	149	59	69

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.77

Table S4893. Gene #497: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
AGBL5 MUTATED	1	0	5	2	0	1
AGBL5 WILD-TYPE	32	19	54	37	16	44

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.37

Table S4894. Gene #497: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
AGBL5 MUTATED	2	1	4	2	0	0
AGBL5 WILD-TYPE	45	38	31	30	23	35

'NDST2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.38

Table S4895. Gene #498: 'NDST2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NDST2 MUTATED	1	6	0	0	1
NDST2 WILD-TYPE	78	120	27	43	11

'NDST2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.49

Table S4896. Gene #498: 'NDST2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NDST2 MUTATED	0	3	1	1
NDST2 WILD-TYPE	71	73	33	62

'NDST2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.49

Table S4897. Gene #498: 'NDST2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NDST2 MUTATED	1	2	2	0	2
NDST2 WILD-TYPE	15	60	49	65	53

'NDST2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0315 (Fisher's exact test), Q value = 0.12

Table S4898. Gene #498: 'NDST2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NDST2 MUTATED	3	4	0	0
NDST2 WILD-TYPE	95	40	50	57

Figure S1725. Get High-res Image Gene #498: 'NDST2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NDST2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00156 (Fisher's exact test), Q value = 0.024

Table S4899. Gene #498: 'NDST2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NDST2 MUTATED	7	0	0	0	1
NDST2 WILD-TYPE	55	59	40	37	58

Figure S1726. Get High-res Image Gene #498: 'NDST2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NDST2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.41

Table S4900. Gene #498: 'NDST2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NDST2 MUTATED	3	0	5
NDST2 WILD-TYPE	103	54	92

'NDST2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 0.2

Table S4901. Gene #498: 'NDST2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NDST2 MUTATED	6	0	2
NDST2 WILD-TYPE	117	95	69

'NDST2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.36

Table S4902. Gene #498: 'NDST2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NDST2 MUTATED	7	0	1
NDST2 WILD-TYPE	150	63	68

'NDST2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.54

Table S4903. Gene #498: 'NDST2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NDST2 MUTATED	0	1	3	2	0	0
NDST2 WILD-TYPE	33	18	56	37	16	45

'NDST2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 0.68

Table S4904. Gene #498: 'NDST2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NDST2 MUTATED	2	0	2	0	1	1
NDST2 WILD-TYPE	45	39	33	32	22	34

'ZDHHC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.55

Table S4905. Gene #499: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZDHHC5 MUTATED	2	6	2	0	0
ZDHHC5 WILD-TYPE	77	120	25	43	12

'ZDHHC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 0.94

Table S4906. Gene #499: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZDHHC5 MUTATED	2	4	1	2
ZDHHC5 WILD-TYPE	69	72	33	61

'ZDHHC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.32

Table S4907. Gene #499: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZDHHC5 MUTATED	1	2	2	0	4
ZDHHC5 WILD-TYPE	15	60	49	65	51

'ZDHHC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0904 (Fisher's exact test), Q value = 0.22

Table S4908. Gene #499: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZDHHC5 MUTATED	3	4	2	0
ZDHHC5 WILD-TYPE	95	40	48	57

'ZDHHC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.46

Table S4909. Gene #499: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZDHHC5 MUTATED	4	0	2	1	2
ZDHHC5 WILD-TYPE	58	59	38	36	57

'ZDHHC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S4910. Gene #499: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZDHHC5 MUTATED	3	0	6
ZDHHC5 WILD-TYPE	103	54	91

'ZDHHC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S4911. Gene #499: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZDHHC5 MUTATED	7	1	2
ZDHHC5 WILD-TYPE	116	94	69

'ZDHHC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 0.95

Table S4912. Gene #499: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZDHHC5 MUTATED	5	2	3
ZDHHC5 WILD-TYPE	152	61	66

'ZDHHC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 0.78

Table S4913. Gene #499: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZDHHC5 MUTATED	3	1	3	1	0	1
ZDHHC5 WILD-TYPE	30	18	56	38	16	44

'ZDHHC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.55

Table S4914. Gene #499: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZDHHC5 MUTATED	3	1	3	2	0	0
ZDHHC5 WILD-TYPE	44	38	32	30	23	35

'GFOD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.39

Table S4915. Gene #500: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GFOD1 MUTATED	1	9	2	1	0
GFOD1 WILD-TYPE	78	117	25	42	12

'GFOD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.71

Table S4916. Gene #500: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GFOD1 MUTATED	1	4	1	3
GFOD1 WILD-TYPE	70	72	33	60

'GFOD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.11

Table S4917. Gene #500: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GFOD1 MUTATED	2	6	0	1	3
GFOD1 WILD-TYPE	14	56	51	64	52

Figure S1727. Get High-res Image Gene #500: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GFOD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00473 (Fisher's exact test), Q value = 0.043

Table S4918. Gene #500: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GFOD1 MUTATED	2	5	5	0
GFOD1 WILD-TYPE	96	39	45	57

Figure S1728. Get High-res Image Gene #500: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GFOD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.33

Table S4919. Gene #500: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GFOD1 MUTATED	7	2	1	2	1
GFOD1 WILD-TYPE	55	57	39	35	58

'GFOD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.36

Table S4920. Gene #500: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GFOD1 MUTATED	4	1	8
GFOD1 WILD-TYPE	102	53	89

'GFOD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.13

Table S4921. Gene #500: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GFOD1 MUTATED	10	1	2
GFOD1 WILD-TYPE	113	94	69

Figure S1729. Get High-res Image Gene #500: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GFOD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.25

Table S4922. Gene #500: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GFOD1 MUTATED	11	1	1
GFOD1 WILD-TYPE	146	62	68

'GFOD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.59

Table S4923. Gene #500: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GFOD1 MUTATED	0	1	5	2	0	1
GFOD1 WILD-TYPE	33	18	54	37	16	44

'GFOD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0768 (Fisher's exact test), Q value = 0.2

Table S4924. Gene #500: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GFOD1 MUTATED	2	1	5	1	0	0
GFOD1 WILD-TYPE	45	38	30	31	23	35

'KIAA1462 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.46

Table S4925. Gene #501: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1462 MUTATED	4	13	0	4	1
KIAA1462 WILD-TYPE	75	113	27	39	11

'KIAA1462 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 0.18

Table S4926. Gene #501: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1462 MUTATED	4	10	0	3
KIAA1462 WILD-TYPE	67	66	34	60

'KIAA1462 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.49

Table S4927. Gene #501: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIAA1462 MUTATED	1	6	4	2	7
KIAA1462 WILD-TYPE	15	56	47	63	48

'KIAA1462 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.31

Table S4928. Gene #501: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIAA1462 MUTATED	7	7	4	2
KIAA1462 WILD-TYPE	91	37	46	55

'KIAA1462 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.37

Table S4929. Gene #501: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIAA1462 MUTATED	8	2	1	3	3
KIAA1462 WILD-TYPE	54	57	39	34	56

'KIAA1462 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.079 (Fisher's exact test), Q value = 0.2

Table S4930. Gene #501: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIAA1462 MUTATED	4	2	11
KIAA1462 WILD-TYPE	102	52	86

'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.081

Table S4931. Gene #501: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIAA1462 MUTATED	15	2	5
KIAA1462 WILD-TYPE	108	93	66

Figure S1730. Get High-res Image Gene #501: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.34

Table S4932. Gene #501: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIAA1462 MUTATED	16	2	4
KIAA1462 WILD-TYPE	141	61	65

'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.61

Table S4933. Gene #501: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIAA1462 MUTATED	3	2	4	5	1	1
KIAA1462 WILD-TYPE	30	17	55	34	15	44

'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.4

Table S4934. Gene #501: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIAA1462 MUTATED	7	1	3	2	0	3
KIAA1462 WILD-TYPE	40	38	32	30	23	32

'OGFRL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.33

Table S4935. Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OGFRL1 MUTATED	1	7	1	0	1
OGFRL1 WILD-TYPE	78	119	26	43	11

'OGFRL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S4936. Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OGFRL1 MUTATED	1	4	1	0
OGFRL1 WILD-TYPE	70	72	33	63

'OGFRL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00449 (Fisher's exact test), Q value = 0.042

Table S4937. Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OGFRL1 MUTATED	0	7	2	0	0
OGFRL1 WILD-TYPE	16	55	49	65	55

Figure S1731. Get High-res Image Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OGFRL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00712 (Fisher's exact test), Q value = 0.055

Table S4938. Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OGFRL1 MUTATED	1	4	4	0
OGFRL1 WILD-TYPE	97	40	46	57

Figure S1732. Get High-res Image Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OGFRL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0486 (Fisher's exact test), Q value = 0.15

Table S4939. Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OGFRL1 MUTATED	6	0	1	2	1
OGFRL1 WILD-TYPE	56	59	39	35	58

Figure S1733. Get High-res Image Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OGFRL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0227 (Fisher's exact test), Q value = 0.1

Table S4940. Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OGFRL1 MUTATED	2	0	8
OGFRL1 WILD-TYPE	104	54	89

Figure S1734. Get High-res Image Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OGFRL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00683 (Fisher's exact test), Q value = 0.054

Table S4941. Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OGFRL1 MUTATED	9	0	1
OGFRL1 WILD-TYPE	114	95	70

Figure S1735. Get High-res Image Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OGFRL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0766 (Fisher's exact test), Q value = 0.2

Table S4942. Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OGFRL1 MUTATED	9	0	1
OGFRL1 WILD-TYPE	148	63	68

'OGFRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.72

Table S4943. Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OGFRL1 MUTATED	1	1	2	2	0	0
OGFRL1 WILD-TYPE	32	18	57	37	16	45

'OGFRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 0.93

Table S4944. Gene #502: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OGFRL1 MUTATED	2	0	1	1	1	1
OGFRL1 WILD-TYPE	45	39	34	31	22	34

'ZNF367 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.48

Table S4945. Gene #503: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF367 MUTATED	0	3	1	0	0
ZNF367 WILD-TYPE	79	123	26	43	12

'ZNF367 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S4946. Gene #503: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF367 MUTATED	0	3	0	0
ZNF367 WILD-TYPE	71	73	34	63

'ZNF367 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.64

Table S4947. Gene #503: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZNF367 MUTATED	0	1	2	0	1
ZNF367 WILD-TYPE	16	61	49	65	54

'ZNF367 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.16

Table S4948. Gene #503: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZNF367 MUTATED	1	3	0	0
ZNF367 WILD-TYPE	97	41	50	57

'ZNF367 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.71

Table S4949. Gene #503: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZNF367 MUTATED	2	1	0	1	0
ZNF367 WILD-TYPE	60	58	40	36	59

'ZNF367 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.31

Table S4950. Gene #503: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZNF367 MUTATED	0	1	3
ZNF367 WILD-TYPE	106	53	94

'ZNF367 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.6

Table S4951. Gene #503: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZNF367 MUTATED	3	1	0
ZNF367 WILD-TYPE	120	94	71

'ZNF367 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.75

Table S4952. Gene #503: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZNF367 MUTATED	3	1	0
ZNF367 WILD-TYPE	154	62	69

'ZNF367 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.57

Table S4953. Gene #503: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZNF367 MUTATED	0	1	0	1	0	1
ZNF367 WILD-TYPE	33	18	59	38	16	44

'ZNF367 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.77

Table S4954. Gene #503: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZNF367 MUTATED	1	1	0	0	1	0
ZNF367 WILD-TYPE	46	38	35	32	22	35

'PHF20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 0.91

Table S4955. Gene #504: 'PHF20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PHF20 MUTATED	2	7	1	1	0
PHF20 WILD-TYPE	77	119	26	42	12

'PHF20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 0.82

Table S4956. Gene #504: 'PHF20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PHF20 MUTATED	1	3	1	3
PHF20 WILD-TYPE	70	73	33	60

'PHF20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S4957. Gene #504: 'PHF20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PHF20 MUTATED	1	2	2	1	3
PHF20 WILD-TYPE	15	60	49	64	52

'PHF20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.15

Table S4958. Gene #504: 'PHF20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PHF20 MUTATED	2	5	1	1
PHF20 WILD-TYPE	96	39	49	56

Figure S1736. Get High-res Image Gene #504: 'PHF20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PHF20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.14

Table S4959. Gene #504: 'PHF20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PHF20 MUTATED	3	0	0	4	3
PHF20 WILD-TYPE	59	59	40	33	56

Figure S1737. Get High-res Image Gene #504: 'PHF20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PHF20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.32

Table S4960. Gene #504: 'PHF20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PHF20 MUTATED	4	0	6
PHF20 WILD-TYPE	102	54	91

'PHF20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S4961. Gene #504: 'PHF20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PHF20 MUTATED	8	1	2
PHF20 WILD-TYPE	115	94	69

'PHF20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.27

Table S4962. Gene #504: 'PHF20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PHF20 MUTATED	9	0	2
PHF20 WILD-TYPE	148	63	67

'PHF20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.56

Table S4963. Gene #504: 'PHF20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PHF20 MUTATED	2	1	4	1	0	0
PHF20 WILD-TYPE	31	18	55	38	16	45

'PHF20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0476 (Fisher's exact test), Q value = 0.15

Table S4964. Gene #504: 'PHF20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PHF20 MUTATED	5	0	2	0	1	0
PHF20 WILD-TYPE	42	39	33	32	22	35

Figure S1738. Get High-res Image Gene #504: 'PHF20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM186B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.14

Table S4965. Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM186B MUTATED	0	9	1	0	0
FAM186B WILD-TYPE	79	117	26	43	12

Figure S1739. Get High-res Image Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM186B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.098

Table S4966. Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM186B MUTATED	0	5	1	0
FAM186B WILD-TYPE	71	71	33	63

Figure S1740. Get High-res Image Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM186B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.13

Table S4967. Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FAM186B MUTATED	0	5	0	0	3
FAM186B WILD-TYPE	16	57	51	65	52

Figure S1741. Get High-res Image Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FAM186B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00036 (Fisher's exact test), Q value = 0.0097

Table S4968. Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FAM186B MUTATED	0	5	3	0
FAM186B WILD-TYPE	98	39	47	57

Figure S1742. Get High-res Image Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM186B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.12

Table S4969. Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FAM186B MUTATED	4	0	2	3	0
FAM186B WILD-TYPE	58	59	38	34	59

Figure S1743. Get High-res Image Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM186B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S4970. Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FAM186B MUTATED	2	1	6
FAM186B WILD-TYPE	104	53	91

'FAM186B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00743 (Fisher's exact test), Q value = 0.056

Table S4971. Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FAM186B MUTATED	9	0	1
FAM186B WILD-TYPE	114	95	70

Figure S1744. Get High-res Image Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM186B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.069

Table S4972. Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FAM186B MUTATED	10	0	0
FAM186B WILD-TYPE	147	63	69

Figure S1745. Get High-res Image Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM186B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.71

Table S4973. Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FAM186B MUTATED	1	1	2	2	0	0
FAM186B WILD-TYPE	32	18	57	37	16	45

'FAM186B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.1

Table S4974. Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FAM186B MUTATED	5	0	1	0	0	0
FAM186B WILD-TYPE	42	39	34	32	23	35

Figure S1746. Get High-res Image Gene #505: 'FAM186B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EPB49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.37

Table S4975. Gene #506: 'EPB49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EPB49 MUTATED	0	6	0	2	0
EPB49 WILD-TYPE	79	120	27	41	12

'EPB49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.49

Table S4976. Gene #506: 'EPB49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EPB49 MUTATED	0	3	1	1
EPB49 WILD-TYPE	71	73	33	62

'EPB49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.44

Table S4977. Gene #506: 'EPB49 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EPB49 MUTATED	0	3	1	0	3
EPB49 WILD-TYPE	16	59	50	65	52

'EPB49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S4978. Gene #506: 'EPB49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EPB49 MUTATED	2	2	3	0
EPB49 WILD-TYPE	96	42	47	57

'EPB49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.086

Table S4979. Gene #506: 'EPB49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EPB49 MUTATED	6	1	0	1	0
EPB49 WILD-TYPE	56	58	40	36	59

Figure S1747. Get High-res Image Gene #506: 'EPB49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPB49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.56

Table S4980. Gene #506: 'EPB49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EPB49 MUTATED	2	1	5
EPB49 WILD-TYPE	104	53	92

'EPB49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.13

Table S4981. Gene #506: 'EPB49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EPB49 MUTATED	7	1	0
EPB49 WILD-TYPE	116	94	71

Figure S1748. Get High-res Image Gene #506: 'EPB49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPB49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.45

Table S4982. Gene #506: 'EPB49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EPB49 MUTATED	6	2	0
EPB49 WILD-TYPE	151	61	69

'EPB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.75

Table S4983. Gene #506: 'EPB49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EPB49 MUTATED	1	1	1	1	0	0
EPB49 WILD-TYPE	32	18	58	38	16	45

'EPB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.4

Table S4984. Gene #506: 'EPB49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EPB49 MUTATED	3	0	1	0	0	0
EPB49 WILD-TYPE	44	39	34	32	23	35

'MDM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.63

Table S4985. Gene #507: 'MDM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MDM2 MUTATED	0	4	0	1	0
MDM2 WILD-TYPE	79	122	27	42	12

'MDM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.61

Table S4986. Gene #507: 'MDM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MDM2 MUTATED	0	2	0	2
MDM2 WILD-TYPE	71	74	34	61

'MDM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 0.92

Table S4987. Gene #507: 'MDM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MDM2 MUTATED	0	1	2	1	1
MDM2 WILD-TYPE	16	61	49	64	54

'MDM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S4988. Gene #507: 'MDM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MDM2 MUTATED	1	3	0	1
MDM2 WILD-TYPE	97	41	50	56

'MDM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 0.84

Table S4989. Gene #507: 'MDM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MDM2 MUTATED	1	1	0	1	0
MDM2 WILD-TYPE	61	58	40	36	59

'MDM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.47

Table S4990. Gene #507: 'MDM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MDM2 MUTATED	0	1	2
MDM2 WILD-TYPE	106	53	95

'MDM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.46

Table S4991. Gene #507: 'MDM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MDM2 MUTATED	4	1	0
MDM2 WILD-TYPE	119	94	71

'MDM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.63

Table S4992. Gene #507: 'MDM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MDM2 MUTATED	4	1	0
MDM2 WILD-TYPE	153	62	69

'SCN10A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.41

Table S4993. Gene #508: 'SCN10A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SCN10A MUTATED	4	16	4	4	0
SCN10A WILD-TYPE	75	110	23	39	12

'SCN10A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.63

Table S4994. Gene #508: 'SCN10A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SCN10A MUTATED	6	9	5	4
SCN10A WILD-TYPE	65	67	29	59

'SCN10A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.67

Table S4995. Gene #508: 'SCN10A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SCN10A MUTATED	1	6	8	4	5
SCN10A WILD-TYPE	15	56	43	61	50

'SCN10A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.72

Table S4996. Gene #508: 'SCN10A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SCN10A MUTATED	7	6	5	6
SCN10A WILD-TYPE	91	38	45	51

'SCN10A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.39

Table S4997. Gene #508: 'SCN10A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SCN10A MUTATED	11	4	2	3	5
SCN10A WILD-TYPE	51	55	38	34	54

'SCN10A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.55

Table S4998. Gene #508: 'SCN10A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SCN10A MUTATED	10	3	12
SCN10A WILD-TYPE	96	51	85

'SCN10A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0896 (Fisher's exact test), Q value = 0.22

Table S4999. Gene #508: 'SCN10A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SCN10A MUTATED	17	8	3
SCN10A WILD-TYPE	106	87	68

'SCN10A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S5000. Gene #508: 'SCN10A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SCN10A MUTATED	16	6	6
SCN10A WILD-TYPE	141	57	63

'SCN10A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.56

Table S5001. Gene #508: 'SCN10A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SCN10A MUTATED	4	4	7	3	1	2
SCN10A WILD-TYPE	29	15	52	36	15	43

'SCN10A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.7

Table S5002. Gene #508: 'SCN10A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SCN10A MUTATED	5	2	6	2	3	3
SCN10A WILD-TYPE	42	37	29	30	20	32

'SERPINA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.33

Table S5003. Gene #509: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SERPINA1 MUTATED	0	6	1	0	0
SERPINA1 WILD-TYPE	79	120	26	43	12

'SERPINA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5004. Gene #509: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SERPINA1 MUTATED	1	1	0	1
SERPINA1 WILD-TYPE	70	75	34	62

'SERPINA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 0.8

Table S5005. Gene #509: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SERPINA1 MUTATED	1	2	1	1	2
SERPINA1 WILD-TYPE	15	60	50	64	53

'SERPINA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.35

Table S5006. Gene #509: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SERPINA1 MUTATED	2	3	0	2
SERPINA1 WILD-TYPE	96	41	50	55

'SERPINA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.2

Table S5007. Gene #509: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SERPINA1 MUTATED	2	1	0	3	0
SERPINA1 WILD-TYPE	60	58	40	34	59

'SERPINA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.52

Table S5008. Gene #509: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SERPINA1 MUTATED	1	2	3
SERPINA1 WILD-TYPE	105	52	94

'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 0.86

Table S5009. Gene #509: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SERPINA1 MUTATED	4	2	1
SERPINA1 WILD-TYPE	119	93	70

'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.54

Table S5010. Gene #509: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SERPINA1 MUTATED	5	2	0
SERPINA1 WILD-TYPE	152	61	69

'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5011. Gene #509: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SERPINA1 MUTATED	0	0	1	1	0	1
SERPINA1 WILD-TYPE	33	19	58	38	16	44

'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.71

Table S5012. Gene #509: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SERPINA1 MUTATED	1	0	1	0	1	0
SERPINA1 WILD-TYPE	46	39	34	32	22	35

'LARP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.45

Table S5013. Gene #510: 'LARP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LARP1 MUTATED	1	7	1	0	0
LARP1 WILD-TYPE	78	119	26	43	12

'LARP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.1

Table S5014. Gene #510: 'LARP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LARP1 MUTATED	0	4	2	0
LARP1 WILD-TYPE	71	72	32	63

Figure S1749. Get High-res Image Gene #510: 'LARP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LARP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 0.1

Table S5015. Gene #510: 'LARP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LARP1 MUTATED	2	1	1	0	4
LARP1 WILD-TYPE	14	61	50	65	51

Figure S1750. Get High-res Image Gene #510: 'LARP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LARP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.35

Table S5016. Gene #510: 'LARP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LARP1 MUTATED	4	3	1	0
LARP1 WILD-TYPE	94	41	49	57

'LARP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.37

Table S5017. Gene #510: 'LARP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LARP1 MUTATED	4	1	3	0	1
LARP1 WILD-TYPE	58	58	37	37	58

'LARP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S5018. Gene #510: 'LARP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LARP1 MUTATED	3	0	6
LARP1 WILD-TYPE	103	54	91

'LARP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00119 (Fisher's exact test), Q value = 0.02

Table S5019. Gene #510: 'LARP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LARP1 MUTATED	9	0	0
LARP1 WILD-TYPE	114	95	71

Figure S1751. Get High-res Image Gene #510: 'LARP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LARP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.28

Table S5020. Gene #510: 'LARP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LARP1 MUTATED	8	0	1
LARP1 WILD-TYPE	149	63	68

'LARP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S5021. Gene #510: 'LARP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LARP1 MUTATED	1	0	3	2	0	0
LARP1 WILD-TYPE	32	19	56	37	16	45

'LARP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 0.15

Table S5022. Gene #510: 'LARP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LARP1 MUTATED	0	0	3	2	1	0
LARP1 WILD-TYPE	47	39	32	30	22	35

Figure S1752. Get High-res Image Gene #510: 'LARP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MLH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.44

Table S5023. Gene #511: 'MLH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MLH1 MUTATED	0	5	0	0	0
MLH1 WILD-TYPE	79	121	27	43	12

'MLH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.61

Table S5024. Gene #511: 'MLH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MLH1 MUTATED	0	2	0	2
MLH1 WILD-TYPE	71	74	34	61

'MLH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00706 (Fisher's exact test), Q value = 0.055

Table S5025. Gene #511: 'MLH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MLH1 MUTATED	0	5	0	0	0
MLH1 WILD-TYPE	16	57	51	65	55

Figure S1753. Get High-res Image Gene #511: 'MLH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MLH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.011

Table S5026. Gene #511: 'MLH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MLH1 MUTATED	0	0	5	0
MLH1 WILD-TYPE	98	44	45	57

Figure S1754. Get High-res Image Gene #511: 'MLH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MLH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S5027. Gene #511: 'MLH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MLH1 MUTATED	4	1	0	1	0
MLH1 WILD-TYPE	58	58	40	36	59

'MLH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.74

Table S5028. Gene #511: 'MLH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MLH1 MUTATED	3	0	3
MLH1 WILD-TYPE	103	54	94

'MLH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.085

Table S5029. Gene #511: 'MLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MLH1 MUTATED	6	0	0
MLH1 WILD-TYPE	117	95	71

Figure S1755. Get High-res Image Gene #511: 'MLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.49

Table S5030. Gene #511: 'MLH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MLH1 MUTATED	5	1	0
MLH1 WILD-TYPE	152	62	69

'MLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.57

Table S5031. Gene #511: 'MLH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MLH1 MUTATED	1	0	3	0	0	0
MLH1 WILD-TYPE	32	19	56	39	16	45

'MLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.46

Table S5032. Gene #511: 'MLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MLH1 MUTATED	2	0	2	0	0	0
MLH1 WILD-TYPE	45	39	33	32	23	35

'MAN2B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.077

Table S5033. Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAN2B1 MUTATED	0	11	1	2	2
MAN2B1 WILD-TYPE	79	115	26	41	10

Figure S1756. Get High-res Image Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAN2B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00245 (Fisher's exact test), Q value = 0.031

Table S5034. Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAN2B1 MUTATED	0	9	2	1
MAN2B1 WILD-TYPE	71	67	32	62

Figure S1757. Get High-res Image Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAN2B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 0.2

Table S5035. Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MAN2B1 MUTATED	2	4	3	0	4
MAN2B1 WILD-TYPE	14	58	48	65	51

'MAN2B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0551 (Fisher's exact test), Q value = 0.17

Table S5036. Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MAN2B1 MUTATED	5	6	1	1
MAN2B1 WILD-TYPE	93	38	49	56

'MAN2B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.014

Table S5037. Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MAN2B1 MUTATED	10	1	1	2	0
MAN2B1 WILD-TYPE	52	58	39	35	59

Figure S1758. Get High-res Image Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAN2B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00429 (Fisher's exact test), Q value = 0.041

Table S5038. Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MAN2B1 MUTATED	3	0	11
MAN2B1 WILD-TYPE	103	54	86

Figure S1759. Get High-res Image Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAN2B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.017

Table S5039. Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MAN2B1 MUTATED	14	1	1
MAN2B1 WILD-TYPE	109	94	70

Figure S1760. Get High-res Image Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAN2B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00238 (Fisher's exact test), Q value = 0.031

Table S5040. Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MAN2B1 MUTATED	15	1	0
MAN2B1 WILD-TYPE	142	62	69

Figure S1761. Get High-res Image Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAN2B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.55

Table S5041. Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MAN2B1 MUTATED	1	0	5	4	0	1
MAN2B1 WILD-TYPE	32	19	54	35	16	44

'MAN2B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.34

Table S5042. Gene #512: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MAN2B1 MUTATED	5	1	3	2	0	0
MAN2B1 WILD-TYPE	42	38	32	30	23	35

'SLC7A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.6

Table S5043. Gene #513: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC7A10 MUTATED	0	4	0	0	0
SLC7A10 WILD-TYPE	79	122	27	43	12

'SLC7A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S5044. Gene #513: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC7A10 MUTATED	0	4	0	1
SLC7A10 WILD-TYPE	71	72	34	62

'SLC7A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.31

Table S5045. Gene #513: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC7A10 MUTATED	1	2	0	0	1
SLC7A10 WILD-TYPE	15	60	51	65	54

'SLC7A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 0.83

Table S5046. Gene #513: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC7A10 MUTATED	2	1	1	0
SLC7A10 WILD-TYPE	96	43	49	57

'SLC7A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.32

Table S5047. Gene #513: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC7A10 MUTATED	3	0	1	1	0
SLC7A10 WILD-TYPE	59	59	39	36	59

'SLC7A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.72

Table S5048. Gene #513: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC7A10 MUTATED	1	1	3
SLC7A10 WILD-TYPE	105	53	94

'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 0.9

Table S5049. Gene #513: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC7A10 MUTATED	3	1	1
SLC7A10 WILD-TYPE	120	94	70

'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.4

Table S5050. Gene #513: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC7A10 MUTATED	5	0	0
SLC7A10 WILD-TYPE	152	63	69

'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.47

Table S5051. Gene #513: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC7A10 MUTATED	1	0	1	3	0	0
SLC7A10 WILD-TYPE	32	19	58	36	16	45

'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.74

Table S5052. Gene #513: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC7A10 MUTATED	2	0	1	1	1	0
SLC7A10 WILD-TYPE	45	39	34	31	22	35

'RGS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.72

Table S5053. Gene #514: 'RGS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RGS2 MUTATED	0	2	0	1	0
RGS2 WILD-TYPE	79	124	27	42	12

'RGS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.43

Table S5054. Gene #514: 'RGS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RGS2 MUTATED	0	0	1	0	2
RGS2 WILD-TYPE	16	62	50	65	53

'RGS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.36

Table S5055. Gene #514: 'RGS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RGS2 MUTATED	1	2	0	0
RGS2 WILD-TYPE	97	42	50	57

'RGS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 0.96

Table S5056. Gene #514: 'RGS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RGS2 MUTATED	1	0	1	0	1
RGS2 WILD-TYPE	61	59	39	37	58

'RGS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.71

Table S5057. Gene #514: 'RGS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RGS2 MUTATED	1	0	2
RGS2 WILD-TYPE	105	54	95

'RGS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S5058. Gene #514: 'RGS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RGS2 MUTATED	2	1	0
RGS2 WILD-TYPE	121	94	71

'RGS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5059. Gene #514: 'RGS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RGS2 MUTATED	2	0	1
RGS2 WILD-TYPE	155	63	68

'EAF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0359 (Fisher's exact test), Q value = 0.13

Table S5060. Gene #515: 'EAF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EAF2 MUTATED	0	4	0	1	2
EAF2 WILD-TYPE	79	122	27	42	10

Figure S1762. Get High-res Image Gene #515: 'EAF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EAF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.077

Table S5061. Gene #515: 'EAF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EAF2 MUTATED	0	5	0	0
EAF2 WILD-TYPE	71	71	34	63

Figure S1763. Get High-res Image Gene #515: 'EAF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EAF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 0.95

Table S5062. Gene #515: 'EAF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EAF2 MUTATED	0	1	1	1	2
EAF2 WILD-TYPE	16	61	50	64	53

'EAF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.66

Table S5063. Gene #515: 'EAF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EAF2 MUTATED	1	2	1	1
EAF2 WILD-TYPE	97	42	49	56

'EAF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S5064. Gene #515: 'EAF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EAF2 MUTATED	4	1	1	0	0
EAF2 WILD-TYPE	58	58	39	37	59

'EAF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S5065. Gene #515: 'EAF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EAF2 MUTATED	1	0	5
EAF2 WILD-TYPE	105	54	92

'EAF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 0.19

Table S5066. Gene #515: 'EAF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EAF2 MUTATED	6	1	0
EAF2 WILD-TYPE	117	94	71

'EAF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0701 (Fisher's exact test), Q value = 0.19

Table S5067. Gene #515: 'EAF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EAF2 MUTATED	7	0	0
EAF2 WILD-TYPE	150	63	69

'EAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.75

Table S5068. Gene #515: 'EAF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EAF2 MUTATED	1	1	1	1	0	0
EAF2 WILD-TYPE	32	18	58	38	16	45

'EAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.6

Table S5069. Gene #515: 'EAF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EAF2 MUTATED	2	0	1	0	1	0
EAF2 WILD-TYPE	45	39	34	32	22	35

'FAM82A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.48

Table S5070. Gene #516: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM82A1 MUTATED	0	3	1	0	0
FAM82A1 WILD-TYPE	79	123	26	43	12

'FAM82A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00316 (Fisher's exact test), Q value = 0.034

Table S5071. Gene #516: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FAM82A1 MUTATED	2	0	0	0	2
FAM82A1 WILD-TYPE	14	62	51	65	53

Figure S1764. Get High-res Image Gene #516: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FAM82A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.54

Table S5072. Gene #516: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FAM82A1 MUTATED	3	1	0	0
FAM82A1 WILD-TYPE	95	43	50	57

'FAM82A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S5073. Gene #516: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FAM82A1 MUTATED	2	0	2	0	0
FAM82A1 WILD-TYPE	60	59	38	37	59

'FAM82A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.57

Table S5074. Gene #516: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FAM82A1 MUTATED	1	0	3
FAM82A1 WILD-TYPE	105	54	94

'FAM82A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0899 (Fisher's exact test), Q value = 0.22

Table S5075. Gene #516: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FAM82A1 MUTATED	4	0	0
FAM82A1 WILD-TYPE	119	95	71

'FAM82A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 0.87

Table S5076. Gene #516: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FAM82A1 MUTATED	3	0	1
FAM82A1 WILD-TYPE	154	63	68

'PIWIL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S5077. Gene #517: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIWIL2 MUTATED	0	6	0	0	0
PIWIL2 WILD-TYPE	79	120	27	43	12

'PIWIL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.24

Table S5078. Gene #517: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIWIL2 MUTATED	0	4	0	1
PIWIL2 WILD-TYPE	71	72	34	62

'PIWIL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.43

Table S5079. Gene #517: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PIWIL2 MUTATED	1	2	2	0	1
PIWIL2 WILD-TYPE	15	60	49	65	54

'PIWIL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.3

Table S5080. Gene #517: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PIWIL2 MUTATED	2	3	1	0
PIWIL2 WILD-TYPE	96	41	49	57

'PIWIL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 0.13

Table S5081. Gene #517: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PIWIL2 MUTATED	4	0	0	1	0
PIWIL2 WILD-TYPE	58	59	40	36	59

Figure S1765. Get High-res Image Gene #517: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIWIL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.65

Table S5082. Gene #517: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PIWIL2 MUTATED	2	0	3
PIWIL2 WILD-TYPE	104	54	94

'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.084

Table S5083. Gene #517: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PIWIL2 MUTATED	6	0	0
PIWIL2 WILD-TYPE	117	95	71

Figure S1766. Get High-res Image Gene #517: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S5084. Gene #517: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PIWIL2 MUTATED	6	0	0
PIWIL2 WILD-TYPE	151	63	69

'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S5085. Gene #517: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PIWIL2 MUTATED	3	0	2	0	0	0
PIWIL2 WILD-TYPE	30	19	57	39	16	45

'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.31

Table S5086. Gene #517: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PIWIL2 MUTATED	3	0	2	0	0	0
PIWIL2 WILD-TYPE	44	39	33	32	23	35

'KCTD21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.49

Table S5087. Gene #518: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KCTD21 MUTATED	0	5	1	1	0
KCTD21 WILD-TYPE	79	121	26	42	12

'KCTD21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 0.97

Table S5088. Gene #518: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KCTD21 MUTATED	1	2	1	1
KCTD21 WILD-TYPE	70	74	33	62

'KCTD21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.72

Table S5089. Gene #518: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KCTD21 MUTATED	1	1	2	1	2
KCTD21 WILD-TYPE	15	61	49	64	53

'KCTD21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.58

Table S5090. Gene #518: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KCTD21 MUTATED	2	3	1	1
KCTD21 WILD-TYPE	96	41	49	56

'KCTD21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.42

Table S5091. Gene #518: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KCTD21 MUTATED	4	1	1	1	0
KCTD21 WILD-TYPE	58	58	39	36	59

'KCTD21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.65

Table S5092. Gene #518: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KCTD21 MUTATED	4	0	3
KCTD21 WILD-TYPE	102	54	94

'KCTD21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00753 (Fisher's exact test), Q value = 0.056

Table S5093. Gene #518: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KCTD21 MUTATED	7	0	0
KCTD21 WILD-TYPE	116	95	71

Figure S1767. Get High-res Image Gene #518: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KCTD21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0682 (Fisher's exact test), Q value = 0.19

Table S5094. Gene #518: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KCTD21 MUTATED	7	0	0
KCTD21 WILD-TYPE	150	63	69

'KCTD21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.2

Table S5095. Gene #518: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KCTD21 MUTATED	0	2	3	0	0	0
KCTD21 WILD-TYPE	33	17	56	39	16	45

'KCTD21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.46

Table S5096. Gene #518: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KCTD21 MUTATED	2	0	2	0	1	0
KCTD21 WILD-TYPE	45	39	33	32	22	35

'ITSN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.42

Table S5097. Gene #519: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ITSN2 MUTATED	2	11	1	1	1
ITSN2 WILD-TYPE	77	115	26	42	11

'ITSN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00521 (Fisher's exact test), Q value = 0.046

Table S5098. Gene #519: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ITSN2 MUTATED	0	8	2	1
ITSN2 WILD-TYPE	71	68	32	62

Figure S1768. Get High-res Image Gene #519: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ITSN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.53

Table S5099. Gene #519: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ITSN2 MUTATED	1	6	4	3	1
ITSN2 WILD-TYPE	15	56	47	62	54

'ITSN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.56

Table S5100. Gene #519: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ITSN2 MUTATED	5	5	3	2
ITSN2 WILD-TYPE	93	39	47	55

'ITSN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 0.19

Table S5101. Gene #519: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ITSN2 MUTATED	8	2	1	3	1
ITSN2 WILD-TYPE	54	57	39	34	58

'ITSN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S5102. Gene #519: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ITSN2 MUTATED	5	1	9
ITSN2 WILD-TYPE	101	53	88

'ITSN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.014

Table S5103. Gene #519: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ITSN2 MUTATED	14	2	0
ITSN2 WILD-TYPE	109	93	71

Figure S1769. Get High-res Image Gene #519: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ITSN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00222 (Fisher's exact test), Q value = 0.03

Table S5104. Gene #519: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ITSN2 MUTATED	15	1	0
ITSN2 WILD-TYPE	142	62	69

Figure S1770. Get High-res Image Gene #519: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ITSN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.21

Table S5105. Gene #519: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ITSN2 MUTATED	0	1	6	3	0	0
ITSN2 WILD-TYPE	33	18	53	36	16	45

'ITSN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0889 (Fisher's exact test), Q value = 0.22

Table S5106. Gene #519: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ITSN2 MUTATED	2	0	4	2	2	0
ITSN2 WILD-TYPE	45	39	31	30	21	35

'GLYR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 0.23

Table S5107. Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GLYR1 MUTATED	1	11	0	1	0
GLYR1 WILD-TYPE	78	115	27	42	12

'GLYR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.094

Table S5108. Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GLYR1 MUTATED	2	7	0	0
GLYR1 WILD-TYPE	69	69	34	63

Figure S1771. Get High-res Image Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GLYR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.098

Table S5109. Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GLYR1 MUTATED	0	7	1	0	3
GLYR1 WILD-TYPE	16	55	50	65	52

Figure S1772. Get High-res Image Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GLYR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00104 (Fisher's exact test), Q value = 0.019

Table S5110. Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GLYR1 MUTATED	1	6	4	0
GLYR1 WILD-TYPE	97	38	46	57

Figure S1773. Get High-res Image Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GLYR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.59

Table S5111. Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GLYR1 MUTATED	3	1	2	3	1
GLYR1 WILD-TYPE	59	58	38	34	58

'GLYR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0227 (Fisher's exact test), Q value = 0.1

Table S5112. Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GLYR1 MUTATED	2	0	8
GLYR1 WILD-TYPE	104	54	89

Figure S1774. Get High-res Image Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GLYR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.13

Table S5113. Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GLYR1 MUTATED	10	1	2
GLYR1 WILD-TYPE	113	94	69

Figure S1775. Get High-res Image Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GLYR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.084

Table S5114. Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GLYR1 MUTATED	12	0	1
GLYR1 WILD-TYPE	145	63	68

Figure S1776. Get High-res Image Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GLYR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0467 (Fisher's exact test), Q value = 0.15

Table S5115. Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GLYR1 MUTATED	2	3	1	2	0	0
GLYR1 WILD-TYPE	31	16	58	37	16	45

Figure S1777. Get High-res Image Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GLYR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.6

Table S5116. Gene #520: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GLYR1 MUTATED	2	0	1	3	1	1
GLYR1 WILD-TYPE	45	39	34	29	22	34

'PHACTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.17

Table S5117. Gene #521: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PHACTR1 MUTATED	0	7	1	0	1
PHACTR1 WILD-TYPE	79	119	26	43	11

'PHACTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.49

Table S5118. Gene #521: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PHACTR1 MUTATED	0	3	1	1
PHACTR1 WILD-TYPE	71	73	33	62

'PHACTR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 0.82

Table S5119. Gene #521: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PHACTR1 MUTATED	0	3	2	1	3
PHACTR1 WILD-TYPE	16	59	49	64	52

'PHACTR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.097

Table S5120. Gene #521: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PHACTR1 MUTATED	1	5	2	1
PHACTR1 WILD-TYPE	97	39	48	56

Figure S1778. Get High-res Image Gene #521: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PHACTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.26

Table S5121. Gene #521: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PHACTR1 MUTATED	2	2	0	3	0
PHACTR1 WILD-TYPE	60	57	40	34	59

'PHACTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S5122. Gene #521: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PHACTR1 MUTATED	2	0	5
PHACTR1 WILD-TYPE	104	54	92

'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S5123. Gene #521: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PHACTR1 MUTATED	6	3	0
PHACTR1 WILD-TYPE	117	92	71

'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.6

Table S5124. Gene #521: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PHACTR1 MUTATED	7	1	1
PHACTR1 WILD-TYPE	150	62	68

'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 0.87

Table S5125. Gene #521: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PHACTR1 MUTATED	1	0	1	1	1	1
PHACTR1 WILD-TYPE	32	19	58	38	15	44

'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 0.84

Table S5126. Gene #521: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PHACTR1 MUTATED	2	1	0	0	1	1
PHACTR1 WILD-TYPE	45	38	35	32	22	34

'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5127. Gene #522: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NRAS MUTATED	1	2	0	0	0
NRAS WILD-TYPE	78	124	27	43	12

'NRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S5128. Gene #522: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NRAS MUTATED	0	0	1	2
NRAS WILD-TYPE	71	76	33	61

'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.59

Table S5129. Gene #522: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NRAS MUTATED	0	0	0	1	2
NRAS WILD-TYPE	16	62	51	64	53

'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 0.93

Table S5130. Gene #522: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NRAS MUTATED	2	0	0	1
NRAS WILD-TYPE	96	44	50	56

'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S5131. Gene #522: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NRAS MUTATED	2	1	0
NRAS WILD-TYPE	121	94	71

'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 0.85

Table S5132. Gene #522: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NRAS MUTATED	2	1	0
NRAS WILD-TYPE	155	62	69

'STAU2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.59

Table S5133. Gene #523: 'STAU2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STAU2 MUTATED	1	6	1	0	0
STAU2 WILD-TYPE	78	120	26	43	12

'STAU2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.78

Table S5134. Gene #523: 'STAU2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
STAU2 MUTATED	1	1	1	0
STAU2 WILD-TYPE	70	75	33	63

'STAU2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0931 (Fisher's exact test), Q value = 0.22

Table S5135. Gene #523: 'STAU2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
STAU2 MUTATED	0	1	4	0	3
STAU2 WILD-TYPE	16	61	47	65	52

'STAU2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00114 (Fisher's exact test), Q value = 0.02

Table S5136. Gene #523: 'STAU2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
STAU2 MUTATED	1	6	0	1
STAU2 WILD-TYPE	97	38	50	56

Figure S1779. Get High-res Image Gene #523: 'STAU2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STAU2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.61

Table S5137. Gene #523: 'STAU2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
STAU2 MUTATED	1	0	2	1	2
STAU2 WILD-TYPE	61	59	38	36	57

'STAU2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.74

Table S5138. Gene #523: 'STAU2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
STAU2 MUTATED	3	0	3
STAU2 WILD-TYPE	103	54	94

'STAU2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.56

Table S5139. Gene #523: 'STAU2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
STAU2 MUTATED	5	1	2
STAU2 WILD-TYPE	118	94	69

'STAU2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 0.94

Table S5140. Gene #523: 'STAU2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
STAU2 MUTATED	5	1	2
STAU2 WILD-TYPE	152	62	67

'STAU2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0887 (Fisher's exact test), Q value = 0.22

Table S5141. Gene #523: 'STAU2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
STAU2 MUTATED	0	1	0	0	1	1
STAU2 WILD-TYPE	33	18	59	39	15	44

'STAU2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 0.82

Table S5142. Gene #523: 'STAU2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
STAU2 MUTATED	0	1	0	1	0	1
STAU2 WILD-TYPE	47	38	35	31	23	34

'SLC4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.16

Table S5143. Gene #524: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC4A3 MUTATED	1	10	0	2	2
SLC4A3 WILD-TYPE	78	116	27	41	10

'SLC4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0518 (Fisher's exact test), Q value = 0.16

Table S5144. Gene #524: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC4A3 MUTATED	1	7	3	1
SLC4A3 WILD-TYPE	70	69	31	62

'SLC4A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.21

Table S5145. Gene #524: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC4A3 MUTATED	1	7	2	1	1
SLC4A3 WILD-TYPE	15	55	49	64	54

'SLC4A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.47

Table S5146. Gene #524: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC4A3 MUTATED	3	2	5	2
SLC4A3 WILD-TYPE	95	42	45	55

'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 0.21

Table S5147. Gene #524: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC4A3 MUTATED	8	2	1	2	1
SLC4A3 WILD-TYPE	54	57	39	35	58

'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.11

Table S5148. Gene #524: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC4A3 MUTATED	2	2	10
SLC4A3 WILD-TYPE	104	52	87

Figure S1780. Get High-res Image Gene #524: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.099

Table S5149. Gene #524: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC4A3 MUTATED	11	1	3
SLC4A3 WILD-TYPE	112	94	68

Figure S1781. Get High-res Image Gene #524: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0594 (Fisher's exact test), Q value = 0.17

Table S5150. Gene #524: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC4A3 MUTATED	12	0	3
SLC4A3 WILD-TYPE	145	63	66

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.27

Table S5151. Gene #524: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC4A3 MUTATED	1	1	4	5	0	0
SLC4A3 WILD-TYPE	32	18	55	34	16	45

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0906 (Fisher's exact test), Q value = 0.22

Table S5152. Gene #524: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC4A3 MUTATED	3	0	3	2	3	0
SLC4A3 WILD-TYPE	44	39	32	30	20	35

'RAI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.21

Table S5153. Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RAI1 MUTATED	2	16	2	2	1
RAI1 WILD-TYPE	77	110	25	41	11

'RAI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.13

Table S5154. Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RAI1 MUTATED	3	12	1	3
RAI1 WILD-TYPE	68	64	33	60

Figure S1782. Get High-res Image Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RAI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S5155. Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RAI1 MUTATED	2	3	5	2	7
RAI1 WILD-TYPE	14	59	46	63	48

'RAI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.1

Table S5156. Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RAI1 MUTATED	6	8	4	1
RAI1 WILD-TYPE	92	36	46	56

Figure S1783. Get High-res Image Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RAI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.36

Table S5157. Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RAI1 MUTATED	8	2	3	5	3
RAI1 WILD-TYPE	54	57	37	32	56

'RAI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.083

Table S5158. Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RAI1 MUTATED	6	1	14
RAI1 WILD-TYPE	100	53	83

Figure S1784. Get High-res Image Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RAI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00778 (Fisher's exact test), Q value = 0.057

Table S5159. Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RAI1 MUTATED	17	3	3
RAI1 WILD-TYPE	106	92	68

Figure S1785. Get High-res Image Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RAI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.074

Table S5160. Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RAI1 MUTATED	19	3	1
RAI1 WILD-TYPE	138	60	68

Figure S1786. Get High-res Image Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RAI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.36

Table S5161. Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RAI1 MUTATED	2	4	3	4	0	2
RAI1 WILD-TYPE	31	15	56	35	16	43

'RAI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.33

Table S5162. Gene #525: 'RAI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RAI1 MUTATED	6	1	3	3	2	0
RAI1 WILD-TYPE	41	38	32	29	21	35

'PPP2R3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.067

Table S5163. Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PPP2R3B MUTATED	1	13	0	0	1
PPP2R3B WILD-TYPE	78	113	27	43	11

Figure S1787. Get High-res Image Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPP2R3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.28

Table S5164. Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PPP2R3B MUTATED	1	5	3	1
PPP2R3B WILD-TYPE	70	71	31	62

'PPP2R3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.68

Table S5165. Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PPP2R3B MUTATED	1	4	3	1	3
PPP2R3B WILD-TYPE	15	58	48	64	52

'PPP2R3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0056 (Fisher's exact test), Q value = 0.048

Table S5166. Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PPP2R3B MUTATED	2	7	2	1
PPP2R3B WILD-TYPE	96	37	48	56

Figure S1788. Get High-res Image Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PPP2R3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00095 (Fisher's exact test), Q value = 0.018

Table S5167. Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PPP2R3B MUTATED	10	0	2	1	1
PPP2R3B WILD-TYPE	52	59	38	36	58

Figure S1789. Get High-res Image Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PPP2R3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0464 (Fisher's exact test), Q value = 0.15

Table S5168. Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PPP2R3B MUTATED	5	0	9
PPP2R3B WILD-TYPE	101	54	88

Figure S1790. Get High-res Image Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PPP2R3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0051

Table S5169. Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PPP2R3B MUTATED	14	0	1
PPP2R3B WILD-TYPE	109	95	70

Figure S1791. Get High-res Image Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PPP2R3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00528 (Fisher's exact test), Q value = 0.046

Table S5170. Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PPP2R3B MUTATED	14	0	1
PPP2R3B WILD-TYPE	143	63	68

Figure S1792. Get High-res Image Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PPP2R3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.55

Table S5171. Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PPP2R3B MUTATED	1	1	4	3	1	0
PPP2R3B WILD-TYPE	32	18	55	36	15	45

'PPP2R3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.28

Table S5172. Gene #526: 'PPP2R3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PPP2R3B MUTATED	4	0	3	0	2	1
PPP2R3B WILD-TYPE	43	39	32	32	21	34

'SLC45A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.083

Table S5173. Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC45A4 MUTATED	1	14	0	1	1
SLC45A4 WILD-TYPE	78	112	27	42	11

Figure S1793. Get High-res Image Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC45A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0061

Table S5174. Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC45A4 MUTATED	0	12	1	2
SLC45A4 WILD-TYPE	71	64	33	61

Figure S1794. Get High-res Image Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC45A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.07

Table S5175. Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC45A4 MUTATED	1	6	7	0	2
SLC45A4 WILD-TYPE	15	56	44	65	53

Figure S1795. Get High-res Image Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SLC45A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00064 (Fisher's exact test), Q value = 0.014

Table S5176. Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC45A4 MUTATED	3	8	5	0
SLC45A4 WILD-TYPE	95	36	45	57

Figure S1796. Get High-res Image Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC45A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.1

Table S5177. Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC45A4 MUTATED	9	2	1	4	1
SLC45A4 WILD-TYPE	53	57	39	33	58

Figure S1797. Get High-res Image Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC45A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 0.086

Table S5178. Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC45A4 MUTATED	4	1	12
SLC45A4 WILD-TYPE	102	53	85

Figure S1798. Get High-res Image Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.12

Table S5179. Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC45A4 MUTATED	13	2	3
SLC45A4 WILD-TYPE	110	93	68

Figure S1799. Get High-res Image Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0424 (Fisher's exact test), Q value = 0.15

Table S5180. Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC45A4 MUTATED	15	2	1
SLC45A4 WILD-TYPE	142	61	68

Figure S1800. Get High-res Image Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0902 (Fisher's exact test), Q value = 0.22

Table S5181. Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC45A4 MUTATED	1	1	7	4	0	0
SLC45A4 WILD-TYPE	32	18	52	35	16	45

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0304 (Fisher's exact test), Q value = 0.12

Table S5182. Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC45A4 MUTATED	5	0	4	0	3	1
SLC45A4 WILD-TYPE	42	39	31	32	20	34

Figure S1801. Get High-res Image Gene #527: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA1609 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.13

Table S5183. Gene #528: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1609 MUTATED	0	4	0	1	2
KIAA1609 WILD-TYPE	79	122	27	42	10

Figure S1802. Get High-res Image Gene #528: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1609 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.49

Table S5184. Gene #528: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1609 MUTATED	0	3	1	1
KIAA1609 WILD-TYPE	71	73	33	62

'KIAA1609 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.28

Table S5185. Gene #528: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIAA1609 MUTATED	1	3	0	1	0
KIAA1609 WILD-TYPE	15	59	51	64	55

'KIAA1609 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.63

Table S5186. Gene #528: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIAA1609 MUTATED	2	2	0	1
KIAA1609 WILD-TYPE	96	42	50	56

'KIAA1609 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.33

Table S5187. Gene #528: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIAA1609 MUTATED	4	1	1	0	0
KIAA1609 WILD-TYPE	58	58	39	37	59

'KIAA1609 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.46

Table S5188. Gene #528: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIAA1609 MUTATED	1	1	4
KIAA1609 WILD-TYPE	105	53	93

'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.19

Table S5189. Gene #528: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIAA1609 MUTATED	6	1	0
KIAA1609 WILD-TYPE	117	94	71

'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S5190. Gene #528: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIAA1609 MUTATED	6	1	0
KIAA1609 WILD-TYPE	151	62	69

'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.68

Table S5191. Gene #528: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIAA1609 MUTATED	0	0	2	2	0	0
KIAA1609 WILD-TYPE	33	19	57	37	16	45

'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.6

Table S5192. Gene #528: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIAA1609 MUTATED	2	0	1	0	1	0
KIAA1609 WILD-TYPE	45	39	34	32	22	35

'ZMYM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.34

Table S5193. Gene #529: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZMYM5 MUTATED	0	5	2	1	0
ZMYM5 WILD-TYPE	79	121	25	42	12

'ZMYM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.34

Table S5194. Gene #529: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZMYM5 MUTATED	0	4	1	1
ZMYM5 WILD-TYPE	71	72	33	62

'ZMYM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.083

Table S5195. Gene #529: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZMYM5 MUTATED	2	3	3	0	0
ZMYM5 WILD-TYPE	14	59	48	65	55

Figure S1803. Get High-res Image Gene #529: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZMYM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0564 (Fisher's exact test), Q value = 0.17

Table S5196. Gene #529: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZMYM5 MUTATED	2	4	2	0
ZMYM5 WILD-TYPE	96	40	48	57

'ZMYM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 0.19

Table S5197. Gene #529: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZMYM5 MUTATED	4	0	2	1	0
ZMYM5 WILD-TYPE	58	59	38	36	59

'ZMYM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.71

Table S5198. Gene #529: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZMYM5 MUTATED	2	1	4
ZMYM5 WILD-TYPE	104	53	93

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S5199. Gene #529: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZMYM5 MUTATED	6	2	0
ZMYM5 WILD-TYPE	117	93	71

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.31

Table S5200. Gene #529: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZMYM5 MUTATED	7	1	0
ZMYM5 WILD-TYPE	150	62	69

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 0.87

Table S5201. Gene #529: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZMYM5 MUTATED	0	0	3	2	0	1
ZMYM5 WILD-TYPE	33	19	56	37	16	44

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.44

Table S5202. Gene #529: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZMYM5 MUTATED	1	1	3	0	1	0
ZMYM5 WILD-TYPE	46	38	32	32	22	35

'MCM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 0.17

Table S5203. Gene #530: 'MCM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MCM4 MUTATED	0	9	1	1	1
MCM4 WILD-TYPE	79	117	26	42	11

'MCM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S5204. Gene #530: 'MCM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MCM4 MUTATED	1	4	1	0
MCM4 WILD-TYPE	70	72	33	63

'MCM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.72

Table S5205. Gene #530: 'MCM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MCM4 MUTATED	1	3	3	1	3
MCM4 WILD-TYPE	15	59	48	64	52

'MCM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.075

Table S5206. Gene #530: 'MCM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MCM4 MUTATED	4	6	0	1
MCM4 WILD-TYPE	94	38	50	56

Figure S1804. Get High-res Image Gene #530: 'MCM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MCM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 0.2

Table S5207. Gene #530: 'MCM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MCM4 MUTATED	3	2	3	4	0
MCM4 WILD-TYPE	59	57	37	33	59

'MCM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00413 (Fisher's exact test), Q value = 0.04

Table S5208. Gene #530: 'MCM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MCM4 MUTATED	2	0	10
MCM4 WILD-TYPE	104	54	87

Figure S1805. Get High-res Image Gene #530: 'MCM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MCM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00263 (Fisher's exact test), Q value = 0.032

Table S5209. Gene #530: 'MCM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MCM4 MUTATED	11	1	0
MCM4 WILD-TYPE	112	94	71

Figure S1806. Get High-res Image Gene #530: 'MCM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MCM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.1

Table S5210. Gene #530: 'MCM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MCM4 MUTATED	11	1	0
MCM4 WILD-TYPE	146	62	69

Figure S1807. Get High-res Image Gene #530: 'MCM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MCM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.72

Table S5211. Gene #530: 'MCM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MCM4 MUTATED	1	1	3	1	0	0
MCM4 WILD-TYPE	32	18	56	38	16	45

'MCM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.37

Table S5212. Gene #530: 'MCM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MCM4 MUTATED	2	0	3	1	0	0
MCM4 WILD-TYPE	45	39	32	31	23	35

'NBN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.39

Table S5213. Gene #531: 'NBN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NBN MUTATED	1	9	2	1	0
NBN WILD-TYPE	78	117	25	42	12

'NBN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.34

Table S5214. Gene #531: 'NBN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NBN MUTATED	3	5	1	0
NBN WILD-TYPE	68	71	33	63

'NBN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 0.96

Table S5215. Gene #531: 'NBN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NBN MUTATED	0	3	3	2	3
NBN WILD-TYPE	16	59	48	63	52

'NBN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.58

Table S5216. Gene #531: 'NBN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NBN MUTATED	4	4	1	2
NBN WILD-TYPE	94	40	49	55

'NBN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.79

Table S5217. Gene #531: 'NBN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NBN MUTATED	3	3	3	2	1
NBN WILD-TYPE	59	56	37	35	58

'NBN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.49

Table S5218. Gene #531: 'NBN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NBN MUTATED	3	2	7
NBN WILD-TYPE	103	52	90

'NBN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.57

Table S5219. Gene #531: 'NBN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NBN MUTATED	8	3	2
NBN WILD-TYPE	115	92	69

'NBN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.864 (Fisher's exact test), Q value = 0.91

Table S5220. Gene #531: 'NBN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NBN MUTATED	8	3	2
NBN WILD-TYPE	149	60	67

'NBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.31

Table S5221. Gene #531: 'NBN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NBN MUTATED	1	3	1	2	1	1
NBN WILD-TYPE	32	16	58	37	15	44

'NBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.77

Table S5222. Gene #531: 'NBN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NBN MUTATED	4	1	1	2	0	1
NBN WILD-TYPE	43	38	34	30	23	34

'C19ORF26 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.2

Table S5223. Gene #532: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C19ORF26 MUTATED	0	6	0	0	1
C19ORF26 WILD-TYPE	79	120	27	43	11

'C19ORF26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.45

Table S5224. Gene #532: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C19ORF26 MUTATED	0	3	0	2
C19ORF26 WILD-TYPE	71	73	34	61

'C19ORF26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 0.78

Table S5225. Gene #532: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C19ORF26 MUTATED	1	1	2	2	1
C19ORF26 WILD-TYPE	15	61	49	63	54

'C19ORF26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.067 (Fisher's exact test), Q value = 0.19

Table S5226. Gene #532: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C19ORF26 MUTATED	2	4	0	1
C19ORF26 WILD-TYPE	96	40	50	56

'C19ORF26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S5227. Gene #532: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C19ORF26 MUTATED	4	1	0	2	0
C19ORF26 WILD-TYPE	58	58	40	35	59

'C19ORF26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.71

Table S5228. Gene #532: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C19ORF26 MUTATED	2	1	4
C19ORF26 WILD-TYPE	104	53	93

'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.52

Table S5229. Gene #532: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C19ORF26 MUTATED	5	1	1
C19ORF26 WILD-TYPE	118	94	70

'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.5

Table S5230. Gene #532: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C19ORF26 MUTATED	6	0	1
C19ORF26 WILD-TYPE	151	63	68

'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.13

Table S5231. Gene #532: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C19ORF26 MUTATED	0	0	3	0	2	0
C19ORF26 WILD-TYPE	33	19	56	39	14	45

Figure S1808. Get High-res Image Gene #532: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.67

Table S5232. Gene #532: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C19ORF26 MUTATED	1	0	2	0	1	1
C19ORF26 WILD-TYPE	46	39	33	32	22	34

'NARG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.19

Table S5233. Gene #533: 'NARG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NARG2 MUTATED	0	9	0	2	0
NARG2 WILD-TYPE	79	117	27	41	12

'NARG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 0.2

Table S5234. Gene #533: 'NARG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NARG2 MUTATED	1	7	0	2
NARG2 WILD-TYPE	70	69	34	61

'NARG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S5235. Gene #533: 'NARG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NARG2 MUTATED	1	5	3	0	2
NARG2 WILD-TYPE	15	57	48	65	53

'NARG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00447 (Fisher's exact test), Q value = 0.042

Table S5236. Gene #533: 'NARG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NARG2 MUTATED	2	6	3	0
NARG2 WILD-TYPE	96	38	47	57

Figure S1809. Get High-res Image Gene #533: 'NARG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NARG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.15

Table S5237. Gene #533: 'NARG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NARG2 MUTATED	6	1	1	1	0
NARG2 WILD-TYPE	56	58	39	36	59

Figure S1810. Get High-res Image Gene #533: 'NARG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NARG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.15

Table S5238. Gene #533: 'NARG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NARG2 MUTATED	2	0	7
NARG2 WILD-TYPE	104	54	90

Figure S1811. Get High-res Image Gene #533: 'NARG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NARG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S5239. Gene #533: 'NARG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NARG2 MUTATED	8	2	1
NARG2 WILD-TYPE	115	93	70

'NARG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.14

Table S5240. Gene #533: 'NARG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NARG2 MUTATED	10	1	0
NARG2 WILD-TYPE	147	62	69

Figure S1812. Get High-res Image Gene #533: 'NARG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NARG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.75

Table S5241. Gene #533: 'NARG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NARG2 MUTATED	1	2	2	2	0	1
NARG2 WILD-TYPE	32	17	57	37	16	44

'NARG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0645 (Fisher's exact test), Q value = 0.18

Table S5242. Gene #533: 'NARG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NARG2 MUTATED	4	0	2	0	2	0
NARG2 WILD-TYPE	43	39	33	32	21	35

'MMEL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S5243. Gene #534: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MMEL1 MUTATED	0	4	1	0	1
MMEL1 WILD-TYPE	79	122	26	43	11

'MMEL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.29

Table S5244. Gene #534: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MMEL1 MUTATED	0	3	0	0
MMEL1 WILD-TYPE	71	73	34	63

'MMEL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.15

Table S5245. Gene #534: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MMEL1 MUTATED	1	4	0	0	1
MMEL1 WILD-TYPE	15	58	51	65	54

Figure S1813. Get High-res Image Gene #534: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MMEL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.1

Table S5246. Gene #534: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MMEL1 MUTATED	1	4	1	0
MMEL1 WILD-TYPE	97	40	49	57

Figure S1814. Get High-res Image Gene #534: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MMEL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.49

Table S5247. Gene #534: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MMEL1 MUTATED	2	0	1	1	0
MMEL1 WILD-TYPE	60	59	39	36	59

'MMEL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0503 (Fisher's exact test), Q value = 0.16

Table S5248. Gene #534: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MMEL1 MUTATED	0	0	4
MMEL1 WILD-TYPE	106	54	93

'MMEL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 0.23

Table S5249. Gene #534: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MMEL1 MUTATED	5	0	1
MMEL1 WILD-TYPE	118	95	70

'MMEL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S5250. Gene #534: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MMEL1 MUTATED	6	0	0
MMEL1 WILD-TYPE	151	63	69

'DYX1C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.33

Table S5251. Gene #535: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DYX1C1 MUTATED	1	7	1	0	1
DYX1C1 WILD-TYPE	78	119	26	43	11

'DYX1C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S5252. Gene #535: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DYX1C1 MUTATED	1	6	0	1
DYX1C1 WILD-TYPE	70	70	34	62

'DYX1C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.47

Table S5253. Gene #535: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DYX1C1 MUTATED	0	3	3	0	2
DYX1C1 WILD-TYPE	16	59	48	65	53

'DYX1C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.091

Table S5254. Gene #535: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DYX1C1 MUTATED	1	5	1	1
DYX1C1 WILD-TYPE	97	39	49	56

Figure S1815. Get High-res Image Gene #535: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DYX1C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.62

Table S5255. Gene #535: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DYX1C1 MUTATED	4	3	1	0	1
DYX1C1 WILD-TYPE	58	56	39	37	58

'DYX1C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.27

Table S5256. Gene #535: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DYX1C1 MUTATED	1	3	5
DYX1C1 WILD-TYPE	105	51	92

'DYX1C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.63

Table S5257. Gene #535: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DYX1C1 MUTATED	6	3	1
DYX1C1 WILD-TYPE	117	92	70

'DYX1C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 0.68

Table S5258. Gene #535: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DYX1C1 MUTATED	6	3	1
DYX1C1 WILD-TYPE	151	60	68

'DYX1C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.76

Table S5259. Gene #535: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DYX1C1 MUTATED	2	1	3	0	0	2
DYX1C1 WILD-TYPE	31	18	56	39	16	43

'DYX1C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 0.89

Table S5260. Gene #535: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DYX1C1 MUTATED	2	2	2	1	1	0
DYX1C1 WILD-TYPE	45	37	33	31	22	35

'ABCA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.86

Table S5261. Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ABCA5 MUTATED	4	11	1	2	0
ABCA5 WILD-TYPE	75	115	26	41	12

'ABCA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.26

Table S5262. Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ABCA5 MUTATED	2	9	1	3
ABCA5 WILD-TYPE	69	67	33	60

'ABCA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.56

Table S5263. Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ABCA5 MUTATED	2	4	5	2	3
ABCA5 WILD-TYPE	14	58	46	63	52

'ABCA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 0.098

Table S5264. Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ABCA5 MUTATED	7	7	1	1
ABCA5 WILD-TYPE	91	37	49	56

Figure S1816. Get High-res Image Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ABCA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00806 (Fisher's exact test), Q value = 0.059

Table S5265. Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ABCA5 MUTATED	6	1	0	6	2
ABCA5 WILD-TYPE	56	58	40	31	57

Figure S1817. Get High-res Image Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ABCA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 0.098

Table S5266. Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ABCA5 MUTATED	3	1	11
ABCA5 WILD-TYPE	103	53	86

Figure S1818. Get High-res Image Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00354 (Fisher's exact test), Q value = 0.037

Table S5267. Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ABCA5 MUTATED	14	1	3
ABCA5 WILD-TYPE	109	94	68

Figure S1819. Get High-res Image Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 0.15

Table S5268. Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ABCA5 MUTATED	15	1	2
ABCA5 WILD-TYPE	142	62	67

Figure S1820. Get High-res Image Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00317 (Fisher's exact test), Q value = 0.035

Table S5269. Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ABCA5 MUTATED	4	4	4	0	0	0
ABCA5 WILD-TYPE	29	15	55	39	16	45

Figure S1821. Get High-res Image Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.59

Table S5270. Gene #536: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ABCA5 MUTATED	5	1	3	2	0	1
ABCA5 WILD-TYPE	42	38	32	30	23	34

'NOB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.32

Table S5271. Gene #537: 'NOB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NOB1 MUTATED	0	5	0	1	1
NOB1 WILD-TYPE	79	121	27	42	11

'NOB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0972 (Fisher's exact test), Q value = 0.23

Table S5272. Gene #537: 'NOB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NOB1 MUTATED	0	3	1	0
NOB1 WILD-TYPE	71	73	33	63

'NOB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S5273. Gene #537: 'NOB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NOB1 MUTATED	0	1	0	0	3
NOB1 WILD-TYPE	16	61	51	65	52

'NOB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.69

Table S5274. Gene #537: 'NOB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NOB1 MUTATED	3	0	1	0
NOB1 WILD-TYPE	95	44	49	57

'NOB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.27

Table S5275. Gene #537: 'NOB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NOB1 MUTATED	4	1	2	0	0
NOB1 WILD-TYPE	58	58	38	37	59

'NOB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.27

Table S5276. Gene #537: 'NOB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NOB1 MUTATED	2	0	5
NOB1 WILD-TYPE	104	54	92

'NOB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.16

Table S5277. Gene #537: 'NOB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NOB1 MUTATED	6	0	1
NOB1 WILD-TYPE	117	95	70

'NOB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.5

Table S5278. Gene #537: 'NOB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NOB1 MUTATED	6	0	1
NOB1 WILD-TYPE	151	63	68

'NOB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0359 (Fisher's exact test), Q value = 0.13

Table S5279. Gene #537: 'NOB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NOB1 MUTATED	0	1	0	3	0	0
NOB1 WILD-TYPE	33	18	59	36	16	45

Figure S1822. Get High-res Image Gene #537: 'NOB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NOB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S5280. Gene #537: 'NOB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NOB1 MUTATED	2	0	0	2	0	0
NOB1 WILD-TYPE	45	39	35	30	23	35

'ELL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.27

Table S5281. Gene #538: 'ELL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ELL2 MUTATED	2	10	0	0	0
ELL2 WILD-TYPE	77	116	27	43	12

'ELL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.3

Table S5282. Gene #538: 'ELL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ELL2 MUTATED	1	6	0	2
ELL2 WILD-TYPE	70	70	34	61

'ELL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0978 (Fisher's exact test), Q value = 0.23

Table S5283. Gene #538: 'ELL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ELL2 MUTATED	1	4	2	0	5
ELL2 WILD-TYPE	15	58	49	65	50

'ELL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S5284. Gene #538: 'ELL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ELL2 MUTATED	5	4	3	0
ELL2 WILD-TYPE	93	40	47	57

'ELL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.13

Table S5285. Gene #538: 'ELL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ELL2 MUTATED	5	1	4	1	0
ELL2 WILD-TYPE	57	58	36	36	59

Figure S1823. Get High-res Image Gene #538: 'ELL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ELL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.61

Table S5286. Gene #538: 'ELL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ELL2 MUTATED	4	1	6
ELL2 WILD-TYPE	102	53	91

'ELL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 0.18

Table S5287. Gene #538: 'ELL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ELL2 MUTATED	9	1	2
ELL2 WILD-TYPE	114	94	69

'ELL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.52

Table S5288. Gene #538: 'ELL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ELL2 MUTATED	9	2	1
ELL2 WILD-TYPE	148	61	68

'ELL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 0.87

Table S5289. Gene #538: 'ELL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ELL2 MUTATED	2	0	4	2	0	1
ELL2 WILD-TYPE	31	19	55	37	16	44

'ELL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.36

Table S5290. Gene #538: 'ELL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ELL2 MUTATED	3	1	4	1	0	0
ELL2 WILD-TYPE	44	38	31	31	23	35

'MUT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.24

Table S5291. Gene #539: 'MUT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MUT MUTATED	0	5	0	0	1
MUT WILD-TYPE	79	121	27	43	11

'MUT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.17

Table S5292. Gene #539: 'MUT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MUT MUTATED	0	4	1	0
MUT WILD-TYPE	71	72	33	63

'MUT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.69

Table S5293. Gene #539: 'MUT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MUT MUTATED	0	1	1	0	2
MUT WILD-TYPE	16	61	50	65	53

'MUT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.078

Table S5294. Gene #539: 'MUT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MUT MUTATED	0	3	0	1
MUT WILD-TYPE	98	41	50	56

Figure S1824. Get High-res Image Gene #539: 'MUT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MUT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.065 (Fisher's exact test), Q value = 0.18

Table S5295. Gene #539: 'MUT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MUT MUTATED	4	0	1	1	0
MUT WILD-TYPE	58	59	39	36	59

'MUT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S5296. Gene #539: 'MUT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MUT MUTATED	1	0	5
MUT WILD-TYPE	105	54	92

'MUT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.084

Table S5297. Gene #539: 'MUT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MUT MUTATED	6	0	0
MUT WILD-TYPE	117	95	71

Figure S1825. Get High-res Image Gene #539: 'MUT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MUT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S5298. Gene #539: 'MUT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MUT MUTATED	6	0	0
MUT WILD-TYPE	151	63	69

'MUT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.75

Table S5299. Gene #539: 'MUT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MUT MUTATED	1	1	1	1	0	0
MUT WILD-TYPE	32	18	58	38	16	45

'MUT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.26

Table S5300. Gene #539: 'MUT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MUT MUTATED	1	0	0	1	2	0
MUT WILD-TYPE	46	39	35	31	21	35

'NT5DC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.37

Table S5301. Gene #540: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NT5DC1 MUTATED	0	5	1	0	0
NT5DC1 WILD-TYPE	79	121	26	43	12

'NT5DC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.097

Table S5302. Gene #540: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NT5DC1 MUTATED	0	5	1	0
NT5DC1 WILD-TYPE	71	71	33	63

Figure S1826. Get High-res Image Gene #540: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NT5DC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.61

Table S5303. Gene #540: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NT5DC1 MUTATED	0	1	2	0	2
NT5DC1 WILD-TYPE	16	61	49	65	53

'NT5DC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0195 (Fisher's exact test), Q value = 0.094

Table S5304. Gene #540: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NT5DC1 MUTATED	0	3	0	2
NT5DC1 WILD-TYPE	98	41	50	55

Figure S1827. Get High-res Image Gene #540: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NT5DC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.3

Table S5305. Gene #540: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NT5DC1 MUTATED	4	1	0	1	0
NT5DC1 WILD-TYPE	58	58	40	36	59

'NT5DC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.46

Table S5306. Gene #540: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NT5DC1 MUTATED	1	1	4
NT5DC1 WILD-TYPE	105	53	93

'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S5307. Gene #540: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NT5DC1 MUTATED	4	0	2
NT5DC1 WILD-TYPE	119	95	69

'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.61

Table S5308. Gene #540: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NT5DC1 MUTATED	5	0	1
NT5DC1 WILD-TYPE	152	63	68

'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.31

Table S5309. Gene #540: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NT5DC1 MUTATED	0	2	2	2	0	0
NT5DC1 WILD-TYPE	33	17	57	37	16	45

'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.59

Table S5310. Gene #540: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NT5DC1 MUTATED	3	0	1	1	1	0
NT5DC1 WILD-TYPE	44	39	34	31	22	35

'FBN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 0.13

Table S5311. Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FBN3 MUTATED	2	17	4	3	2
FBN3 WILD-TYPE	77	109	23	40	10

Figure S1828. Get High-res Image Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.081

Table S5312. Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FBN3 MUTATED	3	13	3	2
FBN3 WILD-TYPE	68	63	31	61

Figure S1829. Get High-res Image Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FBN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 0.86

Table S5313. Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FBN3 MUTATED	2	7	5	4	6
FBN3 WILD-TYPE	14	55	46	61	49

'FBN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00135 (Fisher's exact test), Q value = 0.021

Table S5314. Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FBN3 MUTATED	6	12	3	3
FBN3 WILD-TYPE	92	32	47	54

Figure S1830. Get High-res Image Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FBN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0046

Table S5315. Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FBN3 MUTATED	13	2	1	9	2
FBN3 WILD-TYPE	49	57	39	28	57

Figure S1831. Get High-res Image Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FBN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00093 (Fisher's exact test), Q value = 0.018

Table S5316. Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FBN3 MUTATED	4	4	19
FBN3 WILD-TYPE	102	50	78

Figure S1832. Get High-res Image Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0084

Table S5317. Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FBN3 MUTATED	22	4	2
FBN3 WILD-TYPE	101	91	69

Figure S1833. Get High-res Image Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0021 (Fisher's exact test), Q value = 0.028

Table S5318. Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FBN3 MUTATED	24	2	2
FBN3 WILD-TYPE	133	61	67

Figure S1834. Get High-res Image Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.3

Table S5319. Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FBN3 MUTATED	5	1	6	6	0	1
FBN3 WILD-TYPE	28	18	53	33	16	44

'FBN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 0.11

Table S5320. Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FBN3 MUTATED	7	1	5	2	4	0
FBN3 WILD-TYPE	40	38	30	30	19	35

Figure S1835. Get High-res Image Gene #541: 'FBN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ENOSF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.61

Table S5321. Gene #542: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ENOSF1 MUTATED	1	6	0	0	0
ENOSF1 WILD-TYPE	78	120	27	43	12

'ENOSF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.55

Table S5322. Gene #542: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ENOSF1 MUTATED	1	4	0	1
ENOSF1 WILD-TYPE	70	72	34	62

'ENOSF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.49

Table S5323. Gene #542: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ENOSF1 MUTATED	1	2	2	0	2
ENOSF1 WILD-TYPE	15	60	49	65	53

'ENOSF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.13

Table S5324. Gene #542: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ENOSF1 MUTATED	1	4	0	2
ENOSF1 WILD-TYPE	97	40	50	55

Figure S1836. Get High-res Image Gene #542: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ENOSF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.7

Table S5325. Gene #542: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ENOSF1 MUTATED	3	1	0	0	1
ENOSF1 WILD-TYPE	59	58	40	37	58

'ENOSF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5326. Gene #542: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ENOSF1 MUTATED	2	1	2
ENOSF1 WILD-TYPE	104	53	95

'ENOSF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.52

Table S5327. Gene #542: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ENOSF1 MUTATED	5	1	1
ENOSF1 WILD-TYPE	118	94	70

'ENOSF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.63

Table S5328. Gene #542: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ENOSF1 MUTATED	5	0	2
ENOSF1 WILD-TYPE	152	63	67

'ENOSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S5329. Gene #542: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ENOSF1 MUTATED	1	1	2	0	0	1
ENOSF1 WILD-TYPE	32	18	57	39	16	44

'ENOSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.77

Table S5330. Gene #542: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ENOSF1 MUTATED	1	0	1	2	0	1
ENOSF1 WILD-TYPE	46	39	34	30	23	34

'ZBTB49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 0.85

Table S5331. Gene #543: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZBTB49 MUTATED	1	5	0	1	0
ZBTB49 WILD-TYPE	78	121	27	42	12

'ZBTB49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.61

Table S5332. Gene #543: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZBTB49 MUTATED	1	4	0	2
ZBTB49 WILD-TYPE	70	72	34	61

'ZBTB49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.52

Table S5333. Gene #543: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZBTB49 MUTATED	0	2	1	0	3
ZBTB49 WILD-TYPE	16	60	50	65	52

'ZBTB49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.7

Table S5334. Gene #543: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZBTB49 MUTATED	1	1	2	2
ZBTB49 WILD-TYPE	97	43	48	55

'ZBTB49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S5335. Gene #543: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZBTB49 MUTATED	4	0	0	1	2
ZBTB49 WILD-TYPE	58	59	40	36	57

'ZBTB49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.27

Table S5336. Gene #543: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZBTB49 MUTATED	2	0	5
ZBTB49 WILD-TYPE	104	54	92

'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.86

Table S5337. Gene #543: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZBTB49 MUTATED	4	2	1
ZBTB49 WILD-TYPE	119	93	70

'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.63

Table S5338. Gene #543: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZBTB49 MUTATED	5	0	2
ZBTB49 WILD-TYPE	152	63	67

'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 0.94

Table S5339. Gene #543: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZBTB49 MUTATED	1	1	2	1	1	1
ZBTB49 WILD-TYPE	32	18	57	38	15	44

'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.35

Table S5340. Gene #543: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZBTB49 MUTATED	4	0	1	0	0	2
ZBTB49 WILD-TYPE	43	39	34	32	23	33

'SLC22A16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.11

Table S5341. Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC22A16 MUTATED	0	10	1	0	0
SLC22A16 WILD-TYPE	79	116	26	43	12

Figure S1837. Get High-res Image Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC22A16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.08

Table S5342. Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC22A16 MUTATED	0	7	1	1
SLC22A16 WILD-TYPE	71	69	33	62

Figure S1838. Get High-res Image Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC22A16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0877 (Fisher's exact test), Q value = 0.22

Table S5343. Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC22A16 MUTATED	0	5	3	0	1
SLC22A16 WILD-TYPE	16	57	48	65	54

'SLC22A16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00439 (Fisher's exact test), Q value = 0.042

Table S5344. Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC22A16 MUTATED	1	5	3	0
SLC22A16 WILD-TYPE	97	39	47	57

Figure S1839. Get High-res Image Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC22A16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.09

Table S5345. Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC22A16 MUTATED	7	1	1	1	0
SLC22A16 WILD-TYPE	55	58	39	36	59

Figure S1840. Get High-res Image Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC22A16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.19

Table S5346. Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC22A16 MUTATED	3	0	7
SLC22A16 WILD-TYPE	103	54	90

'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.13

Table S5347. Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC22A16 MUTATED	9	1	1
SLC22A16 WILD-TYPE	114	94	70

Figure S1841. Get High-res Image Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.15

Table S5348. Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC22A16 MUTATED	10	0	1
SLC22A16 WILD-TYPE	147	63	68

Figure S1842. Get High-res Image Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S5349. Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC22A16 MUTATED	0	2	3	3	0	0
SLC22A16 WILD-TYPE	33	17	56	36	16	45

'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.43

Table S5350. Gene #544: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC22A16 MUTATED	4	0	2	0	1	1
SLC22A16 WILD-TYPE	43	39	33	32	22	34

'KCNC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S5351. Gene #545: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KCNC1 MUTATED	0	6	0	0	0
KCNC1 WILD-TYPE	79	120	27	43	12

'KCNC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00839 (Fisher's exact test), Q value = 0.061

Table S5352. Gene #545: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KCNC1 MUTATED	0	6	1	0
KCNC1 WILD-TYPE	71	70	33	63

Figure S1843. Get High-res Image Gene #545: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.32

Table S5353. Gene #545: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KCNC1 MUTATED	0	3	2	0	0
KCNC1 WILD-TYPE	16	59	49	65	55

'KCNC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00979 (Fisher's exact test), Q value = 0.065

Table S5354. Gene #545: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KCNC1 MUTATED	0	3	2	0
KCNC1 WILD-TYPE	98	41	48	57

Figure S1844. Get High-res Image Gene #545: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.066

Table S5355. Gene #545: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KCNC1 MUTATED	5	0	0	1	0
KCNC1 WILD-TYPE	57	59	40	36	59

Figure S1845. Get High-res Image Gene #545: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KCNC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00457 (Fisher's exact test), Q value = 0.042

Table S5356. Gene #545: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KCNC1 MUTATED	0	0	6
KCNC1 WILD-TYPE	106	54	91

Figure S1846. Get High-res Image Gene #545: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.19

Table S5357. Gene #545: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KCNC1 MUTATED	6	1	0
KCNC1 WILD-TYPE	117	94	71

'KCNC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S5358. Gene #545: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KCNC1 MUTATED	6	1	0
KCNC1 WILD-TYPE	151	62	69

'KCNC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.66

Table S5359. Gene #545: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KCNC1 MUTATED	2	0	2	2	0	0
KCNC1 WILD-TYPE	31	19	57	37	16	45

'KCNC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.36

Table S5360. Gene #545: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KCNC1 MUTATED	3	0	2	0	1	0
KCNC1 WILD-TYPE	44	39	33	32	22	35

'MZF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.14

Table S5361. Gene #546: 'MZF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MZF1 MUTATED	0	9	1	0	0
MZF1 WILD-TYPE	79	117	26	43	12

Figure S1847. Get High-res Image Gene #546: 'MZF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MZF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.44

Table S5362. Gene #546: 'MZF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MZF1 MUTATED	2	6	1	1
MZF1 WILD-TYPE	69	70	33	62

'MZF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.12

Table S5363. Gene #546: 'MZF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MZF1 MUTATED	2	2	4	0	1
MZF1 WILD-TYPE	14	60	47	65	54

Figure S1848. Get High-res Image Gene #546: 'MZF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MZF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.63

Table S5364. Gene #546: 'MZF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MZF1 MUTATED	2	3	2	2
MZF1 WILD-TYPE	96	41	48	55

'MZF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 0.83

Table S5365. Gene #546: 'MZF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MZF1 MUTATED	3	1	2	1	1
MZF1 WILD-TYPE	59	58	38	36	58

'MZF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.56

Table S5366. Gene #546: 'MZF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MZF1 MUTATED	2	1	5
MZF1 WILD-TYPE	104	53	92

'MZF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S5367. Gene #546: 'MZF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MZF1 MUTATED	7	1	2
MZF1 WILD-TYPE	116	94	69

'MZF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.77

Table S5368. Gene #546: 'MZF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MZF1 MUTATED	7	1	2
MZF1 WILD-TYPE	150	62	67

'MZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 0.15

Table S5369. Gene #546: 'MZF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MZF1 MUTATED	0	2	6	1	1	0
MZF1 WILD-TYPE	33	17	53	38	15	45

Figure S1849. Get High-res Image Gene #546: 'MZF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.46

Table S5370. Gene #546: 'MZF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MZF1 MUTATED	2	0	4	2	1	1
MZF1 WILD-TYPE	45	39	31	30	22	34

'MGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0018 (Fisher's exact test), Q value = 0.026

Table S5371. Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MGA MUTATED	0	16	4	2	1
MGA WILD-TYPE	79	110	23	41	11

Figure S1850. Get High-res Image Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S5372. Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MGA MUTATED	0	11	6	2
MGA WILD-TYPE	71	65	28	61

Figure S1851. Get High-res Image Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00289 (Fisher's exact test), Q value = 0.033

Table S5373. Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MGA MUTATED	2	11	5	0	4
MGA WILD-TYPE	14	51	46	65	51

Figure S1852. Get High-res Image Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.013

Table S5374. Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MGA MUTATED	6	9	7	0
MGA WILD-TYPE	92	35	43	57

Figure S1853. Get High-res Image Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S5375. Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MGA MUTATED	15	0	1	4	0
MGA WILD-TYPE	47	59	39	33	59

Figure S1854. Get High-res Image Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00565 (Fisher's exact test), Q value = 0.048

Table S5376. Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MGA MUTATED	7	0	13
MGA WILD-TYPE	99	54	84

Figure S1855. Get High-res Image Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S5377. Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MGA MUTATED	22	1	1
MGA WILD-TYPE	101	94	70

Figure S1856. Get High-res Image Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029

Table S5378. Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MGA MUTATED	23	1	0
MGA WILD-TYPE	134	62	69

Figure S1857. Get High-res Image Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.3

Table S5379. Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MGA MUTATED	2	2	9	2	0	1
MGA WILD-TYPE	31	17	50	37	16	44

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0444 (Fisher's exact test), Q value = 0.15

Table S5380. Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MGA MUTATED	6	1	6	2	1	0
MGA WILD-TYPE	41	38	29	30	22	35

Figure S1858. Get High-res Image Gene #547: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GTF3C4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0045 (Fisher's exact test), Q value = 0.042

Table S5381. Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GTF3C4 MUTATED	0	12	0	0	0
GTF3C4 WILD-TYPE	79	114	27	43	12

Figure S1859. Get High-res Image Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GTF3C4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00568 (Fisher's exact test), Q value = 0.048

Table S5382. Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GTF3C4 MUTATED	0	8	1	1
GTF3C4 WILD-TYPE	71	68	33	62

Figure S1860. Get High-res Image Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GTF3C4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.33

Table S5383. Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GTF3C4 MUTATED	0	6	3	1	1
GTF3C4 WILD-TYPE	16	56	48	64	54

'GTF3C4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0089 (Fisher's exact test), Q value = 0.062

Table S5384. Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GTF3C4 MUTATED	1	3	6	1
GTF3C4 WILD-TYPE	97	41	44	56

Figure S1861. Get High-res Image Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GTF3C4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.075

Table S5385. Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GTF3C4 MUTATED	7	2	0	1	0
GTF3C4 WILD-TYPE	55	57	40	36	59

Figure S1862. Get High-res Image Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GTF3C4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.29

Table S5386. Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GTF3C4 MUTATED	2	1	7
GTF3C4 WILD-TYPE	104	53	90

'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.14

Table S5387. Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GTF3C4 MUTATED	9	3	0
GTF3C4 WILD-TYPE	114	92	71

Figure S1863. Get High-res Image Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S5388. Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GTF3C4 MUTATED	9	3	0
GTF3C4 WILD-TYPE	148	60	69

'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.44

Table S5389. Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GTF3C4 MUTATED	2	0	5	2	0	0
GTF3C4 WILD-TYPE	31	19	54	37	16	45

'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.31

Table S5390. Gene #548: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GTF3C4 MUTATED	4	0	3	1	1	0
GTF3C4 WILD-TYPE	43	39	32	31	22	35

'GPATCH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 0.84

Table S5391. Gene #549: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPATCH4 MUTATED	3	4	1	0	0
GPATCH4 WILD-TYPE	76	122	26	43	12

'GPATCH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.4

Table S5392. Gene #549: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPATCH4 MUTATED	2	4	0	0
GPATCH4 WILD-TYPE	69	72	34	63

'GPATCH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.57

Table S5393. Gene #549: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GPATCH4 MUTATED	0	3	1	0	1
GPATCH4 WILD-TYPE	16	59	50	65	54

'GPATCH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0767 (Fisher's exact test), Q value = 0.2

Table S5394. Gene #549: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GPATCH4 MUTATED	1	3	1	0
GPATCH4 WILD-TYPE	97	41	49	57

'GPATCH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.3

Table S5395. Gene #549: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GPATCH4 MUTATED	4	0	0	1	3
GPATCH4 WILD-TYPE	58	59	40	36	56

'GPATCH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.52

Table S5396. Gene #549: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GPATCH4 MUTATED	4	0	4
GPATCH4 WILD-TYPE	102	54	93

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.059 (Fisher's exact test), Q value = 0.17

Table S5397. Gene #549: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GPATCH4 MUTATED	4	0	4
GPATCH4 WILD-TYPE	119	95	67

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.52

Table S5398. Gene #549: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GPATCH4 MUTATED	6	0	2
GPATCH4 WILD-TYPE	151	63	67

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.18

Table S5399. Gene #549: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GPATCH4 MUTATED	0	2	1	3	0	0
GPATCH4 WILD-TYPE	33	17	58	36	16	45

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0222 (Fisher's exact test), Q value = 0.1

Table S5400. Gene #549: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GPATCH4 MUTATED	5	0	0	1	0	0
GPATCH4 WILD-TYPE	42	39	35	31	23	35

Figure S1864. Get High-res Image Gene #549: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NOS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.68

Table S5401. Gene #550: 'NOS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NOS3 MUTATED	2	6	0	1	1
NOS3 WILD-TYPE	77	120	27	42	11

'NOS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.26

Table S5402. Gene #550: 'NOS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NOS3 MUTATED	0	5	1	2
NOS3 WILD-TYPE	71	71	33	61

'NOS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0679 (Fisher's exact test), Q value = 0.19

Table S5403. Gene #550: 'NOS3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NOS3 MUTATED	1	5	1	0	1
NOS3 WILD-TYPE	15	57	50	65	54

'NOS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.077

Table S5404. Gene #550: 'NOS3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NOS3 MUTATED	1	4	3	0
NOS3 WILD-TYPE	97	40	47	57

Figure S1865. Get High-res Image Gene #550: 'NOS3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NOS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00389 (Fisher's exact test), Q value = 0.039

Table S5405. Gene #550: 'NOS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NOS3 MUTATED	4	0	0	5	1
NOS3 WILD-TYPE	58	59	40	32	58

Figure S1866. Get High-res Image Gene #550: 'NOS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NOS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.1

Table S5406. Gene #550: 'NOS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NOS3 MUTATED	2	0	8
NOS3 WILD-TYPE	104	54	89

Figure S1867. Get High-res Image Gene #550: 'NOS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.088

Table S5407. Gene #550: 'NOS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NOS3 MUTATED	8	0	2
NOS3 WILD-TYPE	115	95	69

Figure S1868. Get High-res Image Gene #550: 'NOS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.49

Table S5408. Gene #550: 'NOS3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NOS3 MUTATED	8	1	1
NOS3 WILD-TYPE	149	62	68

'NOS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.64

Table S5409. Gene #550: 'NOS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NOS3 MUTATED	2	0	3	2	0	0
NOS3 WILD-TYPE	31	19	56	37	16	45

'NOS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 0.81

Table S5410. Gene #550: 'NOS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NOS3 MUTATED	3	0	1	1	1	1
NOS3 WILD-TYPE	44	39	34	31	22	34

'IK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.68

Table S5411. Gene #551: 'IK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IK MUTATED	1	5	0	0	0
IK WILD-TYPE	78	121	27	43	12

'IK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5412. Gene #551: 'IK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IK MUTATED	1	2	0	1
IK WILD-TYPE	70	74	34	62

'IK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.22

Table S5413. Gene #551: 'IK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IK MUTATED	0	3	3	0	0
IK WILD-TYPE	16	59	48	65	55

'IK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.35

Table S5414. Gene #551: 'IK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IK MUTATED	2	3	0	1
IK WILD-TYPE	96	41	50	56

'IK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5415. Gene #551: 'IK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IK MUTATED	2	1	1	1	1
IK WILD-TYPE	60	58	39	36	58

'IK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 0.92

Table S5416. Gene #551: 'IK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IK MUTATED	2	1	3
IK WILD-TYPE	104	53	94

'IK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.76

Table S5417. Gene #551: 'IK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IK MUTATED	3	1	2
IK WILD-TYPE	120	94	69

'IK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.34

Table S5418. Gene #551: 'IK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IK MUTATED	3	0	3
IK WILD-TYPE	154	63	66

'IK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.69

Table S5419. Gene #551: 'IK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IK MUTATED	0	1	1	1	0	0
IK WILD-TYPE	33	18	58	38	16	45

'IK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.72

Table S5420. Gene #551: 'IK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IK MUTATED	0	0	1	1	0	1
IK WILD-TYPE	47	39	34	31	23	34

'ELOVL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5421. Gene #552: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ELOVL2 MUTATED	2	4	0	1	0
ELOVL2 WILD-TYPE	77	122	27	42	12

'ELOVL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.46

Table S5422. Gene #552: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ELOVL2 MUTATED	2	2	2	0
ELOVL2 WILD-TYPE	69	74	32	63

'ELOVL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.39

Table S5423. Gene #552: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ELOVL2 MUTATED	0	1	3	0	2
ELOVL2 WILD-TYPE	16	61	48	65	53

'ELOVL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 0.1

Table S5424. Gene #552: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ELOVL2 MUTATED	1	4	0	1
ELOVL2 WILD-TYPE	97	40	50	56

Figure S1869. Get High-res Image Gene #552: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ELOVL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.52

Table S5425. Gene #552: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ELOVL2 MUTATED	3	0	1	0	2
ELOVL2 WILD-TYPE	59	59	39	37	57

'ELOVL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.57

Table S5426. Gene #552: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ELOVL2 MUTATED	4	0	2
ELOVL2 WILD-TYPE	102	54	95

'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.29

Table S5427. Gene #552: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ELOVL2 MUTATED	5	0	2
ELOVL2 WILD-TYPE	118	95	69

'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.63

Table S5428. Gene #552: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ELOVL2 MUTATED	5	0	2
ELOVL2 WILD-TYPE	152	63	67

'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.43

Table S5429. Gene #552: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ELOVL2 MUTATED	2	0	3	0	0	0
ELOVL2 WILD-TYPE	31	19	56	39	16	45

'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.49

Table S5430. Gene #552: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ELOVL2 MUTATED	0	0	1	1	1	2
ELOVL2 WILD-TYPE	47	39	34	31	22	33

'SMARCAL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.61

Table S5431. Gene #553: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SMARCAL1 MUTATED	2	8	0	3	0
SMARCAL1 WILD-TYPE	77	118	27	40	12

'SMARCAL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00695 (Fisher's exact test), Q value = 0.054

Table S5432. Gene #553: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SMARCAL1 MUTATED	2	8	0	0
SMARCAL1 WILD-TYPE	69	68	34	63

Figure S1870. Get High-res Image Gene #553: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMARCAL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 0.92

Table S5433. Gene #553: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SMARCAL1 MUTATED	1	2	2	2	3
SMARCAL1 WILD-TYPE	15	60	49	63	52

'SMARCAL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0739 (Fisher's exact test), Q value = 0.2

Table S5434. Gene #553: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SMARCAL1 MUTATED	2	5	1	2
SMARCAL1 WILD-TYPE	96	39	49	55

'SMARCAL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 0.97

Table S5435. Gene #553: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SMARCAL1 MUTATED	3	1	2	1	2
SMARCAL1 WILD-TYPE	59	58	38	36	57

'SMARCAL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S5436. Gene #553: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SMARCAL1 MUTATED	3	0	6
SMARCAL1 WILD-TYPE	103	54	91

'SMARCAL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.51

Table S5437. Gene #553: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SMARCAL1 MUTATED	8	2	3
SMARCAL1 WILD-TYPE	115	93	68

'SMARCAL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 0.66

Table S5438. Gene #553: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SMARCAL1 MUTATED	9	1	3
SMARCAL1 WILD-TYPE	148	62	66

'SMARCAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 0.95

Table S5439. Gene #553: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SMARCAL1 MUTATED	2	1	3	2	1	1
SMARCAL1 WILD-TYPE	31	18	56	37	15	44

'SMARCAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 0.82

Table S5440. Gene #553: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SMARCAL1 MUTATED	4	1	2	1	0	2
SMARCAL1 WILD-TYPE	43	38	33	31	23	33

'SLC38A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.59

Table S5441. Gene #554: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC38A6 MUTATED	1	6	1	0	0
SLC38A6 WILD-TYPE	78	120	26	43	12

'SLC38A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00608 (Fisher's exact test), Q value = 0.05

Table S5442. Gene #554: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC38A6 MUTATED	0	7	0	1
SLC38A6 WILD-TYPE	71	69	34	62

Figure S1871. Get High-res Image Gene #554: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC38A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.37

Table S5443. Gene #554: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC38A6 MUTATED	1	3	1	0	1
SLC38A6 WILD-TYPE	15	59	50	65	54

'SLC38A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0704 (Fisher's exact test), Q value = 0.19

Table S5444. Gene #554: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC38A6 MUTATED	1	3	2	0
SLC38A6 WILD-TYPE	97	41	48	57

'SLC38A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0592 (Fisher's exact test), Q value = 0.17

Table S5445. Gene #554: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC38A6 MUTATED	4	0	1	2	0
SLC38A6 WILD-TYPE	58	59	39	35	59

'SLC38A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 0.15

Table S5446. Gene #554: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC38A6 MUTATED	1	0	6
SLC38A6 WILD-TYPE	105	54	91

Figure S1872. Get High-res Image Gene #554: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.37

Table S5447. Gene #554: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC38A6 MUTATED	6	1	1
SLC38A6 WILD-TYPE	117	94	70

'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.31

Table S5448. Gene #554: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC38A6 MUTATED	7	1	0
SLC38A6 WILD-TYPE	150	62	69

'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.27

Table S5449. Gene #554: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC38A6 MUTATED	0	1	3	4	0	0
SLC38A6 WILD-TYPE	33	18	56	35	16	45

'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.4

Table S5450. Gene #554: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC38A6 MUTATED	3	0	3	1	1	0
SLC38A6 WILD-TYPE	44	39	32	31	22	35

'BCL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.47

Table S5451. Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BCL9 MUTATED	2	12	2	3	0
BCL9 WILD-TYPE	77	114	25	40	12

'BCL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.21

Table S5452. Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BCL9 MUTATED	2	9	1	2
BCL9 WILD-TYPE	69	67	33	61

'BCL9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.32

Table S5453. Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BCL9 MUTATED	2	6	2	1	3
BCL9 WILD-TYPE	14	56	49	64	52

'BCL9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00799 (Fisher's exact test), Q value = 0.059

Table S5454. Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BCL9 MUTATED	2	6	5	1
BCL9 WILD-TYPE	96	38	45	56

Figure S1873. Get High-res Image Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BCL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0027 (Fisher's exact test), Q value = 0.032

Table S5455. Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BCL9 MUTATED	11	1	2	4	1
BCL9 WILD-TYPE	51	58	38	33	58

Figure S1874. Get High-res Image Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BCL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.083

Table S5456. Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BCL9 MUTATED	5	1	13
BCL9 WILD-TYPE	101	53	84

Figure S1875. Get High-res Image Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BCL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00459 (Fisher's exact test), Q value = 0.043

Table S5457. Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BCL9 MUTATED	15	2	2
BCL9 WILD-TYPE	108	93	69

Figure S1876. Get High-res Image Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BCL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.034 (Fisher's exact test), Q value = 0.13

Table S5458. Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BCL9 MUTATED	16	1	2
BCL9 WILD-TYPE	141	62	67

Figure S1877. Get High-res Image Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BCL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.33

Table S5459. Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BCL9 MUTATED	2	2	5	4	0	0
BCL9 WILD-TYPE	31	17	54	35	16	45

'BCL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.4

Table S5460. Gene #555: 'BCL9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BCL9 MUTATED	4	0	4	2	2	1
BCL9 WILD-TYPE	43	39	31	30	21	34

'CLIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.72

Table S5461. Gene #556: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CLIP1 MUTATED	3	8	0	2	1
CLIP1 WILD-TYPE	76	118	27	41	11

'CLIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.13

Table S5462. Gene #556: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CLIP1 MUTATED	3	8	2	0
CLIP1 WILD-TYPE	68	68	32	63

Figure S1878. Get High-res Image Gene #556: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CLIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.6

Table S5463. Gene #556: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CLIP1 MUTATED	1	4	4	1	3
CLIP1 WILD-TYPE	15	58	47	64	52

'CLIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.081

Table S5464. Gene #556: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CLIP1 MUTATED	2	6	4	1
CLIP1 WILD-TYPE	96	38	46	56

Figure S1879. Get High-res Image Gene #556: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CLIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.35

Table S5465. Gene #556: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CLIP1 MUTATED	5	2	0	4	3
CLIP1 WILD-TYPE	57	57	40	33	56

'CLIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0508 (Fisher's exact test), Q value = 0.16

Table S5466. Gene #556: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CLIP1 MUTATED	2	3	9
CLIP1 WILD-TYPE	104	51	88

'CLIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.57

Table S5467. Gene #556: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CLIP1 MUTATED	9	3	3
CLIP1 WILD-TYPE	114	92	68

'CLIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.43

Table S5468. Gene #556: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CLIP1 MUTATED	11	1	3
CLIP1 WILD-TYPE	146	62	66

'CLIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 0.83

Table S5469. Gene #556: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CLIP1 MUTATED	3	0	3	3	0	2
CLIP1 WILD-TYPE	30	19	56	36	16	43

'CLIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.62

Table S5470. Gene #556: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CLIP1 MUTATED	4	2	1	2	2	0
CLIP1 WILD-TYPE	43	37	34	30	21	35

'AMPD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.09

Table S5471. Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AMPD3 MUTATED	1	13	4	1	0
AMPD3 WILD-TYPE	78	113	23	42	12

Figure S1880. Get High-res Image Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AMPD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0078

Table S5472. Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AMPD3 MUTATED	0	11	3	1
AMPD3 WILD-TYPE	71	65	31	62

Figure S1881. Get High-res Image Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AMPD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0982 (Fisher's exact test), Q value = 0.23

Table S5473. Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
AMPD3 MUTATED	1	6	7	1	3
AMPD3 WILD-TYPE	15	56	44	64	52

'AMPD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00134 (Fisher's exact test), Q value = 0.021

Table S5474. Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
AMPD3 MUTATED	4	10	2	2
AMPD3 WILD-TYPE	94	34	48	55

Figure S1882. Get High-res Image Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AMPD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.001 (Fisher's exact test), Q value = 0.018

Table S5475. Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
AMPD3 MUTATED	4	1	4	7	0
AMPD3 WILD-TYPE	58	58	36	30	59

Figure S1883. Get High-res Image Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AMPD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00818 (Fisher's exact test), Q value = 0.06

Table S5476. Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
AMPD3 MUTATED	3	1	12
AMPD3 WILD-TYPE	103	53	85

Figure S1884. Get High-res Image Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AMPD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00134 (Fisher's exact test), Q value = 0.021

Table S5477. Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
AMPD3 MUTATED	15	4	0
AMPD3 WILD-TYPE	108	91	71

Figure S1885. Get High-res Image Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AMPD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0277 (Fisher's exact test), Q value = 0.11

Table S5478. Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
AMPD3 MUTATED	16	2	1
AMPD3 WILD-TYPE	141	61	68

Figure S1886. Get High-res Image Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.52

Table S5479. Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
AMPD3 MUTATED	1	3	6	2	0	2
AMPD3 WILD-TYPE	32	16	53	37	16	43

'AMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.33

Table S5480. Gene #557: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
AMPD3 MUTATED	3	1	4	1	4	1
AMPD3 WILD-TYPE	44	38	31	31	19	34

'DMC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.81

Table S5481. Gene #558: 'DMC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DMC1 MUTATED	2	5	0	0	0
DMC1 WILD-TYPE	77	121	27	43	12

'DMC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.25

Table S5482. Gene #558: 'DMC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DMC1 MUTATED	0	4	2	1
DMC1 WILD-TYPE	71	72	32	62

'DMC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S5483. Gene #558: 'DMC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DMC1 MUTATED	2	2	1	1	1
DMC1 WILD-TYPE	14	60	50	64	54

'DMC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.78

Table S5484. Gene #558: 'DMC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DMC1 MUTATED	3	0	2	2
DMC1 WILD-TYPE	95	44	48	55

'DMC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 0.2

Table S5485. Gene #558: 'DMC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DMC1 MUTATED	5	2	0	1	0
DMC1 WILD-TYPE	57	57	40	36	59

'DMC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5486. Gene #558: 'DMC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DMC1 MUTATED	3	2	3
DMC1 WILD-TYPE	103	52	94

'DMC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.75

Table S5487. Gene #558: 'DMC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DMC1 MUTATED	5	2	1
DMC1 WILD-TYPE	118	93	70

'DMC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S5488. Gene #558: 'DMC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DMC1 MUTATED	7	1	0
DMC1 WILD-TYPE	150	62	69

'DMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.72

Table S5489. Gene #558: 'DMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DMC1 MUTATED	1	1	3	1	0	0
DMC1 WILD-TYPE	32	18	56	38	16	45

'DMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00324 (Fisher's exact test), Q value = 0.035

Table S5490. Gene #558: 'DMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DMC1 MUTATED	1	0	1	0	4	0
DMC1 WILD-TYPE	46	39	34	32	19	35

Figure S1887. Get High-res Image Gene #558: 'DMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'USP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.61

Table S5491. Gene #559: 'USP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
USP8 MUTATED	1	6	0	0	0
USP8 WILD-TYPE	78	120	27	43	12

'USP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 0.23

Table S5492. Gene #559: 'USP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
USP8 MUTATED	0	3	1	0
USP8 WILD-TYPE	71	73	33	63

'USP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.66

Table S5493. Gene #559: 'USP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
USP8 MUTATED	0	2	2	0	1
USP8 WILD-TYPE	16	60	49	65	54

'USP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00976 (Fisher's exact test), Q value = 0.065

Table S5494. Gene #559: 'USP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
USP8 MUTATED	0	3	2	0
USP8 WILD-TYPE	98	41	48	57

Figure S1888. Get High-res Image Gene #559: 'USP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'USP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 0.14

Table S5495. Gene #559: 'USP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
USP8 MUTATED	3	0	1	3	0
USP8 WILD-TYPE	59	59	39	34	59

Figure S1889. Get High-res Image Gene #559: 'USP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'USP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00142 (Fisher's exact test), Q value = 0.022

Table S5496. Gene #559: 'USP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
USP8 MUTATED	0	0	7
USP8 WILD-TYPE	106	54	90

Figure S1890. Get High-res Image Gene #559: 'USP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'USP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00759 (Fisher's exact test), Q value = 0.057

Table S5497. Gene #559: 'USP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
USP8 MUTATED	7	0	0
USP8 WILD-TYPE	116	95	71

Figure S1891. Get High-res Image Gene #559: 'USP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'USP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0706 (Fisher's exact test), Q value = 0.19

Table S5498. Gene #559: 'USP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
USP8 MUTATED	7	0	0
USP8 WILD-TYPE	150	63	69

'USP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.48

Table S5499. Gene #559: 'USP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
USP8 MUTATED	0	1	1	2	0	0
USP8 WILD-TYPE	33	18	58	37	16	45

'USP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.6

Table S5500. Gene #559: 'USP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
USP8 MUTATED	2	0	1	0	1	0
USP8 WILD-TYPE	45	39	34	32	22	35

'GPR114 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S5501. Gene #560: 'GPR114 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPR114 MUTATED	0	7	1	1	0
GPR114 WILD-TYPE	79	119	26	42	12

'GPR114 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.12

Table S5502. Gene #560: 'GPR114 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPR114 MUTATED	0	6	2	1
GPR114 WILD-TYPE	71	70	32	62

Figure S1892. Get High-res Image Gene #560: 'GPR114 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPR114 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.47

Table S5503. Gene #560: 'GPR114 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GPR114 MUTATED	0	3	3	0	2
GPR114 WILD-TYPE	16	59	48	65	53

'GPR114 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.36

Table S5504. Gene #560: 'GPR114 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GPR114 MUTATED	3	3	2	0
GPR114 WILD-TYPE	95	41	48	57

'GPR114 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.33

Table S5505. Gene #560: 'GPR114 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GPR114 MUTATED	5	1	0	2	1
GPR114 WILD-TYPE	57	58	40	35	58

'GPR114 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00665 (Fisher's exact test), Q value = 0.053

Table S5506. Gene #560: 'GPR114 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GPR114 MUTATED	1	0	8
GPR114 WILD-TYPE	105	54	89

Figure S1893. Get High-res Image Gene #560: 'GPR114 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR114 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.6

Table S5507. Gene #560: 'GPR114 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GPR114 MUTATED	6	2	1
GPR114 WILD-TYPE	117	93	70

'GPR114 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.6

Table S5508. Gene #560: 'GPR114 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GPR114 MUTATED	7	1	1
GPR114 WILD-TYPE	150	62	68

'GPR114 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.6

Table S5509. Gene #560: 'GPR114 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GPR114 MUTATED	2	1	2	2	1	0
GPR114 WILD-TYPE	31	18	57	37	15	45

'GPR114 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.61

Table S5510. Gene #560: 'GPR114 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GPR114 MUTATED	4	0	1	1	1	1
GPR114 WILD-TYPE	43	39	34	31	22	34

'PTPRJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.013

Table S5511. Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PTPRJ MUTATED	0	15	5	2	2
PTPRJ WILD-TYPE	79	111	22	41	10

Figure S1894. Get High-res Image Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTPRJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.067

Table S5512. Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PTPRJ MUTATED	1	11	4	3
PTPRJ WILD-TYPE	70	65	30	60

Figure S1895. Get High-res Image Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTPRJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 0.16

Table S5513. Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PTPRJ MUTATED	2	9	6	1	4
PTPRJ WILD-TYPE	14	53	45	64	51

Figure S1896. Get High-res Image Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PTPRJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00639 (Fisher's exact test), Q value = 0.052

Table S5514. Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PTPRJ MUTATED	6	9	6	1
PTPRJ WILD-TYPE	92	35	44	56

Figure S1897. Get High-res Image Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PTPRJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S5515. Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PTPRJ MUTATED	12	0	2	7	0
PTPRJ WILD-TYPE	50	59	38	30	59

Figure S1898. Get High-res Image Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PTPRJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 0.13

Table S5516. Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PTPRJ MUTATED	7	1	13
PTPRJ WILD-TYPE	99	53	84

Figure S1899. Get High-res Image Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S5517. Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PTPRJ MUTATED	22	2	0
PTPRJ WILD-TYPE	101	93	71

Figure S1900. Get High-res Image Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00186 (Fisher's exact test), Q value = 0.027

Table S5518. Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PTPRJ MUTATED	21	2	1
PTPRJ WILD-TYPE	136	61	68

Figure S1901. Get High-res Image Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.098

Table S5519. Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PTPRJ MUTATED	0	3	9	4	0	1
PTPRJ WILD-TYPE	33	16	50	35	16	44

Figure S1902. Get High-res Image Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0517 (Fisher's exact test), Q value = 0.16

Table S5520. Gene #561: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PTPRJ MUTATED	5	1	6	2	3	0
PTPRJ WILD-TYPE	42	38	29	30	20	35

'BRD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.084

Table S5521. Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BRD3 MUTATED	0	13	1	2	0
BRD3 WILD-TYPE	79	113	26	41	12

Figure S1903. Get High-res Image Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0097 (Fisher's exact test), Q value = 0.065

Table S5522. Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BRD3 MUTATED	0	8	3	2
BRD3 WILD-TYPE	71	68	31	61

Figure S1904. Get High-res Image Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 0.2

Table S5523. Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BRD3 MUTATED	1	5	2	0	5
BRD3 WILD-TYPE	15	57	49	65	50

'BRD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00452 (Fisher's exact test), Q value = 0.042

Table S5524. Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BRD3 MUTATED	4	7	2	0
BRD3 WILD-TYPE	94	37	48	57

Figure S1905. Get High-res Image Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BRD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S5525. Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BRD3 MUTATED	11	0	3	2	0
BRD3 WILD-TYPE	51	59	37	35	59

Figure S1906. Get High-res Image Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00109 (Fisher's exact test), Q value = 0.019

Table S5526. Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BRD3 MUTATED	3	0	13
BRD3 WILD-TYPE	103	54	84

Figure S1907. Get High-res Image Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BRD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0051

Table S5527. Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BRD3 MUTATED	15	1	0
BRD3 WILD-TYPE	108	94	71

Figure S1908. Get High-res Image Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.076

Table S5528. Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BRD3 MUTATED	14	0	2
BRD3 WILD-TYPE	143	63	67

Figure S1909. Get High-res Image Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BRD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.1

Table S5529. Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BRD3 MUTATED	1	3	2	5	0	0
BRD3 WILD-TYPE	32	16	57	34	16	45

Figure S1910. Get High-res Image Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BRD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.56

Table S5530. Gene #562: 'BRD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BRD3 MUTATED	4	0	2	2	2	1
BRD3 WILD-TYPE	43	39	33	30	21	34

'SLFN12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.61

Table S5531. Gene #563: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLFN12 MUTATED	1	6	0	0	0
SLFN12 WILD-TYPE	78	120	27	43	12

'SLFN12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.63

Table S5532. Gene #563: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLFN12 MUTATED	1	4	1	1
SLFN12 WILD-TYPE	70	72	33	62

'SLFN12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.19

Table S5533. Gene #563: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLFN12 MUTATED	2	2	1	0	1
SLFN12 WILD-TYPE	14	60	50	65	54

'SLFN12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.24

Table S5534. Gene #563: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLFN12 MUTATED	3	3	0	0
SLFN12 WILD-TYPE	95	41	50	57

'SLFN12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.23

Table S5535. Gene #563: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLFN12 MUTATED	4	1	0	0	0
SLFN12 WILD-TYPE	58	58	40	37	59

'SLFN12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5536. Gene #563: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLFN12 MUTATED	2	1	2
SLFN12 WILD-TYPE	104	53	95

'SLFN12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.52

Table S5537. Gene #563: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLFN12 MUTATED	5	1	1
SLFN12 WILD-TYPE	118	94	70

'SLFN12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S5538. Gene #563: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLFN12 MUTATED	6	1	0
SLFN12 WILD-TYPE	151	62	69

'SLFN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 0.94

Table S5539. Gene #563: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLFN12 MUTATED	2	0	2	2	0	1
SLFN12 WILD-TYPE	31	19	57	37	16	44

'SLFN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.37

Table S5540. Gene #563: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLFN12 MUTATED	4	1	2	0	0	0
SLFN12 WILD-TYPE	43	38	33	32	23	35

'FANCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.32

Table S5541. Gene #564: 'FANCE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FANCE MUTATED	0	6	0	0	0
FANCE WILD-TYPE	79	120	27	43	12

'FANCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.49

Table S5542. Gene #564: 'FANCE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FANCE MUTATED	0	3	1	1
FANCE WILD-TYPE	71	73	33	62

'FANCE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.21

Table S5543. Gene #564: 'FANCE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FANCE MUTATED	0	4	0	0	1
FANCE WILD-TYPE	16	58	51	65	54

'FANCE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.079

Table S5544. Gene #564: 'FANCE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FANCE MUTATED	0	2	3	0
FANCE WILD-TYPE	98	42	47	57

Figure S1911. Get High-res Image Gene #564: 'FANCE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FANCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 0.13

Table S5545. Gene #564: 'FANCE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FANCE MUTATED	4	0	0	1	0
FANCE WILD-TYPE	58	59	40	36	59

Figure S1912. Get High-res Image Gene #564: 'FANCE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FANCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S5546. Gene #564: 'FANCE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FANCE MUTATED	1	0	4
FANCE WILD-TYPE	105	54	93

'FANCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00741 (Fisher's exact test), Q value = 0.056

Table S5547. Gene #564: 'FANCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FANCE MUTATED	7	0	0
FANCE WILD-TYPE	116	95	71

Figure S1913. Get High-res Image Gene #564: 'FANCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FANCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S5548. Gene #564: 'FANCE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FANCE MUTATED	6	1	0
FANCE WILD-TYPE	151	62	69

'FANCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.79

Table S5549. Gene #564: 'FANCE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FANCE MUTATED	1	1	2	1	0	0
FANCE WILD-TYPE	32	18	57	38	16	45

'FANCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.46

Table S5550. Gene #564: 'FANCE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FANCE MUTATED	2	0	2	0	1	0
FANCE WILD-TYPE	45	39	33	32	22	35

'DUSP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 0.91

Table S5551. Gene #565: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DUSP9 MUTATED	2	3	0	0	0
DUSP9 WILD-TYPE	77	123	27	43	12

'DUSP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S5552. Gene #565: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DUSP9 MUTATED	2	0	1	0
DUSP9 WILD-TYPE	69	76	33	63

'DUSP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.53

Table S5553. Gene #565: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DUSP9 MUTATED	0	2	0	0	2
DUSP9 WILD-TYPE	16	60	51	65	53

'DUSP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00905 (Fisher's exact test), Q value = 0.063

Table S5554. Gene #565: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DUSP9 MUTATED	0	3	1	0
DUSP9 WILD-TYPE	98	41	49	57

Figure S1914. Get High-res Image Gene #565: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DUSP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S5555. Gene #565: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DUSP9 MUTATED	1	0	0	2	2
DUSP9 WILD-TYPE	61	59	40	35	57

'DUSP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.38

Table S5556. Gene #565: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DUSP9 MUTATED	1	0	4
DUSP9 WILD-TYPE	105	54	93

'DUSP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.4

Table S5557. Gene #565: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DUSP9 MUTATED	3	0	2
DUSP9 WILD-TYPE	120	95	69

'DUSP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.56

Table S5558. Gene #565: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DUSP9 MUTATED	3	0	2
DUSP9 WILD-TYPE	154	63	67

'AKAP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S5559. Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AKAP11 MUTATED	2	10	0	1	1
AKAP11 WILD-TYPE	77	116	27	42	11

'AKAP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.25

Table S5560. Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AKAP11 MUTATED	3	7	0	1
AKAP11 WILD-TYPE	68	69	34	62

'AKAP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.081

Table S5561. Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
AKAP11 MUTATED	1	5	6	0	1
AKAP11 WILD-TYPE	15	57	45	65	54

Figure S1915. Get High-res Image Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'AKAP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.083

Table S5562. Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
AKAP11 MUTATED	4	6	3	0
AKAP11 WILD-TYPE	94	38	47	57

Figure S1916. Get High-res Image Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.1

Table S5563. Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
AKAP11 MUTATED	5	0	1	5	2
AKAP11 WILD-TYPE	57	59	39	32	57

Figure S1917. Get High-res Image Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.078

Table S5564. Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
AKAP11 MUTATED	2	1	10
AKAP11 WILD-TYPE	104	53	87

Figure S1918. Get High-res Image Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.15

Table S5565. Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
AKAP11 MUTATED	10	1	3
AKAP11 WILD-TYPE	113	94	68

Figure S1919. Get High-res Image Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.13

Table S5566. Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
AKAP11 MUTATED	12	0	2
AKAP11 WILD-TYPE	145	63	67

Figure S1920. Get High-res Image Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 0.19

Table S5567. Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
AKAP11 MUTATED	4	2	2	1	0	0
AKAP11 WILD-TYPE	29	17	57	38	16	45

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.29

Table S5568. Gene #566: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
AKAP11 MUTATED	5	0	2	0	1	1
AKAP11 WILD-TYPE	42	39	33	32	22	34

'EXOSC8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.63

Table S5569. Gene #567: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EXOSC8 MUTATED	0	4	0	1	0
EXOSC8 WILD-TYPE	79	122	27	42	12

'EXOSC8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.37

Table S5570. Gene #567: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EXOSC8 MUTATED	0	2	1	0
EXOSC8 WILD-TYPE	71	74	33	63

'EXOSC8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.77

Table S5571. Gene #567: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EXOSC8 MUTATED	0	2	1	0	1
EXOSC8 WILD-TYPE	16	60	50	65	54

'EXOSC8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0344 (Fisher's exact test), Q value = 0.13

Table S5572. Gene #567: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EXOSC8 MUTATED	0	2	2	0
EXOSC8 WILD-TYPE	98	42	48	57

Figure S1921. Get High-res Image Gene #567: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EXOSC8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.13

Table S5573. Gene #567: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EXOSC8 MUTATED	4	0	0	1	0
EXOSC8 WILD-TYPE	58	59	40	36	59

Figure S1922. Get High-res Image Gene #567: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EXOSC8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S5574. Gene #567: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EXOSC8 MUTATED	1	0	4
EXOSC8 WILD-TYPE	105	54	93

'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.12

Table S5575. Gene #567: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EXOSC8 MUTATED	5	0	0
EXOSC8 WILD-TYPE	118	95	71

Figure S1923. Get High-res Image Gene #567: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.4

Table S5576. Gene #567: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EXOSC8 MUTATED	5	0	0
EXOSC8 WILD-TYPE	152	63	69

'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 0.23

Table S5577. Gene #567: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EXOSC8 MUTATED	0	1	0	2	0	0
EXOSC8 WILD-TYPE	33	18	59	37	16	45

'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.057 (Fisher's exact test), Q value = 0.17

Table S5578. Gene #567: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EXOSC8 MUTATED	1	0	0	0	2	0
EXOSC8 WILD-TYPE	46	39	35	32	21	35

'PNMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.75

Table S5579. Gene #568: 'PNMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PNMT MUTATED	1	6	0	1	0
PNMT WILD-TYPE	78	120	27	42	12

'PNMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 0.94

Table S5580. Gene #568: 'PNMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PNMT MUTATED	1	2	1	2
PNMT WILD-TYPE	70	74	33	61

'PNMT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.7

Table S5581. Gene #568: 'PNMT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PNMT MUTATED	1	1	1	2	3
PNMT WILD-TYPE	15	61	50	63	52

'PNMT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 0.85

Table S5582. Gene #568: 'PNMT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PNMT MUTATED	4	2	1	1
PNMT WILD-TYPE	94	42	49	56

'PNMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 0.83

Table S5583. Gene #568: 'PNMT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PNMT MUTATED	3	1	2	1	1
PNMT WILD-TYPE	59	58	38	36	58

'PNMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.56

Table S5584. Gene #568: 'PNMT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PNMT MUTATED	2	1	5
PNMT WILD-TYPE	104	53	92

'PNMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.37

Table S5585. Gene #568: 'PNMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PNMT MUTATED	6	1	1
PNMT WILD-TYPE	117	94	70

'PNMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.79

Table S5586. Gene #568: 'PNMT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PNMT MUTATED	6	1	1
PNMT WILD-TYPE	151	62	68

'PNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.79

Table S5587. Gene #568: 'PNMT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PNMT MUTATED	0	0	1	1	1	1
PNMT WILD-TYPE	33	19	58	38	15	44

'PNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.49

Table S5588. Gene #568: 'PNMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PNMT MUTATED	0	1	1	2	0	0
PNMT WILD-TYPE	47	38	34	30	23	35

'MAP2K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.47

Table S5589. Gene #569: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAP2K1 MUTATED	0	4	1	0	0
MAP2K1 WILD-TYPE	79	122	26	43	12

'MAP2K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 0.97

Table S5590. Gene #569: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAP2K1 MUTATED	1	2	1	1
MAP2K1 WILD-TYPE	70	74	33	62

'MAP2K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.61

Table S5591. Gene #569: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MAP2K1 MUTATED	0	1	2	0	2
MAP2K1 WILD-TYPE	16	61	49	65	53

'MAP2K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.66

Table S5592. Gene #569: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MAP2K1 MUTATED	1	2	1	1
MAP2K1 WILD-TYPE	97	42	49	56

'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0508 (Fisher's exact test), Q value = 0.16

Table S5593. Gene #569: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MAP2K1 MUTATED	3	0	0	2	0
MAP2K1 WILD-TYPE	59	59	40	35	59

'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5594. Gene #569: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MAP2K1 MUTATED	2	1	2
MAP2K1 WILD-TYPE	104	53	95

'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.46

Table S5595. Gene #569: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MAP2K1 MUTATED	4	1	0
MAP2K1 WILD-TYPE	119	94	71

'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.47

Table S5596. Gene #569: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MAP2K1 MUTATED	3	2	0
MAP2K1 WILD-TYPE	154	61	69

'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 0.85

Table S5597. Gene #569: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MAP2K1 MUTATED	1	0	3	0	0	1
MAP2K1 WILD-TYPE	32	19	56	39	16	44

'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.25

Table S5598. Gene #569: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MAP2K1 MUTATED	1	0	3	0	1	0
MAP2K1 WILD-TYPE	46	39	32	32	22	35

'ZNF292 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-04 (Fisher's exact test), Q value = 0.017

Table S5599. Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF292 MUTATED	1	18	1	0	0
ZNF292 WILD-TYPE	78	108	26	43	12

Figure S1924. Get High-res Image Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF292 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00886 (Fisher's exact test), Q value = 0.062

Table S5600. Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF292 MUTATED	1	11	3	2
ZNF292 WILD-TYPE	70	65	31	61

Figure S1925. Get High-res Image Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF292 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 0.23

Table S5601. Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZNF292 MUTATED	0	7	5	1	6
ZNF292 WILD-TYPE	16	55	46	64	49

'ZNF292 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0025

Table S5602. Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZNF292 MUTATED	3	12	3	1
ZNF292 WILD-TYPE	95	32	47	56

Figure S1926. Get High-res Image Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF292 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S5603. Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZNF292 MUTATED	14	2	1	2	0
ZNF292 WILD-TYPE	48	57	39	35	59

Figure S1927. Get High-res Image Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF292 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.013

Table S5604. Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZNF292 MUTATED	2	2	15
ZNF292 WILD-TYPE	104	52	82

Figure S1928. Get High-res Image Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF292 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00097 (Fisher's exact test), Q value = 0.018

Table S5605. Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZNF292 MUTATED	17	3	1
ZNF292 WILD-TYPE	106	92	70

Figure S1929. Get High-res Image Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF292 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 7e-04 (Fisher's exact test), Q value = 0.014

Table S5606. Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZNF292 MUTATED	19	2	0
ZNF292 WILD-TYPE	138	61	69

Figure S1930. Get High-res Image Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF292 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S5607. Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZNF292 MUTATED	2	2	4	6	0	1
ZNF292 WILD-TYPE	31	17	55	33	16	44

'ZNF292 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.29

Table S5608. Gene #570: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZNF292 MUTATED	5	1	4	2	3	0
ZNF292 WILD-TYPE	42	38	31	30	20	35

'SCN9A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.86

Table S5609. Gene #571: 'SCN9A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SCN9A MUTATED	6	12	3	4	2
SCN9A WILD-TYPE	73	114	24	39	10

'SCN9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.071

Table S5610. Gene #571: 'SCN9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SCN9A MUTATED	7	14	1	2
SCN9A WILD-TYPE	64	62	33	61

Figure S1931. Get High-res Image Gene #571: 'SCN9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SCN9A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.33

Table S5611. Gene #571: 'SCN9A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SCN9A MUTATED	3	7	5	2	6
SCN9A WILD-TYPE	13	55	46	63	49

'SCN9A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0418 (Fisher's exact test), Q value = 0.14

Table S5612. Gene #571: 'SCN9A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SCN9A MUTATED	8	9	4	2
SCN9A WILD-TYPE	90	35	46	55

Figure S1932. Get High-res Image Gene #571: 'SCN9A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SCN9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00562 (Fisher's exact test), Q value = 0.048

Table S5613. Gene #571: 'SCN9A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SCN9A MUTATED	13	1	4	2	4
SCN9A WILD-TYPE	49	58	36	35	55

Figure S1933. Get High-res Image Gene #571: 'SCN9A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SCN9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.073

Table S5614. Gene #571: 'SCN9A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SCN9A MUTATED	6	2	16
SCN9A WILD-TYPE	100	52	81

Figure S1934. Get High-res Image Gene #571: 'SCN9A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SCN9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 0.23

Table S5615. Gene #571: 'SCN9A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SCN9A MUTATED	17	5	6
SCN9A WILD-TYPE	106	90	65

'SCN9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S5616. Gene #571: 'SCN9A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SCN9A MUTATED	19	2	7
SCN9A WILD-TYPE	138	61	62

'SCN9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.36

Table S5617. Gene #571: 'SCN9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SCN9A MUTATED	5	1	8	6	1	1
SCN9A WILD-TYPE	28	18	51	33	15	44

'SCN9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.4

Table S5618. Gene #571: 'SCN9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SCN9A MUTATED	9	1	4	3	2	3
SCN9A WILD-TYPE	38	38	31	29	21	32

'KANK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.28

Table S5619. Gene #572: 'KANK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KANK4 MUTATED	0	8	1	1	0
KANK4 WILD-TYPE	79	118	26	42	12

'KANK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0471 (Fisher's exact test), Q value = 0.15

Table S5620. Gene #572: 'KANK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KANK4 MUTATED	2	6	0	0
KANK4 WILD-TYPE	69	70	34	63

Figure S1935. Get High-res Image Gene #572: 'KANK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KANK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.4

Table S5621. Gene #572: 'KANK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KANK4 MUTATED	1	2	3	0	2
KANK4 WILD-TYPE	15	60	48	65	53

'KANK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.076

Table S5622. Gene #572: 'KANK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KANK4 MUTATED	2	5	1	0
KANK4 WILD-TYPE	96	39	49	57

Figure S1936. Get High-res Image Gene #572: 'KANK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KANK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.26

Table S5623. Gene #572: 'KANK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KANK4 MUTATED	5	0	2	1	1
KANK4 WILD-TYPE	57	59	38	36	58

'KANK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00036 (Fisher's exact test), Q value = 0.0097

Table S5624. Gene #572: 'KANK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KANK4 MUTATED	0	0	9
KANK4 WILD-TYPE	106	54	88

Figure S1937. Get High-res Image Gene #572: 'KANK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KANK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0822 (Fisher's exact test), Q value = 0.21

Table S5625. Gene #572: 'KANK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KANK4 MUTATED	8	1	1
KANK4 WILD-TYPE	115	94	70

'KANK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0764 (Fisher's exact test), Q value = 0.2

Table S5626. Gene #572: 'KANK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KANK4 MUTATED	9	0	1
KANK4 WILD-TYPE	148	63	68

'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S5627. Gene #572: 'KANK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KANK4 MUTATED	1	1	2	3	0	1
KANK4 WILD-TYPE	32	18	57	36	16	44

'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.78

Table S5628. Gene #572: 'KANK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KANK4 MUTATED	3	0	2	1	1	1
KANK4 WILD-TYPE	44	39	33	31	22	34

'DQX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.61

Table S5629. Gene #573: 'DQX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DQX1 MUTATED	1	7	0	1	0
DQX1 WILD-TYPE	78	119	27	42	12

'DQX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.48

Table S5630. Gene #573: 'DQX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DQX1 MUTATED	1	5	1	1
DQX1 WILD-TYPE	70	71	33	62

'DQX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.67

Table S5631. Gene #573: 'DQX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DQX1 MUTATED	0	4	1	1	1
DQX1 WILD-TYPE	16	58	50	64	54

'DQX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.067

Table S5632. Gene #573: 'DQX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DQX1 MUTATED	0	4	2	1
DQX1 WILD-TYPE	98	40	48	56

Figure S1938. Get High-res Image Gene #573: 'DQX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DQX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S5633. Gene #573: 'DQX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DQX1 MUTATED	4	1	0	3	1
DQX1 WILD-TYPE	58	58	40	34	58

'DQX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00694 (Fisher's exact test), Q value = 0.054

Table S5634. Gene #573: 'DQX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DQX1 MUTATED	1	0	8
DQX1 WILD-TYPE	105	54	89

Figure S1939. Get High-res Image Gene #573: 'DQX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DQX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.41

Table S5635. Gene #573: 'DQX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DQX1 MUTATED	6	1	2
DQX1 WILD-TYPE	117	94	69

'DQX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.4

Table S5636. Gene #573: 'DQX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DQX1 MUTATED	7	0	2
DQX1 WILD-TYPE	150	63	67

'DQX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.28

Table S5637. Gene #573: 'DQX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DQX1 MUTATED	2	2	1	1	1	0
DQX1 WILD-TYPE	31	17	58	38	15	45

'DQX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.52

Table S5638. Gene #573: 'DQX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DQX1 MUTATED	4	0	1	1	0	1
DQX1 WILD-TYPE	43	39	34	31	23	34

'CYP7B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 0.91

Table S5639. Gene #574: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CYP7B1 MUTATED	5	9	1	1	0
CYP7B1 WILD-TYPE	74	117	26	42	12

'CYP7B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 0.85

Table S5640. Gene #574: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CYP7B1 MUTATED	3	4	1	5
CYP7B1 WILD-TYPE	68	72	33	58

'CYP7B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.42

Table S5641. Gene #574: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CYP7B1 MUTATED	1	7	2	4	1
CYP7B1 WILD-TYPE	15	55	49	61	54

'CYP7B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.25

Table S5642. Gene #574: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CYP7B1 MUTATED	4	2	7	2
CYP7B1 WILD-TYPE	94	42	43	55

'CYP7B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.58

Table S5643. Gene #574: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CYP7B1 MUTATED	4	3	0	2	5
CYP7B1 WILD-TYPE	58	56	40	35	54

'CYP7B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0324 (Fisher's exact test), Q value = 0.13

Table S5644. Gene #574: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CYP7B1 MUTATED	10	0	4
CYP7B1 WILD-TYPE	96	54	93

Figure S1940. Get High-res Image Gene #574: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.45

Table S5645. Gene #574: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CYP7B1 MUTATED	6	8	2
CYP7B1 WILD-TYPE	117	87	69

'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.26

Table S5646. Gene #574: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CYP7B1 MUTATED	5	6	5
CYP7B1 WILD-TYPE	152	57	64

'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5647. Gene #574: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CYP7B1 MUTATED	2	1	4	2	1	3
CYP7B1 WILD-TYPE	31	18	55	37	15	42

'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00305 (Fisher's exact test), Q value = 0.034

Table S5648. Gene #574: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CYP7B1 MUTATED	0	0	4	1	4	4
CYP7B1 WILD-TYPE	47	39	31	31	19	31

Figure S1941. Get High-res Image Gene #574: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.11

Table S5649. Gene #575: 'C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C3 MUTATED	2	18	3	2	0
C3 WILD-TYPE	77	108	24	41	12

Figure S1942. Get High-res Image Gene #575: 'C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.17

Table S5650. Gene #575: 'C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C3 MUTATED	5	10	6	2
C3 WILD-TYPE	66	66	28	61

'C3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S5651. Gene #575: 'C3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C3 MUTATED	3	9	4	2	6
C3 WILD-TYPE	13	53	47	63	49

'C3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0508 (Fisher's exact test), Q value = 0.16

Table S5652. Gene #575: 'C3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C3 MUTATED	5	9	5	5
C3 WILD-TYPE	93	35	45	52

'C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.18

Table S5653. Gene #575: 'C3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C3 MUTATED	10	3	1	3	2
C3 WILD-TYPE	52	56	39	34	57

'C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.48

Table S5654. Gene #575: 'C3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C3 MUTATED	7	2	10
C3 WILD-TYPE	99	52	87

'C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 0.19

Table S5655. Gene #575: 'C3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C3 MUTATED	15	8	2
C3 WILD-TYPE	108	87	69

'C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.43

Table S5656. Gene #575: 'C3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C3 MUTATED	17	5	3
C3 WILD-TYPE	140	58	66

'C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.18

Table S5657. Gene #575: 'C3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C3 MUTATED	1	2	12	2	0	5
C3 WILD-TYPE	32	17	47	37	16	40

'C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 0.15

Table S5658. Gene #575: 'C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C3 MUTATED	7	2	6	1	5	1
C3 WILD-TYPE	40	37	29	31	18	34

Figure S1943. Get High-res Image Gene #575: 'C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ATRIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.63

Table S5659. Gene #576: 'ATRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ATRIP MUTATED	0	4	0	1	0
ATRIP WILD-TYPE	79	122	27	42	12

'ATRIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.13

Table S5660. Gene #576: 'ATRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ATRIP MUTATED	0	4	0	0
ATRIP WILD-TYPE	71	72	34	63

Figure S1944. Get High-res Image Gene #576: 'ATRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATRIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.7

Table S5661. Gene #576: 'ATRIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ATRIP MUTATED	0	2	1	0	2
ATRIP WILD-TYPE	16	60	50	65	53

'ATRIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S5662. Gene #576: 'ATRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ATRIP MUTATED	0	5	0	0
ATRIP WILD-TYPE	98	39	50	57

Figure S1945. Get High-res Image Gene #576: 'ATRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATRIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 0.16

Table S5663. Gene #576: 'ATRIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ATRIP MUTATED	3	0	0	2	0
ATRIP WILD-TYPE	59	59	40	35	59

'ATRIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.081

Table S5664. Gene #576: 'ATRIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ATRIP MUTATED	0	0	5
ATRIP WILD-TYPE	106	54	92

Figure S1946. Get High-res Image Gene #576: 'ATRIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATRIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S5665. Gene #576: 'ATRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ATRIP MUTATED	4	0	1
ATRIP WILD-TYPE	119	95	70

'ATRIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.4

Table S5666. Gene #576: 'ATRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ATRIP MUTATED	5	0	0
ATRIP WILD-TYPE	152	63	69

'ATRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 0.21

Table S5667. Gene #576: 'ATRIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ATRIP MUTATED	1	0	0	3	0	0
ATRIP WILD-TYPE	32	19	59	36	16	45

'ATRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.26

Table S5668. Gene #576: 'ATRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ATRIP MUTATED	3	0	0	0	1	0
ATRIP WILD-TYPE	44	39	35	32	22	35

'CDC5L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.29

Table S5669. Gene #577: 'CDC5L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDC5L MUTATED	1	11	1	1	0
CDC5L WILD-TYPE	78	115	26	42	12

'CDC5L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.076

Table S5670. Gene #577: 'CDC5L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDC5L MUTATED	1	8	0	1
CDC5L WILD-TYPE	70	68	34	62

Figure S1947. Get High-res Image Gene #577: 'CDC5L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDC5L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.7

Table S5671. Gene #577: 'CDC5L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CDC5L MUTATED	0	4	3	1	3
CDC5L WILD-TYPE	16	58	48	64	52

'CDC5L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.097

Table S5672. Gene #577: 'CDC5L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CDC5L MUTATED	2	6	2	1
CDC5L WILD-TYPE	96	38	48	56

Figure S1948. Get High-res Image Gene #577: 'CDC5L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDC5L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S5673. Gene #577: 'CDC5L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CDC5L MUTATED	7	2	0	3	2
CDC5L WILD-TYPE	55	57	40	34	57

'CDC5L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.36

Table S5674. Gene #577: 'CDC5L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CDC5L MUTATED	3	3	8
CDC5L WILD-TYPE	103	51	89

'CDC5L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 0.18

Table S5675. Gene #577: 'CDC5L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CDC5L MUTATED	11	3	1
CDC5L WILD-TYPE	112	92	70

'CDC5L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.27

Table S5676. Gene #577: 'CDC5L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CDC5L MUTATED	12	2	1
CDC5L WILD-TYPE	145	61	68

'CDC5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.66

Table S5677. Gene #577: 'CDC5L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CDC5L MUTATED	2	1	2	4	0	1
CDC5L WILD-TYPE	31	18	57	35	16	44

'CDC5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.65

Table S5678. Gene #577: 'CDC5L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CDC5L MUTATED	3	1	2	3	1	0
CDC5L WILD-TYPE	44	38	33	29	22	35

'SMAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.4

Table S5679. Gene #578: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SMAD2 MUTATED	1	6	1	0	1
SMAD2 WILD-TYPE	78	120	26	43	11

'SMAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.098

Table S5680. Gene #578: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SMAD2 MUTATED	0	5	1	0
SMAD2 WILD-TYPE	71	71	33	63

Figure S1949. Get High-res Image Gene #578: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMAD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.38

Table S5681. Gene #578: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SMAD2 MUTATED	1	3	2	0	1
SMAD2 WILD-TYPE	15	59	49	65	54

'SMAD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.32

Table S5682. Gene #578: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SMAD2 MUTATED	2	2	3	0
SMAD2 WILD-TYPE	96	42	47	57

'SMAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.068

Table S5683. Gene #578: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SMAD2 MUTATED	3	0	1	4	0
SMAD2 WILD-TYPE	59	59	39	33	59

Figure S1950. Get High-res Image Gene #578: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SMAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0192 (Fisher's exact test), Q value = 0.093

Table S5684. Gene #578: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SMAD2 MUTATED	0	2	6
SMAD2 WILD-TYPE	106	52	91

Figure S1951. Get High-res Image Gene #578: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SMAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S5685. Gene #578: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SMAD2 MUTATED	7	1	1
SMAD2 WILD-TYPE	116	94	70

'SMAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.099

Table S5686. Gene #578: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SMAD2 MUTATED	9	0	0
SMAD2 WILD-TYPE	148	63	69

Figure S1952. Get High-res Image Gene #578: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SMAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.64

Table S5687. Gene #578: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SMAD2 MUTATED	1	1	1	2	0	0
SMAD2 WILD-TYPE	32	18	58	37	16	45

'SMAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.41

Table S5688. Gene #578: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SMAD2 MUTATED	3	0	1	0	1	0
SMAD2 WILD-TYPE	44	39	34	32	22	35

'IDE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.25

Table S5689. Gene #579: 'IDE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IDE MUTATED	1	5	3	0	0
IDE WILD-TYPE	78	121	24	43	12

'IDE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.63

Table S5690. Gene #579: 'IDE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IDE MUTATED	1	4	1	1
IDE WILD-TYPE	70	72	33	62

'IDE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S5691. Gene #579: 'IDE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IDE MUTATED	1	1	2	0	4
IDE WILD-TYPE	15	61	49	65	51

'IDE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00741 (Fisher's exact test), Q value = 0.056

Table S5692. Gene #579: 'IDE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IDE MUTATED	3	5	0	0
IDE WILD-TYPE	95	39	50	57

Figure S1953. Get High-res Image Gene #579: 'IDE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IDE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.11

Table S5693. Gene #579: 'IDE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IDE MUTATED	1	0	1	4	1
IDE WILD-TYPE	61	59	39	33	58

Figure S1954. Get High-res Image Gene #579: 'IDE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IDE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00156 (Fisher's exact test), Q value = 0.024

Table S5694. Gene #579: 'IDE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IDE MUTATED	0	0	7
IDE WILD-TYPE	106	54	90

Figure S1955. Get High-res Image Gene #579: 'IDE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IDE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.3

Table S5695. Gene #579: 'IDE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IDE MUTATED	7	1	1
IDE WILD-TYPE	116	94	70

'IDE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.6

Table S5696. Gene #579: 'IDE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IDE MUTATED	7	1	1
IDE WILD-TYPE	150	62	68

'IDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.37

Table S5697. Gene #579: 'IDE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IDE MUTATED	3	1	1	0	0	1
IDE WILD-TYPE	30	18	58	39	16	44

'IDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 0.79

Table S5698. Gene #579: 'IDE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IDE MUTATED	3	1	1	1	0	0
IDE WILD-TYPE	44	38	34	31	23	35

'PCBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.35

Table S5699. Gene #580: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PCBP2 MUTATED	0	3	0	0	1
PCBP2 WILD-TYPE	79	123	27	43	11

'PCBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.13

Table S5700. Gene #580: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PCBP2 MUTATED	0	4	0	0
PCBP2 WILD-TYPE	71	72	34	63

Figure S1956. Get High-res Image Gene #580: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S5701. Gene #580: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PCBP2 MUTATED	2	0	2	0	0
PCBP2 WILD-TYPE	60	59	38	37	59

'PCBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 0.16

Table S5702. Gene #580: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PCBP2 MUTATED	0	0	4
PCBP2 WILD-TYPE	106	54	93

Figure S1957. Get High-res Image Gene #580: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PCBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0901 (Fisher's exact test), Q value = 0.22

Table S5703. Gene #580: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PCBP2 MUTATED	4	0	0
PCBP2 WILD-TYPE	119	95	71

'PCBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.56

Table S5704. Gene #580: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PCBP2 MUTATED	4	0	0
PCBP2 WILD-TYPE	153	63	69

'PCBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S5705. Gene #580: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PCBP2 MUTATED	1	0	0	2	0	0
PCBP2 WILD-TYPE	32	19	59	37	16	45

'PCBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.61

Table S5706. Gene #580: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PCBP2 MUTATED	2	0	0	1	0	0
PCBP2 WILD-TYPE	45	39	35	31	23	35

'CBLN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S5707. Gene #581: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CBLN3 MUTATED	0	3	2	0	0
CBLN3 WILD-TYPE	79	123	25	43	12

'CBLN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.52

Table S5708. Gene #581: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CBLN3 MUTATED	1	3	0	0
CBLN3 WILD-TYPE	70	73	34	63

'CBLN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.51

Table S5709. Gene #581: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CBLN3 MUTATED	1	1	1	0	1
CBLN3 WILD-TYPE	15	61	50	65	54

'CBLN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.37

Table S5710. Gene #581: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CBLN3 MUTATED	2	2	0	0
CBLN3 WILD-TYPE	96	42	50	57

'CBLN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.25

Table S5711. Gene #581: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CBLN3 MUTATED	2	0	2	0	0
CBLN3 WILD-TYPE	60	59	38	37	59

'CBLN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 0.16

Table S5712. Gene #581: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CBLN3 MUTATED	0	0	4
CBLN3 WILD-TYPE	106	54	93

Figure S1958. Get High-res Image Gene #581: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CBLN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S5713. Gene #581: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CBLN3 MUTATED	4	0	1
CBLN3 WILD-TYPE	119	95	70

'CBLN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.4

Table S5714. Gene #581: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CBLN3 MUTATED	5	0	0
CBLN3 WILD-TYPE	152	63	69

'CBLN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.63

Table S5715. Gene #581: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CBLN3 MUTATED	2	0	1	1	0	0
CBLN3 WILD-TYPE	31	19	58	38	16	45

'CBLN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.6

Table S5716. Gene #581: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CBLN3 MUTATED	2	0	1	0	1	0
CBLN3 WILD-TYPE	45	39	34	32	22	35

'AP3M2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S5717. Gene #582: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AP3M2 MUTATED	1	6	0	1	2
AP3M2 WILD-TYPE	78	120	27	42	10

'AP3M2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.63

Table S5718. Gene #582: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AP3M2 MUTATED	1	4	1	1
AP3M2 WILD-TYPE	70	72	33	62

'AP3M2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S5719. Gene #582: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
AP3M2 MUTATED	0	3	2	2	2
AP3M2 WILD-TYPE	16	59	49	63	53

'AP3M2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0165 (Fisher's exact test), Q value = 0.085

Table S5720. Gene #582: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
AP3M2 MUTATED	2	5	2	0
AP3M2 WILD-TYPE	96	39	48	57

Figure S1959. Get High-res Image Gene #582: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AP3M2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0581 (Fisher's exact test), Q value = 0.17

Table S5721. Gene #582: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
AP3M2 MUTATED	4	1	4	1	0
AP3M2 WILD-TYPE	58	58	36	36	59

'AP3M2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.55

Table S5722. Gene #582: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
AP3M2 MUTATED	3	1	6
AP3M2 WILD-TYPE	103	53	91

'AP3M2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0447 (Fisher's exact test), Q value = 0.15

Table S5723. Gene #582: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
AP3M2 MUTATED	8	2	0
AP3M2 WILD-TYPE	115	93	71

Figure S1960. Get High-res Image Gene #582: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AP3M2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.29

Table S5724. Gene #582: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
AP3M2 MUTATED	8	2	0
AP3M2 WILD-TYPE	149	61	69

'AP3M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S5725. Gene #582: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
AP3M2 MUTATED	1	1	2	1	0	0
AP3M2 WILD-TYPE	32	18	57	38	16	45

'AP3M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.61

Table S5726. Gene #582: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
AP3M2 MUTATED	2	0	2	1	0	0
AP3M2 WILD-TYPE	45	39	33	31	23	35

'HOOK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S5727. Gene #583: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HOOK1 MUTATED	0	6	0	0	0
HOOK1 WILD-TYPE	79	120	27	43	12

'HOOK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.49

Table S5728. Gene #583: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HOOK1 MUTATED	0	3	1	1
HOOK1 WILD-TYPE	71	73	33	62

'HOOK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 0.95

Table S5729. Gene #583: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HOOK1 MUTATED	0	1	1	1	2
HOOK1 WILD-TYPE	16	61	50	64	53

'HOOK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.14

Table S5730. Gene #583: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HOOK1 MUTATED	0	3	1	1
HOOK1 WILD-TYPE	98	41	49	56

Figure S1961. Get High-res Image Gene #583: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HOOK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.13

Table S5731. Gene #583: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HOOK1 MUTATED	4	0	0	1	0
HOOK1 WILD-TYPE	58	59	40	36	59

Figure S1962. Get High-res Image Gene #583: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HOOK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S5732. Gene #583: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HOOK1 MUTATED	1	0	4
HOOK1 WILD-TYPE	105	54	93

'HOOK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.29

Table S5733. Gene #583: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HOOK1 MUTATED	5	1	0
HOOK1 WILD-TYPE	118	94	71

'HOOK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S5734. Gene #583: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HOOK1 MUTATED	6	0	0
HOOK1 WILD-TYPE	151	63	69

'HOOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 0.91

Table S5735. Gene #583: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HOOK1 MUTATED	1	0	2	1	0	0
HOOK1 WILD-TYPE	32	19	57	38	16	45

'HOOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.45

Table S5736. Gene #583: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HOOK1 MUTATED	2	0	2	0	0	0
HOOK1 WILD-TYPE	45	39	33	32	23	35

'DUSP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S5737. Gene #584: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DUSP11 MUTATED	0	4	0	0	0
DUSP11 WILD-TYPE	79	122	27	43	12

'DUSP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.29

Table S5738. Gene #584: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DUSP11 MUTATED	0	3	0	0
DUSP11 WILD-TYPE	71	73	34	63

'DUSP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.56

Table S5739. Gene #584: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DUSP11 MUTATED	0	2	1	0	0
DUSP11 WILD-TYPE	16	60	50	65	55

'DUSP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0437 (Fisher's exact test), Q value = 0.15

Table S5740. Gene #584: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DUSP11 MUTATED	0	2	1	0
DUSP11 WILD-TYPE	98	42	49	57

Figure S1963. Get High-res Image Gene #584: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DUSP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.42

Table S5741. Gene #584: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DUSP11 MUTATED	2	0	0	1	0
DUSP11 WILD-TYPE	60	59	40	36	59

'DUSP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S5742. Gene #584: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DUSP11 MUTATED	0	0	3
DUSP11 WILD-TYPE	106	54	94

'DUSP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0894 (Fisher's exact test), Q value = 0.22

Table S5743. Gene #584: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DUSP11 MUTATED	4	0	0
DUSP11 WILD-TYPE	119	95	71

'DUSP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.56

Table S5744. Gene #584: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DUSP11 MUTATED	4	0	0
DUSP11 WILD-TYPE	153	63	69

'DUSP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.51

Table S5745. Gene #584: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DUSP11 MUTATED	0	1	2	0	0	0
DUSP11 WILD-TYPE	33	18	57	39	16	45

'DUSP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.7

Table S5746. Gene #584: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DUSP11 MUTATED	2	0	1	0	0	0
DUSP11 WILD-TYPE	45	39	34	32	23	35

'CNKSR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.4

Table S5747. Gene #585: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CNKSR1 MUTATED	0	6	0	1	0
CNKSR1 WILD-TYPE	79	120	27	42	12

'CNKSR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.098

Table S5748. Gene #585: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CNKSR1 MUTATED	0	5	1	0
CNKSR1 WILD-TYPE	71	71	33	63

Figure S1964. Get High-res Image Gene #585: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CNKSR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.39

Table S5749. Gene #585: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CNKSR1 MUTATED	0	1	3	0	2
CNKSR1 WILD-TYPE	16	61	48	65	53

'CNKSR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0225 (Fisher's exact test), Q value = 0.1

Table S5750. Gene #585: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CNKSR1 MUTATED	1	4	1	0
CNKSR1 WILD-TYPE	97	40	49	57

Figure S1965. Get High-res Image Gene #585: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CNKSR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.059 (Fisher's exact test), Q value = 0.17

Table S5751. Gene #585: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CNKSR1 MUTATED	4	0	1	2	0
CNKSR1 WILD-TYPE	58	59	39	35	59

'CNKSR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00135 (Fisher's exact test), Q value = 0.021

Table S5752. Gene #585: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CNKSR1 MUTATED	0	0	7
CNKSR1 WILD-TYPE	106	54	90

Figure S1966. Get High-res Image Gene #585: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CNKSR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00753 (Fisher's exact test), Q value = 0.056

Table S5753. Gene #585: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CNKSR1 MUTATED	7	0	0
CNKSR1 WILD-TYPE	116	95	71

Figure S1967. Get High-res Image Gene #585: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CNKSR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0707 (Fisher's exact test), Q value = 0.19

Table S5754. Gene #585: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CNKSR1 MUTATED	7	0	0
CNKSR1 WILD-TYPE	150	63	69

'CNKSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.37

Table S5755. Gene #585: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CNKSR1 MUTATED	0	0	1	3	0	0
CNKSR1 WILD-TYPE	33	19	58	36	16	45

'CNKSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S5756. Gene #585: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CNKSR1 MUTATED	1	0	0	2	1	0
CNKSR1 WILD-TYPE	46	39	35	30	22	35

'PPARGC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.4

Table S5757. Gene #586: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PPARGC1B MUTATED	0	6	0	1	0
PPARGC1B WILD-TYPE	79	120	27	42	12

'PPARGC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00367 (Fisher's exact test), Q value = 0.038

Table S5758. Gene #586: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PPARGC1B MUTATED	0	6	0	0
PPARGC1B WILD-TYPE	71	70	34	63

Figure S1968. Get High-res Image Gene #586: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PPARGC1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.21

Table S5759. Gene #586: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PPARGC1B MUTATED	0	4	0	0	1
PPARGC1B WILD-TYPE	16	58	51	65	54

'PPARGC1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.079

Table S5760. Gene #586: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PPARGC1B MUTATED	0	2	3	0
PPARGC1B WILD-TYPE	98	42	47	57

Figure S1969. Get High-res Image Gene #586: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.17

Table S5761. Gene #586: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PPARGC1B MUTATED	5	1	0	1	0
PPARGC1B WILD-TYPE	57	58	40	36	59

'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.3

Table S5762. Gene #586: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PPARGC1B MUTATED	1	1	5
PPARGC1B WILD-TYPE	105	53	92

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.86

Table S5763. Gene #586: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PPARGC1B MUTATED	4	2	1
PPARGC1B WILD-TYPE	119	93	70

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.19

Table S5764. Gene #586: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PPARGC1B MUTATED	7	0	0
PPARGC1B WILD-TYPE	150	63	69

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00258 (Fisher's exact test), Q value = 0.032

Table S5765. Gene #586: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PPARGC1B MUTATED	0	1	0	5	0	0
PPARGC1B WILD-TYPE	33	18	59	34	16	45

Figure S1970. Get High-res Image Gene #586: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.086

Table S5766. Gene #586: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PPARGC1B MUTATED	4	0	0	0	2	0
PPARGC1B WILD-TYPE	43	39	35	32	21	35

Figure S1971. Get High-res Image Gene #586: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SCAMP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.34

Table S5767. Gene #587: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SCAMP2 MUTATED	0	4	0	1	1
SCAMP2 WILD-TYPE	79	122	27	42	11

'SCAMP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0966 (Fisher's exact test), Q value = 0.23

Table S5768. Gene #587: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SCAMP2 MUTATED	0	3	1	0
SCAMP2 WILD-TYPE	71	73	33	63

'SCAMP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.27

Table S5769. Gene #587: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SCAMP2 MUTATED	0	3	0	0	3
SCAMP2 WILD-TYPE	16	59	51	65	52

'SCAMP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0817 (Fisher's exact test), Q value = 0.21

Table S5770. Gene #587: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SCAMP2 MUTATED	1	2	3	0
SCAMP2 WILD-TYPE	97	42	47	57

'SCAMP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.35

Table S5771. Gene #587: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SCAMP2 MUTATED	3	1	0	2	0
SCAMP2 WILD-TYPE	59	58	40	35	59

'SCAMP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0712 (Fisher's exact test), Q value = 0.19

Table S5772. Gene #587: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SCAMP2 MUTATED	0	2	4
SCAMP2 WILD-TYPE	106	52	93

'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.48

Table S5773. Gene #587: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SCAMP2 MUTATED	4	2	0
SCAMP2 WILD-TYPE	119	93	71

'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S5774. Gene #587: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SCAMP2 MUTATED	6	0	0
SCAMP2 WILD-TYPE	151	63	69

'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.6

Table S5775. Gene #587: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SCAMP2 MUTATED	1	0	0	2	0	1
SCAMP2 WILD-TYPE	32	19	59	37	16	44

'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.26

Table S5776. Gene #587: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SCAMP2 MUTATED	1	0	0	1	2	0
SCAMP2 WILD-TYPE	46	39	35	31	21	35

'TMEM79 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S5777. Gene #588: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TMEM79 MUTATED	0	6	0	0	0
TMEM79 WILD-TYPE	79	120	27	43	12

'TMEM79 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.077

Table S5778. Gene #588: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TMEM79 MUTATED	0	5	0	0
TMEM79 WILD-TYPE	71	71	34	63

Figure S1972. Get High-res Image Gene #588: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TMEM79 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.21

Table S5779. Gene #588: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TMEM79 MUTATED	0	1	3	0	0
TMEM79 WILD-TYPE	16	61	48	65	55

'TMEM79 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0504 (Fisher's exact test), Q value = 0.16

Table S5780. Gene #588: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TMEM79 MUTATED	1	3	0	0
TMEM79 WILD-TYPE	97	41	50	57

'TMEM79 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.41

Table S5781. Gene #588: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TMEM79 MUTATED	2	1	0	2	0
TMEM79 WILD-TYPE	60	58	40	35	59

'TMEM79 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0751 (Fisher's exact test), Q value = 0.2

Table S5782. Gene #588: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TMEM79 MUTATED	0	1	4
TMEM79 WILD-TYPE	106	53	93

'TMEM79 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.29

Table S5783. Gene #588: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TMEM79 MUTATED	5	1	0
TMEM79 WILD-TYPE	118	94	71

'TMEM79 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.26

Table S5784. Gene #588: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TMEM79 MUTATED	6	0	0
TMEM79 WILD-TYPE	151	63	69

'TMEM79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0762 (Fisher's exact test), Q value = 0.2

Table S5785. Gene #588: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TMEM79 MUTATED	0	2	2	0	0	0
TMEM79 WILD-TYPE	33	17	57	39	16	45

'TMEM79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S5786. Gene #588: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TMEM79 MUTATED	3	0	0	0	1	0
TMEM79 WILD-TYPE	44	39	35	32	22	35

'CD1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.79

Table S5787. Gene #589: 'CD1E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CD1E MUTATED	3	2	1	1	0
CD1E WILD-TYPE	76	124	26	42	12

'CD1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.87

Table S5788. Gene #589: 'CD1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CD1E MUTATED	1	2	0	2
CD1E WILD-TYPE	70	74	34	61

'CD1E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0814 (Fisher's exact test), Q value = 0.21

Table S5789. Gene #589: 'CD1E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CD1E MUTATED	2	2	2	0	1
CD1E WILD-TYPE	14	60	49	65	54

'CD1E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 0.91

Table S5790. Gene #589: 'CD1E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CD1E MUTATED	3	2	1	1
CD1E WILD-TYPE	95	42	49	56

'CD1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S5791. Gene #589: 'CD1E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CD1E MUTATED	1	1	0	2	3
CD1E WILD-TYPE	61	58	40	35	56

'CD1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 0.93

Table S5792. Gene #589: 'CD1E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CD1E MUTATED	3	2	2
CD1E WILD-TYPE	103	52	95

'CD1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.72

Table S5793. Gene #589: 'CD1E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CD1E MUTATED	4	1	2
CD1E WILD-TYPE	119	94	69

'CD1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 0.69

Table S5794. Gene #589: 'CD1E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CD1E MUTATED	3	1	3
CD1E WILD-TYPE	154	62	66

'CD1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.29

Table S5795. Gene #589: 'CD1E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CD1E MUTATED	2	1	0	0	0	1
CD1E WILD-TYPE	31	18	59	39	16	44

'CD1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S5796. Gene #589: 'CD1E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CD1E MUTATED	0	2	0	0	0	2
CD1E WILD-TYPE	47	37	35	32	23	33

'EEF2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.74

Table S5797. Gene #590: 'EEF2K MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EEF2K MUTATED	2	4	0	1	1
EEF2K WILD-TYPE	77	122	27	42	11

'EEF2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5798. Gene #590: 'EEF2K MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EEF2K MUTATED	2	2	0	1
EEF2K WILD-TYPE	69	74	34	62

'EEF2K MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.63

Table S5799. Gene #590: 'EEF2K MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EEF2K MUTATED	1	1	1	1	3
EEF2K WILD-TYPE	15	61	50	64	52

'EEF2K MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.41

Table S5800. Gene #590: 'EEF2K MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EEF2K MUTATED	3	3	0	1
EEF2K WILD-TYPE	95	41	50	56

'EEF2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.63

Table S5801. Gene #590: 'EEF2K MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EEF2K MUTATED	4	1	0	1	2
EEF2K WILD-TYPE	58	58	40	36	57

'EEF2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.51

Table S5802. Gene #590: 'EEF2K MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EEF2K MUTATED	4	0	4
EEF2K WILD-TYPE	102	54	93

'EEF2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.4

Table S5803. Gene #590: 'EEF2K MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EEF2K MUTATED	6	1	2
EEF2K WILD-TYPE	117	94	69

'EEF2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.6

Table S5804. Gene #590: 'EEF2K MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EEF2K MUTATED	7	1	1
EEF2K WILD-TYPE	150	62	68

'EEF2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.56

Table S5805. Gene #590: 'EEF2K MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EEF2K MUTATED	2	0	1	2	0	0
EEF2K WILD-TYPE	31	19	58	37	16	45

'EEF2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 0.92

Table S5806. Gene #590: 'EEF2K MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EEF2K MUTATED	2	0	1	1	0	1
EEF2K WILD-TYPE	45	39	34	31	23	34

'MON2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00428 (Fisher's exact test), Q value = 0.041

Table S5807. Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MON2 MUTATED	0	13	1	0	0
MON2 WILD-TYPE	79	113	26	43	12

Figure S1973. Get High-res Image Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MON2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.11

Table S5808. Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MON2 MUTATED	0	5	3	1
MON2 WILD-TYPE	71	71	31	62

Figure S1974. Get High-res Image Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MON2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.51

Table S5809. Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MON2 MUTATED	0	6	2	4	1
MON2 WILD-TYPE	16	56	49	61	54

'MON2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.012

Table S5810. Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MON2 MUTATED	0	7	3	3
MON2 WILD-TYPE	98	37	47	54

Figure S1975. Get High-res Image Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MON2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 0.15

Table S5811. Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MON2 MUTATED	7	3	1	1	0
MON2 WILD-TYPE	55	56	39	36	59

Figure S1976. Get High-res Image Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MON2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.49

Table S5812. Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MON2 MUTATED	3	2	7
MON2 WILD-TYPE	103	52	90

'MON2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.1

Table S5813. Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MON2 MUTATED	10	4	0
MON2 WILD-TYPE	113	91	71

Figure S1977. Get High-res Image Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MON2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.14

Table S5814. Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MON2 MUTATED	9	5	0
MON2 WILD-TYPE	148	58	69

Figure S1978. Get High-res Image Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MON2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.69

Table S5815. Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MON2 MUTATED	2	1	4	0	0	2
MON2 WILD-TYPE	31	18	55	39	16	43

'MON2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.48

Table S5816. Gene #591: 'MON2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MON2 MUTATED	2	1	4	1	1	0
MON2 WILD-TYPE	45	38	31	31	22	35

'FAAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.6

Table S5817. Gene #592: 'FAAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAAH MUTATED	0	4	0	0	0
FAAH WILD-TYPE	79	122	27	43	12

'FAAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.66

Table S5818. Gene #592: 'FAAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAAH MUTATED	0	1	1	1
FAAH WILD-TYPE	71	75	33	62

'FAAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 0.97

Table S5819. Gene #592: 'FAAH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FAAH MUTATED	0	1	0	2	1
FAAH WILD-TYPE	16	61	51	63	54

'FAAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S5820. Gene #592: 'FAAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FAAH MUTATED	0	1	1	2
FAAH WILD-TYPE	98	43	49	55

'FAAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.66

Table S5821. Gene #592: 'FAAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FAAH MUTATED	1	2	0	0	0
FAAH WILD-TYPE	61	57	40	37	59

'FAAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5822. Gene #592: 'FAAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FAAH MUTATED	1	1	1
FAAH WILD-TYPE	105	53	96

'FAAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.77

Table S5823. Gene #592: 'FAAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FAAH MUTATED	2	2	0
FAAH WILD-TYPE	121	93	71

'FAAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5824. Gene #592: 'FAAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FAAH MUTATED	2	1	1
FAAH WILD-TYPE	155	62	68

'BTNL8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 0.98

Table S5825. Gene #593: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BTNL8 MUTATED	1	4	0	1	0
BTNL8 WILD-TYPE	78	122	27	42	12

'BTNL8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.83

Table S5826. Gene #593: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BTNL8 MUTATED	2	1	0	2
BTNL8 WILD-TYPE	69	75	34	61

'BTNL8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S5827. Gene #593: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BTNL8 MUTATED	1	2	2	0	0
BTNL8 WILD-TYPE	15	60	49	65	55

'BTNL8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 0.8

Table S5828. Gene #593: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BTNL8 MUTATED	3	1	1	0
BTNL8 WILD-TYPE	95	43	49	57

'BTNL8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 0.22

Table S5829. Gene #593: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BTNL8 MUTATED	4	0	0	0	2
BTNL8 WILD-TYPE	58	59	40	37	57

'BTNL8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.75

Table S5830. Gene #593: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BTNL8 MUTATED	3	0	3
BTNL8 WILD-TYPE	103	54	94

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S5831. Gene #593: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BTNL8 MUTATED	4	0	2
BTNL8 WILD-TYPE	119	95	69

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 0.91

Table S5832. Gene #593: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BTNL8 MUTATED	3	1	2
BTNL8 WILD-TYPE	154	62	67

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.958 (Fisher's exact test), Q value = 0.99

Table S5833. Gene #593: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BTNL8 MUTATED	0	0	2	1	0	1
BTNL8 WILD-TYPE	33	19	57	38	16	44

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.68

Table S5834. Gene #593: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BTNL8 MUTATED	1	0	2	0	0	1
BTNL8 WILD-TYPE	46	39	33	32	23	34

'MAP1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.53

Table S5835. Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAP1A MUTATED	2	10	2	1	0
MAP1A WILD-TYPE	77	116	25	42	12

'MAP1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.14

Table S5836. Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAP1A MUTATED	1	8	1	1
MAP1A WILD-TYPE	70	68	33	62

Figure S1979. Get High-res Image Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.17

Table S5837. Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MAP1A MUTATED	2	4	3	0	5
MAP1A WILD-TYPE	14	58	48	65	50

'MAP1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00298 (Fisher's exact test), Q value = 0.034

Table S5838. Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MAP1A MUTATED	4	8	1	1
MAP1A WILD-TYPE	94	36	49	56

Figure S1980. Get High-res Image Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAP1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 0.15

Table S5839. Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MAP1A MUTATED	7	0	3	2	2
MAP1A WILD-TYPE	55	59	37	35	57

Figure S1981. Get High-res Image Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAP1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.084

Table S5840. Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MAP1A MUTATED	4	0	10
MAP1A WILD-TYPE	102	54	87

Figure S1982. Get High-res Image Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAP1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.068

Table S5841. Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MAP1A MUTATED	12	1	2
MAP1A WILD-TYPE	111	94	69

Figure S1983. Get High-res Image Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAP1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.06 (Fisher's exact test), Q value = 0.17

Table S5842. Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MAP1A MUTATED	12	0	3
MAP1A WILD-TYPE	145	63	66

'MAP1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.41

Table S5843. Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MAP1A MUTATED	0	1	5	4	0	1
MAP1A WILD-TYPE	33	18	54	35	16	44

'MAP1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.14

Table S5844. Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MAP1A MUTATED	4	0	5	0	1	1
MAP1A WILD-TYPE	43	39	30	32	22	34

Figure S1984. Get High-res Image Gene #594: 'MAP1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA1539 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.37

Table S5845. Gene #595: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1539 MUTATED	0	5	1	0	0
KIAA1539 WILD-TYPE	79	121	26	43	12

'KIAA1539 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.099

Table S5846. Gene #595: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1539 MUTATED	0	5	1	0
KIAA1539 WILD-TYPE	71	71	33	63

Figure S1985. Get High-res Image Gene #595: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1539 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.71

Table S5847. Gene #595: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIAA1539 MUTATED	0	2	1	0	2
KIAA1539 WILD-TYPE	16	60	50	65	53

'KIAA1539 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0097 (Fisher's exact test), Q value = 0.065

Table S5848. Gene #595: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIAA1539 MUTATED	0	3	2	0
KIAA1539 WILD-TYPE	98	41	48	57

Figure S1986. Get High-res Image Gene #595: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1539 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00676 (Fisher's exact test), Q value = 0.054

Table S5849. Gene #595: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIAA1539 MUTATED	5	0	0	0	0
KIAA1539 WILD-TYPE	57	59	40	37	59

Figure S1987. Get High-res Image Gene #595: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1539 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.37

Table S5850. Gene #595: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIAA1539 MUTATED	1	0	4
KIAA1539 WILD-TYPE	105	54	93

'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.69

Table S5851. Gene #595: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIAA1539 MUTATED	4	1	1
KIAA1539 WILD-TYPE	119	94	70

'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S5852. Gene #595: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIAA1539 MUTATED	6	0	0
KIAA1539 WILD-TYPE	151	63	69

'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.57

Table S5853. Gene #595: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIAA1539 MUTATED	1	0	2	3	0	0
KIAA1539 WILD-TYPE	32	19	57	36	16	45

'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.36

Table S5854. Gene #595: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIAA1539 MUTATED	3	0	2	0	1	0
KIAA1539 WILD-TYPE	44	39	33	32	22	35

'CEACAM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.37

Table S5855. Gene #596: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CEACAM3 MUTATED	0	5	1	0	0
CEACAM3 WILD-TYPE	79	121	26	43	12

'CEACAM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.33

Table S5856. Gene #596: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CEACAM3 MUTATED	0	4	1	1
CEACAM3 WILD-TYPE	71	72	33	62

'CEACAM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.48

Table S5857. Gene #596: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CEACAM3 MUTATED	1	2	1	0	2
CEACAM3 WILD-TYPE	15	60	50	65	53

'CEACAM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.36

Table S5858. Gene #596: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CEACAM3 MUTATED	1	3	1	1
CEACAM3 WILD-TYPE	97	41	49	56

'CEACAM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.12

Table S5859. Gene #596: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CEACAM3 MUTATED	4	0	0	2	0
CEACAM3 WILD-TYPE	58	59	40	35	59

Figure S1988. Get High-res Image Gene #596: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CEACAM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.41

Table S5860. Gene #596: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CEACAM3 MUTATED	2	0	4
CEACAM3 WILD-TYPE	104	54	93

'CEACAM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 0.19

Table S5861. Gene #596: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CEACAM3 MUTATED	6	1	0
CEACAM3 WILD-TYPE	117	94	71

'CEACAM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0692 (Fisher's exact test), Q value = 0.19

Table S5862. Gene #596: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CEACAM3 MUTATED	7	0	0
CEACAM3 WILD-TYPE	150	63	69

'CEACAM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.72

Table S5863. Gene #596: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CEACAM3 MUTATED	1	1	3	1	0	0
CEACAM3 WILD-TYPE	32	18	56	38	16	45

'CEACAM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.25

Table S5864. Gene #596: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CEACAM3 MUTATED	3	0	1	0	2	0
CEACAM3 WILD-TYPE	44	39	34	32	21	35

'NUPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.68

Table S5865. Gene #597: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NUPL2 MUTATED	1	5	1	0	0
NUPL2 WILD-TYPE	78	121	26	43	12

'NUPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.41

Table S5866. Gene #597: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NUPL2 MUTATED	1	2	2	0
NUPL2 WILD-TYPE	70	74	32	63

'NUPL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.2

Table S5867. Gene #597: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NUPL2 MUTATED	0	2	0	0	4
NUPL2 WILD-TYPE	16	60	51	65	51

'NUPL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.37

Table S5868. Gene #597: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NUPL2 MUTATED	1	3	1	1
NUPL2 WILD-TYPE	97	41	49	56

'NUPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S5869. Gene #597: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NUPL2 MUTATED	3	0	1	2	0
NUPL2 WILD-TYPE	59	59	39	35	59

'NUPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.41

Table S5870. Gene #597: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NUPL2 MUTATED	2	0	4
NUPL2 WILD-TYPE	104	54	93

'NUPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.18

Table S5871. Gene #597: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NUPL2 MUTATED	6	1	0
NUPL2 WILD-TYPE	117	94	71

'NUPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0675 (Fisher's exact test), Q value = 0.19

Table S5872. Gene #597: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NUPL2 MUTATED	7	0	0
NUPL2 WILD-TYPE	150	63	69

'NUPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.34

Table S5873. Gene #597: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NUPL2 MUTATED	0	2	2	1	0	0
NUPL2 WILD-TYPE	33	17	57	38	16	45

'NUPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.091

Table S5874. Gene #597: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NUPL2 MUTATED	1	0	0	1	3	0
NUPL2 WILD-TYPE	46	39	35	31	20	35

Figure S1989. Get High-res Image Gene #597: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WAPAL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.11

Table S5875. Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WAPAL MUTATED	0	8	3	1	1
WAPAL WILD-TYPE	79	118	24	42	11

Figure S1990. Get High-res Image Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WAPAL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.19

Table S5876. Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WAPAL MUTATED	0	6	2	3
WAPAL WILD-TYPE	71	70	32	60

'WAPAL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.46

Table S5877. Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WAPAL MUTATED	2	4	2	1	3
WAPAL WILD-TYPE	14	58	49	64	52

'WAPAL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.51

Table S5878. Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WAPAL MUTATED	4	4	3	1
WAPAL WILD-TYPE	94	40	47	56

'WAPAL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.092

Table S5879. Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WAPAL MUTATED	8	2	2	1	0
WAPAL WILD-TYPE	54	57	38	36	59

Figure S1991. Get High-res Image Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WAPAL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.39

Table S5880. Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WAPAL MUTATED	3	2	8
WAPAL WILD-TYPE	103	52	89

'WAPAL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00424 (Fisher's exact test), Q value = 0.041

Table S5881. Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WAPAL MUTATED	11	2	0
WAPAL WILD-TYPE	112	93	71

Figure S1992. Get High-res Image Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WAPAL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.14

Table S5882. Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WAPAL MUTATED	11	2	0
WAPAL WILD-TYPE	146	61	69

Figure S1993. Get High-res Image Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WAPAL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.69

Table S5883. Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WAPAL MUTATED	0	1	5	2	0	2
WAPAL WILD-TYPE	33	18	54	37	16	43

'WAPAL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00735 (Fisher's exact test), Q value = 0.056

Table S5884. Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WAPAL MUTATED	3	1	6	0	0	0
WAPAL WILD-TYPE	44	38	29	32	23	35

Figure S1994. Get High-res Image Gene #598: 'WAPAL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BTRC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.17

Table S5885. Gene #599: 'BTRC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BTRC MUTATED	0	8	0	0	0
BTRC WILD-TYPE	79	118	27	43	12

'BTRC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 0.83

Table S5886. Gene #599: 'BTRC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BTRC MUTATED	1	3	1	1
BTRC WILD-TYPE	70	73	33	62

'BTRC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.71

Table S5887. Gene #599: 'BTRC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BTRC MUTATED	0	3	3	1	1
BTRC WILD-TYPE	16	59	48	64	54

'BTRC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0061

Table S5888. Gene #599: 'BTRC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BTRC MUTATED	0	6	0	2
BTRC WILD-TYPE	98	38	50	55

Figure S1995. Get High-res Image Gene #599: 'BTRC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BTRC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.42

Table S5889. Gene #599: 'BTRC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BTRC MUTATED	4	1	1	1	0
BTRC WILD-TYPE	58	58	39	36	59

'BTRC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S5890. Gene #599: 'BTRC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BTRC MUTATED	1	1	5
BTRC WILD-TYPE	105	53	92

'BTRC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.13

Table S5891. Gene #599: 'BTRC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BTRC MUTATED	7	1	0
BTRC WILD-TYPE	116	94	71

Figure S1996. Get High-res Image Gene #599: 'BTRC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BTRC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.31

Table S5892. Gene #599: 'BTRC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BTRC MUTATED	7	1	0
BTRC WILD-TYPE	150	62	69

'BTRC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 0.96

Table S5893. Gene #599: 'BTRC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BTRC MUTATED	1	1	1	1	0	1
BTRC WILD-TYPE	32	18	58	38	16	44

'BTRC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.3

Table S5894. Gene #599: 'BTRC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BTRC MUTATED	2	0	1	0	2	0
BTRC WILD-TYPE	45	39	34	32	21	35

'GPC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.75

Table S5895. Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPC4 MUTATED	1	6	0	1	0
GPC4 WILD-TYPE	78	120	27	42	12

'GPC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 0.15

Table S5896. Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPC4 MUTATED	1	6	1	0
GPC4 WILD-TYPE	70	70	33	63

Figure S1997. Get High-res Image Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.44

Table S5897. Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GPC4 MUTATED	0	3	3	1	0
GPC4 WILD-TYPE	16	59	48	64	55

'GPC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.29

Table S5898. Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GPC4 MUTATED	2	3	2	0
GPC4 WILD-TYPE	96	41	48	57

'GPC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.12

Table S5899. Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GPC4 MUTATED	4	0	2	3	0
GPC4 WILD-TYPE	58	59	38	34	59

Figure S1998. Get High-res Image Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.0093

Table S5900. Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GPC4 MUTATED	0	0	9
GPC4 WILD-TYPE	106	54	88

Figure S1999. Get High-res Image Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.072

Table S5901. Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GPC4 MUTATED	8	0	1
GPC4 WILD-TYPE	115	95	70

Figure S2000. Get High-res Image Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.099

Table S5902. Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GPC4 MUTATED	9	0	0
GPC4 WILD-TYPE	148	63	69

Figure S2001. Get High-res Image Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S5903. Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GPC4 MUTATED	2	2	1	3	0	0
GPC4 WILD-TYPE	31	17	58	36	16	45

'GPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S5904. Gene #600: 'GPC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GPC4 MUTATED	5	0	1	1	1	0
GPC4 WILD-TYPE	42	39	34	31	22	35

'GANAB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.11

Table S5905. Gene #601: 'GANAB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GANAB MUTATED	0	10	1	0	0
GANAB WILD-TYPE	79	116	26	43	12

Figure S2002. Get High-res Image Gene #601: 'GANAB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GANAB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00572 (Fisher's exact test), Q value = 0.049

Table S5906. Gene #601: 'GANAB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GANAB MUTATED	0	8	1	1
GANAB WILD-TYPE	71	68	33	62

Figure S2003. Get High-res Image Gene #601: 'GANAB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GANAB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.56

Table S5907. Gene #601: 'GANAB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GANAB MUTATED	1	2	4	1	3
GANAB WILD-TYPE	15	60	47	64	52

'GANAB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0034 (Fisher's exact test), Q value = 0.036

Table S5908. Gene #601: 'GANAB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GANAB MUTATED	2	7	1	1
GANAB WILD-TYPE	96	37	49	56

Figure S2004. Get High-res Image Gene #601: 'GANAB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GANAB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.071

Table S5909. Gene #601: 'GANAB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GANAB MUTATED	7	2	0	2	0
GANAB WILD-TYPE	55	57	40	35	59

Figure S2005. Get High-res Image Gene #601: 'GANAB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GANAB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.34

Table S5910. Gene #601: 'GANAB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GANAB MUTATED	2	2	7
GANAB WILD-TYPE	104	52	90

'GANAB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S5911. Gene #601: 'GANAB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GANAB MUTATED	8	2	1
GANAB WILD-TYPE	115	93	70

'GANAB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S5912. Gene #601: 'GANAB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GANAB MUTATED	9	2	0
GANAB WILD-TYPE	148	61	69

'GANAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.74

Table S5913. Gene #601: 'GANAB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GANAB MUTATED	1	2	4	2	0	1
GANAB WILD-TYPE	32	17	55	37	16	44

'GANAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 0.68

Table S5914. Gene #601: 'GANAB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GANAB MUTATED	3	1	3	2	1	0
GANAB WILD-TYPE	44	38	32	30	22	35

'RNMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S5915. Gene #602: 'RNMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RNMT MUTATED	0	7	1	0	0
RNMT WILD-TYPE	79	119	26	43	12

'RNMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.37

Table S5916. Gene #602: 'RNMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RNMT MUTATED	0	3	2	2
RNMT WILD-TYPE	71	73	32	61

'RNMT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.41

Table S5917. Gene #602: 'RNMT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RNMT MUTATED	1	3	1	0	2
RNMT WILD-TYPE	15	59	50	65	53

'RNMT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.02 (Fisher's exact test), Q value = 0.095

Table S5918. Gene #602: 'RNMT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RNMT MUTATED	1	4	2	0
RNMT WILD-TYPE	97	40	48	57

Figure S2006. Get High-res Image Gene #602: 'RNMT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RNMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.089

Table S5919. Gene #602: 'RNMT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RNMT MUTATED	6	1	0	1	0
RNMT WILD-TYPE	56	58	40	36	59

Figure S2007. Get High-res Image Gene #602: 'RNMT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RNMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.51

Table S5920. Gene #602: 'RNMT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RNMT MUTATED	4	0	4
RNMT WILD-TYPE	102	54	93

'RNMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00264 (Fisher's exact test), Q value = 0.032

Table S5921. Gene #602: 'RNMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RNMT MUTATED	8	0	0
RNMT WILD-TYPE	115	95	71

Figure S2008. Get High-res Image Gene #602: 'RNMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RNMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S5922. Gene #602: 'RNMT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RNMT MUTATED	7	1	0
RNMT WILD-TYPE	150	62	69

'RNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S5923. Gene #602: 'RNMT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RNMT MUTATED	1	1	4	1	0	0
RNMT WILD-TYPE	32	18	55	38	16	45

'RNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0738 (Fisher's exact test), Q value = 0.2

Table S5924. Gene #602: 'RNMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RNMT MUTATED	1	0	4	1	1	0
RNMT WILD-TYPE	46	39	31	31	22	35

'IGSF21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.54

Table S5925. Gene #603: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IGSF21 MUTATED	0	2	1	0	0
IGSF21 WILD-TYPE	79	124	26	43	12

'IGSF21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.72

Table S5926. Gene #603: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IGSF21 MUTATED	0	2	0	1
IGSF21 WILD-TYPE	71	74	34	62

'IGSF21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.45

Table S5927. Gene #603: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IGSF21 MUTATED	2	0	1	0	0
IGSF21 WILD-TYPE	60	59	39	37	59

'IGSF21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.71

Table S5928. Gene #603: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IGSF21 MUTATED	1	0	2
IGSF21 WILD-TYPE	105	54	95

'IGSF21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S5929. Gene #603: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IGSF21 MUTATED	3	0	0
IGSF21 WILD-TYPE	120	95	71

'IGSF21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 0.85

Table S5930. Gene #603: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IGSF21 MUTATED	2	1	0
IGSF21 WILD-TYPE	155	62	69

'IGSF21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.51

Table S5931. Gene #603: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IGSF21 MUTATED	0	1	2	0	0	0
IGSF21 WILD-TYPE	33	18	57	39	16	45

'IGSF21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.51

Table S5932. Gene #603: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IGSF21 MUTATED	1	0	2	0	0	0
IGSF21 WILD-TYPE	46	39	33	32	23	35

'EPHB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.5

Table S5933. Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EPHB6 MUTATED	1	7	1	1	1
EPHB6 WILD-TYPE	78	119	26	42	11

'EPHB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.14

Table S5934. Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EPHB6 MUTATED	1	8	1	1
EPHB6 WILD-TYPE	70	68	33	62

Figure S2009. Get High-res Image Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPHB6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.099

Table S5935. Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EPHB6 MUTATED	0	7	1	0	2
EPHB6 WILD-TYPE	16	55	50	65	53

Figure S2010. Get High-res Image Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EPHB6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0055

Table S5936. Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EPHB6 MUTATED	0	4	6	0
EPHB6 WILD-TYPE	98	40	44	57

Figure S2011. Get High-res Image Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPHB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00585 (Fisher's exact test), Q value = 0.049

Table S5937. Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EPHB6 MUTATED	7	0	0	2	1
EPHB6 WILD-TYPE	55	59	40	35	58

Figure S2012. Get High-res Image Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPHB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00258 (Fisher's exact test), Q value = 0.032

Table S5938. Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EPHB6 MUTATED	1	0	9
EPHB6 WILD-TYPE	105	54	88

Figure S2013. Get High-res Image Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.52

Table S5939. Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EPHB6 MUTATED	7	2	2
EPHB6 WILD-TYPE	116	93	69

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.43

Table S5940. Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EPHB6 MUTATED	9	1	1
EPHB6 WILD-TYPE	148	62	68

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.55

Table S5941. Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EPHB6 MUTATED	2	1	4	3	0	0
EPHB6 WILD-TYPE	31	18	55	36	16	45

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S5942. Gene #604: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EPHB6 MUTATED	4	0	3	1	2	0
EPHB6 WILD-TYPE	43	39	32	31	21	35

'PNPLA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.5

Table S5943. Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PNPLA7 MUTATED	3	11	1	3	2
PNPLA7 WILD-TYPE	76	115	26	40	10

'PNPLA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00759 (Fisher's exact test), Q value = 0.057

Table S5944. Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PNPLA7 MUTATED	3	9	4	0
PNPLA7 WILD-TYPE	68	67	30	63

Figure S2014. Get High-res Image Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PNPLA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 0.22

Table S5945. Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PNPLA7 MUTATED	1	5	3	0	5
PNPLA7 WILD-TYPE	15	57	48	65	50

'PNPLA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0947 (Fisher's exact test), Q value = 0.23

Table S5946. Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PNPLA7 MUTATED	3	6	3	2
PNPLA7 WILD-TYPE	95	38	47	55

'PNPLA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0042 (Fisher's exact test), Q value = 0.041

Table S5947. Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PNPLA7 MUTATED	10	0	4	3	2
PNPLA7 WILD-TYPE	52	59	36	34	57

Figure S2015. Get High-res Image Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PNPLA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00429 (Fisher's exact test), Q value = 0.041

Table S5948. Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PNPLA7 MUTATED	4	1	14
PNPLA7 WILD-TYPE	102	53	83

Figure S2016. Get High-res Image Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PNPLA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.15

Table S5949. Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PNPLA7 MUTATED	14	4	2
PNPLA7 WILD-TYPE	109	91	69

Figure S2017. Get High-res Image Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PNPLA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0492 (Fisher's exact test), Q value = 0.16

Table S5950. Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PNPLA7 MUTATED	16	1	3
PNPLA7 WILD-TYPE	141	62	66

Figure S2018. Get High-res Image Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PNPLA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.21

Table S5951. Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PNPLA7 MUTATED	1	3	2	6	0	2
PNPLA7 WILD-TYPE	32	16	57	33	16	43

'PNPLA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.075

Table S5952. Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PNPLA7 MUTATED	7	1	0	1	4	1
PNPLA7 WILD-TYPE	40	38	35	31	19	34

Figure S2019. Get High-res Image Gene #605: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NAA16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.38

Table S5953. Gene #606: 'NAA16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NAA16 MUTATED	1	6	0	0	1
NAA16 WILD-TYPE	78	120	27	43	11

'NAA16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.49

Table S5954. Gene #606: 'NAA16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NAA16 MUTATED	0	3	1	1
NAA16 WILD-TYPE	71	73	33	62

'NAA16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.49

Table S5955. Gene #606: 'NAA16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NAA16 MUTATED	0	3	2	0	3
NAA16 WILD-TYPE	16	59	49	65	52

'NAA16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0813 (Fisher's exact test), Q value = 0.21

Table S5956. Gene #606: 'NAA16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NAA16 MUTATED	3	4	1	0
NAA16 WILD-TYPE	95	40	49	57

'NAA16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.18

Table S5957. Gene #606: 'NAA16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NAA16 MUTATED	5	0	1	0	1
NAA16 WILD-TYPE	57	59	39	37	58

'NAA16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.57

Table S5958. Gene #606: 'NAA16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NAA16 MUTATED	3	0	4
NAA16 WILD-TYPE	103	54	93

'NAA16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.1

Table S5959. Gene #606: 'NAA16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NAA16 MUTATED	7	0	1
NAA16 WILD-TYPE	116	95	70

Figure S2020. Get High-res Image Gene #606: 'NAA16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NAA16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 0.94

Table S5960. Gene #606: 'NAA16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NAA16 MUTATED	5	1	2
NAA16 WILD-TYPE	152	62	67

'NAA16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.35

Table S5961. Gene #606: 'NAA16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NAA16 MUTATED	2	0	4	0	0	0
NAA16 WILD-TYPE	31	19	55	39	16	45

'NAA16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.52

Table S5962. Gene #606: 'NAA16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NAA16 MUTATED	1	0	3	1	0	1
NAA16 WILD-TYPE	46	39	32	31	23	34

'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00257 (Fisher's exact test), Q value = 0.032

Table S5963. Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NF1 MUTATED	2	16	5	0	1
NF1 WILD-TYPE	77	110	22	43	11

Figure S2021. Get High-res Image Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0077 (Fisher's exact test), Q value = 0.057

Table S5964. Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NF1 MUTATED	1	9	4	1
NF1 WILD-TYPE	70	67	30	62

Figure S2022. Get High-res Image Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0977 (Fisher's exact test), Q value = 0.23

Table S5965. Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NF1 MUTATED	1	8	6	1	5
NF1 WILD-TYPE	15	54	45	64	50

'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 7e-04 (Fisher's exact test), Q value = 0.014

Table S5966. Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NF1 MUTATED	4	11	4	2
NF1 WILD-TYPE	94	33	46	55

Figure S2023. Get High-res Image Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.36

Table S5967. Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NF1 MUTATED	8	3	3	5	2
NF1 WILD-TYPE	54	56	37	32	57

'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 0.11

Table S5968. Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NF1 MUTATED	5	2	14
NF1 WILD-TYPE	101	52	83

Figure S2024. Get High-res Image Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 0.095

Table S5969. Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NF1 MUTATED	17	4	3
NF1 WILD-TYPE	106	91	68

Figure S2025. Get High-res Image Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.14

Table S5970. Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NF1 MUTATED	19	3	2
NF1 WILD-TYPE	138	60	67

Figure S2026. Get High-res Image Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.63

Table S5971. Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NF1 MUTATED	2	2	6	2	0	1
NF1 WILD-TYPE	31	17	53	37	16	44

'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S5972. Gene #607: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NF1 MUTATED	3	1	3	2	4	0
NF1 WILD-TYPE	44	38	32	30	19	35

'GALK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.53

Table S5973. Gene #608: 'GALK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GALK1 MUTATED	0	2	1	0	0
GALK1 WILD-TYPE	79	124	26	43	12

'GALK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.53

Table S5974. Gene #608: 'GALK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GALK1 MUTATED	0	1	0	0	2
GALK1 WILD-TYPE	16	61	51	65	53

'GALK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.15

Table S5975. Gene #608: 'GALK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GALK1 MUTATED	0	2	1	0
GALK1 WILD-TYPE	98	42	49	57

Figure S2027. Get High-res Image Gene #608: 'GALK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GALK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.43

Table S5976. Gene #608: 'GALK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GALK1 MUTATED	1	1	0	2	0
GALK1 WILD-TYPE	61	58	40	35	59

'GALK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.57

Table S5977. Gene #608: 'GALK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GALK1 MUTATED	1	0	3
GALK1 WILD-TYPE	105	54	94

'GALK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0897 (Fisher's exact test), Q value = 0.22

Table S5978. Gene #608: 'GALK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GALK1 MUTATED	4	0	0
GALK1 WILD-TYPE	119	95	71

'GALK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.56

Table S5979. Gene #608: 'GALK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GALK1 MUTATED	4	0	0
GALK1 WILD-TYPE	153	63	69

'CHGB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.75

Table S5980. Gene #609: 'CHGB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CHGB MUTATED	2	7	2	1	0
CHGB WILD-TYPE	77	119	25	42	12

'CHGB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.24

Table S5981. Gene #609: 'CHGB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CHGB MUTATED	3	6	2	0
CHGB WILD-TYPE	68	70	32	63

'CHGB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0587 (Fisher's exact test), Q value = 0.17

Table S5982. Gene #609: 'CHGB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CHGB MUTATED	2	2	3	0	4
CHGB WILD-TYPE	14	60	48	65	51

'CHGB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.08

Table S5983. Gene #609: 'CHGB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CHGB MUTATED	3	6	0	2
CHGB WILD-TYPE	95	38	50	55

Figure S2028. Get High-res Image Gene #609: 'CHGB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CHGB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.37

Table S5984. Gene #609: 'CHGB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CHGB MUTATED	6	1	2	1	1
CHGB WILD-TYPE	56	58	38	36	58

'CHGB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S5985. Gene #609: 'CHGB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CHGB MUTATED	2	2	7
CHGB WILD-TYPE	104	52	90

'CHGB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.26

Table S5986. Gene #609: 'CHGB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CHGB MUTATED	8	1	3
CHGB WILD-TYPE	115	94	68

'CHGB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.61

Table S5987. Gene #609: 'CHGB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CHGB MUTATED	7	1	4
CHGB WILD-TYPE	150	62	65

'CHGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 0.82

Table S5988. Gene #609: 'CHGB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CHGB MUTATED	3	1	4	2	0	1
CHGB WILD-TYPE	30	18	55	37	16	44

'CHGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.28

Table S5989. Gene #609: 'CHGB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CHGB MUTATED	3	0	3	3	2	0
CHGB WILD-TYPE	44	39	32	29	21	35

'TCF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 0.16

Table S5990. Gene #610: 'TCF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TCF7 MUTATED	0	5	2	0	1
TCF7 WILD-TYPE	79	121	25	43	11

Figure S2029. Get High-res Image Gene #610: 'TCF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TCF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 0.89

Table S5991. Gene #610: 'TCF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TCF7 MUTATED	1	3	1	2
TCF7 WILD-TYPE	70	73	33	61

'TCF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.41

Table S5992. Gene #610: 'TCF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TCF7 MUTATED	1	3	1	0	2
TCF7 WILD-TYPE	15	59	50	65	53

'TCF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S5993. Gene #610: 'TCF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TCF7 MUTATED	2	2	3	0
TCF7 WILD-TYPE	96	42	47	57

'TCF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.076

Table S5994. Gene #610: 'TCF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TCF7 MUTATED	5	0	1	0	0
TCF7 WILD-TYPE	57	59	39	37	59

Figure S2030. Get High-res Image Gene #610: 'TCF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TCF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S5995. Gene #610: 'TCF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TCF7 MUTATED	1	0	5
TCF7 WILD-TYPE	105	54	92

'TCF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.37

Table S5996. Gene #610: 'TCF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TCF7 MUTATED	6	1	1
TCF7 WILD-TYPE	117	94	70

'TCF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 0.86

Table S5997. Gene #610: 'TCF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TCF7 MUTATED	5	2	1
TCF7 WILD-TYPE	152	61	68

'TCF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.87

Table S5998. Gene #610: 'TCF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TCF7 MUTATED	0	0	3	2	0	1
TCF7 WILD-TYPE	33	19	56	37	16	44

'TCF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.7

Table S5999. Gene #610: 'TCF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TCF7 MUTATED	1	1	2	2	0	0
TCF7 WILD-TYPE	46	38	33	30	23	35

'PIAS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.09

Table S6000. Gene #611: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIAS3 MUTATED	0	3	0	0	2
PIAS3 WILD-TYPE	79	123	27	43	10

Figure S2031. Get High-res Image Gene #611: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIAS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.09

Table S6001. Gene #611: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIAS3 MUTATED	0	0	2	1
PIAS3 WILD-TYPE	71	76	32	62

Figure S2032. Get High-res Image Gene #611: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIAS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S6002. Gene #611: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PIAS3 MUTATED	0	1	0	0	3
PIAS3 WILD-TYPE	16	61	51	65	52

'PIAS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.78

Table S6003. Gene #611: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PIAS3 MUTATED	3	0	0	1
PIAS3 WILD-TYPE	95	44	50	56

'PIAS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.1

Table S6004. Gene #611: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PIAS3 MUTATED	4	0	0	0	0
PIAS3 WILD-TYPE	58	59	40	37	59

Figure S2033. Get High-res Image Gene #611: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIAS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.57

Table S6005. Gene #611: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PIAS3 MUTATED	1	0	3
PIAS3 WILD-TYPE	105	54	94

'PIAS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.12

Table S6006. Gene #611: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PIAS3 MUTATED	5	0	0
PIAS3 WILD-TYPE	118	95	71

Figure S2034. Get High-res Image Gene #611: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PIAS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.4

Table S6007. Gene #611: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PIAS3 MUTATED	5	0	0
PIAS3 WILD-TYPE	152	63	69

'SLC12A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.46

Table S6008. Gene #612: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC12A1 MUTATED	3	14	2	2	0
SLC12A1 WILD-TYPE	76	112	25	41	12

'SLC12A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00888 (Fisher's exact test), Q value = 0.062

Table S6009. Gene #612: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC12A1 MUTATED	2	12	1	2
SLC12A1 WILD-TYPE	69	64	33	61

Figure S2035. Get High-res Image Gene #612: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC12A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 0.94

Table S6010. Gene #612: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC12A1 MUTATED	1	4	4	4	6
SLC12A1 WILD-TYPE	15	58	47	61	49

'SLC12A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0496 (Fisher's exact test), Q value = 0.16

Table S6011. Gene #612: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC12A1 MUTATED	4	8	3	4
SLC12A1 WILD-TYPE	94	36	47	53

Figure S2036. Get High-res Image Gene #612: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC12A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.14

Table S6012. Gene #612: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC12A1 MUTATED	8	4	0	5	2
SLC12A1 WILD-TYPE	54	55	40	32	57

Figure S2037. Get High-res Image Gene #612: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC12A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S6013. Gene #612: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC12A1 MUTATED	4	5	10
SLC12A1 WILD-TYPE	102	49	87

'SLC12A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.39

Table S6014. Gene #612: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC12A1 MUTATED	11	8	2
SLC12A1 WILD-TYPE	112	87	69

'SLC12A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.72

Table S6015. Gene #612: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC12A1 MUTATED	13	5	3
SLC12A1 WILD-TYPE	144	58	66

'SLC12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S6016. Gene #612: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC12A1 MUTATED	3	4	2	4	0	3
SLC12A1 WILD-TYPE	30	15	57	35	16	42

'SLC12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.64

Table S6017. Gene #612: 'SLC12A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC12A1 MUTATED	6	2	1	2	3	2
SLC12A1 WILD-TYPE	41	37	34	30	20	33

'IFNA17 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6018. Gene #613: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IFNA17 MUTATED	1	2	0	1	0
IFNA17 WILD-TYPE	78	124	27	42	12

'IFNA17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.6

Table S6019. Gene #613: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IFNA17 MUTATED	2	0	0	1
IFNA17 WILD-TYPE	69	76	34	62

'IFNA17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0681 (Fisher's exact test), Q value = 0.19

Table S6020. Gene #613: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IFNA17 MUTATED	1	0	1	0	2
IFNA17 WILD-TYPE	15	62	50	65	53

'IFNA17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.54

Table S6021. Gene #613: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IFNA17 MUTATED	3	1	0	0
IFNA17 WILD-TYPE	95	43	50	57

'IFNA17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.79

Table S6022. Gene #613: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IFNA17 MUTATED	2	0	1	0	1
IFNA17 WILD-TYPE	60	59	39	37	58

'IFNA17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.57

Table S6023. Gene #613: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IFNA17 MUTATED	1	0	3
IFNA17 WILD-TYPE	105	54	94

'IFNA17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.5

Table S6024. Gene #613: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IFNA17 MUTATED	3	0	1
IFNA17 WILD-TYPE	120	95	70

'IFNA17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.64

Table S6025. Gene #613: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IFNA17 MUTATED	2	0	2
IFNA17 WILD-TYPE	155	63	67

'IFNA17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 0.92

Table S6026. Gene #613: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IFNA17 MUTATED	0	0	2	0	0	1
IFNA17 WILD-TYPE	33	19	57	39	16	44

'IFNA17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 0.92

Table S6027. Gene #613: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IFNA17 MUTATED	1	0	1	0	0	1
IFNA17 WILD-TYPE	46	39	34	32	23	34

'SPATA5L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.68

Table S6028. Gene #614: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SPATA5L1 MUTATED	1	5	1	0	0
SPATA5L1 WILD-TYPE	78	121	26	43	12

'SPATA5L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.0089

Table S6029. Gene #614: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SPATA5L1 MUTATED	0	2	5	0
SPATA5L1 WILD-TYPE	71	74	29	63

Figure S2038. Get High-res Image Gene #614: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPATA5L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.57

Table S6030. Gene #614: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SPATA5L1 MUTATED	0	3	1	0	1
SPATA5L1 WILD-TYPE	16	59	50	65	54

'SPATA5L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.066

Table S6031. Gene #614: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SPATA5L1 MUTATED	0	3	2	0
SPATA5L1 WILD-TYPE	98	41	48	57

Figure S2039. Get High-res Image Gene #614: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SPATA5L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00637 (Fisher's exact test), Q value = 0.052

Table S6032. Gene #614: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SPATA5L1 MUTATED	5	0	0	0	0
SPATA5L1 WILD-TYPE	57	59	40	37	59

Figure S2040. Get High-res Image Gene #614: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SPATA5L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.65

Table S6033. Gene #614: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SPATA5L1 MUTATED	2	0	3
SPATA5L1 WILD-TYPE	104	54	94

'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.86

Table S6034. Gene #614: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SPATA5L1 MUTATED	4	2	1
SPATA5L1 WILD-TYPE	119	93	70

'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.54

Table S6035. Gene #614: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SPATA5L1 MUTATED	5	2	0
SPATA5L1 WILD-TYPE	152	61	69

'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S6036. Gene #614: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SPATA5L1 MUTATED	1	0	3	1	0	1
SPATA5L1 WILD-TYPE	32	19	56	38	16	44

'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S6037. Gene #614: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SPATA5L1 MUTATED	0	1	3	1	1	0
SPATA5L1 WILD-TYPE	47	38	32	31	22	35

'SYCP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 0.23

Table S6038. Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SYCP2 MUTATED	3	11	0	0	1
SYCP2 WILD-TYPE	76	115	27	43	11

'SYCP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S6039. Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SYCP2 MUTATED	1	6	0	1
SYCP2 WILD-TYPE	70	70	34	62

'SYCP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0434 (Fisher's exact test), Q value = 0.15

Table S6040. Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SYCP2 MUTATED	1	5	1	0	5
SYCP2 WILD-TYPE	15	57	50	65	50

Figure S2041. Get High-res Image Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SYCP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00279 (Fisher's exact test), Q value = 0.033

Table S6041. Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SYCP2 MUTATED	3	7	2	0
SYCP2 WILD-TYPE	95	37	48	57

Figure S2042. Get High-res Image Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SYCP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.19

Table S6042. Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SYCP2 MUTATED	7	1	1	3	1
SYCP2 WILD-TYPE	55	58	39	34	58

'SYCP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00197 (Fisher's exact test), Q value = 0.027

Table S6043. Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SYCP2 MUTATED	2	0	11
SYCP2 WILD-TYPE	104	54	86

Figure S2043. Get High-res Image Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0051

Table S6044. Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SYCP2 MUTATED	14	0	1
SYCP2 WILD-TYPE	109	95	70

Figure S2044. Get High-res Image Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 0.094

Table S6045. Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SYCP2 MUTATED	13	0	2
SYCP2 WILD-TYPE	144	63	67

Figure S2045. Get High-res Image Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.43

Table S6046. Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SYCP2 MUTATED	2	2	3	1	0	0
SYCP2 WILD-TYPE	31	17	56	38	16	45

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.074 (Fisher's exact test), Q value = 0.2

Table S6047. Gene #615: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SYCP2 MUTATED	5	0	2	1	0	0
SYCP2 WILD-TYPE	42	39	33	31	23	35

'CNGA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.6

Table S6048. Gene #616: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CNGA4 MUTATED	4	12	1	1	0
CNGA4 WILD-TYPE	75	114	26	42	12

'CNGA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.49

Table S6049. Gene #616: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CNGA4 MUTATED	2	7	3	3
CNGA4 WILD-TYPE	69	69	31	60

'CNGA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.53

Table S6050. Gene #616: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CNGA4 MUTATED	1	6	1	3	5
CNGA4 WILD-TYPE	15	56	50	62	50

'CNGA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.08

Table S6051. Gene #616: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CNGA4 MUTATED	3	8	2	3
CNGA4 WILD-TYPE	95	36	48	54

Figure S2046. Get High-res Image Gene #616: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CNGA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.21

Table S6052. Gene #616: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CNGA4 MUTATED	8	1	1	1	3
CNGA4 WILD-TYPE	54	58	39	36	56

'CNGA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.61

Table S6053. Gene #616: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CNGA4 MUTATED	7	1	6
CNGA4 WILD-TYPE	99	53	91

'CNGA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.35

Table S6054. Gene #616: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CNGA4 MUTATED	11	3	4
CNGA4 WILD-TYPE	112	92	67

'CNGA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.64

Table S6055. Gene #616: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CNGA4 MUTATED	12	2	4
CNGA4 WILD-TYPE	145	61	65

'CNGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0996 (Fisher's exact test), Q value = 0.23

Table S6056. Gene #616: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CNGA4 MUTATED	3	3	5	2	2	0
CNGA4 WILD-TYPE	30	16	54	37	14	45

'CNGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.48

Table S6057. Gene #616: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CNGA4 MUTATED	4	0	4	3	1	3
CNGA4 WILD-TYPE	43	39	31	29	22	32

'ACTG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.36

Table S6058. Gene #617: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ACTG2 MUTATED	1	8	0	0	0
ACTG2 WILD-TYPE	78	118	27	43	12

'ACTG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.72

Table S6059. Gene #617: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ACTG2 MUTATED	1	2	1	0
ACTG2 WILD-TYPE	70	74	33	63

'ACTG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 0.14

Table S6060. Gene #617: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ACTG2 MUTATED	0	4	0	0	4
ACTG2 WILD-TYPE	16	58	51	65	51

Figure S2047. Get High-res Image Gene #617: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ACTG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.055 (Fisher's exact test), Q value = 0.17

Table S6061. Gene #617: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ACTG2 MUTATED	2	4	2	0
ACTG2 WILD-TYPE	96	40	48	57

'ACTG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.54

Table S6062. Gene #617: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ACTG2 MUTATED	3	1	2	1	0
ACTG2 WILD-TYPE	59	58	38	36	59

'ACTG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0468 (Fisher's exact test), Q value = 0.15

Table S6063. Gene #617: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ACTG2 MUTATED	1	0	6
ACTG2 WILD-TYPE	105	54	91

Figure S2048. Get High-res Image Gene #617: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ACTG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.07

Table S6064. Gene #617: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ACTG2 MUTATED	8	0	1
ACTG2 WILD-TYPE	115	95	70

Figure S2049. Get High-res Image Gene #617: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ACTG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.4

Table S6065. Gene #617: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ACTG2 MUTATED	7	0	2
ACTG2 WILD-TYPE	150	63	67

'ACTG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.57

Table S6066. Gene #617: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ACTG2 MUTATED	1	1	2	0	0	0
ACTG2 WILD-TYPE	32	18	57	39	16	45

'ACTG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.68

Table S6067. Gene #617: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ACTG2 MUTATED	1	0	2	0	0	1
ACTG2 WILD-TYPE	46	39	33	32	23	34

'FIGNL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.29

Table S6068. Gene #618: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FIGNL1 MUTATED	0	6	2	1	0
FIGNL1 WILD-TYPE	79	120	25	42	12

'FIGNL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0924 (Fisher's exact test), Q value = 0.22

Table S6069. Gene #618: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FIGNL1 MUTATED	0	5	1	1
FIGNL1 WILD-TYPE	71	71	33	62

'FIGNL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.4

Table S6070. Gene #618: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FIGNL1 MUTATED	0	4	0	1	3
FIGNL1 WILD-TYPE	16	58	51	64	52

'FIGNL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.01

Table S6071. Gene #618: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FIGNL1 MUTATED	0	6	1	1
FIGNL1 WILD-TYPE	98	38	49	56

Figure S2050. Get High-res Image Gene #618: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.15

Table S6072. Gene #618: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FIGNL1 MUTATED	5	1	0	2	0
FIGNL1 WILD-TYPE	57	58	40	35	59

Figure S2051. Get High-res Image Gene #618: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0893 (Fisher's exact test), Q value = 0.22

Table S6073. Gene #618: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FIGNL1 MUTATED	1	1	6
FIGNL1 WILD-TYPE	105	53	91

'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S6074. Gene #618: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FIGNL1 MUTATED	7	1	1
FIGNL1 WILD-TYPE	116	94	70

'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S6075. Gene #618: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FIGNL1 MUTATED	8	1	0
FIGNL1 WILD-TYPE	149	62	69

'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.67

Table S6076. Gene #618: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FIGNL1 MUTATED	0	1	2	3	0	1
FIGNL1 WILD-TYPE	33	18	57	36	16	44

'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.37

Table S6077. Gene #618: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FIGNL1 MUTATED	4	1	2	0	0	0
FIGNL1 WILD-TYPE	43	38	33	32	23	35

'LINGO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 0.92

Table S6078. Gene #619: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LINGO4 MUTATED	2	5	0	2	0
LINGO4 WILD-TYPE	77	121	27	41	12

'LINGO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 0.19

Table S6079. Gene #619: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LINGO4 MUTATED	0	6	1	2
LINGO4 WILD-TYPE	71	70	33	61

'LINGO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 0.98

Table S6080. Gene #619: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LINGO4 MUTATED	0	2	2	3	1
LINGO4 WILD-TYPE	16	60	49	62	54

'LINGO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.49

Table S6081. Gene #619: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LINGO4 MUTATED	1	2	2	3
LINGO4 WILD-TYPE	97	42	48	54

'LINGO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.67

Table S6082. Gene #619: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LINGO4 MUTATED	4	3	0	1	2
LINGO4 WILD-TYPE	58	56	40	36	57

'LINGO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.79

Table S6083. Gene #619: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LINGO4 MUTATED	3	2	5
LINGO4 WILD-TYPE	103	52	92

'LINGO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 0.21

Table S6084. Gene #619: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LINGO4 MUTATED	8	1	1
LINGO4 WILD-TYPE	115	94	70

'LINGO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.49

Table S6085. Gene #619: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LINGO4 MUTATED	8	1	1
LINGO4 WILD-TYPE	149	62	68

'LINGO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 0.93

Table S6086. Gene #619: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LINGO4 MUTATED	2	1	3	1	0	1
LINGO4 WILD-TYPE	31	18	56	38	16	44

'LINGO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.69

Table S6087. Gene #619: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LINGO4 MUTATED	3	1	2	2	0	0
LINGO4 WILD-TYPE	44	38	33	30	23	35

'PARP15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.6

Table S6088. Gene #620: 'PARP15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PARP15 MUTATED	0	4	0	0	0
PARP15 WILD-TYPE	79	122	27	43	12

'PARP15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.65

Table S6089. Gene #620: 'PARP15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PARP15 MUTATED	0	2	1	1
PARP15 WILD-TYPE	71	74	33	62

'PARP15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.31

Table S6090. Gene #620: 'PARP15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PARP15 MUTATED	1	2	0	0	1
PARP15 WILD-TYPE	15	60	51	65	54

'PARP15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.43

Table S6091. Gene #620: 'PARP15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PARP15 MUTATED	1	1	2	0
PARP15 WILD-TYPE	97	43	48	57

'PARP15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.18

Table S6092. Gene #620: 'PARP15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PARP15 MUTATED	3	0	0	0	0
PARP15 WILD-TYPE	59	59	40	37	59

'PARP15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.71

Table S6093. Gene #620: 'PARP15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PARP15 MUTATED	1	0	2
PARP15 WILD-TYPE	105	54	95

'PARP15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.59

Table S6094. Gene #620: 'PARP15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PARP15 MUTATED	3	1	0
PARP15 WILD-TYPE	120	94	71

'PARP15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 0.75

Table S6095. Gene #620: 'PARP15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PARP15 MUTATED	3	1	0
PARP15 WILD-TYPE	154	62	69

'PARP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.57

Table S6096. Gene #620: 'PARP15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PARP15 MUTATED	1	0	3	0	0	0
PARP15 WILD-TYPE	32	19	56	39	16	45

'PARP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.034 (Fisher's exact test), Q value = 0.13

Table S6097. Gene #620: 'PARP15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PARP15 MUTATED	0	0	3	1	0	0
PARP15 WILD-TYPE	47	39	32	31	23	35

Figure S2052. Get High-res Image Gene #620: 'PARP15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GIMAP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.48

Table S6098. Gene #621: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GIMAP7 MUTATED	0	4	1	0	0
GIMAP7 WILD-TYPE	79	122	26	43	12

'GIMAP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.076

Table S6099. Gene #621: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GIMAP7 MUTATED	0	5	0	0
GIMAP7 WILD-TYPE	71	71	34	63

Figure S2053. Get High-res Image Gene #621: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GIMAP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0815 (Fisher's exact test), Q value = 0.21

Table S6100. Gene #621: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GIMAP7 MUTATED	1	0	2	0	2
GIMAP7 WILD-TYPE	15	62	49	65	53

'GIMAP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0075 (Fisher's exact test), Q value = 0.056

Table S6101. Gene #621: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GIMAP7 MUTATED	1	4	0	0
GIMAP7 WILD-TYPE	97	40	50	57

Figure S2054. Get High-res Image Gene #621: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GIMAP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.29

Table S6102. Gene #621: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GIMAP7 MUTATED	2	0	1	2	0
GIMAP7 WILD-TYPE	60	59	39	35	59

'GIMAP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.081

Table S6103. Gene #621: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GIMAP7 MUTATED	0	0	5
GIMAP7 WILD-TYPE	106	54	92

Figure S2055. Get High-res Image Gene #621: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GIMAP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.32

Table S6104. Gene #621: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GIMAP7 MUTATED	4	0	1
GIMAP7 WILD-TYPE	119	95	70

'GIMAP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.4

Table S6105. Gene #621: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GIMAP7 MUTATED	5	0	0
GIMAP7 WILD-TYPE	152	63	69

'GIMAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.59

Table S6106. Gene #621: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GIMAP7 MUTATED	0	1	3	1	0	0
GIMAP7 WILD-TYPE	33	18	56	38	16	45

'GIMAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.32

Table S6107. Gene #621: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GIMAP7 MUTATED	1	0	3	1	0	0
GIMAP7 WILD-TYPE	46	39	32	31	23	35

'KIRREL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S6108. Gene #622: 'KIRREL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIRREL MUTATED	3	6	0	5	0
KIRREL WILD-TYPE	76	120	27	38	12

'KIRREL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0824 (Fisher's exact test), Q value = 0.21

Table S6109. Gene #622: 'KIRREL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIRREL MUTATED	2	8	0	2
KIRREL WILD-TYPE	69	68	34	61

'KIRREL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.87

Table S6110. Gene #622: 'KIRREL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIRREL MUTATED	0	4	1	3	2
KIRREL WILD-TYPE	16	58	50	62	53

'KIRREL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 0.66

Table S6111. Gene #622: 'KIRREL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIRREL MUTATED	2	2	3	3
KIRREL WILD-TYPE	96	42	47	54

'KIRREL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.4

Table S6112. Gene #622: 'KIRREL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIRREL MUTATED	6	2	1	0	2
KIRREL WILD-TYPE	56	57	39	37	57

'KIRREL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.61

Table S6113. Gene #622: 'KIRREL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIRREL MUTATED	4	1	6
KIRREL WILD-TYPE	102	53	91

'KIRREL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.68

Table S6114. Gene #622: 'KIRREL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIRREL MUTATED	8	3	3
KIRREL WILD-TYPE	115	92	68

'KIRREL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 0.92

Table S6115. Gene #622: 'KIRREL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIRREL MUTATED	9	2	3
KIRREL WILD-TYPE	148	61	66

'KIRREL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.33

Table S6116. Gene #622: 'KIRREL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIRREL MUTATED	3	2	2	3	1	0
KIRREL WILD-TYPE	30	17	57	36	15	45

'KIRREL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0615 (Fisher's exact test), Q value = 0.18

Table S6117. Gene #622: 'KIRREL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIRREL MUTATED	6	0	1	3	0	1
KIRREL WILD-TYPE	41	39	34	29	23	34

'PRKAR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.44

Table S6118. Gene #623: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRKAR1B MUTATED	0	5	0	0	0
PRKAR1B WILD-TYPE	79	121	27	43	12

'PRKAR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 0.19

Table S6119. Gene #623: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRKAR1B MUTATED	0	2	2	0
PRKAR1B WILD-TYPE	71	74	32	63

'PRKAR1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.53

Table S6120. Gene #623: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PRKAR1B MUTATED	0	2	0	0	2
PRKAR1B WILD-TYPE	16	60	51	65	53

'PRKAR1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.4

Table S6121. Gene #623: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PRKAR1B MUTATED	1	2	1	0
PRKAR1B WILD-TYPE	97	42	49	57

'PRKAR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 0.15

Table S6122. Gene #623: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PRKAR1B MUTATED	4	0	1	0	0
PRKAR1B WILD-TYPE	58	59	39	37	59

Figure S2056. Get High-res Image Gene #623: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PRKAR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S6123. Gene #623: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PRKAR1B MUTATED	1	0	4
PRKAR1B WILD-TYPE	105	54	93

'PRKAR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S6124. Gene #623: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PRKAR1B MUTATED	4	0	1
PRKAR1B WILD-TYPE	119	95	70

'PRKAR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 0.79

Table S6125. Gene #623: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PRKAR1B MUTATED	4	0	1
PRKAR1B WILD-TYPE	153	63	68

'PRKAR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 0.15

Table S6126. Gene #623: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PRKAR1B MUTATED	0	0	0	3	0	0
PRKAR1B WILD-TYPE	33	19	59	36	16	45

Figure S2057. Get High-res Image Gene #623: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PRKAR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.61

Table S6127. Gene #623: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PRKAR1B MUTATED	1	0	0	1	1	0
PRKAR1B WILD-TYPE	46	39	35	31	22	35

'CLCNKB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.4

Table S6128. Gene #624: 'CLCNKB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CLCNKB MUTATED	1	9	0	2	0
CLCNKB WILD-TYPE	78	117	27	41	12

'CLCNKB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.005 (Fisher's exact test), Q value = 0.045

Table S6129. Gene #624: 'CLCNKB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CLCNKB MUTATED	0	9	1	2
CLCNKB WILD-TYPE	71	67	33	61

Figure S2058. Get High-res Image Gene #624: 'CLCNKB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CLCNKB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0835 (Fisher's exact test), Q value = 0.21

Table S6130. Gene #624: 'CLCNKB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CLCNKB MUTATED	2	4	2	0	2
CLCNKB WILD-TYPE	14	58	49	65	53

'CLCNKB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0616 (Fisher's exact test), Q value = 0.18

Table S6131. Gene #624: 'CLCNKB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CLCNKB MUTATED	2	5	2	1
CLCNKB WILD-TYPE	96	39	48	56

'CLCNKB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00202 (Fisher's exact test), Q value = 0.028

Table S6132. Gene #624: 'CLCNKB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CLCNKB MUTATED	9	1	1	1	0
CLCNKB WILD-TYPE	53	58	39	36	59

Figure S2059. Get High-res Image Gene #624: 'CLCNKB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CLCNKB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.082

Table S6133. Gene #624: 'CLCNKB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CLCNKB MUTATED	1	2	9
CLCNKB WILD-TYPE	105	52	88

Figure S2060. Get High-res Image Gene #624: 'CLCNKB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CLCNKB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S6134. Gene #624: 'CLCNKB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CLCNKB MUTATED	8	1	4
CLCNKB WILD-TYPE	115	94	67

'CLCNKB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S6135. Gene #624: 'CLCNKB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CLCNKB MUTATED	10	2	1
CLCNKB WILD-TYPE	147	61	68

'CLCNKB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.19

Table S6136. Gene #624: 'CLCNKB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CLCNKB MUTATED	1	3	3	4	0	0
CLCNKB WILD-TYPE	32	16	56	35	16	45

'CLCNKB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.6

Table S6137. Gene #624: 'CLCNKB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CLCNKB MUTATED	4	1	3	2	1	0
CLCNKB WILD-TYPE	43	38	32	30	22	35

'LSS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.17

Table S6138. Gene #625: 'LSS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LSS MUTATED	0	7	2	0	0
LSS WILD-TYPE	79	119	25	43	12

'LSS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00587 (Fisher's exact test), Q value = 0.049

Table S6139. Gene #625: 'LSS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LSS MUTATED	0	6	2	0
LSS WILD-TYPE	71	70	32	63

Figure S2061. Get High-res Image Gene #625: 'LSS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LSS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.37

Table S6140. Gene #625: 'LSS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LSS MUTATED	0	2	2	0	4
LSS WILD-TYPE	16	60	49	65	51

'LSS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00119 (Fisher's exact test), Q value = 0.02

Table S6141. Gene #625: 'LSS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LSS MUTATED	1	6	1	0
LSS WILD-TYPE	97	38	49	57

Figure S2062. Get High-res Image Gene #625: 'LSS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LSS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.1

Table S6142. Gene #625: 'LSS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LSS MUTATED	5	0	1	2	0
LSS WILD-TYPE	57	59	39	35	59

Figure S2063. Get High-res Image Gene #625: 'LSS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LSS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.082

Table S6143. Gene #625: 'LSS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LSS MUTATED	1	0	7
LSS WILD-TYPE	105	54	90

Figure S2064. Get High-res Image Gene #625: 'LSS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LSS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0775 (Fisher's exact test), Q value = 0.2

Table S6144. Gene #625: 'LSS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LSS MUTATED	7	2	0
LSS WILD-TYPE	116	93	71

'LSS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S6145. Gene #625: 'LSS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LSS MUTATED	8	1	0
LSS WILD-TYPE	149	62	69

'LSS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.57

Table S6146. Gene #625: 'LSS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LSS MUTATED	0	2	3	2	0	1
LSS WILD-TYPE	33	17	56	37	16	44

'LSS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.72

Table S6147. Gene #625: 'LSS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LSS MUTATED	2	1	3	1	1	0
LSS WILD-TYPE	45	38	32	31	22	35

'KIF2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S6148. Gene #626: 'KIF2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIF2B MUTATED	7	12	2	5	1
KIF2B WILD-TYPE	72	114	25	38	11

'KIF2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.74

Table S6149. Gene #626: 'KIF2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIF2B MUTATED	8	10	2	5
KIF2B WILD-TYPE	63	66	32	58

'KIF2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.61

Table S6150. Gene #626: 'KIF2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIF2B MUTATED	2	7	6	3	4
KIF2B WILD-TYPE	14	55	45	62	51

'KIF2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.49

Table S6151. Gene #626: 'KIF2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIF2B MUTATED	9	5	6	2
KIF2B WILD-TYPE	89	39	44	55

'KIF2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.4

Table S6152. Gene #626: 'KIF2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIF2B MUTATED	6	2	4	6	7
KIF2B WILD-TYPE	56	57	36	31	52

'KIF2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.62

Table S6153. Gene #626: 'KIF2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIF2B MUTATED	8	5	12
KIF2B WILD-TYPE	98	49	85

'KIF2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.59

Table S6154. Gene #626: 'KIF2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIF2B MUTATED	14	6	7
KIF2B WILD-TYPE	109	89	64

'KIF2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.24

Table S6155. Gene #626: 'KIF2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIF2B MUTATED	19	2	6
KIF2B WILD-TYPE	138	61	63

'KIF2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.48

Table S6156. Gene #626: 'KIF2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIF2B MUTATED	3	3	5	7	0	3
KIF2B WILD-TYPE	30	16	54	32	16	42

'KIF2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S6157. Gene #626: 'KIF2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIF2B MUTATED	6	3	3	4	2	3
KIF2B WILD-TYPE	41	36	32	28	21	32

'LCE1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.26

Table S6158. Gene #627: 'LCE1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LCE1A MUTATED	1	0	0	2	0
LCE1A WILD-TYPE	78	126	27	41	12

'LCE1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 0.84

Table S6159. Gene #627: 'LCE1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LCE1A MUTATED	2	1	0	0
LCE1A WILD-TYPE	69	75	34	63

'LCE1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.7

Table S6160. Gene #627: 'LCE1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LCE1A MUTATED	0	0	0	2	1
LCE1A WILD-TYPE	16	62	51	63	54

'LCE1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.4

Table S6161. Gene #627: 'LCE1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LCE1A MUTATED	1	0	2	0
LCE1A WILD-TYPE	97	44	48	57

'LCE1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 0.87

Table S6162. Gene #627: 'LCE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LCE1A MUTATED	0	1	1	0	1
LCE1A WILD-TYPE	62	58	39	37	58

'LCE1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6163. Gene #627: 'LCE1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LCE1A MUTATED	1	1	1
LCE1A WILD-TYPE	105	53	96

'LCE1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S6164. Gene #627: 'LCE1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LCE1A MUTATED	0	1	2
LCE1A WILD-TYPE	123	94	69

'LCE1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.1

Table S6165. Gene #627: 'LCE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LCE1A MUTATED	0	0	3
LCE1A WILD-TYPE	157	63	66

Figure S2065. Get High-res Image Gene #627: 'LCE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LCE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.35

Table S6166. Gene #627: 'LCE1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LCE1A MUTATED	2	0	0	0	0	1
LCE1A WILD-TYPE	31	19	59	39	16	44

'LCE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6167. Gene #627: 'LCE1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LCE1A MUTATED	1	1	0	0	0	1
LCE1A WILD-TYPE	46	38	35	32	23	34

'PRSS48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.093

Table S6168. Gene #628: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRSS48 MUTATED	0	3	1	0	2
PRSS48 WILD-TYPE	79	123	26	43	10

Figure S2066. Get High-res Image Gene #628: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRSS48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.25

Table S6169. Gene #628: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRSS48 MUTATED	0	4	0	1
PRSS48 WILD-TYPE	71	72	34	62

'PRSS48 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0975 (Fisher's exact test), Q value = 0.23

Table S6170. Gene #628: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PRSS48 MUTATED	1	3	0	0	1
PRSS48 WILD-TYPE	15	59	51	65	54

'PRSS48 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.61

Table S6171. Gene #628: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PRSS48 MUTATED	2	1	2	0
PRSS48 WILD-TYPE	96	43	48	57

'PRSS48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S6172. Gene #628: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PRSS48 MUTATED	3	0	1	1	0
PRSS48 WILD-TYPE	59	59	39	36	59

'PRSS48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S6173. Gene #628: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PRSS48 MUTATED	1	0	4
PRSS48 WILD-TYPE	105	54	93

'PRSS48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.69

Table S6174. Gene #628: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PRSS48 MUTATED	4	1	1
PRSS48 WILD-TYPE	119	94	70

'PRSS48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S6175. Gene #628: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PRSS48 MUTATED	6	0	0
PRSS48 WILD-TYPE	151	63	69

'PRSS48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.68

Table S6176. Gene #628: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PRSS48 MUTATED	0	1	2	1	0	0
PRSS48 WILD-TYPE	33	18	57	38	16	45

'PRSS48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.46

Table S6177. Gene #628: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PRSS48 MUTATED	1	0	2	0	1	0
PRSS48 WILD-TYPE	46	39	33	32	22	35

'FGF13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.094

Table S6178. Gene #629: 'FGF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FGF13 MUTATED	0	9	0	0	1
FGF13 WILD-TYPE	79	117	27	43	11

Figure S2067. Get High-res Image Gene #629: 'FGF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FGF13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.074

Table S6179. Gene #629: 'FGF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FGF13 MUTATED	0	3	4	1
FGF13 WILD-TYPE	71	73	30	62

Figure S2068. Get High-res Image Gene #629: 'FGF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FGF13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.75

Table S6180. Gene #629: 'FGF13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FGF13 MUTATED	0	4	1	2	1
FGF13 WILD-TYPE	16	58	50	63	54

'FGF13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.63

Table S6181. Gene #629: 'FGF13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FGF13 MUTATED	2	2	3	1
FGF13 WILD-TYPE	96	42	47	56

'FGF13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00599 (Fisher's exact test), Q value = 0.05

Table S6182. Gene #629: 'FGF13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FGF13 MUTATED	6	0	1	3	0
FGF13 WILD-TYPE	56	59	39	34	59

Figure S2069. Get High-res Image Gene #629: 'FGF13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FGF13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6183. Gene #629: 'FGF13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FGF13 MUTATED	4	2	4
FGF13 WILD-TYPE	102	52	93

'FGF13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0829 (Fisher's exact test), Q value = 0.21

Table S6184. Gene #629: 'FGF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FGF13 MUTATED	8	1	1
FGF13 WILD-TYPE	115	94	70

'FGF13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0579 (Fisher's exact test), Q value = 0.17

Table S6185. Gene #629: 'FGF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FGF13 MUTATED	9	1	0
FGF13 WILD-TYPE	148	62	69

'FGF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S6186. Gene #629: 'FGF13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FGF13 MUTATED	0	2	3	2	1	0
FGF13 WILD-TYPE	33	17	56	37	15	45

'FGF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0385 (Fisher's exact test), Q value = 0.14

Table S6187. Gene #629: 'FGF13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FGF13 MUTATED	1	0	3	1	3	0
FGF13 WILD-TYPE	46	39	32	31	20	35

Figure S2070. Get High-res Image Gene #629: 'FGF13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPRASP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 0.15

Table S6188. Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPRASP1 MUTATED	0	10	1	3	1
GPRASP1 WILD-TYPE	79	116	26	40	11

Figure S2071. Get High-res Image Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPRASP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00188 (Fisher's exact test), Q value = 0.027

Table S6189. Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPRASP1 MUTATED	0	9	1	1
GPRASP1 WILD-TYPE	71	67	33	62

Figure S2072. Get High-res Image Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPRASP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.11

Table S6190. Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GPRASP1 MUTATED	1	7	0	1	4
GPRASP1 WILD-TYPE	15	55	51	64	51

Figure S2073. Get High-res Image Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GPRASP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S6191. Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GPRASP1 MUTATED	3	4	5	1
GPRASP1 WILD-TYPE	95	40	45	56

'GPRASP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.14

Table S6192. Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GPRASP1 MUTATED	7	2	3	1	0
GPRASP1 WILD-TYPE	55	57	37	36	59

Figure S2074. Get High-res Image Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPRASP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.36

Table S6193. Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GPRASP1 MUTATED	4	1	8
GPRASP1 WILD-TYPE	102	53	89

'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.066

Table S6194. Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GPRASP1 MUTATED	12	1	2
GPRASP1 WILD-TYPE	111	94	69

Figure S2075. Get High-res Image Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.083

Table S6195. Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GPRASP1 MUTATED	13	2	0
GPRASP1 WILD-TYPE	144	61	69

Figure S2076. Get High-res Image Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.54

Table S6196. Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GPRASP1 MUTATED	2	1	4	3	0	0
GPRASP1 WILD-TYPE	31	18	55	36	16	45

'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.1

Table S6197. Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GPRASP1 MUTATED	6	0	3	1	0	0
GPRASP1 WILD-TYPE	41	39	32	31	23	35

Figure S2077. Get High-res Image Gene #630: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RERE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0015 (Fisher's exact test), Q value = 0.023

Table S6198. Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RERE MUTATED	0	15	2	1	2
RERE WILD-TYPE	79	111	25	42	10

Figure S2078. Get High-res Image Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RERE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.0086

Table S6199. Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RERE MUTATED	0	11	1	1
RERE WILD-TYPE	71	65	33	62

Figure S2079. Get High-res Image Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RERE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.13

Table S6200. Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RERE MUTATED	1	7	5	0	5
RERE WILD-TYPE	15	55	46	65	50

Figure S2080. Get High-res Image Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RERE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00068 (Fisher's exact test), Q value = 0.014

Table S6201. Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RERE MUTATED	5	9	4	0
RERE WILD-TYPE	93	35	46	57

Figure S2081. Get High-res Image Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RERE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S6202. Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RERE MUTATED	13	0	4	3	0
RERE WILD-TYPE	49	59	36	34	59

Figure S2082. Get High-res Image Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RERE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S6203. Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RERE MUTATED	3	0	17
RERE WILD-TYPE	103	54	80

Figure S2083. Get High-res Image Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RERE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.0083

Table S6204. Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RERE MUTATED	17	1	2
RERE WILD-TYPE	106	94	69

Figure S2084. Get High-res Image Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RERE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00353 (Fisher's exact test), Q value = 0.037

Table S6205. Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RERE MUTATED	18	1	1
RERE WILD-TYPE	139	62	68

Figure S2085. Get High-res Image Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RERE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.29

Table S6206. Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RERE MUTATED	1	2	5	4	0	0
RERE WILD-TYPE	32	17	54	35	16	45

'RERE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 0.11

Table S6207. Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RERE MUTATED	6	0	4	1	1	0
RERE WILD-TYPE	41	39	31	31	22	35

Figure S2086. Get High-res Image Gene #631: 'RERE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PPP1R13B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.35

Table S6208. Gene #632: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PPP1R13B MUTATED	1	7	2	0	0
PPP1R13B WILD-TYPE	78	119	25	43	12

'PPP1R13B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.45

Table S6209. Gene #632: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PPP1R13B MUTATED	0	2	1	3
PPP1R13B WILD-TYPE	71	74	33	60

'PPP1R13B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.14

Table S6210. Gene #632: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PPP1R13B MUTATED	3	3	1	1	1
PPP1R13B WILD-TYPE	13	59	50	64	54

Figure S2087. Get High-res Image Gene #632: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PPP1R13B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.49

Table S6211. Gene #632: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PPP1R13B MUTATED	5	0	3	1
PPP1R13B WILD-TYPE	93	44	47	56

'PPP1R13B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.77

Table S6212. Gene #632: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PPP1R13B MUTATED	3	2	3	1	1
PPP1R13B WILD-TYPE	59	57	37	36	58

'PPP1R13B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 0.89

Table S6213. Gene #632: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PPP1R13B MUTATED	5	1	4
PPP1R13B WILD-TYPE	101	53	93

'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.21

Table S6214. Gene #632: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PPP1R13B MUTATED	8	1	1
PPP1R13B WILD-TYPE	115	94	70

'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.77

Table S6215. Gene #632: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PPP1R13B MUTATED	7	1	2
PPP1R13B WILD-TYPE	150	62	67

'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.49

Table S6216. Gene #632: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PPP1R13B MUTATED	0	0	3	1	1	0
PPP1R13B WILD-TYPE	33	19	56	38	15	45

'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.25

Table S6217. Gene #632: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PPP1R13B MUTATED	0	0	3	1	0	1
PPP1R13B WILD-TYPE	47	39	32	31	23	34

'LRP12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0564 (Fisher's exact test), Q value = 0.17

Table S6218. Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LRP12 MUTATED	3	17	2	1	0
LRP12 WILD-TYPE	76	109	25	42	12

'LRP12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S6219. Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LRP12 MUTATED	4	10	3	2
LRP12 WILD-TYPE	67	66	31	61

'LRP12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0829 (Fisher's exact test), Q value = 0.21

Table S6220. Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LRP12 MUTATED	3	6	5	1	5
LRP12 WILD-TYPE	13	56	46	64	50

'LRP12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.099

Table S6221. Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LRP12 MUTATED	6	9	3	2
LRP12 WILD-TYPE	92	35	47	55

Figure S2088. Get High-res Image Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LRP12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.13

Table S6222. Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LRP12 MUTATED	7	2	2	6	1
LRP12 WILD-TYPE	55	57	38	31	58

Figure S2089. Get High-res Image Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LRP12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0482 (Fisher's exact test), Q value = 0.15

Table S6223. Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LRP12 MUTATED	4	2	12
LRP12 WILD-TYPE	102	52	85

Figure S2090. Get High-res Image Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0033

Table S6224. Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LRP12 MUTATED	19	0	4
LRP12 WILD-TYPE	104	95	67

Figure S2091. Get High-res Image Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00642 (Fisher's exact test), Q value = 0.052

Table S6225. Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LRP12 MUTATED	18	0	5
LRP12 WILD-TYPE	139	63	64

Figure S2092. Get High-res Image Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.12

Table S6226. Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LRP12 MUTATED	4	4	6	3	0	0
LRP12 WILD-TYPE	29	15	53	36	16	45

Figure S2093. Get High-res Image Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00745 (Fisher's exact test), Q value = 0.056

Table S6227. Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LRP12 MUTATED	10	1	2	3	1	0
LRP12 WILD-TYPE	37	38	33	29	22	35

Figure S2094. Get High-res Image Gene #633: 'LRP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ATP8B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.12

Table S6228. Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ATP8B1 MUTATED	1	10	3	0	1
ATP8B1 WILD-TYPE	78	116	24	43	11

Figure S2095. Get High-res Image Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP8B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00649 (Fisher's exact test), Q value = 0.052

Table S6229. Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ATP8B1 MUTATED	1	8	1	0
ATP8B1 WILD-TYPE	70	68	33	63

Figure S2096. Get High-res Image Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP8B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.17

Table S6230. Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ATP8B1 MUTATED	1	6	5	0	3
ATP8B1 WILD-TYPE	15	56	46	65	52

'ATP8B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00062 (Fisher's exact test), Q value = 0.013

Table S6231. Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ATP8B1 MUTATED	3	8	4	0
ATP8B1 WILD-TYPE	95	36	46	57

Figure S2097. Get High-res Image Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATP8B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0768 (Fisher's exact test), Q value = 0.2

Table S6232. Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ATP8B1 MUTATED	4	1	3	5	1
ATP8B1 WILD-TYPE	58	58	37	32	58

'ATP8B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00422 (Fisher's exact test), Q value = 0.041

Table S6233. Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ATP8B1 MUTATED	3	0	11
ATP8B1 WILD-TYPE	103	54	86

Figure S2098. Get High-res Image Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00245 (Fisher's exact test), Q value = 0.031

Table S6234. Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ATP8B1 MUTATED	13	1	1
ATP8B1 WILD-TYPE	110	94	70

Figure S2099. Get High-res Image Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0432 (Fisher's exact test), Q value = 0.15

Table S6235. Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ATP8B1 MUTATED	13	1	1
ATP8B1 WILD-TYPE	144	62	68

Figure S2100. Get High-res Image Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0218 (Fisher's exact test), Q value = 0.1

Table S6236. Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ATP8B1 MUTATED	2	2	7	0	0	0
ATP8B1 WILD-TYPE	31	17	52	39	16	45

Figure S2101. Get High-res Image Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ATP8B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0869 (Fisher's exact test), Q value = 0.21

Table S6237. Gene #634: 'ATP8B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ATP8B1 MUTATED	5	0	4	1	0	1
ATP8B1 WILD-TYPE	42	39	31	31	23	34

'NAA35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.7

Table S6238. Gene #635: 'NAA35 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NAA35 MUTATED	0	3	0	1	0
NAA35 WILD-TYPE	79	123	27	42	12

'NAA35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.3

Table S6239. Gene #635: 'NAA35 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NAA35 MUTATED	0	3	0	0
NAA35 WILD-TYPE	71	73	34	63

'NAA35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.77

Table S6240. Gene #635: 'NAA35 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NAA35 MUTATED	0	2	1	0	1
NAA35 WILD-TYPE	16	60	50	65	54

'NAA35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00918 (Fisher's exact test), Q value = 0.063

Table S6241. Gene #635: 'NAA35 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NAA35 MUTATED	0	3	1	0
NAA35 WILD-TYPE	98	41	49	57

Figure S2102. Get High-res Image Gene #635: 'NAA35 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NAA35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.26

Table S6242. Gene #635: 'NAA35 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NAA35 MUTATED	3	0	1	0	0
NAA35 WILD-TYPE	59	59	39	37	59

'NAA35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.57

Table S6243. Gene #635: 'NAA35 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NAA35 MUTATED	1	0	3
NAA35 WILD-TYPE	105	54	94

'NAA35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.6

Table S6244. Gene #635: 'NAA35 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NAA35 MUTATED	3	1	0
NAA35 WILD-TYPE	120	94	71

'NAA35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.56

Table S6245. Gene #635: 'NAA35 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NAA35 MUTATED	4	0	0
NAA35 WILD-TYPE	153	63	69

'NAA35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.7

Table S6246. Gene #635: 'NAA35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NAA35 MUTATED	0	0	1	2	0	0
NAA35 WILD-TYPE	33	19	58	37	16	45

'NAA35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.71

Table S6247. Gene #635: 'NAA35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NAA35 MUTATED	1	0	1	0	1	0
NAA35 WILD-TYPE	46	39	34	32	22	35

'WWC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.58

Table S6248. Gene #636: 'WWC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WWC1 MUTATED	2	10	1	1	0
WWC1 WILD-TYPE	77	116	26	42	12

'WWC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.39

Table S6249. Gene #636: 'WWC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WWC1 MUTATED	2	5	3	1
WWC1 WILD-TYPE	69	71	31	62

'WWC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.71

Table S6250. Gene #636: 'WWC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WWC1 MUTATED	1	2	4	2	4
WWC1 WILD-TYPE	15	60	47	63	51

'WWC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.5

Table S6251. Gene #636: 'WWC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WWC1 MUTATED	4	4	1	4
WWC1 WILD-TYPE	94	40	49	53

'WWC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S6252. Gene #636: 'WWC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WWC1 MUTATED	6	4	0	1	2
WWC1 WILD-TYPE	56	55	40	36	57

'WWC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 0.87

Table S6253. Gene #636: 'WWC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WWC1 MUTATED	5	2	6
WWC1 WILD-TYPE	101	52	91

'WWC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.68

Table S6254. Gene #636: 'WWC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WWC1 MUTATED	8	3	3
WWC1 WILD-TYPE	115	92	68

'WWC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.65

Table S6255. Gene #636: 'WWC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WWC1 MUTATED	10	2	2
WWC1 WILD-TYPE	147	61	67

'WWC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.37

Table S6256. Gene #636: 'WWC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WWC1 MUTATED	1	1	6	2	0	0
WWC1 WILD-TYPE	32	18	53	37	16	45

'WWC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.27

Table S6257. Gene #636: 'WWC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WWC1 MUTATED	3	0	4	2	1	0
WWC1 WILD-TYPE	44	39	31	30	22	35

'DNAH7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 0.88

Table S6258. Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DNAH7 MUTATED	9	22	4	6	1
DNAH7 WILD-TYPE	70	104	23	37	11

'DNAH7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.4

Table S6259. Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DNAH7 MUTATED	9	16	4	6
DNAH7 WILD-TYPE	62	60	30	57

'DNAH7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.52

Table S6260. Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DNAH7 MUTATED	5	10	7	7	9
DNAH7 WILD-TYPE	11	52	44	58	46

'DNAH7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.29

Table S6261. Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DNAH7 MUTATED	16	11	6	5
DNAH7 WILD-TYPE	82	33	44	52

'DNAH7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.14

Table S6262. Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DNAH7 MUTATED	16	4	4	7	7
DNAH7 WILD-TYPE	46	55	36	30	52

Figure S2103. Get High-res Image Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DNAH7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00843 (Fisher's exact test), Q value = 0.061

Table S6263. Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DNAH7 MUTATED	11	4	23
DNAH7 WILD-TYPE	95	50	74

Figure S2104. Get High-res Image Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DNAH7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0061

Table S6264. Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DNAH7 MUTATED	29	4	9
DNAH7 WILD-TYPE	94	91	62

Figure S2105. Get High-res Image Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DNAH7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00502 (Fisher's exact test), Q value = 0.045

Table S6265. Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DNAH7 MUTATED	32	3	7
DNAH7 WILD-TYPE	125	60	62

Figure S2106. Get High-res Image Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DNAH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.38

Table S6266. Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DNAH7 MUTATED	5	4	9	8	3	2
DNAH7 WILD-TYPE	28	15	50	31	13	43

'DNAH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00154 (Fisher's exact test), Q value = 0.023

Table S6267. Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DNAH7 MUTATED	11	1	6	10	1	2
DNAH7 WILD-TYPE	36	38	29	22	22	33

Figure S2107. Get High-res Image Gene #637: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ELK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.59

Table S6268. Gene #638: 'ELK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ELK3 MUTATED	0	3	1	1	0
ELK3 WILD-TYPE	79	123	26	42	12

'ELK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S6269. Gene #638: 'ELK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ELK3 MUTATED	0	4	1	1
ELK3 WILD-TYPE	71	72	33	62

'ELK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.57

Table S6270. Gene #638: 'ELK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ELK3 MUTATED	0	3	1	0	1
ELK3 WILD-TYPE	16	59	50	65	54

'ELK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00943 (Fisher's exact test), Q value = 0.064

Table S6271. Gene #638: 'ELK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ELK3 MUTATED	0	3	2	0
ELK3 WILD-TYPE	98	41	48	57

Figure S2108. Get High-res Image Gene #638: 'ELK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ELK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00985 (Fisher's exact test), Q value = 0.066

Table S6272. Gene #638: 'ELK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ELK3 MUTATED	5	0	0	1	0
ELK3 WILD-TYPE	57	59	40	36	59

Figure S2109. Get High-res Image Gene #638: 'ELK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ELK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00458 (Fisher's exact test), Q value = 0.043

Table S6273. Gene #638: 'ELK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ELK3 MUTATED	0	0	6
ELK3 WILD-TYPE	106	54	91

Figure S2110. Get High-res Image Gene #638: 'ELK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ELK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.083

Table S6274. Gene #638: 'ELK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ELK3 MUTATED	6	0	0
ELK3 WILD-TYPE	117	95	71

Figure S2111. Get High-res Image Gene #638: 'ELK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ELK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S6275. Gene #638: 'ELK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ELK3 MUTATED	6	0	0
ELK3 WILD-TYPE	151	63	69

'ELK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.72

Table S6276. Gene #638: 'ELK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ELK3 MUTATED	1	1	3	1	0	0
ELK3 WILD-TYPE	32	18	56	38	16	45

'ELK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0752 (Fisher's exact test), Q value = 0.2

Table S6277. Gene #638: 'ELK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ELK3 MUTATED	3	0	3	0	0	0
ELK3 WILD-TYPE	44	39	32	32	23	35

'HIST1H1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.48

Table S6278. Gene #639: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HIST1H1A MUTATED	0	4	1	0	0
HIST1H1A WILD-TYPE	79	122	26	43	12

'HIST1H1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S6279. Gene #639: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HIST1H1A MUTATED	0	2	0	1
HIST1H1A WILD-TYPE	71	74	34	62

'HIST1H1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S6280. Gene #639: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HIST1H1A MUTATED	0	3	0	0	2
HIST1H1A WILD-TYPE	16	59	51	65	53

'HIST1H1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0402 (Fisher's exact test), Q value = 0.14

Table S6281. Gene #639: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HIST1H1A MUTATED	0	3	1	1
HIST1H1A WILD-TYPE	98	41	49	56

Figure S2112. Get High-res Image Gene #639: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HIST1H1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.45

Table S6282. Gene #639: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HIST1H1A MUTATED	2	0	1	0	0
HIST1H1A WILD-TYPE	60	59	39	37	59

'HIST1H1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.25

Table S6283. Gene #639: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HIST1H1A MUTATED	0	0	3
HIST1H1A WILD-TYPE	106	54	94

'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.65

Table S6284. Gene #639: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HIST1H1A MUTATED	3	2	0
HIST1H1A WILD-TYPE	120	93	71

'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.4

Table S6285. Gene #639: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HIST1H1A MUTATED	5	0	0
HIST1H1A WILD-TYPE	152	63	69

'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6286. Gene #639: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HIST1H1A MUTATED	0	0	1	1	0	1
HIST1H1A WILD-TYPE	33	19	58	38	16	44

'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.61

Table S6287. Gene #639: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HIST1H1A MUTATED	1	0	0	1	1	0
HIST1H1A WILD-TYPE	46	39	35	31	22	35

'ACSS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 0.19

Table S6288. Gene #640: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ACSS2 MUTATED	0	8	1	0	0
ACSS2 WILD-TYPE	79	118	26	43	12

'ACSS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.63

Table S6289. Gene #640: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ACSS2 MUTATED	1	4	1	1
ACSS2 WILD-TYPE	70	72	33	62

'ACSS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00324 (Fisher's exact test), Q value = 0.035

Table S6290. Gene #640: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ACSS2 MUTATED	1	2	6	0	0
ACSS2 WILD-TYPE	15	60	45	65	55

Figure S2113. Get High-res Image Gene #640: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ACSS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00156 (Fisher's exact test), Q value = 0.024

Table S6291. Gene #640: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ACSS2 MUTATED	3	6	0	0
ACSS2 WILD-TYPE	95	38	50	57

Figure S2114. Get High-res Image Gene #640: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ACSS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.48

Table S6292. Gene #640: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ACSS2 MUTATED	4	2	1	1	0
ACSS2 WILD-TYPE	58	57	39	36	59

'ACSS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0187 (Fisher's exact test), Q value = 0.092

Table S6293. Gene #640: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ACSS2 MUTATED	0	2	6
ACSS2 WILD-TYPE	106	52	91

Figure S2115. Get High-res Image Gene #640: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ACSS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.72

Table S6294. Gene #640: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ACSS2 MUTATED	5	3	1
ACSS2 WILD-TYPE	118	92	70

'ACSS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.32

Table S6295. Gene #640: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ACSS2 MUTATED	6	3	0
ACSS2 WILD-TYPE	151	60	69

'ACSS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.74

Table S6296. Gene #640: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ACSS2 MUTATED	0	1	1	2	0	2
ACSS2 WILD-TYPE	33	18	58	37	16	43

'ACSS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.75

Table S6297. Gene #640: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ACSS2 MUTATED	2	2	1	0	1	0
ACSS2 WILD-TYPE	45	37	34	32	22	35

'ZBTB40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.57

Table S6298. Gene #641: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZBTB40 MUTATED	1	5	1	2	1
ZBTB40 WILD-TYPE	78	121	26	41	11

'ZBTB40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.092

Table S6299. Gene #641: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZBTB40 MUTATED	1	7	1	0
ZBTB40 WILD-TYPE	70	69	33	63

Figure S2116. Get High-res Image Gene #641: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.6

Table S6300. Gene #641: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZBTB40 MUTATED	0	4	3	1	1
ZBTB40 WILD-TYPE	16	58	48	64	54

'ZBTB40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S6301. Gene #641: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZBTB40 MUTATED	2	2	4	1
ZBTB40 WILD-TYPE	96	42	46	56

'ZBTB40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.51

Table S6302. Gene #641: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZBTB40 MUTATED	3	0	1	2	1
ZBTB40 WILD-TYPE	59	59	39	35	58

'ZBTB40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.27

Table S6303. Gene #641: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZBTB40 MUTATED	2	0	5
ZBTB40 WILD-TYPE	104	54	92

'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S6304. Gene #641: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZBTB40 MUTATED	7	1	2
ZBTB40 WILD-TYPE	116	94	69

'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.49

Table S6305. Gene #641: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZBTB40 MUTATED	8	1	1
ZBTB40 WILD-TYPE	149	62	68

'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 0.87

Table S6306. Gene #641: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZBTB40 MUTATED	2	1	2	1	1	1
ZBTB40 WILD-TYPE	31	18	57	38	15	44

'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.42

Table S6307. Gene #641: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZBTB40 MUTATED	2	0	3	2	1	0
ZBTB40 WILD-TYPE	45	39	32	30	22	35

'OSTALPHA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.66

Table S6308. Gene #642: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OSTALPHA MUTATED	0	3	0	0	0
OSTALPHA WILD-TYPE	79	123	27	43	12

'OSTALPHA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.71

Table S6309. Gene #642: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OSTALPHA MUTATED	0	2	0	1
OSTALPHA WILD-TYPE	71	74	34	62

'OSTALPHA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.63

Table S6310. Gene #642: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OSTALPHA MUTATED	0	2	0	0	1
OSTALPHA WILD-TYPE	16	60	51	65	54

'OSTALPHA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0642 (Fisher's exact test), Q value = 0.18

Table S6311. Gene #642: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OSTALPHA MUTATED	0	1	2	0
OSTALPHA WILD-TYPE	98	43	48	57

'OSTALPHA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.42

Table S6312. Gene #642: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OSTALPHA MUTATED	2	0	0	1	0
OSTALPHA WILD-TYPE	60	59	40	36	59

'OSTALPHA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6313. Gene #642: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OSTALPHA MUTATED	1	1	1
OSTALPHA WILD-TYPE	105	53	96

'OSTALPHA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S6314. Gene #642: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OSTALPHA MUTATED	2	1	0
OSTALPHA WILD-TYPE	121	94	71

'OSTALPHA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 0.85

Table S6315. Gene #642: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OSTALPHA MUTATED	2	1	0
OSTALPHA WILD-TYPE	155	62	69

'OSTALPHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 0.88

Table S6316. Gene #642: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OSTALPHA MUTATED	1	0	1	1	0	0
OSTALPHA WILD-TYPE	32	19	58	38	16	45

'OSTALPHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.43

Table S6317. Gene #642: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OSTALPHA MUTATED	0	0	1	1	1	0
OSTALPHA WILD-TYPE	47	39	34	31	22	35

'PPARG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.35

Table S6318. Gene #643: 'PPARG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PPARG MUTATED	0	3	0	0	1
PPARG WILD-TYPE	79	123	27	43	11

'PPARG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.53

Table S6319. Gene #643: 'PPARG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PPARG MUTATED	0	1	0	0	2
PPARG WILD-TYPE	16	61	51	65	53

'PPARG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 0.7

Table S6320. Gene #643: 'PPARG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PPARG MUTATED	1	1	1	0
PPARG WILD-TYPE	97	43	49	57

'PPARG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.49

Table S6321. Gene #643: 'PPARG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PPARG MUTATED	2	0	1	1	0
PPARG WILD-TYPE	60	59	39	36	59

'PPARG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.57

Table S6322. Gene #643: 'PPARG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PPARG MUTATED	1	0	3
PPARG WILD-TYPE	105	54	94

'PPARG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0909 (Fisher's exact test), Q value = 0.22

Table S6323. Gene #643: 'PPARG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PPARG MUTATED	4	0	0
PPARG WILD-TYPE	119	95	71

'PPARG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.56

Table S6324. Gene #643: 'PPARG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PPARG MUTATED	4	0	0
PPARG WILD-TYPE	153	63	69

'MAPK15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.32

Table S6325. Gene #644: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAPK15 MUTATED	0	5	0	1	1
MAPK15 WILD-TYPE	79	121	27	42	11

'MAPK15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.29

Table S6326. Gene #644: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAPK15 MUTATED	0	3	0	0
MAPK15 WILD-TYPE	71	73	34	63

'MAPK15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.34

Table S6327. Gene #644: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MAPK15 MUTATED	0	1	0	1	4
MAPK15 WILD-TYPE	16	61	51	64	51

'MAPK15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 0.89

Table S6328. Gene #644: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MAPK15 MUTATED	2	2	1	1
MAPK15 WILD-TYPE	96	42	49	56

'MAPK15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.33

Table S6329. Gene #644: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MAPK15 MUTATED	4	1	1	0	0
MAPK15 WILD-TYPE	58	58	39	37	59

'MAPK15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S6330. Gene #644: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MAPK15 MUTATED	1	0	5
MAPK15 WILD-TYPE	105	54	92

'MAPK15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.52

Table S6331. Gene #644: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MAPK15 MUTATED	5	1	1
MAPK15 WILD-TYPE	118	94	70

'MAPK15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 0.84

Table S6332. Gene #644: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MAPK15 MUTATED	5	1	1
MAPK15 WILD-TYPE	152	62	68

'MAPK15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.69

Table S6333. Gene #644: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MAPK15 MUTATED	0	0	1	2	0	0
MAPK15 WILD-TYPE	33	19	58	37	16	45

'MAPK15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 0.89

Table S6334. Gene #644: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MAPK15 MUTATED	1	0	1	1	0	0
MAPK15 WILD-TYPE	46	39	34	31	23	35

'CASKIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.17

Table S6335. Gene #645: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CASKIN2 MUTATED	0	7	1	0	1
CASKIN2 WILD-TYPE	79	119	26	43	11

'CASKIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 0.84

Table S6336. Gene #645: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CASKIN2 MUTATED	2	4	1	1
CASKIN2 WILD-TYPE	69	72	33	62

'CASKIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 0.88

Table S6337. Gene #645: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CASKIN2 MUTATED	0	3	1	1	2
CASKIN2 WILD-TYPE	16	59	50	64	53

'CASKIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.088

Table S6338. Gene #645: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CASKIN2 MUTATED	0	3	3	1
CASKIN2 WILD-TYPE	98	41	47	56

Figure S2117. Get High-res Image Gene #645: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CASKIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.67

Table S6339. Gene #645: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CASKIN2 MUTATED	4	1	1	2	1
CASKIN2 WILD-TYPE	58	58	39	35	58

'CASKIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0433 (Fisher's exact test), Q value = 0.15

Table S6340. Gene #645: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CASKIN2 MUTATED	2	0	7
CASKIN2 WILD-TYPE	104	54	90

Figure S2118. Get High-res Image Gene #645: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CASKIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.6

Table S6341. Gene #645: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CASKIN2 MUTATED	6	2	1
CASKIN2 WILD-TYPE	117	93	70

'CASKIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.4

Table S6342. Gene #645: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CASKIN2 MUTATED	7	0	2
CASKIN2 WILD-TYPE	150	63	67

'CASKIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.4

Table S6343. Gene #645: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CASKIN2 MUTATED	0	1	4	2	1	0
CASKIN2 WILD-TYPE	33	18	55	37	15	45

'CASKIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.43

Table S6344. Gene #645: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CASKIN2 MUTATED	4	0	2	0	1	1
CASKIN2 WILD-TYPE	43	39	33	32	22	34

'TRIM27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.29

Table S6345. Gene #646: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TRIM27 MUTATED	0	4	0	0	1
TRIM27 WILD-TYPE	79	122	27	43	11

'TRIM27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0975 (Fisher's exact test), Q value = 0.23

Table S6346. Gene #646: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TRIM27 MUTATED	0	3	1	0
TRIM27 WILD-TYPE	71	73	33	63

'TRIM27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.77

Table S6347. Gene #646: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TRIM27 MUTATED	0	2	1	0	1
TRIM27 WILD-TYPE	16	60	50	65	54

'TRIM27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.4

Table S6348. Gene #646: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TRIM27 MUTATED	1	2	1	0
TRIM27 WILD-TYPE	97	42	49	57

'TRIM27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0515 (Fisher's exact test), Q value = 0.16

Table S6349. Gene #646: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TRIM27 MUTATED	3	0	0	2	0
TRIM27 WILD-TYPE	59	59	40	35	59

'TRIM27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S6350. Gene #646: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TRIM27 MUTATED	1	0	4
TRIM27 WILD-TYPE	105	54	93

'TRIM27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.12

Table S6351. Gene #646: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TRIM27 MUTATED	5	0	0
TRIM27 WILD-TYPE	118	95	71

Figure S2119. Get High-res Image Gene #646: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TRIM27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.4

Table S6352. Gene #646: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TRIM27 MUTATED	5	0	0
TRIM27 WILD-TYPE	152	63	69

'TRIM27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.68

Table S6353. Gene #646: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TRIM27 MUTATED	0	0	3	1	0	0
TRIM27 WILD-TYPE	33	19	56	38	16	45

'TRIM27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 0.79

Table S6354. Gene #646: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TRIM27 MUTATED	2	0	1	1	0	0
TRIM27 WILD-TYPE	45	39	34	31	23	35

'KYNU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.27

Table S6355. Gene #647: 'KYNU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KYNU MUTATED	1	9	0	0	0
KYNU WILD-TYPE	78	117	27	43	12

'KYNU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.7

Table S6356. Gene #647: 'KYNU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KYNU MUTATED	1	2	2	2
KYNU WILD-TYPE	70	74	32	61

'KYNU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S6357. Gene #647: 'KYNU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KYNU MUTATED	1	3	3	0	3
KYNU WILD-TYPE	15	59	48	65	52

'KYNU MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.75

Table S6358. Gene #647: 'KYNU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KYNU MUTATED	4	3	2	1
KYNU WILD-TYPE	94	41	48	56

'KYNU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00536 (Fisher's exact test), Q value = 0.047

Table S6359. Gene #647: 'KYNU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KYNU MUTATED	7	0	0	2	1
KYNU WILD-TYPE	55	59	40	35	58

Figure S2120. Get High-res Image Gene #647: 'KYNU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KYNU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S6360. Gene #647: 'KYNU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KYNU MUTATED	4	0	6
KYNU WILD-TYPE	102	54	91

'KYNU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.21

Table S6361. Gene #647: 'KYNU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KYNU MUTATED	8	1	1
KYNU WILD-TYPE	115	94	70

'KYNU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.49

Table S6362. Gene #647: 'KYNU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KYNU MUTATED	8	1	1
KYNU WILD-TYPE	149	62	68

'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.66

Table S6363. Gene #647: 'KYNU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KYNU MUTATED	2	0	3	1	0	0
KYNU WILD-TYPE	31	19	56	38	16	45

'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S6364. Gene #647: 'KYNU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KYNU MUTATED	1	0	3	1	1	0
KYNU WILD-TYPE	46	39	32	31	22	35

'TM6SF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S6365. Gene #648: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TM6SF1 MUTATED	0	6	0	0	0
TM6SF1 WILD-TYPE	79	120	27	43	12

'TM6SF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.23

Table S6366. Gene #648: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TM6SF1 MUTATED	0	3	1	0
TM6SF1 WILD-TYPE	71	73	33	63

'TM6SF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.14

Table S6367. Gene #648: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TM6SF1 MUTATED	0	2	4	0	0
TM6SF1 WILD-TYPE	16	60	47	65	55

Figure S2121. Get High-res Image Gene #648: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TM6SF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.1

Table S6368. Gene #648: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TM6SF1 MUTATED	1	4	1	0
TM6SF1 WILD-TYPE	97	40	49	57

Figure S2122. Get High-res Image Gene #648: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TM6SF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.18

Table S6369. Gene #648: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TM6SF1 MUTATED	4	0	1	1	0
TM6SF1 WILD-TYPE	58	59	39	36	59

'TM6SF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S6370. Gene #648: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TM6SF1 MUTATED	1	0	5
TM6SF1 WILD-TYPE	105	54	92

'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.29

Table S6371. Gene #648: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TM6SF1 MUTATED	5	1	0
TM6SF1 WILD-TYPE	118	94	71

'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S6372. Gene #648: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TM6SF1 MUTATED	6	0	0
TM6SF1 WILD-TYPE	151	63	69

'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 0.84

Table S6373. Gene #648: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TM6SF1 MUTATED	0	0	2	1	0	0
TM6SF1 WILD-TYPE	33	19	57	38	16	45

'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0744 (Fisher's exact test), Q value = 0.2

Table S6374. Gene #648: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TM6SF1 MUTATED	0	0	2	0	1	0
TM6SF1 WILD-TYPE	47	39	33	32	22	35

'WDTC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00295 (Fisher's exact test), Q value = 0.034

Table S6375. Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WDTC1 MUTATED	0	13	1	0	1
WDTC1 WILD-TYPE	79	113	26	43	11

Figure S2123. Get High-res Image Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WDTC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00469 (Fisher's exact test), Q value = 0.043

Table S6376. Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WDTC1 MUTATED	0	9	3	2
WDTC1 WILD-TYPE	71	67	31	61

Figure S2124. Get High-res Image Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WDTC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 0.14

Table S6377. Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WDTC1 MUTATED	1	7	3	0	2
WDTC1 WILD-TYPE	15	55	48	65	53

Figure S2125. Get High-res Image Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WDTC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00191 (Fisher's exact test), Q value = 0.027

Table S6378. Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WDTC1 MUTATED	2	6	5	0
WDTC1 WILD-TYPE	96	38	45	57

Figure S2126. Get High-res Image Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WDTC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S6379. Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WDTC1 MUTATED	10	0	0	5	0
WDTC1 WILD-TYPE	52	59	40	32	59

Figure S2127. Get High-res Image Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WDTC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00034 (Fisher's exact test), Q value = 0.0095

Table S6380. Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WDTC1 MUTATED	2	0	13
WDTC1 WILD-TYPE	104	54	84

Figure S2128. Get High-res Image Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WDTC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00221 (Fisher's exact test), Q value = 0.03

Table S6381. Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WDTC1 MUTATED	13	1	1
WDTC1 WILD-TYPE	110	94	70

Figure S2129. Get High-res Image Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WDTC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00465 (Fisher's exact test), Q value = 0.043

Table S6382. Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WDTC1 MUTATED	14	1	0
WDTC1 WILD-TYPE	143	62	69

Figure S2130. Get High-res Image Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WDTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0918 (Fisher's exact test), Q value = 0.22

Table S6383. Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WDTC1 MUTATED	1	3	5	3	0	0
WDTC1 WILD-TYPE	32	16	54	36	16	45

'WDTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 0.15

Table S6384. Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WDTC1 MUTATED	5	0	4	1	2	0
WDTC1 WILD-TYPE	42	39	31	31	21	35

Figure S2131. Get High-res Image Gene #649: 'WDTC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NEK8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0702 (Fisher's exact test), Q value = 0.19

Table S6385. Gene #650: 'NEK8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NEK8 MUTATED	1	9	0	0	1
NEK8 WILD-TYPE	78	117	27	43	11

'NEK8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.81

Table S6386. Gene #650: 'NEK8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NEK8 MUTATED	2	5	1	2
NEK8 WILD-TYPE	69	71	33	61

'NEK8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0528 (Fisher's exact test), Q value = 0.16

Table S6387. Gene #650: 'NEK8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NEK8 MUTATED	1	5	4	0	1
NEK8 WILD-TYPE	15	57	47	65	54

'NEK8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.14

Table S6388. Gene #650: 'NEK8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NEK8 MUTATED	3	3	5	0
NEK8 WILD-TYPE	95	41	45	57

Figure S2132. Get High-res Image Gene #650: 'NEK8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NEK8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00914 (Fisher's exact test), Q value = 0.063

Table S6389. Gene #650: 'NEK8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NEK8 MUTATED	6	0	1	1	0
NEK8 WILD-TYPE	56	59	39	36	59

Figure S2133. Get High-res Image Gene #650: 'NEK8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NEK8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0754 (Fisher's exact test), Q value = 0.2

Table S6390. Gene #650: 'NEK8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NEK8 MUTATED	2	0	6
NEK8 WILD-TYPE	104	54	91

'NEK8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00852 (Fisher's exact test), Q value = 0.061

Table S6391. Gene #650: 'NEK8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NEK8 MUTATED	9	0	2
NEK8 WILD-TYPE	114	95	69

Figure S2134. Get High-res Image Gene #650: 'NEK8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NEK8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.15

Table S6392. Gene #650: 'NEK8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NEK8 MUTATED	10	0	1
NEK8 WILD-TYPE	147	63	68

Figure S2135. Get High-res Image Gene #650: 'NEK8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NEK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.42

Table S6393. Gene #650: 'NEK8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NEK8 MUTATED	2	2	3	1	0	0
NEK8 WILD-TYPE	31	17	56	38	16	45

'NEK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 0.67

Table S6394. Gene #650: 'NEK8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NEK8 MUTATED	2	0	3	1	1	1
NEK8 WILD-TYPE	45	39	32	31	22	34

'CCDC27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.68

Table S6395. Gene #651: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CCDC27 MUTATED	1	5	0	0	0
CCDC27 WILD-TYPE	78	121	27	43	12

'CCDC27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.45

Table S6396. Gene #651: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CCDC27 MUTATED	0	3	0	2
CCDC27 WILD-TYPE	71	73	34	61

'CCDC27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.33

Table S6397. Gene #651: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CCDC27 MUTATED	1	1	3	1	0
CCDC27 WILD-TYPE	15	61	48	64	55

'CCDC27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.6

Table S6398. Gene #651: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CCDC27 MUTATED	3	2	1	0
CCDC27 WILD-TYPE	95	42	49	57

'CCDC27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.63

Table S6399. Gene #651: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CCDC27 MUTATED	3	1	1	1	0
CCDC27 WILD-TYPE	59	58	39	36	59

'CCDC27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.57

Table S6400. Gene #651: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CCDC27 MUTATED	4	0	2
CCDC27 WILD-TYPE	102	54	95

'CCDC27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.48

Table S6401. Gene #651: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CCDC27 MUTATED	4	2	0
CCDC27 WILD-TYPE	119	93	71

'CCDC27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6402. Gene #651: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CCDC27 MUTATED	4	1	1
CCDC27 WILD-TYPE	153	62	68

'CCDC27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 0.93

Table S6403. Gene #651: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CCDC27 MUTATED	0	0	3	1	0	1
CCDC27 WILD-TYPE	33	19	56	38	16	44

'CCDC27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 0.86

Table S6404. Gene #651: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CCDC27 MUTATED	1	1	2	1	0	0
CCDC27 WILD-TYPE	46	38	33	31	23	35

'THYN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.62

Table S6405. Gene #652: 'THYN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
THYN1 MUTATED	1	4	1	1	1
THYN1 WILD-TYPE	78	122	26	42	11

'THYN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.38

Table S6406. Gene #652: 'THYN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
THYN1 MUTATED	1	5	0	1
THYN1 WILD-TYPE	70	71	34	62

'THYN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.41

Table S6407. Gene #652: 'THYN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
THYN1 MUTATED	1	3	1	0	2
THYN1 WILD-TYPE	15	59	50	65	53

'THYN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.62

Table S6408. Gene #652: 'THYN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
THYN1 MUTATED	4	1	2	0
THYN1 WILD-TYPE	94	43	48	57

'THYN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.64

Table S6409. Gene #652: 'THYN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
THYN1 MUTATED	3	0	1	1	1
THYN1 WILD-TYPE	59	59	39	36	58

'THYN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.41

Table S6410. Gene #652: 'THYN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
THYN1 MUTATED	2	0	4
THYN1 WILD-TYPE	104	54	93

'THYN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.37

Table S6411. Gene #652: 'THYN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
THYN1 MUTATED	6	1	1
THYN1 WILD-TYPE	117	94	70

'THYN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.79

Table S6412. Gene #652: 'THYN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
THYN1 MUTATED	6	1	1
THYN1 WILD-TYPE	151	62	68

'THYN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.66

Table S6413. Gene #652: 'THYN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
THYN1 MUTATED	1	0	3	1	1	0
THYN1 WILD-TYPE	32	19	56	38	15	45

'THYN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.66

Table S6414. Gene #652: 'THYN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
THYN1 MUTATED	1	0	2	2	0	1
THYN1 WILD-TYPE	46	39	33	30	23	34

'TRIP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.55

Table S6415. Gene #653: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TRIP11 MUTATED	3	8	2	0	0
TRIP11 WILD-TYPE	76	118	25	43	12

'TRIP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.57

Table S6416. Gene #653: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TRIP11 MUTATED	2	5	3	2
TRIP11 WILD-TYPE	69	71	31	61

'TRIP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.093

Table S6417. Gene #653: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TRIP11 MUTATED	3	2	5	1	1
TRIP11 WILD-TYPE	13	60	46	64	54

Figure S2136. Get High-res Image Gene #653: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TRIP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.68

Table S6418. Gene #653: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TRIP11 MUTATED	6	3	2	1
TRIP11 WILD-TYPE	92	41	48	56

'TRIP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.61

Table S6419. Gene #653: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TRIP11 MUTATED	5	1	1	1	2
TRIP11 WILD-TYPE	57	58	39	36	57

'TRIP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.41

Table S6420. Gene #653: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TRIP11 MUTATED	5	0	5
TRIP11 WILD-TYPE	101	54	92

'TRIP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.8

Table S6421. Gene #653: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TRIP11 MUTATED	7	4	2
TRIP11 WILD-TYPE	116	91	69

'TRIP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 0.86

Table S6422. Gene #653: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TRIP11 MUTATED	7	2	4
TRIP11 WILD-TYPE	150	61	65

'TRIP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.67

Table S6423. Gene #653: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TRIP11 MUTATED	2	1	6	1	1	1
TRIP11 WILD-TYPE	31	18	53	38	15	44

'TRIP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.77

Table S6424. Gene #653: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TRIP11 MUTATED	3	1	4	2	1	1
TRIP11 WILD-TYPE	44	38	31	30	22	34

'KIAA0586 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.64

Table S6425. Gene #654: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA0586 MUTATED	2	7	1	0	0
KIAA0586 WILD-TYPE	77	119	26	43	12

'KIAA0586 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.78

Table S6426. Gene #654: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA0586 MUTATED	2	4	0	2
KIAA0586 WILD-TYPE	69	72	34	61

'KIAA0586 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00708 (Fisher's exact test), Q value = 0.055

Table S6427. Gene #654: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIAA0586 MUTATED	2	3	0	0	5
KIAA0586 WILD-TYPE	14	59	51	65	50

Figure S2137. Get High-res Image Gene #654: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA0586 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.49

Table S6428. Gene #654: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIAA0586 MUTATED	3	4	2	1
KIAA0586 WILD-TYPE	95	40	48	56

'KIAA0586 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.48

Table S6429. Gene #654: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIAA0586 MUTATED	4	0	1	1	2
KIAA0586 WILD-TYPE	58	59	39	36	57

'KIAA0586 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.48

Table S6430. Gene #654: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIAA0586 MUTATED	5	0	3
KIAA0586 WILD-TYPE	101	54	94

'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0824 (Fisher's exact test), Q value = 0.21

Table S6431. Gene #654: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIAA0586 MUTATED	8	1	1
KIAA0586 WILD-TYPE	115	94	70

'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.49

Table S6432. Gene #654: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIAA0586 MUTATED	8	1	1
KIAA0586 WILD-TYPE	149	62	68

'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.74

Table S6433. Gene #654: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIAA0586 MUTATED	3	1	2	1	0	1
KIAA0586 WILD-TYPE	30	18	57	38	16	44

'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.63

Table S6434. Gene #654: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIAA0586 MUTATED	3	0	2	2	0	1
KIAA0586 WILD-TYPE	44	39	33	30	23	34

'PPM1H MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.37

Table S6435. Gene #655: 'PPM1H MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PPM1H MUTATED	0	6	0	2	0
PPM1H WILD-TYPE	79	120	27	41	12

'PPM1H MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.56

Table S6436. Gene #655: 'PPM1H MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PPM1H MUTATED	1	3	1	0
PPM1H WILD-TYPE	70	73	33	63

'PPM1H MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.31

Table S6437. Gene #655: 'PPM1H MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PPM1H MUTATED	0	3	1	0	4
PPM1H WILD-TYPE	16	59	50	65	51

'PPM1H MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S6438. Gene #655: 'PPM1H MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PPM1H MUTATED	0	8	0	0
PPM1H WILD-TYPE	98	36	50	57

Figure S2138. Get High-res Image Gene #655: 'PPM1H MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PPM1H MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0671 (Fisher's exact test), Q value = 0.19

Table S6439. Gene #655: 'PPM1H MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PPM1H MUTATED	4	0	2	1	0
PPM1H WILD-TYPE	58	59	38	36	59

'PPM1H MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.27

Table S6440. Gene #655: 'PPM1H MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PPM1H MUTATED	2	0	5
PPM1H WILD-TYPE	104	54	92

'PPM1H MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.1

Table S6441. Gene #655: 'PPM1H MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PPM1H MUTATED	7	0	1
PPM1H WILD-TYPE	116	95	70

Figure S2139. Get High-res Image Gene #655: 'PPM1H MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PPM1H MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0449 (Fisher's exact test), Q value = 0.15

Table S6442. Gene #655: 'PPM1H MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PPM1H MUTATED	8	0	0
PPM1H WILD-TYPE	149	63	69

Figure S2140. Get High-res Image Gene #655: 'PPM1H MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PPM1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S6443. Gene #655: 'PPM1H MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PPM1H MUTATED	1	1	0	2	0	0
PPM1H WILD-TYPE	32	18	59	37	16	45

'PPM1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.35

Table S6444. Gene #655: 'PPM1H MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PPM1H MUTATED	3	0	0	1	0	0
PPM1H WILD-TYPE	44	39	35	31	23	35

'COL20A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.34

Table S6445. Gene #656: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
COL20A1 MUTATED	2	12	2	1	1
COL20A1 WILD-TYPE	77	114	25	42	11

'COL20A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.074

Table S6446. Gene #656: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
COL20A1 MUTATED	2	11	0	3
COL20A1 WILD-TYPE	69	65	34	60

Figure S2141. Get High-res Image Gene #656: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'COL20A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S6447. Gene #656: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
COL20A1 MUTATED	0	7	2	1	5
COL20A1 WILD-TYPE	16	55	49	64	50

'COL20A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.076

Table S6448. Gene #656: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
COL20A1 MUTATED	3	7	4	1
COL20A1 WILD-TYPE	95	37	46	56

Figure S2142. Get High-res Image Gene #656: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'COL20A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 0.14

Table S6449. Gene #656: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
COL20A1 MUTATED	9	3	0	2	2
COL20A1 WILD-TYPE	53	56	40	35	57

Figure S2143. Get High-res Image Gene #656: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'COL20A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.26

Table S6450. Gene #656: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
COL20A1 MUTATED	3	4	9
COL20A1 WILD-TYPE	103	50	88

'COL20A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.45

Table S6451. Gene #656: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
COL20A1 MUTATED	11	4	3
COL20A1 WILD-TYPE	112	91	68

'COL20A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.55

Table S6452. Gene #656: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
COL20A1 MUTATED	12	4	2
COL20A1 WILD-TYPE	145	59	67

'COL20A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.73

Table S6453. Gene #656: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
COL20A1 MUTATED	4	2	3	4	0	3
COL20A1 WILD-TYPE	29	17	56	35	16	42

'COL20A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S6454. Gene #656: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
COL20A1 MUTATED	5	3	3	2	1	2
COL20A1 WILD-TYPE	42	36	32	30	22	33

'KIF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.37

Table S6455. Gene #657: 'KIF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIF6 MUTATED	0	5	1	0	0
KIF6 WILD-TYPE	79	121	26	43	12

'KIF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.56

Table S6456. Gene #657: 'KIF6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIF6 MUTATED	1	3	1	0
KIF6 WILD-TYPE	70	73	33	63

'KIF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 0.16

Table S6457. Gene #657: 'KIF6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIF6 MUTATED	0	0	3	0	3
KIF6 WILD-TYPE	16	62	48	65	52

'KIF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.68

Table S6458. Gene #657: 'KIF6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIF6 MUTATED	3	2	0	1
KIF6 WILD-TYPE	95	42	50	56

'KIF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.32

Table S6459. Gene #657: 'KIF6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIF6 MUTATED	4	2	0	1	0
KIF6 WILD-TYPE	58	57	40	36	59

'KIF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 0.78

Table S6460. Gene #657: 'KIF6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIF6 MUTATED	2	2	3
KIF6 WILD-TYPE	104	52	94

'KIF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.48

Table S6461. Gene #657: 'KIF6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIF6 MUTATED	4	3	0
KIF6 WILD-TYPE	119	92	71

'KIF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S6462. Gene #657: 'KIF6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIF6 MUTATED	4	3	0
KIF6 WILD-TYPE	153	60	69

'KIF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 0.85

Table S6463. Gene #657: 'KIF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIF6 MUTATED	1	0	1	0	0	2
KIF6 WILD-TYPE	32	19	58	39	16	43

'KIF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 0.92

Table S6464. Gene #657: 'KIF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIF6 MUTATED	1	1	1	0	1	0
KIF6 WILD-TYPE	46	38	34	32	22	35

'POMT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0583 (Fisher's exact test), Q value = 0.17

Table S6465. Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
POMT1 MUTATED	0	9	1	1	1
POMT1 WILD-TYPE	79	117	26	42	11

'POMT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.12

Table S6466. Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
POMT1 MUTATED	0	7	2	2
POMT1 WILD-TYPE	71	69	32	61

Figure S2144. Get High-res Image Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'POMT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S6467. Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
POMT1 MUTATED	1	4	0	1	2
POMT1 WILD-TYPE	15	58	51	64	53

'POMT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0683 (Fisher's exact test), Q value = 0.19

Table S6468. Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
POMT1 MUTATED	1	4	2	1
POMT1 WILD-TYPE	97	40	48	56

'POMT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.0086

Table S6469. Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
POMT1 MUTATED	9	0	1	1	0
POMT1 WILD-TYPE	53	59	39	36	59

Figure S2145. Get High-res Image Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'POMT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.038 (Fisher's exact test), Q value = 0.14

Table S6470. Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
POMT1 MUTATED	3	0	8
POMT1 WILD-TYPE	103	54	89

Figure S2146. Get High-res Image Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'POMT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.092

Table S6471. Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
POMT1 MUTATED	10	1	1
POMT1 WILD-TYPE	113	94	70

Figure S2147. Get High-res Image Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'POMT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0214 (Fisher's exact test), Q value = 0.099

Table S6472. Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
POMT1 MUTATED	11	1	0
POMT1 WILD-TYPE	146	62	69

Figure S2148. Get High-res Image Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'POMT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.39

Table S6473. Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
POMT1 MUTATED	1	2	4	3	0	0
POMT1 WILD-TYPE	32	17	55	36	16	45

'POMT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0863 (Fisher's exact test), Q value = 0.21

Table S6474. Gene #658: 'POMT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
POMT1 MUTATED	4	0	4	1	1	0
POMT1 WILD-TYPE	43	39	31	31	22	35

'MYO7A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.47

Table S6475. Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MYO7A MUTATED	1	9	1	3	0
MYO7A WILD-TYPE	78	117	26	40	12

'MYO7A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.075

Table S6476. Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MYO7A MUTATED	3	9	1	0
MYO7A WILD-TYPE	68	67	33	63

Figure S2149. Get High-res Image Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MYO7A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0413 (Fisher's exact test), Q value = 0.14

Table S6477. Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MYO7A MUTATED	0	3	6	0	3
MYO7A WILD-TYPE	16	59	45	65	52

Figure S2150. Get High-res Image Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MYO7A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00788 (Fisher's exact test), Q value = 0.058

Table S6478. Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MYO7A MUTATED	3	7	1	1
MYO7A WILD-TYPE	95	37	49	56

Figure S2151. Get High-res Image Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MYO7A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.076

Table S6479. Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MYO7A MUTATED	4	3	1	6	0
MYO7A WILD-TYPE	58	56	39	31	59

Figure S2152. Get High-res Image Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MYO7A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.16

Table S6480. Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MYO7A MUTATED	2	3	9
MYO7A WILD-TYPE	104	51	88

'MYO7A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.33

Table S6481. Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MYO7A MUTATED	10	3	2
MYO7A WILD-TYPE	113	92	69

'MYO7A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S6482. Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MYO7A MUTATED	12	1	2
MYO7A WILD-TYPE	145	62	67

'MYO7A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.12

Table S6483. Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MYO7A MUTATED	3	4	1	2	0	1
MYO7A WILD-TYPE	30	15	58	37	16	44

Figure S2153. Get High-res Image Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MYO7A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.38

Table S6484. Gene #659: 'MYO7A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MYO7A MUTATED	5	1	0	3	1	1
MYO7A WILD-TYPE	42	38	35	29	22	34

'EPB41L5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S6485. Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EPB41L5 MUTATED	0	7	1	0	0
EPB41L5 WILD-TYPE	79	119	26	43	12

'EPB41L5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.25

Table S6486. Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EPB41L5 MUTATED	1	5	1	0
EPB41L5 WILD-TYPE	70	71	33	63

'EPB41L5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.6

Table S6487. Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EPB41L5 MUTATED	0	3	2	0	2
EPB41L5 WILD-TYPE	16	59	49	65	53

'EPB41L5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.012

Table S6488. Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EPB41L5 MUTATED	0	5	2	0
EPB41L5 WILD-TYPE	98	39	48	57

Figure S2154. Get High-res Image Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPB41L5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.1

Table S6489. Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EPB41L5 MUTATED	5	0	1	1	0
EPB41L5 WILD-TYPE	57	59	39	36	59

Figure S2155. Get High-res Image Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPB41L5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00121 (Fisher's exact test), Q value = 0.02

Table S6490. Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EPB41L5 MUTATED	0	0	7
EPB41L5 WILD-TYPE	106	54	90

Figure S2156. Get High-res Image Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.13

Table S6491. Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EPB41L5 MUTATED	7	1	0
EPB41L5 WILD-TYPE	116	94	71

Figure S2157. Get High-res Image Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0453 (Fisher's exact test), Q value = 0.15

Table S6492. Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EPB41L5 MUTATED	8	0	0
EPB41L5 WILD-TYPE	149	63	69

Figure S2158. Get High-res Image Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 0.21

Table S6493. Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EPB41L5 MUTATED	1	3	2	1	0	0
EPB41L5 WILD-TYPE	32	16	57	38	16	45

'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.53

Table S6494. Gene #660: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EPB41L5 MUTATED	3	0	2	1	1	0
EPB41L5 WILD-TYPE	44	39	33	31	22	35

'MAGEE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 0.18

Table S6495. Gene #661: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAGEE2 MUTATED	0	3	2	3	0
MAGEE2 WILD-TYPE	79	123	25	40	12

'MAGEE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0913 (Fisher's exact test), Q value = 0.22

Table S6496. Gene #661: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAGEE2 MUTATED	0	5	1	1
MAGEE2 WILD-TYPE	71	71	33	62

'MAGEE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.78

Table S6497. Gene #661: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MAGEE2 MUTATED	1	3	1	2	1
MAGEE2 WILD-TYPE	15	59	50	63	54

'MAGEE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 0.9

Table S6498. Gene #661: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MAGEE2 MUTATED	3	2	2	1
MAGEE2 WILD-TYPE	95	42	48	56

'MAGEE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.51

Table S6499. Gene #661: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MAGEE2 MUTATED	2	2	2	0	0
MAGEE2 WILD-TYPE	60	57	38	37	59

'MAGEE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0714 (Fisher's exact test), Q value = 0.19

Table S6500. Gene #661: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MAGEE2 MUTATED	0	2	4
MAGEE2 WILD-TYPE	106	52	93

'MAGEE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S6501. Gene #661: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MAGEE2 MUTATED	5	3	0
MAGEE2 WILD-TYPE	118	92	71

'MAGEE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 0.78

Table S6502. Gene #661: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MAGEE2 MUTATED	6	1	1
MAGEE2 WILD-TYPE	151	62	68

'MAGEE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.79

Table S6503. Gene #661: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MAGEE2 MUTATED	0	0	2	1	0	3
MAGEE2 WILD-TYPE	33	19	57	38	16	42

'MAGEE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 0.92

Table S6504. Gene #661: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MAGEE2 MUTATED	2	2	1	1	0	0
MAGEE2 WILD-TYPE	45	37	34	31	23	35

'ARHGAP29 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S6505. Gene #662: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARHGAP29 MUTATED	1	7	0	0	1
ARHGAP29 WILD-TYPE	78	119	27	43	11

'ARHGAP29 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.094

Table S6506. Gene #662: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARHGAP29 MUTATED	1	6	0	0
ARHGAP29 WILD-TYPE	70	70	34	63

Figure S2159. Get High-res Image Gene #662: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARHGAP29 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 0.23

Table S6507. Gene #662: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ARHGAP29 MUTATED	0	5	1	0	1
ARHGAP29 WILD-TYPE	16	57	50	65	54

'ARHGAP29 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00183 (Fisher's exact test), Q value = 0.027

Table S6508. Gene #662: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ARHGAP29 MUTATED	0	3	4	0
ARHGAP29 WILD-TYPE	98	41	46	57

Figure S2160. Get High-res Image Gene #662: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARHGAP29 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S6509. Gene #662: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ARHGAP29 MUTATED	5	0	1	2	1
ARHGAP29 WILD-TYPE	57	59	39	35	58

'ARHGAP29 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00685 (Fisher's exact test), Q value = 0.054

Table S6510. Gene #662: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ARHGAP29 MUTATED	1	0	8
ARHGAP29 WILD-TYPE	105	54	89

Figure S2161. Get High-res Image Gene #662: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARHGAP29 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.13

Table S6511. Gene #662: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ARHGAP29 MUTATED	7	0	2
ARHGAP29 WILD-TYPE	116	95	69

Figure S2162. Get High-res Image Gene #662: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARHGAP29 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.28

Table S6512. Gene #662: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ARHGAP29 MUTATED	8	0	1
ARHGAP29 WILD-TYPE	149	63	68

'ARHGAP29 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.66

Table S6513. Gene #662: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ARHGAP29 MUTATED	2	1	2	1	0	0
ARHGAP29 WILD-TYPE	31	18	57	38	16	45

'ARHGAP29 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.33

Table S6514. Gene #662: 'ARHGAP29 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ARHGAP29 MUTATED	4	0	1	1	0	0
ARHGAP29 WILD-TYPE	43	39	34	31	23	35

'SLC23A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6515. Gene #663: 'SLC23A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC23A3 MUTATED	1	3	0	1	0
SLC23A3 WILD-TYPE	78	123	27	42	12

'SLC23A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.72

Table S6516. Gene #663: 'SLC23A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC23A3 MUTATED	1	2	1	0
SLC23A3 WILD-TYPE	70	74	33	63

'SLC23A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.33

Table S6517. Gene #663: 'SLC23A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC23A3 MUTATED	0	2	0	0	3
SLC23A3 WILD-TYPE	16	60	51	65	52

'SLC23A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00738 (Fisher's exact test), Q value = 0.056

Table S6518. Gene #663: 'SLC23A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC23A3 MUTATED	1	4	0	0
SLC23A3 WILD-TYPE	97	40	50	57

Figure S2163. Get High-res Image Gene #663: 'SLC23A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC23A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S6519. Gene #663: 'SLC23A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC23A3 MUTATED	2	0	1	1	1
SLC23A3 WILD-TYPE	60	59	39	36	58

'SLC23A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.65

Table S6520. Gene #663: 'SLC23A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC23A3 MUTATED	2	0	3
SLC23A3 WILD-TYPE	104	54	94

'SLC23A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.41

Table S6521. Gene #663: 'SLC23A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC23A3 MUTATED	3	0	2
SLC23A3 WILD-TYPE	120	95	69

'SLC23A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.4

Table S6522. Gene #663: 'SLC23A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC23A3 MUTATED	5	0	0
SLC23A3 WILD-TYPE	152	63	69

'SLC23A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.37

Table S6523. Gene #663: 'SLC23A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC23A3 MUTATED	0	0	1	3	0	0
SLC23A3 WILD-TYPE	33	19	58	36	16	45

'SLC23A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 0.79

Table S6524. Gene #663: 'SLC23A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC23A3 MUTATED	2	0	1	1	0	0
SLC23A3 WILD-TYPE	45	39	34	31	23	35

'WDR60 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.21

Table S6525. Gene #664: 'WDR60 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WDR60 MUTATED	0	6	2	0	0
WDR60 WILD-TYPE	79	120	25	43	12

'WDR60 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.1

Table S6526. Gene #664: 'WDR60 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WDR60 MUTATED	0	4	2	0
WDR60 WILD-TYPE	71	72	32	63

Figure S2164. Get High-res Image Gene #664: 'WDR60 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WDR60 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 0.83

Table S6527. Gene #664: 'WDR60 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WDR60 MUTATED	0	2	1	1	3
WDR60 WILD-TYPE	16	60	50	64	52

'WDR60 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.067

Table S6528. Gene #664: 'WDR60 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WDR60 MUTATED	0	4	2	1
WDR60 WILD-TYPE	98	40	48	56

Figure S2165. Get High-res Image Gene #664: 'WDR60 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WDR60 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S6529. Gene #664: 'WDR60 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WDR60 MUTATED	4	1	0	2	0
WDR60 WILD-TYPE	58	58	40	35	59

'WDR60 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.3

Table S6530. Gene #664: 'WDR60 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WDR60 MUTATED	1	1	5
WDR60 WILD-TYPE	105	53	92

'WDR60 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.3

Table S6531. Gene #664: 'WDR60 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WDR60 MUTATED	6	2	0
WDR60 WILD-TYPE	117	93	71

'WDR60 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.31

Table S6532. Gene #664: 'WDR60 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WDR60 MUTATED	7	1	0
WDR60 WILD-TYPE	150	62	69

'WDR60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.16

Table S6533. Gene #664: 'WDR60 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WDR60 MUTATED	1	3	1	0	0	1
WDR60 WILD-TYPE	32	16	58	39	16	44

'WDR60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 0.84

Table S6534. Gene #664: 'WDR60 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WDR60 MUTATED	2	1	1	2	0	0
WDR60 WILD-TYPE	45	38	34	30	23	35

'GCDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.34

Table S6535. Gene #665: 'GCDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GCDH MUTATED	0	7	0	1	0
GCDH WILD-TYPE	79	119	27	42	12

'GCDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.45

Table S6536. Gene #665: 'GCDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GCDH MUTATED	0	3	0	2
GCDH WILD-TYPE	71	73	34	61

'GCDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.31

Table S6537. Gene #665: 'GCDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GCDH MUTATED	0	3	1	0	4
GCDH WILD-TYPE	16	59	50	65	51

'GCDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.075

Table S6538. Gene #665: 'GCDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GCDH MUTATED	2	5	1	0
GCDH WILD-TYPE	96	39	49	57

Figure S2166. Get High-res Image Gene #665: 'GCDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GCDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.077

Table S6539. Gene #665: 'GCDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GCDH MUTATED	5	0	1	0	0
GCDH WILD-TYPE	57	59	39	37	59

Figure S2167. Get High-res Image Gene #665: 'GCDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GCDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.24

Table S6540. Gene #665: 'GCDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GCDH MUTATED	1	0	5
GCDH WILD-TYPE	105	54	92

'GCDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00262 (Fisher's exact test), Q value = 0.032

Table S6541. Gene #665: 'GCDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GCDH MUTATED	8	0	0
GCDH WILD-TYPE	115	95	71

Figure S2168. Get High-res Image Gene #665: 'GCDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GCDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 0.79

Table S6542. Gene #665: 'GCDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GCDH MUTATED	6	1	1
GCDH WILD-TYPE	151	62	68

'GCDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 0.91

Table S6543. Gene #665: 'GCDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GCDH MUTATED	1	0	2	1	0	0
GCDH WILD-TYPE	32	19	57	38	16	45

'GCDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.46

Table S6544. Gene #665: 'GCDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GCDH MUTATED	2	0	2	0	0	0
GCDH WILD-TYPE	45	39	33	32	23	35

'PLEKHH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0562 (Fisher's exact test), Q value = 0.17

Table S6545. Gene #666: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLEKHH3 MUTATED	0	7	1	0	1
PLEKHH3 WILD-TYPE	79	119	26	43	11

'PLEKHH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.61

Table S6546. Gene #666: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLEKHH3 MUTATED	1	4	0	2
PLEKHH3 WILD-TYPE	70	72	34	61

'PLEKHH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.14

Table S6547. Gene #666: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PLEKHH3 MUTATED	2	4	1	0	1
PLEKHH3 WILD-TYPE	14	58	50	65	54

Figure S2169. Get High-res Image Gene #666: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PLEKHH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.36

Table S6548. Gene #666: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PLEKHH3 MUTATED	3	3	2	0
PLEKHH3 WILD-TYPE	95	41	48	57

'PLEKHH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00848 (Fisher's exact test), Q value = 0.061

Table S6549. Gene #666: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PLEKHH3 MUTATED	5	0	0	2	0
PLEKHH3 WILD-TYPE	57	59	40	35	59

Figure S2170. Get High-res Image Gene #666: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PLEKHH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.27

Table S6550. Gene #666: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PLEKHH3 MUTATED	2	0	5
PLEKHH3 WILD-TYPE	104	54	92

'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00132 (Fisher's exact test), Q value = 0.021

Table S6551. Gene #666: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PLEKHH3 MUTATED	9	0	0
PLEKHH3 WILD-TYPE	114	95	71

Figure S2171. Get High-res Image Gene #666: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S6552. Gene #666: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PLEKHH3 MUTATED	7	1	1
PLEKHH3 WILD-TYPE	150	62	68

'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.3

Table S6553. Gene #666: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PLEKHH3 MUTATED	0	1	5	1	0	0
PLEKHH3 WILD-TYPE	33	18	54	38	16	45

'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.1

Table S6554. Gene #666: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PLEKHH3 MUTATED	5	0	2	0	0	0
PLEKHH3 WILD-TYPE	42	39	33	32	23	35

Figure S2172. Get High-res Image Gene #666: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KRT222 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.53

Table S6555. Gene #667: 'KRT222 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KRT222 MUTATED	1	3	0	0	1
KRT222 WILD-TYPE	78	123	27	43	11

'KRT222 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 0.91

Table S6556. Gene #667: 'KRT222 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KRT222 MUTATED	1	2	0	0
KRT222 WILD-TYPE	70	74	34	63

'KRT222 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.69

Table S6557. Gene #667: 'KRT222 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KRT222 MUTATED	0	1	1	0	2
KRT222 WILD-TYPE	16	61	50	65	53

'KRT222 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.37

Table S6558. Gene #667: 'KRT222 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KRT222 MUTATED	2	2	0	0
KRT222 WILD-TYPE	96	42	50	57

'KRT222 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.79

Table S6559. Gene #667: 'KRT222 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KRT222 MUTATED	2	0	1	0	1
KRT222 WILD-TYPE	60	59	39	37	58

'KRT222 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 0.16

Table S6560. Gene #667: 'KRT222 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KRT222 MUTATED	0	0	4
KRT222 WILD-TYPE	106	54	93

Figure S2173. Get High-res Image Gene #667: 'KRT222 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KRT222 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.32

Table S6561. Gene #667: 'KRT222 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KRT222 MUTATED	4	0	1
KRT222 WILD-TYPE	119	95	70

'KRT222 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.79

Table S6562. Gene #667: 'KRT222 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KRT222 MUTATED	4	0	1
KRT222 WILD-TYPE	153	63	68

'KRT222 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 0.88

Table S6563. Gene #667: 'KRT222 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KRT222 MUTATED	1	0	1	1	0	0
KRT222 WILD-TYPE	32	19	58	38	16	45

'KRT222 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 0.89

Table S6564. Gene #667: 'KRT222 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KRT222 MUTATED	1	0	1	1	0	0
KRT222 WILD-TYPE	46	39	34	31	23	35

'MBL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.6

Table S6565. Gene #668: 'MBL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MBL2 MUTATED	0	4	0	0	0
MBL2 WILD-TYPE	79	122	27	43	12

'MBL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.72

Table S6566. Gene #668: 'MBL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MBL2 MUTATED	0	2	0	1
MBL2 WILD-TYPE	71	74	34	62

'MBL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.24

Table S6567. Gene #668: 'MBL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MBL2 MUTATED	3	0	0	1	0
MBL2 WILD-TYPE	59	59	40	36	59

'MBL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.57

Table S6568. Gene #668: 'MBL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MBL2 MUTATED	1	0	3
MBL2 WILD-TYPE	105	54	94

'MBL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0901 (Fisher's exact test), Q value = 0.22

Table S6569. Gene #668: 'MBL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MBL2 MUTATED	4	0	0
MBL2 WILD-TYPE	119	95	71

'MBL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 0.75

Table S6570. Gene #668: 'MBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MBL2 MUTATED	3	1	0
MBL2 WILD-TYPE	154	62	69

'MBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.69

Table S6571. Gene #668: 'MBL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MBL2 MUTATED	0	1	1	1	0	0
MBL2 WILD-TYPE	33	18	58	38	16	45

'MBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.71

Table S6572. Gene #668: 'MBL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MBL2 MUTATED	2	0	1	0	0	0
MBL2 WILD-TYPE	45	39	34	32	23	35

'TSPYL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.36

Table S6573. Gene #669: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TSPYL5 MUTATED	0	7	1	1	0
TSPYL5 WILD-TYPE	79	119	26	42	12

'TSPYL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.18

Table S6574. Gene #669: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TSPYL5 MUTATED	0	5	2	1
TSPYL5 WILD-TYPE	71	71	32	62

'TSPYL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.49

Table S6575. Gene #669: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TSPYL5 MUTATED	1	3	0	1	2
TSPYL5 WILD-TYPE	15	59	51	64	53

'TSPYL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 0.7

Table S6576. Gene #669: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TSPYL5 MUTATED	2	1	3	1
TSPYL5 WILD-TYPE	96	43	47	56

'TSPYL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.25

Table S6577. Gene #669: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TSPYL5 MUTATED	5	1	1	2	0
TSPYL5 WILD-TYPE	57	58	39	35	59

'TSPYL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S6578. Gene #669: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TSPYL5 MUTATED	3	0	6
TSPYL5 WILD-TYPE	103	54	91

'TSPYL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.099

Table S6579. Gene #669: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TSPYL5 MUTATED	8	1	0
TSPYL5 WILD-TYPE	115	94	71

Figure S2174. Get High-res Image Gene #669: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TSPYL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 0.099

Table S6580. Gene #669: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TSPYL5 MUTATED	9	0	0
TSPYL5 WILD-TYPE	148	63	69

Figure S2175. Get High-res Image Gene #669: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TSPYL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00911 (Fisher's exact test), Q value = 0.063

Table S6581. Gene #669: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TSPYL5 MUTATED	0	2	1	5	0	0
TSPYL5 WILD-TYPE	33	17	58	34	16	45

Figure S2176. Get High-res Image Gene #669: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TSPYL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0867 (Fisher's exact test), Q value = 0.21

Table S6582. Gene #669: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TSPYL5 MUTATED	2	0	1	2	3	0
TSPYL5 WILD-TYPE	45	39	34	30	20	35

'COX8C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.48

Table S6583. Gene #670: 'COX8C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
COX8C MUTATED	0	3	1	0	0
COX8C WILD-TYPE	79	123	26	43	12

'COX8C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 0.19

Table S6584. Gene #670: 'COX8C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
COX8C MUTATED	0	1	2	0
COX8C WILD-TYPE	71	75	32	63

'COX8C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 0.83

Table S6585. Gene #670: 'COX8C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
COX8C MUTATED	0	1	1	0	1
COX8C WILD-TYPE	16	61	50	65	54

'COX8C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.15

Table S6586. Gene #670: 'COX8C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
COX8C MUTATED	0	2	1	0
COX8C WILD-TYPE	98	42	49	57

Figure S2177. Get High-res Image Gene #670: 'COX8C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'COX8C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.18

Table S6587. Gene #670: 'COX8C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
COX8C MUTATED	3	0	0	0	0
COX8C WILD-TYPE	59	59	40	37	59

'COX8C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S6588. Gene #670: 'COX8C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
COX8C MUTATED	0	0	3
COX8C WILD-TYPE	106	54	94

'COX8C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.77

Table S6589. Gene #670: 'COX8C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
COX8C MUTATED	2	2	0
COX8C WILD-TYPE	121	93	71

'COX8C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.75

Table S6590. Gene #670: 'COX8C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
COX8C MUTATED	3	1	0
COX8C WILD-TYPE	154	62	69

'COX8C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.57

Table S6591. Gene #670: 'COX8C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
COX8C MUTATED	0	0	0	2	0	1
COX8C WILD-TYPE	33	19	59	37	16	44

'COX8C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.15

Table S6592. Gene #670: 'COX8C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
COX8C MUTATED	0	1	0	0	2	0
COX8C WILD-TYPE	47	38	35	32	21	35

Figure S2178. Get High-res Image Gene #670: 'COX8C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC6A11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.68

Table S6593. Gene #671: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC6A11 MUTATED	1	5	1	0	0
SLC6A11 WILD-TYPE	78	121	26	43	12

'SLC6A11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.33

Table S6594. Gene #671: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC6A11 MUTATED	0	2	2	1
SLC6A11 WILD-TYPE	71	74	32	62

'SLC6A11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.31

Table S6595. Gene #671: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC6A11 MUTATED	1	1	3	0	2
SLC6A11 WILD-TYPE	15	61	48	65	53

'SLC6A11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S6596. Gene #671: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC6A11 MUTATED	3	3	1	0
SLC6A11 WILD-TYPE	95	41	49	57

'SLC6A11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.35

Table S6597. Gene #671: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC6A11 MUTATED	3	0	0	2	1
SLC6A11 WILD-TYPE	59	59	40	35	58

'SLC6A11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.57

Table S6598. Gene #671: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC6A11 MUTATED	4	0	2
SLC6A11 WILD-TYPE	102	54	95

'SLC6A11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.18

Table S6599. Gene #671: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC6A11 MUTATED	6	1	0
SLC6A11 WILD-TYPE	117	94	71

'SLC6A11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0704 (Fisher's exact test), Q value = 0.19

Table S6600. Gene #671: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC6A11 MUTATED	7	0	0
SLC6A11 WILD-TYPE	150	63	69

'SLC6A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.31

Table S6601. Gene #671: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC6A11 MUTATED	0	0	4	0	0	0
SLC6A11 WILD-TYPE	33	19	55	39	16	45

'SLC6A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0804 (Fisher's exact test), Q value = 0.21

Table S6602. Gene #671: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC6A11 MUTATED	1	0	3	0	0	0
SLC6A11 WILD-TYPE	46	39	32	32	23	35

'IKBKAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.45

Table S6603. Gene #672: 'IKBKAP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IKBKAP MUTATED	2	9	0	1	1
IKBKAP WILD-TYPE	77	117	27	42	11

'IKBKAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.51

Table S6604. Gene #672: 'IKBKAP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IKBKAP MUTATED	1	5	2	4
IKBKAP WILD-TYPE	70	71	32	59

'IKBKAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0775 (Fisher's exact test), Q value = 0.2

Table S6605. Gene #672: 'IKBKAP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IKBKAP MUTATED	1	5	3	0	1
IKBKAP WILD-TYPE	15	57	48	65	54

'IKBKAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.59

Table S6606. Gene #672: 'IKBKAP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IKBKAP MUTATED	4	1	4	1
IKBKAP WILD-TYPE	94	43	46	56

'IKBKAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00906 (Fisher's exact test), Q value = 0.063

Table S6607. Gene #672: 'IKBKAP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IKBKAP MUTATED	8	1	0	0	3
IKBKAP WILD-TYPE	54	58	40	37	56

Figure S2179. Get High-res Image Gene #672: 'IKBKAP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IKBKAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.46

Table S6608. Gene #672: 'IKBKAP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IKBKAP MUTATED	4	1	7
IKBKAP WILD-TYPE	102	53	90

'IKBKAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.21

Table S6609. Gene #672: 'IKBKAP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IKBKAP MUTATED	9	1	3
IKBKAP WILD-TYPE	114	94	68

'IKBKAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.42

Table S6610. Gene #672: 'IKBKAP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IKBKAP MUTATED	10	1	2
IKBKAP WILD-TYPE	147	62	67

'IKBKAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.42

Table S6611. Gene #672: 'IKBKAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IKBKAP MUTATED	2	2	3	3	0	0
IKBKAP WILD-TYPE	31	17	56	36	16	45

'IKBKAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.4

Table S6612. Gene #672: 'IKBKAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IKBKAP MUTATED	3	0	3	3	0	1
IKBKAP WILD-TYPE	44	39	32	29	23	34

'DDX50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.21

Table S6613. Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DDX50 MUTATED	0	8	2	1	0
DDX50 WILD-TYPE	79	118	25	42	12

'DDX50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.082

Table S6614. Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DDX50 MUTATED	0	7	1	1
DDX50 WILD-TYPE	71	69	33	62

Figure S2180. Get High-res Image Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DDX50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.61

Table S6615. Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DDX50 MUTATED	1	1	3	1	2
DDX50 WILD-TYPE	15	61	48	64	53

'DDX50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.091

Table S6616. Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DDX50 MUTATED	1	5	1	1
DDX50 WILD-TYPE	97	39	49	56

Figure S2181. Get High-res Image Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DDX50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.069

Table S6617. Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DDX50 MUTATED	6	1	0	3	0
DDX50 WILD-TYPE	56	58	40	34	59

Figure S2182. Get High-res Image Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DDX50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0667 (Fisher's exact test), Q value = 0.19

Table S6618. Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DDX50 MUTATED	3	0	7
DDX50 WILD-TYPE	103	54	90

'DDX50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.14

Table S6619. Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DDX50 MUTATED	9	1	1
DDX50 WILD-TYPE	114	94	70

Figure S2183. Get High-res Image Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDX50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.14

Table S6620. Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DDX50 MUTATED	10	1	0
DDX50 WILD-TYPE	147	62	69

Figure S2184. Get High-res Image Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DDX50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.24

Table S6621. Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DDX50 MUTATED	0	3	2	3	0	1
DDX50 WILD-TYPE	33	16	57	36	16	44

'DDX50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.35

Table S6622. Gene #673: 'DDX50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DDX50 MUTATED	5	1	1	2	0	0
DDX50 WILD-TYPE	42	38	34	30	23	35

'CD3EAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0758 (Fisher's exact test), Q value = 0.2

Table S6623. Gene #674: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CD3EAP MUTATED	0	6	0	0	1
CD3EAP WILD-TYPE	79	120	27	43	11

'CD3EAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.42

Table S6624. Gene #674: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CD3EAP MUTATED	0	3	0	1
CD3EAP WILD-TYPE	71	73	34	62

'CD3EAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.64

Table S6625. Gene #674: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CD3EAP MUTATED	1	1	1	1	3
CD3EAP WILD-TYPE	15	61	50	64	52

'CD3EAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.4

Table S6626. Gene #674: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CD3EAP MUTATED	3	3	0	1
CD3EAP WILD-TYPE	95	41	50	56

'CD3EAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S6627. Gene #674: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CD3EAP MUTATED	4	1	1	0	0
CD3EAP WILD-TYPE	58	58	39	37	59

'CD3EAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.46

Table S6628. Gene #674: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CD3EAP MUTATED	1	1	4
CD3EAP WILD-TYPE	105	53	93

'CD3EAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.52

Table S6629. Gene #674: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CD3EAP MUTATED	5	1	1
CD3EAP WILD-TYPE	118	94	70

'CD3EAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.38

Table S6630. Gene #674: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CD3EAP MUTATED	6	1	0
CD3EAP WILD-TYPE	151	62	69

'CD3EAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.68

Table S6631. Gene #674: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CD3EAP MUTATED	0	0	2	2	0	0
CD3EAP WILD-TYPE	33	19	57	37	16	45

'CD3EAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.62

Table S6632. Gene #674: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CD3EAP MUTATED	1	0	2	1	0	0
CD3EAP WILD-TYPE	46	39	33	31	23	35

'NMNAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.65

Table S6633. Gene #675: 'NMNAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NMNAT1 MUTATED	0	3	0	0	0
NMNAT1 WILD-TYPE	79	123	27	43	12

'NMNAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.54

Table S6634. Gene #675: 'NMNAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NMNAT1 MUTATED	1	0	1	1	0
NMNAT1 WILD-TYPE	61	59	39	36	59

'NMNAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S6635. Gene #675: 'NMNAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NMNAT1 MUTATED	0	0	3
NMNAT1 WILD-TYPE	106	54	94

'NMNAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S6636. Gene #675: 'NMNAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NMNAT1 MUTATED	3	0	0
NMNAT1 WILD-TYPE	120	95	71

'NMNAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.56

Table S6637. Gene #675: 'NMNAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NMNAT1 MUTATED	3	0	0
NMNAT1 WILD-TYPE	154	63	69

'KIDINS220 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.6

Table S6638. Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIDINS220 MUTATED	2	10	1	2	1
KIDINS220 WILD-TYPE	77	116	26	41	11

'KIDINS220 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.25

Table S6639. Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIDINS220 MUTATED	4	7	0	1
KIDINS220 WILD-TYPE	67	69	34	62

'KIDINS220 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.18

Table S6640. Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KIDINS220 MUTATED	2	5	2	0	3
KIDINS220 WILD-TYPE	14	57	49	65	52

'KIDINS220 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 0.094

Table S6641. Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KIDINS220 MUTATED	3	5	4	0
KIDINS220 WILD-TYPE	95	39	46	57

Figure S2185. Get High-res Image Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIDINS220 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 0.23

Table S6642. Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KIDINS220 MUTATED	6	1	3	4	1
KIDINS220 WILD-TYPE	56	58	37	33	58

'KIDINS220 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.011

Table S6643. Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KIDINS220 MUTATED	2	0	13
KIDINS220 WILD-TYPE	104	54	84

Figure S2186. Get High-res Image Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIDINS220 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00094 (Fisher's exact test), Q value = 0.018

Table S6644. Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KIDINS220 MUTATED	13	0	3
KIDINS220 WILD-TYPE	110	95	68

Figure S2187. Get High-res Image Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIDINS220 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.076

Table S6645. Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KIDINS220 MUTATED	14	0	2
KIDINS220 WILD-TYPE	143	63	67

Figure S2188. Get High-res Image Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIDINS220 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.12

Table S6646. Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KIDINS220 MUTATED	1	4	3	2	0	0
KIDINS220 WILD-TYPE	32	15	56	37	16	45

Figure S2189. Get High-res Image Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIDINS220 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00937 (Fisher's exact test), Q value = 0.064

Table S6647. Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KIDINS220 MUTATED	7	0	2	1	0	0
KIDINS220 WILD-TYPE	40	39	33	31	23	35

Figure S2190. Get High-res Image Gene #676: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRIM46 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.46

Table S6648. Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TRIM46 MUTATED	1	8	1	1	1
TRIM46 WILD-TYPE	78	118	26	42	11

'TRIM46 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00314 (Fisher's exact test), Q value = 0.034

Table S6649. Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TRIM46 MUTATED	0	7	1	0
TRIM46 WILD-TYPE	71	69	33	63

Figure S2191. Get High-res Image Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRIM46 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.51

Table S6650. Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TRIM46 MUTATED	0	5	1	1	3
TRIM46 WILD-TYPE	16	57	50	64	52

'TRIM46 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.11

Table S6651. Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TRIM46 MUTATED	1	4	4	1
TRIM46 WILD-TYPE	97	40	46	56

Figure S2192. Get High-res Image Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TRIM46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00416 (Fisher's exact test), Q value = 0.04

Table S6652. Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TRIM46 MUTATED	7	1	0	3	0
TRIM46 WILD-TYPE	55	58	40	34	59

Figure S2193. Get High-res Image Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TRIM46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.073

Table S6653. Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TRIM46 MUTATED	1	1	9
TRIM46 WILD-TYPE	105	53	88

Figure S2194. Get High-res Image Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.068

Table S6654. Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TRIM46 MUTATED	10	2	0
TRIM46 WILD-TYPE	113	93	71

Figure S2195. Get High-res Image Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0289 (Fisher's exact test), Q value = 0.12

Table S6655. Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TRIM46 MUTATED	11	0	1
TRIM46 WILD-TYPE	146	63	68

Figure S2196. Get High-res Image Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.37

Table S6656. Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TRIM46 MUTATED	1	1	2	4	0	0
TRIM46 WILD-TYPE	32	18	57	35	16	45

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.4

Table S6657. Gene #677: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TRIM46 MUTATED	3	0	2	1	2	0
TRIM46 WILD-TYPE	44	39	33	31	21	35

'GIGYF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0787 (Fisher's exact test), Q value = 0.2

Table S6658. Gene #678: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GIGYF2 MUTATED	0	8	1	1	1
GIGYF2 WILD-TYPE	79	118	26	42	11

'GIGYF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.21

Table S6659. Gene #678: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GIGYF2 MUTATED	0	3	3	2
GIGYF2 WILD-TYPE	71	73	31	61

'GIGYF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.16

Table S6660. Gene #678: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GIGYF2 MUTATED	1	6	1	0	3
GIGYF2 WILD-TYPE	15	56	50	65	52

Figure S2197. Get High-res Image Gene #678: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GIGYF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.43

Table S6661. Gene #678: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GIGYF2 MUTATED	2	3	4	2
GIGYF2 WILD-TYPE	96	41	46	55

'GIGYF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00124 (Fisher's exact test), Q value = 0.02

Table S6662. Gene #678: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GIGYF2 MUTATED	8	1	0	1	0
GIGYF2 WILD-TYPE	54	58	40	36	59

Figure S2198. Get High-res Image Gene #678: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GIGYF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.32

Table S6663. Gene #678: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GIGYF2 MUTATED	4	0	6
GIGYF2 WILD-TYPE	102	54	91

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00506 (Fisher's exact test), Q value = 0.045

Table S6664. Gene #678: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GIGYF2 MUTATED	10	1	0
GIGYF2 WILD-TYPE	113	94	71

Figure S2199. Get High-res Image Gene #678: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 0.14

Table S6665. Gene #678: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GIGYF2 MUTATED	10	1	0
GIGYF2 WILD-TYPE	147	62	69

Figure S2200. Get High-res Image Gene #678: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.33

Table S6666. Gene #678: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GIGYF2 MUTATED	0	1	5	0	0	1
GIGYF2 WILD-TYPE	33	18	54	39	16	44

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.24

Table S6667. Gene #678: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GIGYF2 MUTATED	1	1	4	0	1	0
GIGYF2 WILD-TYPE	46	38	31	32	22	35

'P2RX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.66

Table S6668. Gene #679: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
P2RX1 MUTATED	0	3	0	0	0
P2RX1 WILD-TYPE	79	123	27	43	12

'P2RX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.29

Table S6669. Gene #679: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
P2RX1 MUTATED	0	3	0	0
P2RX1 WILD-TYPE	71	73	34	63

'P2RX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6670. Gene #679: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
P2RX1 MUTATED	1	1	1
P2RX1 WILD-TYPE	122	94	70

'P2RX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 0.85

Table S6671. Gene #679: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
P2RX1 MUTATED	2	1	0
P2RX1 WILD-TYPE	155	62	69

'P2RX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.7

Table S6672. Gene #679: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
P2RX1 MUTATED	0	1	1	1	0	0
P2RX1 WILD-TYPE	33	18	58	38	16	45

'P2RX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.71

Table S6673. Gene #679: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
P2RX1 MUTATED	2	0	1	0	0	0
P2RX1 WILD-TYPE	45	39	34	32	23	35

'CSNK1G3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.33

Table S6674. Gene #680: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CSNK1G3 MUTATED	0	6	1	0	0
CSNK1G3 WILD-TYPE	79	120	26	43	12

'CSNK1G3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.33

Table S6675. Gene #680: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CSNK1G3 MUTATED	0	4	1	1
CSNK1G3 WILD-TYPE	71	72	33	62

'CSNK1G3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S6676. Gene #680: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CSNK1G3 MUTATED	1	1	3	0	1
CSNK1G3 WILD-TYPE	15	61	48	65	54

'CSNK1G3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00131 (Fisher's exact test), Q value = 0.021

Table S6677. Gene #680: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CSNK1G3 MUTATED	1	5	0	0
CSNK1G3 WILD-TYPE	97	39	50	57

Figure S2201. Get High-res Image Gene #680: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CSNK1G3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 0.13

Table S6678. Gene #680: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CSNK1G3 MUTATED	4	0	0	1	0
CSNK1G3 WILD-TYPE	58	59	40	36	59

Figure S2202. Get High-res Image Gene #680: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CSNK1G3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.38

Table S6679. Gene #680: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CSNK1G3 MUTATED	1	0	4
CSNK1G3 WILD-TYPE	105	54	93

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.52

Table S6680. Gene #680: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CSNK1G3 MUTATED	5	1	1
CSNK1G3 WILD-TYPE	118	94	70

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S6681. Gene #680: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CSNK1G3 MUTATED	6	1	0
CSNK1G3 WILD-TYPE	151	62	69

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 0.87

Table S6682. Gene #680: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CSNK1G3 MUTATED	0	0	3	2	0	1
CSNK1G3 WILD-TYPE	33	19	56	37	16	44

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.56

Table S6683. Gene #680: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CSNK1G3 MUTATED	3	1	2	0	0	0
CSNK1G3 WILD-TYPE	44	38	33	32	23	35

'TIMP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S6684. Gene #681: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TIMP3 MUTATED	2	3	0	0	1
TIMP3 WILD-TYPE	77	123	27	43	11

'TIMP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.56

Table S6685. Gene #681: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TIMP3 MUTATED	1	3	1	0
TIMP3 WILD-TYPE	70	73	33	63

'TIMP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.45

Table S6686. Gene #681: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TIMP3 MUTATED	0	2	2	0	0
TIMP3 WILD-TYPE	16	60	49	65	55

'TIMP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.37

Table S6687. Gene #681: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TIMP3 MUTATED	2	2	0	0
TIMP3 WILD-TYPE	96	42	50	57

'TIMP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.78

Table S6688. Gene #681: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TIMP3 MUTATED	2	0	1	1	2
TIMP3 WILD-TYPE	60	59	39	36	57

'TIMP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.75

Table S6689. Gene #681: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TIMP3 MUTATED	3	0	3
TIMP3 WILD-TYPE	103	54	94

'TIMP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 0.76

Table S6690. Gene #681: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TIMP3 MUTATED	3	1	2
TIMP3 WILD-TYPE	120	94	69

'TIMP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.72

Table S6691. Gene #681: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TIMP3 MUTATED	4	0	2
TIMP3 WILD-TYPE	153	63	67

'TIMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.31

Table S6692. Gene #681: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TIMP3 MUTATED	2	0	0	1	0	0
TIMP3 WILD-TYPE	31	19	59	38	16	45

'TIMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.71

Table S6693. Gene #681: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TIMP3 MUTATED	2	0	0	0	0	1
TIMP3 WILD-TYPE	45	39	35	32	23	34

'C10ORF120 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6694. Gene #682: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C10ORF120 MUTATED	1	3	0	1	0
C10ORF120 WILD-TYPE	78	123	27	42	12

'C10ORF120 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 0.91

Table S6695. Gene #682: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C10ORF120 MUTATED	1	2	0	0
C10ORF120 WILD-TYPE	70	74	34	63

'C10ORF120 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.37

Table S6696. Gene #682: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C10ORF120 MUTATED	0	3	1	0	0
C10ORF120 WILD-TYPE	16	59	50	65	55

'C10ORF120 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0092 (Fisher's exact test), Q value = 0.063

Table S6697. Gene #682: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C10ORF120 MUTATED	0	3	1	0
C10ORF120 WILD-TYPE	98	41	49	57

Figure S2203. Get High-res Image Gene #682: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C10ORF120 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S6698. Gene #682: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C10ORF120 MUTATED	4	0	1
C10ORF120 WILD-TYPE	119	95	70

'C10ORF120 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S6699. Gene #682: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C10ORF120 MUTATED	4	0	1
C10ORF120 WILD-TYPE	153	63	68

'PIK3R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 0.84

Table S6700. Gene #683: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIK3R1 MUTATED	2	7	0	1	0
PIK3R1 WILD-TYPE	77	119	27	42	12

'PIK3R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.38

Table S6701. Gene #683: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIK3R1 MUTATED	1	5	0	1
PIK3R1 WILD-TYPE	70	71	34	62

'PIK3R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0422 (Fisher's exact test), Q value = 0.14

Table S6702. Gene #683: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PIK3R1 MUTATED	2	1	3	0	3
PIK3R1 WILD-TYPE	14	61	48	65	52

Figure S2204. Get High-res Image Gene #683: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PIK3R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.004 (Fisher's exact test), Q value = 0.04

Table S6703. Gene #683: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PIK3R1 MUTATED	2	6	0	1
PIK3R1 WILD-TYPE	96	38	50	56

Figure S2205. Get High-res Image Gene #683: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.13

Table S6704. Gene #683: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PIK3R1 MUTATED	3	0	0	4	2
PIK3R1 WILD-TYPE	59	59	40	33	57

Figure S2206. Get High-res Image Gene #683: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S6705. Gene #683: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PIK3R1 MUTATED	3	0	6
PIK3R1 WILD-TYPE	103	54	91

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00723 (Fisher's exact test), Q value = 0.055

Table S6706. Gene #683: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PIK3R1 MUTATED	9	0	1
PIK3R1 WILD-TYPE	114	95	70

Figure S2207. Get High-res Image Gene #683: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.36

Table S6707. Gene #683: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PIK3R1 MUTATED	8	0	2
PIK3R1 WILD-TYPE	149	63	67

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 0.17

Table S6708. Gene #683: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PIK3R1 MUTATED	0	2	3	0	1	0
PIK3R1 WILD-TYPE	33	17	56	39	15	45

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.52

Table S6709. Gene #683: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PIK3R1 MUTATED	3	0	2	0	0	1
PIK3R1 WILD-TYPE	44	39	33	32	23	34

'DGKD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.71

Table S6710. Gene #684: 'DGKD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DGKD MUTATED	1	4	1	0	0
DGKD WILD-TYPE	78	122	26	43	12

'DGKD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.56

Table S6711. Gene #684: 'DGKD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DGKD MUTATED	1	3	1	0
DGKD WILD-TYPE	70	73	33	63

'DGKD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.66

Table S6712. Gene #684: 'DGKD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DGKD MUTATED	0	2	2	0	1
DGKD WILD-TYPE	16	60	49	65	54

'DGKD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.56

Table S6713. Gene #684: 'DGKD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DGKD MUTATED	2	2	1	0
DGKD WILD-TYPE	96	42	49	57

'DGKD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.1

Table S6714. Gene #684: 'DGKD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DGKD MUTATED	4	0	0	0	0
DGKD WILD-TYPE	58	59	40	37	59

Figure S2208. Get High-res Image Gene #684: 'DGKD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DGKD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 0.57

Table S6715. Gene #684: 'DGKD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DGKD MUTATED	1	0	3
DGKD WILD-TYPE	105	54	94

'DGKD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.75

Table S6716. Gene #684: 'DGKD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DGKD MUTATED	3	1	2
DGKD WILD-TYPE	120	94	69

'DGKD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6717. Gene #684: 'DGKD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DGKD MUTATED	4	1	1
DGKD WILD-TYPE	153	62	68

'DGKD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.37

Table S6718. Gene #684: 'DGKD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DGKD MUTATED	1	0	0	3	0	1
DGKD WILD-TYPE	32	19	59	36	16	44

'DGKD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.65

Table S6719. Gene #684: 'DGKD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DGKD MUTATED	3	1	0	0	0	1
DGKD WILD-TYPE	44	38	35	32	23	34

'RDBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0483 (Fisher's exact test), Q value = 0.15

Table S6720. Gene #685: 'RDBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RDBP MUTATED	0	5	2	0	1
RDBP WILD-TYPE	79	121	25	43	11

Figure S2209. Get High-res Image Gene #685: 'RDBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RDBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00982 (Fisher's exact test), Q value = 0.066

Table S6721. Gene #685: 'RDBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RDBP MUTATED	0	4	3	0
RDBP WILD-TYPE	71	72	31	63

Figure S2210. Get High-res Image Gene #685: 'RDBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RDBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.32

Table S6722. Gene #685: 'RDBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RDBP MUTATED	0	2	1	0	4
RDBP WILD-TYPE	16	60	50	65	51

'RDBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.33

Table S6723. Gene #685: 'RDBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RDBP MUTATED	1	3	2	1
RDBP WILD-TYPE	97	41	48	56

'RDBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00268 (Fisher's exact test), Q value = 0.032

Table S6724. Gene #685: 'RDBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RDBP MUTATED	6	0	0	1	0
RDBP WILD-TYPE	56	59	40	36	59

Figure S2211. Get High-res Image Gene #685: 'RDBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RDBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.27

Table S6725. Gene #685: 'RDBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RDBP MUTATED	2	0	5
RDBP WILD-TYPE	104	54	92

'RDBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.75

Table S6726. Gene #685: 'RDBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RDBP MUTATED	5	2	1
RDBP WILD-TYPE	118	93	70

'RDBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S6727. Gene #685: 'RDBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RDBP MUTATED	7	1	0
RDBP WILD-TYPE	150	62	69

'RDBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.55

Table S6728. Gene #685: 'RDBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RDBP MUTATED	0	1	1	3	0	1
RDBP WILD-TYPE	33	18	58	36	16	44

'RDBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.14

Table S6729. Gene #685: 'RDBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RDBP MUTATED	2	1	0	0	3	0
RDBP WILD-TYPE	45	38	35	32	20	35

Figure S2212. Get High-res Image Gene #685: 'RDBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LUC7L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.75

Table S6730. Gene #686: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LUC7L3 MUTATED	1	3	0	2	0
LUC7L3 WILD-TYPE	78	123	27	41	12

'LUC7L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0616 (Fisher's exact test), Q value = 0.18

Table S6731. Gene #686: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LUC7L3 MUTATED	1	5	0	0
LUC7L3 WILD-TYPE	70	71	34	63

'LUC7L3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00638 (Fisher's exact test), Q value = 0.052

Table S6732. Gene #686: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LUC7L3 MUTATED	0	5	0	0	0
LUC7L3 WILD-TYPE	16	57	51	65	55

Figure S2213. Get High-res Image Gene #686: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LUC7L3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.081

Table S6733. Gene #686: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LUC7L3 MUTATED	0	2	3	0
LUC7L3 WILD-TYPE	98	42	47	57

Figure S2214. Get High-res Image Gene #686: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LUC7L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.35

Table S6734. Gene #686: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LUC7L3 MUTATED	3	0	0	2	1
LUC7L3 WILD-TYPE	59	59	40	35	58

'LUC7L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0341 (Fisher's exact test), Q value = 0.13

Table S6735. Gene #686: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LUC7L3 MUTATED	0	1	5
LUC7L3 WILD-TYPE	106	53	92

Figure S2215. Get High-res Image Gene #686: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LUC7L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.69

Table S6736. Gene #686: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LUC7L3 MUTATED	4	1	1
LUC7L3 WILD-TYPE	119	94	70

'LUC7L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.61

Table S6737. Gene #686: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LUC7L3 MUTATED	5	0	1
LUC7L3 WILD-TYPE	152	63	68

'LUC7L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.18

Table S6738. Gene #686: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LUC7L3 MUTATED	2	1	0	3	0	0
LUC7L3 WILD-TYPE	31	18	59	36	16	45

'LUC7L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0976 (Fisher's exact test), Q value = 0.23

Table S6739. Gene #686: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LUC7L3 MUTATED	4	0	0	1	1	0
LUC7L3 WILD-TYPE	43	39	35	31	22	35

'ROCK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.26

Table S6740. Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ROCK1 MUTATED	3	9	1	0	2
ROCK1 WILD-TYPE	76	117	26	43	10

'ROCK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00563 (Fisher's exact test), Q value = 0.048

Table S6741. Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ROCK1 MUTATED	0	8	1	1
ROCK1 WILD-TYPE	71	68	33	62

Figure S2216. Get High-res Image Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ROCK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0751 (Fisher's exact test), Q value = 0.2

Table S6742. Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ROCK1 MUTATED	1	5	2	0	5
ROCK1 WILD-TYPE	15	57	49	65	50

'ROCK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0467 (Fisher's exact test), Q value = 0.15

Table S6743. Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ROCK1 MUTATED	3	6	3	1
ROCK1 WILD-TYPE	95	38	47	56

Figure S2217. Get High-res Image Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ROCK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.081

Table S6744. Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ROCK1 MUTATED	9	1	1	2	1
ROCK1 WILD-TYPE	53	58	39	35	58

Figure S2218. Get High-res Image Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ROCK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00707 (Fisher's exact test), Q value = 0.055

Table S6745. Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ROCK1 MUTATED	2	1	11
ROCK1 WILD-TYPE	104	53	86

Figure S2219. Get High-res Image Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ROCK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.12

Table S6746. Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ROCK1 MUTATED	11	1	4
ROCK1 WILD-TYPE	112	94	67

Figure S2220. Get High-res Image Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ROCK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0304 (Fisher's exact test), Q value = 0.12

Table S6747. Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ROCK1 MUTATED	14	1	1
ROCK1 WILD-TYPE	143	62	68

Figure S2221. Get High-res Image Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ROCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 0.93

Table S6748. Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ROCK1 MUTATED	2	0	3	2	0	1
ROCK1 WILD-TYPE	31	19	56	37	16	44

'ROCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.53

Table S6749. Gene #687: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ROCK1 MUTATED	4	1	1	2	0	0
ROCK1 WILD-TYPE	43	38	34	30	23	35

'WWP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00453 (Fisher's exact test), Q value = 0.042

Table S6750. Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WWP2 MUTATED	0	12	0	0	0
WWP2 WILD-TYPE	79	114	27	43	12

Figure S2222. Get High-res Image Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WWP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.11

Table S6751. Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WWP2 MUTATED	0	2	3	5
WWP2 WILD-TYPE	71	74	31	58

Figure S2223. Get High-res Image Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WWP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00074 (Fisher's exact test), Q value = 0.015

Table S6752. Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WWP2 MUTATED	2	7	0	0	1
WWP2 WILD-TYPE	14	55	51	65	54

Figure S2224. Get High-res Image Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WWP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0914 (Fisher's exact test), Q value = 0.22

Table S6753. Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WWP2 MUTATED	3	3	4	0
WWP2 WILD-TYPE	95	41	46	57

'WWP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.0088

Table S6754. Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WWP2 MUTATED	9	0	1	1	0
WWP2 WILD-TYPE	53	59	39	36	59

Figure S2225. Get High-res Image Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WWP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.76

Table S6755. Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WWP2 MUTATED	5	1	5
WWP2 WILD-TYPE	101	53	92

'WWP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.092

Table S6756. Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WWP2 MUTATED	10	1	1
WWP2 WILD-TYPE	113	94	70

Figure S2226. Get High-res Image Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WWP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.32

Table S6757. Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WWP2 MUTATED	10	1	1
WWP2 WILD-TYPE	147	62	68

'WWP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.16

Table S6758. Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WWP2 MUTATED	0	1	4	5	0	0
WWP2 WILD-TYPE	33	18	55	34	16	45

'WWP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.41

Table S6759. Gene #688: 'WWP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WWP2 MUTATED	2	1	4	0	2	1
WWP2 WILD-TYPE	45	38	31	32	21	34

'STAT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.66

Table S6760. Gene #689: 'STAT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STAT6 MUTATED	0	3	0	0	0
STAT6 WILD-TYPE	79	123	27	43	12

'STAT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.53

Table S6761. Gene #689: 'STAT6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
STAT6 MUTATED	0	1	0	0	2
STAT6 WILD-TYPE	16	61	51	65	53

'STAT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0052 (Fisher's exact test), Q value = 0.046

Table S6762. Gene #689: 'STAT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
STAT6 MUTATED	0	3	0	0
STAT6 WILD-TYPE	98	41	50	57

Figure S2227. Get High-res Image Gene #689: 'STAT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STAT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S6763. Gene #689: 'STAT6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
STAT6 MUTATED	2	0	1
STAT6 WILD-TYPE	121	95	70

'STAT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.56

Table S6764. Gene #689: 'STAT6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
STAT6 MUTATED	3	0	0
STAT6 WILD-TYPE	154	63	69

'CELSR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S6765. Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CELSR1 MUTATED	0	27	2	5	1
CELSR1 WILD-TYPE	79	99	25	38	11

Figure S2228. Get High-res Image Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CELSR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00164 (Fisher's exact test), Q value = 0.024

Table S6766. Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CELSR1 MUTATED	3	18	4	4
CELSR1 WILD-TYPE	68	58	30	59

Figure S2229. Get High-res Image Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CELSR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.12

Table S6767. Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CELSR1 MUTATED	2	8	11	2	7
CELSR1 WILD-TYPE	14	54	40	63	48

Figure S2230. Get High-res Image Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CELSR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00128 (Fisher's exact test), Q value = 0.021

Table S6768. Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CELSR1 MUTATED	11	12	6	1
CELSR1 WILD-TYPE	87	32	44	56

Figure S2231. Get High-res Image Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CELSR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00565 (Fisher's exact test), Q value = 0.048

Table S6769. Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CELSR1 MUTATED	12	5	7	7	1
CELSR1 WILD-TYPE	50	54	33	30	58

Figure S2232. Get High-res Image Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CELSR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00093 (Fisher's exact test), Q value = 0.018

Table S6770. Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CELSR1 MUTATED	6	4	22
CELSR1 WILD-TYPE	100	50	75

Figure S2233. Get High-res Image Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029

Table S6771. Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CELSR1 MUTATED	27	6	2
CELSR1 WILD-TYPE	96	89	69

Figure S2234. Get High-res Image Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.083

Table S6772. Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CELSR1 MUTATED	27	3	5
CELSR1 WILD-TYPE	130	60	64

Figure S2235. Get High-res Image Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.77

Table S6773. Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CELSR1 MUTATED	3	3	9	6	1	3
CELSR1 WILD-TYPE	30	16	50	33	15	42

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.48

Table S6774. Gene #690: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CELSR1 MUTATED	7	2	7	4	3	2
CELSR1 WILD-TYPE	40	37	28	28	20	33

'MACF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.28

Table S6775. Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MACF1 MUTATED	7	27	3	5	2
MACF1 WILD-TYPE	72	99	24	38	10

'MACF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00163 (Fisher's exact test), Q value = 0.024

Table S6776. Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MACF1 MUTATED	6	22	5	5
MACF1 WILD-TYPE	65	54	29	58

Figure S2236. Get High-res Image Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MACF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00341 (Fisher's exact test), Q value = 0.036

Table S6777. Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MACF1 MUTATED	4	14	11	2	7
MACF1 WILD-TYPE	12	48	40	63	48

Figure S2237. Get High-res Image Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MACF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00903 (Fisher's exact test), Q value = 0.063

Table S6778. Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MACF1 MUTATED	13	14	7	4
MACF1 WILD-TYPE	85	30	43	53

Figure S2238. Get High-res Image Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MACF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.081

Table S6779. Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MACF1 MUTATED	18	4	5	7	7
MACF1 WILD-TYPE	44	55	35	30	52

Figure S2239. Get High-res Image Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MACF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0145 (Fisher's exact test), Q value = 0.081

Table S6780. Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MACF1 MUTATED	12	5	24
MACF1 WILD-TYPE	94	49	73

Figure S2240. Get High-res Image Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00226 (Fisher's exact test), Q value = 0.03

Table S6781. Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MACF1 MUTATED	30	8	7
MACF1 WILD-TYPE	93	87	64

Figure S2241. Get High-res Image Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00891 (Fisher's exact test), Q value = 0.062

Table S6782. Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MACF1 MUTATED	34	5	6
MACF1 WILD-TYPE	123	58	63

Figure S2242. Get High-res Image Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0524 (Fisher's exact test), Q value = 0.16

Table S6783. Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MACF1 MUTATED	7	6	10	7	0	3
MACF1 WILD-TYPE	26	13	49	32	16	42

'MACF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0277 (Fisher's exact test), Q value = 0.11

Table S6784. Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MACF1 MUTATED	14	3	6	2	5	3
MACF1 WILD-TYPE	33	36	29	30	18	32

Figure S2243. Get High-res Image Gene #691: 'MACF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DYRK1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.34

Table S6785. Gene #692: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DYRK1A MUTATED	0	7	0	1	0
DYRK1A WILD-TYPE	79	119	27	42	12

'DYRK1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.31

Table S6786. Gene #692: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DYRK1A MUTATED	0	4	2	2
DYRK1A WILD-TYPE	71	72	32	61

'DYRK1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.55

Table S6787. Gene #692: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DYRK1A MUTATED	0	3	0	1	3
DYRK1A WILD-TYPE	16	59	51	64	52

'DYRK1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.33

Table S6788. Gene #692: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DYRK1A MUTATED	1	3	2	1
DYRK1A WILD-TYPE	97	41	48	56

'DYRK1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.38

Table S6789. Gene #692: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DYRK1A MUTATED	5	1	1	0	1
DYRK1A WILD-TYPE	57	58	39	37	58

'DYRK1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.41

Table S6790. Gene #692: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DYRK1A MUTATED	3	0	5
DYRK1A WILD-TYPE	103	54	92

'DYRK1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.098

Table S6791. Gene #692: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DYRK1A MUTATED	8	1	0
DYRK1A WILD-TYPE	115	94	71

Figure S2244. Get High-res Image Gene #692: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DYRK1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S6792. Gene #692: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DYRK1A MUTATED	8	1	0
DYRK1A WILD-TYPE	149	62	69

'DYRK1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 0.93

Table S6793. Gene #692: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DYRK1A MUTATED	2	0	3	2	0	1
DYRK1A WILD-TYPE	31	19	56	37	16	44

'DYRK1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.69

Table S6794. Gene #692: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DYRK1A MUTATED	3	1	2	2	0	0
DYRK1A WILD-TYPE	44	38	33	30	23	35

'TXLNG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.32

Table S6795. Gene #693: 'TXLNG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TXLNG MUTATED	0	6	1	0	0
TXLNG WILD-TYPE	79	120	26	43	12

'TXLNG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 0.17

Table S6796. Gene #693: 'TXLNG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TXLNG MUTATED	0	4	1	0
TXLNG WILD-TYPE	71	72	33	63

'TXLNG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.42

Table S6797. Gene #693: 'TXLNG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TXLNG MUTATED	0	1	2	0	3
TXLNG WILD-TYPE	16	61	49	65	52

'TXLNG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00047 (Fisher's exact test), Q value = 0.011

Table S6798. Gene #693: 'TXLNG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TXLNG MUTATED	0	5	0	1
TXLNG WILD-TYPE	98	39	50	56

Figure S2245. Get High-res Image Gene #693: 'TXLNG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TXLNG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.41

Table S6799. Gene #693: 'TXLNG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TXLNG MUTATED	2	1	0	2	0
TXLNG WILD-TYPE	60	58	40	35	59

'TXLNG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0766 (Fisher's exact test), Q value = 0.2

Table S6800. Gene #693: 'TXLNG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TXLNG MUTATED	0	1	4
TXLNG WILD-TYPE	106	53	93

'TXLNG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0531 (Fisher's exact test), Q value = 0.16

Table S6801. Gene #693: 'TXLNG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TXLNG MUTATED	6	0	1
TXLNG WILD-TYPE	117	95	70

'TXLNG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.49

Table S6802. Gene #693: 'TXLNG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TXLNG MUTATED	6	0	1
TXLNG WILD-TYPE	151	63	68

'TXLNG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S6803. Gene #693: 'TXLNG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TXLNG MUTATED	1	2	1	1	0	0
TXLNG WILD-TYPE	32	17	58	38	16	45

'TXLNG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.74

Table S6804. Gene #693: 'TXLNG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TXLNG MUTATED	2	0	1	1	1	0
TXLNG WILD-TYPE	45	39	34	31	22	35

'OR10J3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S6805. Gene #694: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OR10J3 MUTATED	5	1	1	1	0
OR10J3 WILD-TYPE	74	125	26	42	12

'OR10J3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.49

Table S6806. Gene #694: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OR10J3 MUTATED	4	1	0	1
OR10J3 WILD-TYPE	67	75	34	62

'OR10J3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0057

Table S6807. Gene #694: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OR10J3 MUTATED	4	0	0	1	2
OR10J3 WILD-TYPE	12	62	51	64	53

Figure S2246. Get High-res Image Gene #694: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OR10J3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.52

Table S6808. Gene #694: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OR10J3 MUTATED	5	1	0	1
OR10J3 WILD-TYPE	93	43	50	56

'OR10J3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.46

Table S6809. Gene #694: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OR10J3 MUTATED	2	0	1	1	4
OR10J3 WILD-TYPE	60	59	39	36	55

'OR10J3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.52

Table S6810. Gene #694: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OR10J3 MUTATED	4	0	4
OR10J3 WILD-TYPE	102	54	93

'OR10J3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.34

Table S6811. Gene #694: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OR10J3 MUTATED	3	1	4
OR10J3 WILD-TYPE	120	94	67

'OR10J3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.49

Table S6812. Gene #694: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OR10J3 MUTATED	5	0	3
OR10J3 WILD-TYPE	152	63	66

'OR10J3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.53

Table S6813. Gene #694: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OR10J3 MUTATED	2	0	1	0	1	1
OR10J3 WILD-TYPE	31	19	58	39	15	44

'OR10J3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 0.81

Table S6814. Gene #694: 'OR10J3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OR10J3 MUTATED	1	0	1	1	0	2
OR10J3 WILD-TYPE	46	39	34	31	23	33

'CDX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.73

Table S6815. Gene #695: 'CDX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDX2 MUTATED	0	2	0	1	0
CDX2 WILD-TYPE	79	124	27	42	12

'CDX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 0.95

Table S6816. Gene #695: 'CDX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CDX2 MUTATED	0	1	1	1	0
CDX2 WILD-TYPE	16	61	50	64	55

'CDX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0865 (Fisher's exact test), Q value = 0.21

Table S6817. Gene #695: 'CDX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CDX2 MUTATED	0	2	0	1
CDX2 WILD-TYPE	98	42	50	56

'CDX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.72

Table S6818. Gene #695: 'CDX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CDX2 MUTATED	2	1	0	0	0
CDX2 WILD-TYPE	60	58	40	37	59

'CDX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 0.86

Table S6819. Gene #695: 'CDX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CDX2 MUTATED	2	0	1
CDX2 WILD-TYPE	104	54	96

'CDX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S6820. Gene #695: 'CDX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CDX2 MUTATED	3	0	0
CDX2 WILD-TYPE	120	95	71

'CDX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.56

Table S6821. Gene #695: 'CDX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CDX2 MUTATED	3	0	0
CDX2 WILD-TYPE	154	63	69

'ZMIZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00337 (Fisher's exact test), Q value = 0.036

Table S6822. Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZMIZ1 MUTATED	0	12	0	1	2
ZMIZ1 WILD-TYPE	79	114	27	42	10

Figure S2247. Get High-res Image Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZMIZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0021 (Fisher's exact test), Q value = 0.028

Table S6823. Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZMIZ1 MUTATED	0	9	1	1
ZMIZ1 WILD-TYPE	71	67	33	62

Figure S2248. Get High-res Image Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZMIZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.15

Table S6824. Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZMIZ1 MUTATED	0	3	4	0	6
ZMIZ1 WILD-TYPE	16	59	47	65	49

Figure S2249. Get High-res Image Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZMIZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.075

Table S6825. Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZMIZ1 MUTATED	4	7	1	1
ZMIZ1 WILD-TYPE	94	37	49	56

Figure S2250. Get High-res Image Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.12

Table S6826. Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZMIZ1 MUTATED	6	1	1	3	0
ZMIZ1 WILD-TYPE	56	58	39	34	59

Figure S2251. Get High-res Image Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.073

Table S6827. Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZMIZ1 MUTATED	1	1	9
ZMIZ1 WILD-TYPE	105	53	88

Figure S2252. Get High-res Image Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.075

Table S6828. Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZMIZ1 MUTATED	12	2	1
ZMIZ1 WILD-TYPE	111	93	70

Figure S2253. Get High-res Image Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.083

Table S6829. Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZMIZ1 MUTATED	13	2	0
ZMIZ1 WILD-TYPE	144	61	69

Figure S2254. Get High-res Image Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.79

Table S6830. Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZMIZ1 MUTATED	1	2	3	2	0	1
ZMIZ1 WILD-TYPE	32	17	56	37	16	44

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.78

Table S6831. Gene #696: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZMIZ1 MUTATED	3	1	2	2	1	0
ZMIZ1 WILD-TYPE	44	38	33	30	22	35

'MMP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.38

Table S6832. Gene #697: 'MMP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MMP10 MUTATED	1	6	0	0	1
MMP10 WILD-TYPE	78	120	27	43	11

'MMP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S6833. Gene #697: 'MMP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MMP10 MUTATED	1	6	0	1
MMP10 WILD-TYPE	70	70	34	62

'MMP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.17

Table S6834. Gene #697: 'MMP10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MMP10 MUTATED	1	4	0	0	2
MMP10 WILD-TYPE	15	58	51	65	53

'MMP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0366 (Fisher's exact test), Q value = 0.13

Table S6835. Gene #697: 'MMP10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MMP10 MUTATED	1	2	4	0
MMP10 WILD-TYPE	97	42	46	57

Figure S2255. Get High-res Image Gene #697: 'MMP10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MMP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.13

Table S6836. Gene #697: 'MMP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MMP10 MUTATED	4	0	0	1	0
MMP10 WILD-TYPE	58	59	40	36	59

Figure S2256. Get High-res Image Gene #697: 'MMP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MMP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.73

Table S6837. Gene #697: 'MMP10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MMP10 MUTATED	1	1	3
MMP10 WILD-TYPE	105	53	94

'MMP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 0.94

Table S6838. Gene #697: 'MMP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MMP10 MUTATED	4	2	2
MMP10 WILD-TYPE	119	93	69

'MMP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.36

Table S6839. Gene #697: 'MMP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MMP10 MUTATED	7	0	1
MMP10 WILD-TYPE	150	63	68

'MMP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.66

Table S6840. Gene #697: 'MMP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MMP10 MUTATED	2	0	2	2	0	0
MMP10 WILD-TYPE	31	19	57	37	16	45

'MMP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.37

Table S6841. Gene #697: 'MMP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MMP10 MUTATED	1	0	2	1	2	0
MMP10 WILD-TYPE	46	39	33	31	21	35

'BCL2L14 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6842. Gene #698: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BCL2L14 MUTATED	1	2	0	0	0
BCL2L14 WILD-TYPE	78	124	27	43	12

'BCL2L14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.73

Table S6843. Gene #698: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BCL2L14 MUTATED	0	2	0	1	0
BCL2L14 WILD-TYPE	16	60	51	64	55

'BCL2L14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.45

Table S6844. Gene #698: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BCL2L14 MUTATED	0	1	1	1
BCL2L14 WILD-TYPE	98	43	49	56

'BCL2L14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.24

Table S6845. Gene #698: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BCL2L14 MUTATED	1	0	0	2	0
BCL2L14 WILD-TYPE	61	59	40	35	59

'BCL2L14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.47

Table S6846. Gene #698: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BCL2L14 MUTATED	0	1	2
BCL2L14 WILD-TYPE	106	53	95

'BCL2L14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.85

Table S6847. Gene #698: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BCL2L14 MUTATED	2	1	0
BCL2L14 WILD-TYPE	121	94	71

'BCL2L14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S6848. Gene #698: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BCL2L14 MUTATED	2	1	0
BCL2L14 WILD-TYPE	155	62	69

'HDAC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00061 (Fisher's exact test), Q value = 0.013

Table S6849. Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HDAC4 MUTATED	0	17	2	1	2
HDAC4 WILD-TYPE	79	109	25	42	10

Figure S2257. Get High-res Image Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HDAC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0019

Table S6850. Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HDAC4 MUTATED	1	16	2	1
HDAC4 WILD-TYPE	70	60	32	62

Figure S2258. Get High-res Image Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HDAC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00919 (Fisher's exact test), Q value = 0.063

Table S6851. Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HDAC4 MUTATED	0	8	6	0	6
HDAC4 WILD-TYPE	16	54	45	65	49

Figure S2259. Get High-res Image Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HDAC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S6852. Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HDAC4 MUTATED	3	13	4	0
HDAC4 WILD-TYPE	95	31	46	57

Figure S2260. Get High-res Image Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HDAC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S6853. Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HDAC4 MUTATED	10	0	3	5	0
HDAC4 WILD-TYPE	52	59	37	32	59

Figure S2261. Get High-res Image Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HDAC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S6854. Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HDAC4 MUTATED	1	0	17
HDAC4 WILD-TYPE	105	54	80

Figure S2262. Get High-res Image Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00061 (Fisher's exact test), Q value = 0.013

Table S6855. Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HDAC4 MUTATED	18	2	2
HDAC4 WILD-TYPE	105	93	69

Figure S2263. Get High-res Image Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0037

Table S6856. Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HDAC4 MUTATED	21	1	0
HDAC4 WILD-TYPE	136	62	69

Figure S2264. Get High-res Image Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.4

Table S6857. Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HDAC4 MUTATED	3	2	5	6	0	1
HDAC4 WILD-TYPE	30	17	54	33	16	44

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00822 (Fisher's exact test), Q value = 0.06

Table S6858. Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HDAC4 MUTATED	10	1	2	2	2	0
HDAC4 WILD-TYPE	37	38	33	30	21	35

Figure S2265. Get High-res Image Gene #699: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CNTROB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.4

Table S6859. Gene #700: 'CNTROB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CNTROB MUTATED	0	6	0	1	0
CNTROB WILD-TYPE	79	120	27	42	12

'CNTROB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.098

Table S6860. Gene #700: 'CNTROB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CNTROB MUTATED	0	5	1	0
CNTROB WILD-TYPE	71	71	33	63

Figure S2266. Get High-res Image Gene #700: 'CNTROB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CNTROB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.21

Table S6861. Gene #700: 'CNTROB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CNTROB MUTATED	0	4	2	0	0
CNTROB WILD-TYPE	16	58	49	65	55

'CNTROB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.1

Table S6862. Gene #700: 'CNTROB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CNTROB MUTATED	1	4	1	0
CNTROB WILD-TYPE	97	40	49	57

Figure S2267. Get High-res Image Gene #700: 'CNTROB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CNTROB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00949 (Fisher's exact test), Q value = 0.064

Table S6863. Gene #700: 'CNTROB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CNTROB MUTATED	4	0	0	3	0
CNTROB WILD-TYPE	58	59	40	34	59

Figure S2268. Get High-res Image Gene #700: 'CNTROB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CNTROB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S6864. Gene #700: 'CNTROB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CNTROB MUTATED	2	0	5
CNTROB WILD-TYPE	104	54	92

'CNTROB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00732 (Fisher's exact test), Q value = 0.056

Table S6865. Gene #700: 'CNTROB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CNTROB MUTATED	7	0	0
CNTROB WILD-TYPE	116	95	71

Figure S2269. Get High-res Image Gene #700: 'CNTROB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CNTROB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0694 (Fisher's exact test), Q value = 0.19

Table S6866. Gene #700: 'CNTROB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CNTROB MUTATED	7	0	0
CNTROB WILD-TYPE	150	63	69

'CNTROB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.66

Table S6867. Gene #700: 'CNTROB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CNTROB MUTATED	1	1	2	1	1	0
CNTROB WILD-TYPE	32	18	57	38	15	45

'CNTROB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.48

Table S6868. Gene #700: 'CNTROB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CNTROB MUTATED	3	0	2	1	0	0
CNTROB WILD-TYPE	44	39	33	31	23	35

'SP100 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.4

Table S6869. Gene #701: 'SP100 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SP100 MUTATED	1	7	2	3	1
SP100 WILD-TYPE	78	119	25	40	11

'SP100 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.38

Table S6870. Gene #701: 'SP100 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SP100 MUTATED	2	7	3	2
SP100 WILD-TYPE	69	69	31	61

'SP100 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.59

Table S6871. Gene #701: 'SP100 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SP100 MUTATED	1	5	3	1	3
SP100 WILD-TYPE	15	57	48	64	52

'SP100 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.098

Table S6872. Gene #701: 'SP100 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SP100 MUTATED	2	5	5	1
SP100 WILD-TYPE	96	39	45	56

Figure S2270. Get High-res Image Gene #701: 'SP100 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SP100 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.64

Table S6873. Gene #701: 'SP100 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SP100 MUTATED	5	3	2	3	1
SP100 WILD-TYPE	57	56	38	34	58

'SP100 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.59

Table S6874. Gene #701: 'SP100 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SP100 MUTATED	6	1	7
SP100 WILD-TYPE	100	53	90

'SP100 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.18

Table S6875. Gene #701: 'SP100 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SP100 MUTATED	11	3	1
SP100 WILD-TYPE	112	92	70

'SP100 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.54

Table S6876. Gene #701: 'SP100 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SP100 MUTATED	11	2	2
SP100 WILD-TYPE	146	61	67

'SP100 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.48

Table S6877. Gene #701: 'SP100 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SP100 MUTATED	1	3	5	1	0	2
SP100 WILD-TYPE	32	16	54	38	16	43

'SP100 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.25

Table S6878. Gene #701: 'SP100 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SP100 MUTATED	3	0	5	1	2	1
SP100 WILD-TYPE	44	39	30	31	21	34

'ZNF334 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.4

Table S6879. Gene #702: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF334 MUTATED	1	9	0	2	0
ZNF334 WILD-TYPE	78	117	27	41	12

'ZNF334 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.39

Table S6880. Gene #702: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF334 MUTATED	1	5	2	1
ZNF334 WILD-TYPE	70	71	32	62

'ZNF334 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S6881. Gene #702: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZNF334 MUTATED	0	6	2	1	2
ZNF334 WILD-TYPE	16	56	49	64	53

'ZNF334 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0055

Table S6882. Gene #702: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZNF334 MUTATED	0	7	3	1
ZNF334 WILD-TYPE	98	37	47	56

Figure S2271. Get High-res Image Gene #702: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.13

Table S6883. Gene #702: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZNF334 MUTATED	7	1	0	2	1
ZNF334 WILD-TYPE	55	58	40	35	58

Figure S2272. Get High-res Image Gene #702: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0115 (Fisher's exact test), Q value = 0.071

Table S6884. Gene #702: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZNF334 MUTATED	2	0	9
ZNF334 WILD-TYPE	104	54	88

Figure S2273. Get High-res Image Gene #702: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00607 (Fisher's exact test), Q value = 0.05

Table S6885. Gene #702: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZNF334 MUTATED	10	0	2
ZNF334 WILD-TYPE	113	95	69

Figure S2274. Get High-res Image Gene #702: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S6886. Gene #702: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZNF334 MUTATED	10	1	1
ZNF334 WILD-TYPE	147	62	68

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.45

Table S6887. Gene #702: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZNF334 MUTATED	3	0	3	1	0	0
ZNF334 WILD-TYPE	30	19	56	38	16	45

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S6888. Gene #702: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZNF334 MUTATED	3	0	3	1	0	0
ZNF334 WILD-TYPE	44	39	32	31	23	35

'GABRD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S6889. Gene #703: 'GABRD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GABRD MUTATED	0	6	0	0	0
GABRD WILD-TYPE	79	120	27	43	12

'GABRD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.55

Table S6890. Gene #703: 'GABRD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GABRD MUTATED	1	4	0	1
GABRD WILD-TYPE	70	72	34	62

'GABRD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 0.83

Table S6891. Gene #703: 'GABRD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GABRD MUTATED	0	1	1	0	1
GABRD WILD-TYPE	16	61	50	65	54

'GABRD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 0.7

Table S6892. Gene #703: 'GABRD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GABRD MUTATED	1	1	1	0
GABRD WILD-TYPE	97	43	49	57

'GABRD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.29

Table S6893. Gene #703: 'GABRD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GABRD MUTATED	2	0	1	2	0
GABRD WILD-TYPE	60	59	39	35	59

'GABRD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0747 (Fisher's exact test), Q value = 0.2

Table S6894. Gene #703: 'GABRD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GABRD MUTATED	0	1	4
GABRD WILD-TYPE	106	53	93

'GABRD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.29

Table S6895. Gene #703: 'GABRD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GABRD MUTATED	5	1	0
GABRD WILD-TYPE	118	94	71

'GABRD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S6896. Gene #703: 'GABRD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GABRD MUTATED	6	0	0
GABRD WILD-TYPE	151	63	69

'GABRD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00293 (Fisher's exact test), Q value = 0.033

Table S6897. Gene #703: 'GABRD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GABRD MUTATED	0	3	0	2	0	0
GABRD WILD-TYPE	33	16	59	37	16	45

Figure S2275. Get High-res Image Gene #703: 'GABRD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GABRD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.14

Table S6898. Gene #703: 'GABRD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GABRD MUTATED	4	0	0	0	1	0
GABRD WILD-TYPE	43	39	35	32	22	35

Figure S2276. Get High-res Image Gene #703: 'GABRD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LENG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.39

Table S6899. Gene #704: 'LENG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LENG1 MUTATED	0	6	1	1	0
LENG1 WILD-TYPE	79	120	26	42	12

'LENG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.08

Table S6900. Gene #704: 'LENG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LENG1 MUTATED	0	5	2	0
LENG1 WILD-TYPE	71	71	32	63

Figure S2277. Get High-res Image Gene #704: 'LENG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LENG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S6901. Gene #704: 'LENG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LENG1 MUTATED	0	4	3	1	0
LENG1 WILD-TYPE	16	58	48	64	55

'LENG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00574 (Fisher's exact test), Q value = 0.049

Table S6902. Gene #704: 'LENG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LENG1 MUTATED	0	4	3	1
LENG1 WILD-TYPE	98	40	47	56

Figure S2278. Get High-res Image Gene #704: 'LENG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LENG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.086

Table S6903. Gene #704: 'LENG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LENG1 MUTATED	2	1	0	4	0
LENG1 WILD-TYPE	60	58	40	33	59

Figure S2279. Get High-res Image Gene #704: 'LENG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LENG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.082

Table S6904. Gene #704: 'LENG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LENG1 MUTATED	0	1	6
LENG1 WILD-TYPE	106	53	91

Figure S2280. Get High-res Image Gene #704: 'LENG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LENG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.43

Table S6905. Gene #704: 'LENG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LENG1 MUTATED	5	3	0
LENG1 WILD-TYPE	118	92	71

'LENG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.45

Table S6906. Gene #704: 'LENG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LENG1 MUTATED	6	2	0
LENG1 WILD-TYPE	151	61	69

'LENG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S6907. Gene #704: 'LENG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LENG1 MUTATED	1	1	2	1	0	1
LENG1 WILD-TYPE	32	18	57	38	16	44

'LENG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.68

Table S6908. Gene #704: 'LENG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LENG1 MUTATED	3	1	1	0	1	0
LENG1 WILD-TYPE	44	38	34	32	22	35

'TBC1D23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.24

Table S6909. Gene #705: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TBC1D23 MUTATED	0	2	1	0	1
TBC1D23 WILD-TYPE	79	124	26	43	11

'TBC1D23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.77

Table S6910. Gene #705: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TBC1D23 MUTATED	1	1	1	0
TBC1D23 WILD-TYPE	70	75	33	63

'TBC1D23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.45

Table S6911. Gene #705: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TBC1D23 MUTATED	0	2	2	0	0
TBC1D23 WILD-TYPE	16	60	49	65	55

'TBC1D23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0498 (Fisher's exact test), Q value = 0.16

Table S6912. Gene #705: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TBC1D23 MUTATED	1	3	0	0
TBC1D23 WILD-TYPE	97	41	50	57

Figure S2281. Get High-res Image Gene #705: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TBC1D23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.54

Table S6913. Gene #705: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TBC1D23 MUTATED	1	0	1	1	0
TBC1D23 WILD-TYPE	61	59	39	36	59

'TBC1D23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S6914. Gene #705: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TBC1D23 MUTATED	0	0	3
TBC1D23 WILD-TYPE	106	54	94

'TBC1D23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.59

Table S6915. Gene #705: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TBC1D23 MUTATED	3	1	0
TBC1D23 WILD-TYPE	120	94	71

'TBC1D23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 0.75

Table S6916. Gene #705: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TBC1D23 MUTATED	3	1	0
TBC1D23 WILD-TYPE	154	62	69

'TBC1D23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.43

Table S6917. Gene #705: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TBC1D23 MUTATED	1	1	0	0	0	1
TBC1D23 WILD-TYPE	32	18	59	39	16	44

'TBC1D23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 0.77

Table S6918. Gene #705: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TBC1D23 MUTATED	2	1	0	0	0	0
TBC1D23 WILD-TYPE	45	38	35	32	23	35

'EPHA10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0218 (Fisher's exact test), Q value = 0.1

Table S6919. Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EPHA10 MUTATED	1	12	0	0	0
EPHA10 WILD-TYPE	78	114	27	43	12

Figure S2282. Get High-res Image Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPHA10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.082

Table S6920. Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EPHA10 MUTATED	1	7	2	0
EPHA10 WILD-TYPE	70	69	32	63

Figure S2283. Get High-res Image Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPHA10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00926 (Fisher's exact test), Q value = 0.064

Table S6921. Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EPHA10 MUTATED	1	6	0	0	4
EPHA10 WILD-TYPE	15	56	51	65	51

Figure S2284. Get High-res Image Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EPHA10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.068

Table S6922. Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EPHA10 MUTATED	2	4	5	0
EPHA10 WILD-TYPE	96	40	45	57

Figure S2285. Get High-res Image Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPHA10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S6923. Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EPHA10 MUTATED	6	1	2	2	1
EPHA10 WILD-TYPE	56	58	38	35	58

'EPHA10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0185 (Fisher's exact test), Q value = 0.092

Table S6924. Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EPHA10 MUTATED	3	0	9
EPHA10 WILD-TYPE	103	54	88

Figure S2286. Get High-res Image Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPHA10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.13

Table S6925. Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EPHA10 MUTATED	10	1	2
EPHA10 WILD-TYPE	113	94	69

Figure S2287. Get High-res Image Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPHA10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00189 (Fisher's exact test), Q value = 0.027

Table S6926. Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EPHA10 MUTATED	13	0	0
EPHA10 WILD-TYPE	144	63	69

Figure S2288. Get High-res Image Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPHA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.4

Table S6927. Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EPHA10 MUTATED	1	1	4	4	0	0
EPHA10 WILD-TYPE	32	18	55	35	16	45

'EPHA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S6928. Gene #706: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EPHA10 MUTATED	4	0	3	1	2	0
EPHA10 WILD-TYPE	43	39	32	31	21	35

'EHBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.29

Table S6929. Gene #707: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EHBP1 MUTATED	0	6	2	1	0
EHBP1 WILD-TYPE	79	120	25	42	12

'EHBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6930. Gene #707: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EHBP1 MUTATED	2	2	1	2
EHBP1 WILD-TYPE	69	74	33	61

'EHBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.57

Table S6931. Gene #707: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EHBP1 MUTATED	1	3	0	2	1
EHBP1 WILD-TYPE	15	59	51	63	54

'EHBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S6932. Gene #707: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EHBP1 MUTATED	1	1	4	1
EHBP1 WILD-TYPE	97	43	46	56

'EHBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0804 (Fisher's exact test), Q value = 0.21

Table S6933. Gene #707: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EHBP1 MUTATED	6	1	0	1	1
EHBP1 WILD-TYPE	56	58	40	36	58

'EHBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6934. Gene #707: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EHBP1 MUTATED	4	2	3
EHBP1 WILD-TYPE	102	52	94

'EHBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.33

Table S6935. Gene #707: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EHBP1 MUTATED	6	3	0
EHBP1 WILD-TYPE	117	92	71

'EHBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.65

Table S6936. Gene #707: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EHBP1 MUTATED	5	3	1
EHBP1 WILD-TYPE	152	60	68

'EHBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.79

Table S6937. Gene #707: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EHBP1 MUTATED	0	0	2	2	0	3
EHBP1 WILD-TYPE	33	19	57	37	16	42

'EHBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.14

Table S6938. Gene #707: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EHBP1 MUTATED	0	1	2	1	3	0
EHBP1 WILD-TYPE	47	38	33	31	20	35

Figure S2289. Get High-res Image Gene #707: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NUAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.62

Table S6939. Gene #708: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NUAK1 MUTATED	2	10	2	2	0
NUAK1 WILD-TYPE	77	116	25	41	12

'NUAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.11

Table S6940. Gene #708: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NUAK1 MUTATED	1	8	3	1
NUAK1 WILD-TYPE	70	68	31	62

Figure S2290. Get High-res Image Gene #708: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NUAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.095

Table S6941. Gene #708: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NUAK1 MUTATED	1	6	0	1	6
NUAK1 WILD-TYPE	15	56	51	64	49

Figure S2291. Get High-res Image Gene #708: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NUAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00273 (Fisher's exact test), Q value = 0.032

Table S6942. Gene #708: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NUAK1 MUTATED	1	7	4	2
NUAK1 WILD-TYPE	97	37	46	55

Figure S2292. Get High-res Image Gene #708: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NUAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S6943. Gene #708: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NUAK1 MUTATED	8	2	2	2	1
NUAK1 WILD-TYPE	54	57	38	35	58

'NUAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.31

Table S6944. Gene #708: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NUAK1 MUTATED	5	1	9
NUAK1 WILD-TYPE	101	53	88

'NUAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.43

Table S6945. Gene #708: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NUAK1 MUTATED	10	3	3
NUAK1 WILD-TYPE	113	92	68

'NUAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.31

Table S6946. Gene #708: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NUAK1 MUTATED	12	3	1
NUAK1 WILD-TYPE	145	60	68

'NUAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S6947. Gene #708: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NUAK1 MUTATED	2	1	3	3	0	2
NUAK1 WILD-TYPE	31	18	56	36	16	43

'NUAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.47

Table S6948. Gene #708: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NUAK1 MUTATED	4	0	3	1	2	1
NUAK1 WILD-TYPE	43	39	32	31	21	34

'IGHMBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 0.23

Table S6949. Gene #709: 'IGHMBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IGHMBP2 MUTATED	0	9	1	2	0
IGHMBP2 WILD-TYPE	79	117	26	41	12

'IGHMBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 0.14

Table S6950. Gene #709: 'IGHMBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IGHMBP2 MUTATED	0	7	1	3
IGHMBP2 WILD-TYPE	71	69	33	60

Figure S2293. Get High-res Image Gene #709: 'IGHMBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IGHMBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.42

Table S6951. Gene #709: 'IGHMBP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
IGHMBP2 MUTATED	1	1	4	1	3
IGHMBP2 WILD-TYPE	15	61	47	64	52

'IGHMBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00568 (Fisher's exact test), Q value = 0.048

Table S6952. Gene #709: 'IGHMBP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
IGHMBP2 MUTATED	1	6	2	1
IGHMBP2 WILD-TYPE	97	38	48	56

Figure S2294. Get High-res Image Gene #709: 'IGHMBP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IGHMBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.24

Table S6953. Gene #709: 'IGHMBP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
IGHMBP2 MUTATED	5	1	0	3	1
IGHMBP2 WILD-TYPE	57	58	40	34	58

'IGHMBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S6954. Gene #709: 'IGHMBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
IGHMBP2 MUTATED	2	1	7
IGHMBP2 WILD-TYPE	104	53	90

'IGHMBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.068

Table S6955. Gene #709: 'IGHMBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
IGHMBP2 MUTATED	10	2	0
IGHMBP2 WILD-TYPE	113	93	71

Figure S2295. Get High-res Image Gene #709: 'IGHMBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IGHMBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0601 (Fisher's exact test), Q value = 0.18

Table S6956. Gene #709: 'IGHMBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
IGHMBP2 MUTATED	10	2	0
IGHMBP2 WILD-TYPE	147	61	69

'IGHMBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.43

Table S6957. Gene #709: 'IGHMBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
IGHMBP2 MUTATED	1	2	5	0	0	2
IGHMBP2 WILD-TYPE	32	17	54	39	16	43

'IGHMBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.61

Table S6958. Gene #709: 'IGHMBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
IGHMBP2 MUTATED	3	2	3	2	0	0
IGHMBP2 WILD-TYPE	44	37	32	30	23	35

'PIK3C2G MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.27

Table S6959. Gene #710: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIK3C2G MUTATED	0	7	2	1	0
PIK3C2G WILD-TYPE	79	119	25	42	12

'PIK3C2G MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.18

Table S6960. Gene #710: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIK3C2G MUTATED	0	5	2	1
PIK3C2G WILD-TYPE	71	71	32	62

'PIK3C2G MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 0.9

Table S6961. Gene #710: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PIK3C2G MUTATED	1	3	1	2	2
PIK3C2G WILD-TYPE	15	59	50	63	53

'PIK3C2G MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.64

Table S6962. Gene #710: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PIK3C2G MUTATED	2	3	2	2
PIK3C2G WILD-TYPE	96	41	48	55

'PIK3C2G MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.25

Table S6963. Gene #710: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PIK3C2G MUTATED	5	1	1	2	0
PIK3C2G WILD-TYPE	57	58	39	35	59

'PIK3C2G MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 0.95

Table S6964. Gene #710: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PIK3C2G MUTATED	3	2	4
PIK3C2G WILD-TYPE	103	52	93

'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 0.15

Table S6965. Gene #710: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PIK3C2G MUTATED	8	2	0
PIK3C2G WILD-TYPE	115	93	71

Figure S2296. Get High-res Image Gene #710: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0574 (Fisher's exact test), Q value = 0.17

Table S6966. Gene #710: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PIK3C2G MUTATED	9	1	0
PIK3C2G WILD-TYPE	148	62	69

'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.58

Table S6967. Gene #710: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PIK3C2G MUTATED	1	1	3	3	0	0
PIK3C2G WILD-TYPE	32	18	56	36	16	45

'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.24

Table S6968. Gene #710: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PIK3C2G MUTATED	1	0	3	2	2	0
PIK3C2G WILD-TYPE	46	39	32	30	21	35

'SLC2A12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.61

Table S6969. Gene #711: 'SLC2A12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC2A12 MUTATED	1	6	0	0	0
SLC2A12 WILD-TYPE	78	120	27	43	12

'SLC2A12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 0.16

Table S6970. Gene #711: 'SLC2A12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC2A12 MUTATED	0	5	0	1
SLC2A12 WILD-TYPE	71	71	34	62

'SLC2A12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.66

Table S6971. Gene #711: 'SLC2A12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC2A12 MUTATED	0	2	2	0	1
SLC2A12 WILD-TYPE	16	60	49	65	54

'SLC2A12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.56

Table S6972. Gene #711: 'SLC2A12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC2A12 MUTATED	2	2	1	0
SLC2A12 WILD-TYPE	96	42	49	57

'SLC2A12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 0.19

Table S6973. Gene #711: 'SLC2A12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC2A12 MUTATED	2	0	0	2	0
SLC2A12 WILD-TYPE	60	59	40	35	59

'SLC2A12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0496 (Fisher's exact test), Q value = 0.16

Table S6974. Gene #711: 'SLC2A12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC2A12 MUTATED	0	0	4
SLC2A12 WILD-TYPE	106	54	93

Figure S2297. Get High-res Image Gene #711: 'SLC2A12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC2A12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00753 (Fisher's exact test), Q value = 0.056

Table S6975. Gene #711: 'SLC2A12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC2A12 MUTATED	7	0	0
SLC2A12 WILD-TYPE	116	95	71

Figure S2298. Get High-res Image Gene #711: 'SLC2A12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC2A12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0692 (Fisher's exact test), Q value = 0.19

Table S6976. Gene #711: 'SLC2A12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC2A12 MUTATED	7	0	0
SLC2A12 WILD-TYPE	150	63	69

'SLC2A12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.79

Table S6977. Gene #711: 'SLC2A12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC2A12 MUTATED	1	0	2	2	0	0
SLC2A12 WILD-TYPE	32	19	57	37	16	45

'SLC2A12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.57

Table S6978. Gene #711: 'SLC2A12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC2A12 MUTATED	2	0	1	2	0	0
SLC2A12 WILD-TYPE	45	39	34	30	23	35

'ARID3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.34

Table S6979. Gene #712: 'ARID3A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARID3A MUTATED	0	4	0	1	1
ARID3A WILD-TYPE	79	122	27	42	11

'ARID3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 0.16

Table S6980. Gene #712: 'ARID3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARID3A MUTATED	0	5	0	1
ARID3A WILD-TYPE	71	71	34	62

'ARID3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.58

Table S6981. Gene #712: 'ARID3A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ARID3A MUTATED	1	1	1	1	0
ARID3A WILD-TYPE	15	61	50	64	55

'ARID3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.47

Table S6982. Gene #712: 'ARID3A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ARID3A MUTATED	1	2	0	1
ARID3A WILD-TYPE	97	42	50	56

'ARID3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.18

Table S6983. Gene #712: 'ARID3A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ARID3A MUTATED	4	0	1	1	0
ARID3A WILD-TYPE	58	59	39	36	59

'ARID3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.41

Table S6984. Gene #712: 'ARID3A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ARID3A MUTATED	2	0	4
ARID3A WILD-TYPE	104	54	93

'ARID3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.084

Table S6985. Gene #712: 'ARID3A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ARID3A MUTATED	6	0	0
ARID3A WILD-TYPE	117	95	71

Figure S2299. Get High-res Image Gene #712: 'ARID3A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARID3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S6986. Gene #712: 'ARID3A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ARID3A MUTATED	6	0	0
ARID3A WILD-TYPE	151	63	69

'ARID3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.79

Table S6987. Gene #712: 'ARID3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ARID3A MUTATED	1	1	2	1	0	0
ARID3A WILD-TYPE	32	18	57	38	16	45

'ARID3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.61

Table S6988. Gene #712: 'ARID3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ARID3A MUTATED	2	0	2	1	0	0
ARID3A WILD-TYPE	45	39	33	31	23	35

'WSB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S6989. Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WSB2 MUTATED	0	8	0	1	0
WSB2 WILD-TYPE	79	118	27	42	12

'WSB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0631 (Fisher's exact test), Q value = 0.18

Table S6990. Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WSB2 MUTATED	0	5	2	1
WSB2 WILD-TYPE	71	71	32	62

'WSB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00931 (Fisher's exact test), Q value = 0.064

Table S6991. Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WSB2 MUTATED	0	6	3	0	0
WSB2 WILD-TYPE	16	56	48	65	55

Figure S2300. Get High-res Image Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WSB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0053

Table S6992. Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WSB2 MUTATED	0	6	3	0
WSB2 WILD-TYPE	98	38	47	57

Figure S2301. Get High-res Image Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WSB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.1

Table S6993. Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WSB2 MUTATED	5	0	1	2	0
WSB2 WILD-TYPE	57	59	39	35	59

Figure S2302. Get High-res Image Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WSB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0756 (Fisher's exact test), Q value = 0.2

Table S6994. Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WSB2 MUTATED	2	0	6
WSB2 WILD-TYPE	104	54	91

'WSB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00124 (Fisher's exact test), Q value = 0.02

Table S6995. Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WSB2 MUTATED	9	0	0
WSB2 WILD-TYPE	114	95	71

Figure S2303. Get High-res Image Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WSB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S6996. Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WSB2 MUTATED	8	1	0
WSB2 WILD-TYPE	149	62	69

'WSB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.11

Table S6997. Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WSB2 MUTATED	0	2	5	0	0	0
WSB2 WILD-TYPE	33	17	54	39	16	45

Figure S2304. Get High-res Image Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'WSB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 0.14

Table S6998. Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WSB2 MUTATED	1	0	4	2	0	0
WSB2 WILD-TYPE	46	39	31	30	23	35

Figure S2305. Get High-res Image Gene #713: 'WSB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SMAD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6999. Gene #714: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SMAD7 MUTATED	1	2	0	1	0
SMAD7 WILD-TYPE	78	124	27	42	12

'SMAD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 0.91

Table S7000. Gene #714: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SMAD7 MUTATED	1	2	0	0
SMAD7 WILD-TYPE	70	74	34	63

'SMAD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 0.86

Table S7001. Gene #714: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SMAD7 MUTATED	0	2	1	1	0
SMAD7 WILD-TYPE	16	60	50	64	55

'SMAD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S7002. Gene #714: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SMAD7 MUTATED	0	1	2	1
SMAD7 WILD-TYPE	98	43	48	56

'SMAD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 0.9

Table S7003. Gene #714: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SMAD7 MUTATED	1	2	0	1	1
SMAD7 WILD-TYPE	61	57	40	36	58

'SMAD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 0.81

Table S7004. Gene #714: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SMAD7 MUTATED	3	0	2
SMAD7 WILD-TYPE	103	54	95

'SMAD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S7005. Gene #714: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SMAD7 MUTATED	4	0	1
SMAD7 WILD-TYPE	119	95	70

'SMAD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 0.79

Table S7006. Gene #714: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SMAD7 MUTATED	4	0	1
SMAD7 WILD-TYPE	153	63	68

'SMAD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.17

Table S7007. Gene #714: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SMAD7 MUTATED	2	1	0	0	0	0
SMAD7 WILD-TYPE	31	18	59	39	16	45

'SMAD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.61

Table S7008. Gene #714: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SMAD7 MUTATED	2	0	0	1	0	0
SMAD7 WILD-TYPE	45	39	35	31	23	35

'ROBO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.068

Table S7009. Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ROBO2 MUTATED	4	20	2	1	3
ROBO2 WILD-TYPE	75	106	25	42	9

Figure S2306. Get High-res Image Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ROBO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00288 (Fisher's exact test), Q value = 0.033

Table S7010. Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ROBO2 MUTATED	2	15	3	3
ROBO2 WILD-TYPE	69	61	31	60

Figure S2307. Get High-res Image Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ROBO2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 0.85

Table S7011. Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ROBO2 MUTATED	2	7	5	5	8
ROBO2 WILD-TYPE	14	55	46	60	47

'ROBO2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0372 (Fisher's exact test), Q value = 0.14

Table S7012. Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ROBO2 MUTATED	9	10	2	6
ROBO2 WILD-TYPE	89	34	48	51

Figure S2308. Get High-res Image Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ROBO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00303 (Fisher's exact test), Q value = 0.034

Table S7013. Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ROBO2 MUTATED	13	1	5	7	4
ROBO2 WILD-TYPE	49	58	35	30	55

Figure S2309. Get High-res Image Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ROBO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0472 (Fisher's exact test), Q value = 0.15

Table S7014. Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ROBO2 MUTATED	7	6	17
ROBO2 WILD-TYPE	99	48	80

Figure S2310. Get High-res Image Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ROBO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.13

Table S7015. Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ROBO2 MUTATED	20	5	6
ROBO2 WILD-TYPE	103	90	65

Figure S2311. Get High-res Image Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ROBO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0636 (Fisher's exact test), Q value = 0.18

Table S7016. Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ROBO2 MUTATED	23	3	5
ROBO2 WILD-TYPE	134	60	64

'ROBO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.17

Table S7017. Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ROBO2 MUTATED	2	2	8	6	2	0
ROBO2 WILD-TYPE	31	17	51	33	14	45

'ROBO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.073

Table S7018. Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ROBO2 MUTATED	4	0	6	4	5	1
ROBO2 WILD-TYPE	43	39	29	28	18	34

Figure S2312. Get High-res Image Gene #715: 'ROBO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPATCH8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0019 (Fisher's exact test), Q value = 0.027

Table S7019. Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPATCH8 MUTATED	2	19	1	0	1
GPATCH8 WILD-TYPE	77	107	26	43	11

Figure S2313. Get High-res Image Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPATCH8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.38

Table S7020. Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPATCH8 MUTATED	3	8	5	4
GPATCH8 WILD-TYPE	68	68	29	59

'GPATCH8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.15

Table S7021. Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GPATCH8 MUTATED	1	9	6	1	3
GPATCH8 WILD-TYPE	15	53	45	64	52

Figure S2314. Get High-res Image Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GPATCH8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00688 (Fisher's exact test), Q value = 0.054

Table S7022. Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GPATCH8 MUTATED	4	9	5	2
GPATCH8 WILD-TYPE	94	35	45	55

Figure S2315. Get High-res Image Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPATCH8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00287 (Fisher's exact test), Q value = 0.033

Table S7023. Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GPATCH8 MUTATED	9	1	4	3	0
GPATCH8 WILD-TYPE	53	58	36	34	59

Figure S2316. Get High-res Image Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPATCH8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.079

Table S7024. Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GPATCH8 MUTATED	6	0	11
GPATCH8 WILD-TYPE	100	54	86

Figure S2317. Get High-res Image Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.1

Table S7025. Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GPATCH8 MUTATED	16	3	4
GPATCH8 WILD-TYPE	107	92	67

Figure S2318. Get High-res Image Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.32

Table S7026. Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GPATCH8 MUTATED	17	3	3
GPATCH8 WILD-TYPE	140	60	66

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.28

Table S7027. Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GPATCH8 MUTATED	3	2	9	1	1	1
GPATCH8 WILD-TYPE	30	17	50	38	15	44

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00728 (Fisher's exact test), Q value = 0.056

Table S7028. Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GPATCH8 MUTATED	7	1	7	0	1	1
GPATCH8 WILD-TYPE	40	38	28	32	22	34

Figure S2319. Get High-res Image Gene #716: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'AFP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.66

Table S7029. Gene #717: 'AFP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AFP MUTATED	0	3	0	0	0
AFP WILD-TYPE	79	123	27	43	12

'AFP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.56

Table S7030. Gene #717: 'AFP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
AFP MUTATED	0	2	1	0	0
AFP WILD-TYPE	16	60	50	65	55

'AFP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.7

Table S7031. Gene #717: 'AFP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
AFP MUTATED	1	1	1	0
AFP WILD-TYPE	97	43	49	57

'AFP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.71

Table S7032. Gene #717: 'AFP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
AFP MUTATED	1	2	0
AFP WILD-TYPE	122	93	71

'AFP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 0.85

Table S7033. Gene #717: 'AFP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
AFP MUTATED	2	1	0
AFP WILD-TYPE	155	62	69

'CPD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S7034. Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CPD MUTATED	0	7	1	1	0
CPD WILD-TYPE	79	119	26	42	12

'CPD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00625 (Fisher's exact test), Q value = 0.051

Table S7035. Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CPD MUTATED	0	7	0	1
CPD WILD-TYPE	71	69	34	62

Figure S2320. Get High-res Image Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CPD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.53

Table S7036. Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CPD MUTATED	0	2	2	0	3
CPD WILD-TYPE	16	60	49	65	52

'CPD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S7037. Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CPD MUTATED	0	6	1	0
CPD WILD-TYPE	98	38	49	57

Figure S2321. Get High-res Image Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CPD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00161 (Fisher's exact test), Q value = 0.024

Table S7038. Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CPD MUTATED	6	0	0	3	0
CPD WILD-TYPE	56	59	40	34	59

Figure S2322. Get High-res Image Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CPD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00682 (Fisher's exact test), Q value = 0.054

Table S7039. Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CPD MUTATED	1	0	8
CPD WILD-TYPE	105	54	89

Figure S2323. Get High-res Image Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CPD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00123 (Fisher's exact test), Q value = 0.02

Table S7040. Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CPD MUTATED	9	0	0
CPD WILD-TYPE	114	95	71

Figure S2324. Get High-res Image Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CPD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.26

Table S7041. Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CPD MUTATED	8	1	0
CPD WILD-TYPE	149	62	69

'CPD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.64

Table S7042. Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CPD MUTATED	2	1	2	2	0	0
CPD WILD-TYPE	31	18	57	37	16	45

'CPD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.4

Table S7043. Gene #718: 'CPD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CPD MUTATED	3	0	2	2	0	0
CPD WILD-TYPE	44	39	33	30	23	35

'RFX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S7044. Gene #719: 'RFX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RFX5 MUTATED	1	8	0	0	1
RFX5 WILD-TYPE	78	118	27	43	11

'RFX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0061 (Fisher's exact test), Q value = 0.05

Table S7045. Gene #719: 'RFX5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RFX5 MUTATED	1	8	1	0
RFX5 WILD-TYPE	70	68	33	63

Figure S2325. Get High-res Image Gene #719: 'RFX5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RFX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.49

Table S7046. Gene #719: 'RFX5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RFX5 MUTATED	1	2	2	0	2
RFX5 WILD-TYPE	15	60	49	65	53

'RFX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.58

Table S7047. Gene #719: 'RFX5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RFX5 MUTATED	2	3	1	1
RFX5 WILD-TYPE	96	41	49	56

'RFX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.55

Table S7048. Gene #719: 'RFX5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RFX5 MUTATED	4	1	3	1	1
RFX5 WILD-TYPE	58	58	37	36	58

'RFX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 0.11

Table S7049. Gene #719: 'RFX5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RFX5 MUTATED	1	1	8
RFX5 WILD-TYPE	105	53	89

Figure S2326. Get High-res Image Gene #719: 'RFX5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RFX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.091

Table S7050. Gene #719: 'RFX5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RFX5 MUTATED	8	0	2
RFX5 WILD-TYPE	115	95	69

Figure S2327. Get High-res Image Gene #719: 'RFX5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RFX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0756 (Fisher's exact test), Q value = 0.2

Table S7051. Gene #719: 'RFX5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RFX5 MUTATED	9	0	1
RFX5 WILD-TYPE	148	63	68

'RFX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.4

Table S7052. Gene #719: 'RFX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RFX5 MUTATED	3	1	2	3	0	0
RFX5 WILD-TYPE	30	18	57	36	16	45

'RFX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.24

Table S7053. Gene #719: 'RFX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RFX5 MUTATED	2	0	2	4	1	0
RFX5 WILD-TYPE	45	39	33	28	22	35

'FER MUTATION STATUS' versus 'CN_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.7

Table S7054. Gene #720: 'FER MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FER MUTATED	3	7	1	0	0
FER WILD-TYPE	76	119	26	43	12

'FER MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.44

Table S7055. Gene #720: 'FER MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FER MUTATED	2	6	1	1
FER WILD-TYPE	69	70	33	62

'FER MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.089

Table S7056. Gene #720: 'FER MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FER MUTATED	3	2	3	0	2
FER WILD-TYPE	13	60	48	65	53

Figure S2328. Get High-res Image Gene #720: 'FER MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FER MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00299 (Fisher's exact test), Q value = 0.034

Table S7057. Gene #720: 'FER MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FER MUTATED	4	6	0	0
FER WILD-TYPE	94	38	50	57

Figure S2329. Get High-res Image Gene #720: 'FER MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FER MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.22

Table S7058. Gene #720: 'FER MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FER MUTATED	6	0	1	1	2
FER WILD-TYPE	56	59	39	36	57

'FER MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0688 (Fisher's exact test), Q value = 0.19

Table S7059. Gene #720: 'FER MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FER MUTATED	3	0	7
FER WILD-TYPE	103	54	90

'FER MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.35

Table S7060. Gene #720: 'FER MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FER MUTATED	7	1	3
FER WILD-TYPE	116	94	68

'FER MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.43

Table S7061. Gene #720: 'FER MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FER MUTATED	9	1	1
FER WILD-TYPE	148	62	68

'FER MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.45

Table S7062. Gene #720: 'FER MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FER MUTATED	4	0	2	1	0	1
FER WILD-TYPE	29	19	57	38	16	44

'FER MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 0.95

Table S7063. Gene #720: 'FER MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FER MUTATED	2	1	2	2	0	1
FER WILD-TYPE	45	38	33	30	23	34

'SNRPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.57

Table S7064. Gene #721: 'SNRPA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SNRPA MUTATED	1	5	0	1	1
SNRPA WILD-TYPE	78	121	27	42	11

'SNRPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.33

Table S7065. Gene #721: 'SNRPA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SNRPA MUTATED	0	2	2	1
SNRPA WILD-TYPE	71	74	32	62

'SNRPA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.47

Table S7066. Gene #721: 'SNRPA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SNRPA MUTATED	1	3	2	0	2
SNRPA WILD-TYPE	15	59	49	65	53

'SNRPA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.36

Table S7067. Gene #721: 'SNRPA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SNRPA MUTATED	3	3	2	0
SNRPA WILD-TYPE	95	41	48	57

'SNRPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.098

Table S7068. Gene #721: 'SNRPA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SNRPA MUTATED	3	0	0	4	1
SNRPA WILD-TYPE	59	59	40	33	58

Figure S2330. Get High-res Image Gene #721: 'SNRPA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SNRPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.56

Table S7069. Gene #721: 'SNRPA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SNRPA MUTATED	2	1	5
SNRPA WILD-TYPE	104	53	92

'SNRPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S7070. Gene #721: 'SNRPA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SNRPA MUTATED	6	1	1
SNRPA WILD-TYPE	117	94	70

'SNRPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.36

Table S7071. Gene #721: 'SNRPA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SNRPA MUTATED	7	0	1
SNRPA WILD-TYPE	150	63	68

'SNRPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S7072. Gene #721: 'SNRPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SNRPA MUTATED	1	1	0	1	0	0
SNRPA WILD-TYPE	32	18	59	38	16	45

'SNRPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.57

Table S7073. Gene #721: 'SNRPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SNRPA MUTATED	0	1	0	0	1	1
SNRPA WILD-TYPE	47	38	35	32	22	34

'C2ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0804 (Fisher's exact test), Q value = 0.21

Table S7074. Gene #722: 'C2ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C2ORF43 MUTATED	0	1	2	0	0
C2ORF43 WILD-TYPE	79	125	25	43	12

'C2ORF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0466 (Fisher's exact test), Q value = 0.15

Table S7075. Gene #722: 'C2ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C2ORF43 MUTATED	0	0	0	0	3
C2ORF43 WILD-TYPE	16	62	51	65	52

Figure S2331. Get High-res Image Gene #722: 'C2ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C2ORF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.086 (Fisher's exact test), Q value = 0.21

Table S7076. Gene #722: 'C2ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C2ORF43 MUTATED	0	2	0	1
C2ORF43 WILD-TYPE	98	42	50	56

'C2ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.11

Table S7077. Gene #722: 'C2ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C2ORF43 MUTATED	0	0	2	1	0
C2ORF43 WILD-TYPE	62	59	38	36	59

Figure S2332. Get High-res Image Gene #722: 'C2ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C2ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.71

Table S7078. Gene #722: 'C2ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C2ORF43 MUTATED	1	0	2
C2ORF43 WILD-TYPE	105	54	95

'C2ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.85

Table S7079. Gene #722: 'C2ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C2ORF43 MUTATED	2	1	0
C2ORF43 WILD-TYPE	121	94	71

'C2ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.56

Table S7080. Gene #722: 'C2ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C2ORF43 MUTATED	3	0	0
C2ORF43 WILD-TYPE	154	63	69

'TMEM109 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.37

Table S7081. Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TMEM109 MUTATED	0	6	0	2	0
TMEM109 WILD-TYPE	79	120	27	41	12

'TMEM109 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0347 (Fisher's exact test), Q value = 0.13

Table S7082. Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TMEM109 MUTATED	0	6	1	1
TMEM109 WILD-TYPE	71	70	33	62

Figure S2333. Get High-res Image Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TMEM109 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.38

Table S7083. Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TMEM109 MUTATED	1	3	2	0	1
TMEM109 WILD-TYPE	15	59	49	65	54

'TMEM109 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00608 (Fisher's exact test), Q value = 0.05

Table S7084. Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TMEM109 MUTATED	1	5	1	0
TMEM109 WILD-TYPE	97	39	49	57

Figure S2334. Get High-res Image Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TMEM109 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00266 (Fisher's exact test), Q value = 0.032

Table S7085. Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TMEM109 MUTATED	6	0	0	2	0
TMEM109 WILD-TYPE	56	59	40	35	59

Figure S2335. Get High-res Image Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TMEM109 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0748 (Fisher's exact test), Q value = 0.2

Table S7086. Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TMEM109 MUTATED	2	0	6
TMEM109 WILD-TYPE	104	54	91

'TMEM109 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.13

Table S7087. Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TMEM109 MUTATED	7	1	0
TMEM109 WILD-TYPE	116	94	71

Figure S2336. Get High-res Image Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TMEM109 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0431 (Fisher's exact test), Q value = 0.15

Table S7088. Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TMEM109 MUTATED	8	0	0
TMEM109 WILD-TYPE	149	63	69

Figure S2337. Get High-res Image Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TMEM109 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.43

Table S7089. Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TMEM109 MUTATED	0	1	4	2	0	0
TMEM109 WILD-TYPE	33	18	55	37	16	45

'TMEM109 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.15

Table S7090. Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TMEM109 MUTATED	2	0	4	0	1	0
TMEM109 WILD-TYPE	45	39	31	32	22	35

Figure S2338. Get High-res Image Gene #723: 'TMEM109 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SRRT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0546 (Fisher's exact test), Q value = 0.17

Table S7091. Gene #724: 'SRRT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SRRT MUTATED	0	10	1	1	0
SRRT WILD-TYPE	79	116	26	42	12

'SRRT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.2

Table S7092. Gene #724: 'SRRT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SRRT MUTATED	1	7	0	2
SRRT WILD-TYPE	70	69	34	61

'SRRT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0817 (Fisher's exact test), Q value = 0.21

Table S7093. Gene #724: 'SRRT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SRRT MUTATED	2	4	2	0	2
SRRT WILD-TYPE	14	58	49	65	53

'SRRT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.61

Table S7094. Gene #724: 'SRRT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SRRT MUTATED	3	3	3	1
SRRT WILD-TYPE	95	41	47	56

'SRRT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.54

Table S7095. Gene #724: 'SRRT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SRRT MUTATED	5	1	2	1	1
SRRT WILD-TYPE	57	58	38	36	58

'SRRT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.55

Table S7096. Gene #724: 'SRRT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SRRT MUTATED	3	1	6
SRRT WILD-TYPE	103	53	91

'SRRT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.14

Table S7097. Gene #724: 'SRRT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SRRT MUTATED	9	3	0
SRRT WILD-TYPE	114	92	71

Figure S2339. Get High-res Image Gene #724: 'SRRT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SRRT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.32

Table S7098. Gene #724: 'SRRT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SRRT MUTATED	10	1	1
SRRT WILD-TYPE	147	62	68

'SRRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.54

Table S7099. Gene #724: 'SRRT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SRRT MUTATED	0	2	4	2	1	1
SRRT WILD-TYPE	33	17	55	37	15	44

'SRRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.5

Table S7100. Gene #724: 'SRRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SRRT MUTATED	3	1	4	0	1	1
SRRT WILD-TYPE	44	38	31	32	22	34

'CASP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 0.87

Table S7101. Gene #725: 'CASP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CASP1 MUTATED	2	2	0	0	0
CASP1 WILD-TYPE	77	124	27	43	12

'CASP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.72

Table S7102. Gene #725: 'CASP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CASP1 MUTATED	1	2	1	0
CASP1 WILD-TYPE	70	74	33	63

'CASP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.36

Table S7103. Gene #725: 'CASP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CASP1 MUTATED	0	0	2	0	2
CASP1 WILD-TYPE	16	62	49	65	53

'CASP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.47

Table S7104. Gene #725: 'CASP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CASP1 MUTATED	1	2	0	1
CASP1 WILD-TYPE	97	42	50	56

'CASP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.71

Table S7105. Gene #725: 'CASP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CASP1 MUTATED	2	0	0	1	1
CASP1 WILD-TYPE	60	59	40	36	58

'CASP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.77

Table S7106. Gene #725: 'CASP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CASP1 MUTATED	2	0	2
CASP1 WILD-TYPE	104	54	95

'CASP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.51

Table S7107. Gene #725: 'CASP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CASP1 MUTATED	3	0	1
CASP1 WILD-TYPE	120	95	70

'CASP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 0.87

Table S7108. Gene #725: 'CASP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CASP1 MUTATED	3	0	1
CASP1 WILD-TYPE	154	63	68

'CASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.57

Table S7109. Gene #725: 'CASP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CASP1 MUTATED	1	1	2	0	0	0
CASP1 WILD-TYPE	32	18	57	39	16	45

'CASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 0.84

Table S7110. Gene #725: 'CASP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CASP1 MUTATED	1	0	1	0	1	1
CASP1 WILD-TYPE	46	39	34	32	22	34

'NOL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.08 (Fisher's exact test), Q value = 0.2

Table S7111. Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NOL6 MUTATED	1	12	1	1	1
NOL6 WILD-TYPE	78	114	26	42	11

'NOL6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0054

Table S7112. Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NOL6 MUTATED	0	12	1	1
NOL6 WILD-TYPE	71	64	33	62

Figure S2340. Get High-res Image Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NOL6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.26

Table S7113. Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
NOL6 MUTATED	0	3	3	1	7
NOL6 WILD-TYPE	16	59	48	64	48

'NOL6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0432 (Fisher's exact test), Q value = 0.15

Table S7114. Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
NOL6 MUTATED	2	6	2	4
NOL6 WILD-TYPE	96	38	48	53

Figure S2341. Get High-res Image Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NOL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 0.13

Table S7115. Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
NOL6 MUTATED	6	3	2	5	0
NOL6 WILD-TYPE	56	56	38	32	59

Figure S2342. Get High-res Image Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NOL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00684 (Fisher's exact test), Q value = 0.054

Table S7116. Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
NOL6 MUTATED	2	2	12
NOL6 WILD-TYPE	104	52	85

Figure S2343. Get High-res Image Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NOL6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00344 (Fisher's exact test), Q value = 0.036

Table S7117. Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
NOL6 MUTATED	14	2	1
NOL6 WILD-TYPE	109	93	70

Figure S2344. Get High-res Image Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOL6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.37

Table S7118. Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
NOL6 MUTATED	13	2	2
NOL6 WILD-TYPE	144	61	67

'NOL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.71

Table S7119. Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
NOL6 MUTATED	3	2	5	1	0	2
NOL6 WILD-TYPE	30	17	54	38	16	43

'NOL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.62

Table S7120. Gene #726: 'NOL6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
NOL6 MUTATED	4	2	3	3	1	0
NOL6 WILD-TYPE	43	37	32	29	22	35

'AKR7A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 0.85

Table S7121. Gene #727: 'AKR7A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AKR7A2 MUTATED	1	5	0	1	0
AKR7A2 WILD-TYPE	78	121	27	42	12

'AKR7A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0038 (Fisher's exact test), Q value = 0.038

Table S7122. Gene #727: 'AKR7A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AKR7A2 MUTATED	0	6	0	0
AKR7A2 WILD-TYPE	71	70	34	63

Figure S2345. Get High-res Image Gene #727: 'AKR7A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AKR7A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.18

Table S7123. Gene #727: 'AKR7A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
AKR7A2 MUTATED	1	1	4	0	1
AKR7A2 WILD-TYPE	15	61	47	65	54

'AKR7A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00417 (Fisher's exact test), Q value = 0.04

Table S7124. Gene #727: 'AKR7A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
AKR7A2 MUTATED	2	5	0	0
AKR7A2 WILD-TYPE	96	39	50	57

Figure S2346. Get High-res Image Gene #727: 'AKR7A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AKR7A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.41

Table S7125. Gene #727: 'AKR7A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
AKR7A2 MUTATED	3	1	0	3	1
AKR7A2 WILD-TYPE	59	58	40	34	58

'AKR7A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0902 (Fisher's exact test), Q value = 0.22

Table S7126. Gene #727: 'AKR7A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
AKR7A2 MUTATED	1	1	6
AKR7A2 WILD-TYPE	105	53	91

'AKR7A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.13

Table S7127. Gene #727: 'AKR7A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
AKR7A2 MUTATED	7	1	0
AKR7A2 WILD-TYPE	116	94	71

Figure S2347. Get High-res Image Gene #727: 'AKR7A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AKR7A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.79

Table S7128. Gene #727: 'AKR7A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
AKR7A2 MUTATED	6	1	1
AKR7A2 WILD-TYPE	151	62	68

'AKR7A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 0.88

Table S7129. Gene #727: 'AKR7A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
AKR7A2 MUTATED	2	0	1	1	0	1
AKR7A2 WILD-TYPE	31	19	58	38	16	44

'AKR7A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 0.84

Table S7130. Gene #727: 'AKR7A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
AKR7A2 MUTATED	2	1	1	0	1	0
AKR7A2 WILD-TYPE	45	38	34	32	22	35

'TNKS1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00986 (Fisher's exact test), Q value = 0.066

Table S7131. Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TNKS1BP1 MUTATED	1	14	2	0	1
TNKS1BP1 WILD-TYPE	78	112	25	43	11

Figure S2348. Get High-res Image Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.11

Table S7132. Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TNKS1BP1 MUTATED	1	10	1	3
TNKS1BP1 WILD-TYPE	70	66	33	60

Figure S2349. Get High-res Image Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.51

Table S7133. Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TNKS1BP1 MUTATED	1	7	2	2	4
TNKS1BP1 WILD-TYPE	15	55	49	63	51

'TNKS1BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.08

Table S7134. Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TNKS1BP1 MUTATED	3	6	6	1
TNKS1BP1 WILD-TYPE	95	38	44	56

Figure S2350. Get High-res Image Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TNKS1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00631 (Fisher's exact test), Q value = 0.051

Table S7135. Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TNKS1BP1 MUTATED	8	0	4	3	1
TNKS1BP1 WILD-TYPE	54	59	36	34	58

Figure S2351. Get High-res Image Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.25

Table S7136. Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TNKS1BP1 MUTATED	5	1	10
TNKS1BP1 WILD-TYPE	101	53	87

'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00401 (Fisher's exact test), Q value = 0.04

Table S7137. Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TNKS1BP1 MUTATED	15	3	1
TNKS1BP1 WILD-TYPE	108	92	70

Figure S2352. Get High-res Image Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.4

Table S7138. Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TNKS1BP1 MUTATED	14	2	3
TNKS1BP1 WILD-TYPE	143	61	66

'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.61

Table S7139. Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TNKS1BP1 MUTATED	3	2	4	4	0	1
TNKS1BP1 WILD-TYPE	30	17	55	35	16	44

'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0266 (Fisher's exact test), Q value = 0.11

Table S7140. Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TNKS1BP1 MUTATED	4	0	4	0	4	2
TNKS1BP1 WILD-TYPE	43	39	31	32	19	33

Figure S2353. Get High-res Image Gene #728: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CALCRL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.084

Table S7141. Gene #729: 'CALCRL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CALCRL MUTATED	0	3	2	1	2
CALCRL WILD-TYPE	79	123	25	42	10

Figure S2354. Get High-res Image Gene #729: 'CALCRL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CALCRL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.56

Table S7142. Gene #729: 'CALCRL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CALCRL MUTATED	1	3	1	0
CALCRL WILD-TYPE	70	73	33	63

'CALCRL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.14

Table S7143. Gene #729: 'CALCRL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CALCRL MUTATED	0	4	0	0	4
CALCRL WILD-TYPE	16	58	51	65	51

Figure S2355. Get High-res Image Gene #729: 'CALCRL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CALCRL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00712 (Fisher's exact test), Q value = 0.055

Table S7144. Gene #729: 'CALCRL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CALCRL MUTATED	1	5	0	2
CALCRL WILD-TYPE	97	39	50	55

Figure S2356. Get High-res Image Gene #729: 'CALCRL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CALCRL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.42

Table S7145. Gene #729: 'CALCRL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CALCRL MUTATED	4	1	1	1	0
CALCRL WILD-TYPE	58	58	39	36	59

'CALCRL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 0.93

Table S7146. Gene #729: 'CALCRL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CALCRL MUTATED	3	2	2
CALCRL WILD-TYPE	103	52	95

'CALCRL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S7147. Gene #729: 'CALCRL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CALCRL MUTATED	6	2	0
CALCRL WILD-TYPE	117	93	71

'CALCRL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.46

Table S7148. Gene #729: 'CALCRL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CALCRL MUTATED	6	2	0
CALCRL WILD-TYPE	151	61	69

'CALCRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 0.98

Table S7149. Gene #729: 'CALCRL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CALCRL MUTATED	0	0	2	1	0	2
CALCRL WILD-TYPE	33	19	57	38	16	43

'CALCRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 0.98

Table S7150. Gene #729: 'CALCRL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CALCRL MUTATED	1	1	1	1	1	0
CALCRL WILD-TYPE	46	38	34	31	22	35

'OSBPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 0.83

Table S7151. Gene #730: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OSBPL2 MUTATED	3	4	0	0	0
OSBPL2 WILD-TYPE	76	122	27	43	12

'OSBPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.69

Table S7152. Gene #730: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OSBPL2 MUTATED	2	1	1	0
OSBPL2 WILD-TYPE	69	75	33	63

'OSBPL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0088 (Fisher's exact test), Q value = 0.062

Table S7153. Gene #730: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OSBPL2 MUTATED	0	6	0	0	1
OSBPL2 WILD-TYPE	16	56	51	65	54

Figure S2357. Get High-res Image Gene #730: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OSBPL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00174 (Fisher's exact test), Q value = 0.026

Table S7154. Gene #730: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OSBPL2 MUTATED	0	3	4	0
OSBPL2 WILD-TYPE	98	41	46	57

Figure S2358. Get High-res Image Gene #730: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OSBPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.67

Table S7155. Gene #730: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OSBPL2 MUTATED	2	0	0	1	2
OSBPL2 WILD-TYPE	60	59	40	36	57

'OSBPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.42

Table S7156. Gene #730: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OSBPL2 MUTATED	4	0	1
OSBPL2 WILD-TYPE	102	54	96

'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.29

Table S7157. Gene #730: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OSBPL2 MUTATED	5	0	2
OSBPL2 WILD-TYPE	118	95	69

'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.63

Table S7158. Gene #730: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OSBPL2 MUTATED	5	0	2
OSBPL2 WILD-TYPE	152	63	67

'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0938 (Fisher's exact test), Q value = 0.23

Table S7159. Gene #730: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OSBPL2 MUTATED	3	0	1	0	0	0
OSBPL2 WILD-TYPE	30	19	58	39	16	45

'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 0.84

Table S7160. Gene #730: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OSBPL2 MUTATED	2	0	1	0	0	1
OSBPL2 WILD-TYPE	45	39	34	32	23	34

'KLHL14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.085

Table S7161. Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KLHL14 MUTATED	1	13	2	0	1
KLHL14 WILD-TYPE	78	113	25	43	11

Figure S2359. Get High-res Image Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KLHL14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00714 (Fisher's exact test), Q value = 0.055

Table S7162. Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KLHL14 MUTATED	1	10	2	1
KLHL14 WILD-TYPE	70	66	32	62

Figure S2360. Get High-res Image Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KLHL14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0408 (Fisher's exact test), Q value = 0.14

Table S7163. Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KLHL14 MUTATED	0	5	4	0	6
KLHL14 WILD-TYPE	16	57	47	65	49

Figure S2361. Get High-res Image Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KLHL14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 0.12

Table S7164. Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KLHL14 MUTATED	4	7	3	1
KLHL14 WILD-TYPE	94	37	47	56

Figure S2362. Get High-res Image Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KLHL14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.015

Table S7165. Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KLHL14 MUTATED	10	1	0	4	1
KLHL14 WILD-TYPE	52	58	40	33	58

Figure S2363. Get High-res Image Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KLHL14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.14

Table S7166. Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KLHL14 MUTATED	3	2	11
KLHL14 WILD-TYPE	103	52	86

Figure S2364. Get High-res Image Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KLHL14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.18

Table S7167. Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KLHL14 MUTATED	12	3	2
KLHL14 WILD-TYPE	111	92	69

'KLHL14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0633 (Fisher's exact test), Q value = 0.18

Table S7168. Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KLHL14 MUTATED	14	2	1
KLHL14 WILD-TYPE	143	61	68

'KLHL14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 0.91

Table S7169. Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KLHL14 MUTATED	2	1	5	4	0	2
KLHL14 WILD-TYPE	31	18	54	35	16	43

'KLHL14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.67

Table S7170. Gene #731: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KLHL14 MUTATED	5	2	2	1	3	1
KLHL14 WILD-TYPE	42	37	33	31	20	34

'USP28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.37

Table S7171. Gene #732: 'USP28 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
USP28 MUTATED	2	9	2	0	0
USP28 WILD-TYPE	77	117	25	43	12

'USP28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.16

Table S7172. Gene #732: 'USP28 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
USP28 MUTATED	1	7	3	1
USP28 WILD-TYPE	70	69	31	62

'USP28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.44

Table S7173. Gene #732: 'USP28 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
USP28 MUTATED	2	3	3	1	4
USP28 WILD-TYPE	14	59	48	64	51

'USP28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.085

Table S7174. Gene #732: 'USP28 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
USP28 MUTATED	4	6	3	0
USP28 WILD-TYPE	94	38	47	57

Figure S2365. Get High-res Image Gene #732: 'USP28 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'USP28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.15

Table S7175. Gene #732: 'USP28 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
USP28 MUTATED	4	1	0	5	2
USP28 WILD-TYPE	58	58	40	32	57

Figure S2366. Get High-res Image Gene #732: 'USP28 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'USP28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.46

Table S7176. Gene #732: 'USP28 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
USP28 MUTATED	4	1	7
USP28 WILD-TYPE	102	53	90

'USP28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.28

Table S7177. Gene #732: 'USP28 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
USP28 MUTATED	9	3	1
USP28 WILD-TYPE	114	92	70

'USP28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0414 (Fisher's exact test), Q value = 0.14

Table S7178. Gene #732: 'USP28 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
USP28 MUTATED	11	2	0
USP28 WILD-TYPE	146	61	69

Figure S2367. Get High-res Image Gene #732: 'USP28 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'USP28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.62

Table S7179. Gene #732: 'USP28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
USP28 MUTATED	2	2	5	1	0	1
USP28 WILD-TYPE	31	17	54	38	16	44

'USP28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.41

Table S7180. Gene #732: 'USP28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
USP28 MUTATED	4	1	4	1	1	0
USP28 WILD-TYPE	43	38	31	31	22	35

'C19ORF70 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.3

Table S7181. Gene #733: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C19ORF70 MUTATED	0	3	1	1	1
C19ORF70 WILD-TYPE	79	123	26	42	11

'C19ORF70 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.078

Table S7182. Gene #733: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C19ORF70 MUTATED	0	5	0	0
C19ORF70 WILD-TYPE	71	71	34	63

Figure S2368. Get High-res Image Gene #733: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C19ORF70 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0849 (Fisher's exact test), Q value = 0.21

Table S7183. Gene #733: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C19ORF70 MUTATED	0	4	0	0	1
C19ORF70 WILD-TYPE	16	58	51	65	54

'C19ORF70 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0765 (Fisher's exact test), Q value = 0.2

Table S7184. Gene #733: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C19ORF70 MUTATED	1	3	1	0
C19ORF70 WILD-TYPE	97	41	49	57

'C19ORF70 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 0.16

Table S7185. Gene #733: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C19ORF70 MUTATED	3	0	0	2	0
C19ORF70 WILD-TYPE	59	59	40	35	59

'C19ORF70 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0735 (Fisher's exact test), Q value = 0.2

Table S7186. Gene #733: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C19ORF70 MUTATED	0	1	4
C19ORF70 WILD-TYPE	106	53	93

'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.29

Table S7187. Gene #733: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C19ORF70 MUTATED	5	1	0
C19ORF70 WILD-TYPE	118	94	71

'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S7188. Gene #733: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C19ORF70 MUTATED	6	0	0
C19ORF70 WILD-TYPE	151	63	69

'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S7189. Gene #733: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C19ORF70 MUTATED	0	2	1	2	0	0
C19ORF70 WILD-TYPE	33	17	58	37	16	45

'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0364 (Fisher's exact test), Q value = 0.13

Table S7190. Gene #733: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C19ORF70 MUTATED	4	0	0	0	1	0
C19ORF70 WILD-TYPE	43	39	35	32	22	35

Figure S2369. Get High-res Image Gene #733: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.6

Table S7191. Gene #734: 'SLA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLA MUTATED	0	4	0	0	0
SLA WILD-TYPE	79	122	27	43	12

'SLA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.13

Table S7192. Gene #734: 'SLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLA MUTATED	0	4	0	0
SLA WILD-TYPE	71	72	34	63

Figure S2370. Get High-res Image Gene #734: 'SLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.1

Table S7193. Gene #734: 'SLA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLA MUTATED	4	0	0	0	0
SLA WILD-TYPE	58	59	40	37	59

Figure S2371. Get High-res Image Gene #734: 'SLA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0491 (Fisher's exact test), Q value = 0.16

Table S7194. Gene #734: 'SLA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLA MUTATED	0	0	4
SLA WILD-TYPE	106	54	93

Figure S2372. Get High-res Image Gene #734: 'SLA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.51

Table S7195. Gene #734: 'SLA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLA MUTATED	3	0	1
SLA WILD-TYPE	120	95	70

'SLA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.56

Table S7196. Gene #734: 'SLA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLA MUTATED	4	0	0
SLA WILD-TYPE	153	63	69

'SLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.37

Table S7197. Gene #734: 'SLA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLA MUTATED	0	0	1	3	0	0
SLA WILD-TYPE	33	19	58	36	16	45

'SLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 0.79

Table S7198. Gene #734: 'SLA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLA MUTATED	2	0	1	1	0	0
SLA WILD-TYPE	45	39	34	31	23	35

'FOXA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.24

Table S7199. Gene #735: 'FOXA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FOXA3 MUTATED	0	5	1	0	1
FOXA3 WILD-TYPE	79	121	26	43	11

'FOXA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S7200. Gene #735: 'FOXA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FOXA3 MUTATED	0	2	2	1
FOXA3 WILD-TYPE	71	74	32	62

'FOXA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.45

Table S7201. Gene #735: 'FOXA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FOXA3 MUTATED	0	2	3	0	1
FOXA3 WILD-TYPE	16	60	48	65	54

'FOXA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.099

Table S7202. Gene #735: 'FOXA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FOXA3 MUTATED	1	4	1	0
FOXA3 WILD-TYPE	97	40	49	57

Figure S2373. Get High-res Image Gene #735: 'FOXA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FOXA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.18

Table S7203. Gene #735: 'FOXA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FOXA3 MUTATED	4	0	1	1	0
FOXA3 WILD-TYPE	58	59	39	36	59

'FOXA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.41

Table S7204. Gene #735: 'FOXA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FOXA3 MUTATED	2	0	4
FOXA3 WILD-TYPE	104	54	93

'FOXA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 0.19

Table S7205. Gene #735: 'FOXA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FOXA3 MUTATED	6	1	0
FOXA3 WILD-TYPE	117	94	71

'FOXA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.54

Table S7206. Gene #735: 'FOXA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FOXA3 MUTATED	5	2	0
FOXA3 WILD-TYPE	152	61	69

'FOXA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.65

Table S7207. Gene #735: 'FOXA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FOXA3 MUTATED	0	1	3	0	0	1
FOXA3 WILD-TYPE	33	18	56	39	16	44

'FOXA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.38

Table S7208. Gene #735: 'FOXA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FOXA3 MUTATED	1	1	3	0	0	0
FOXA3 WILD-TYPE	46	38	32	32	23	35

'CSNK1G1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.63

Table S7209. Gene #736: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CSNK1G1 MUTATED	0	4	0	1	0
CSNK1G1 WILD-TYPE	79	122	27	42	12

'CSNK1G1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.14

Table S7210. Gene #736: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CSNK1G1 MUTATED	0	4	0	0
CSNK1G1 WILD-TYPE	71	72	34	63

Figure S2374. Get High-res Image Gene #736: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSNK1G1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.69

Table S7211. Gene #736: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CSNK1G1 MUTATED	0	1	1	0	2
CSNK1G1 WILD-TYPE	16	61	50	65	53

'CSNK1G1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S7212. Gene #736: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CSNK1G1 MUTATED	2	2	0	0
CSNK1G1 WILD-TYPE	96	42	50	57

'CSNK1G1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.13

Table S7213. Gene #736: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CSNK1G1 MUTATED	4	0	2	0	0
CSNK1G1 WILD-TYPE	58	59	38	37	59

Figure S2375. Get High-res Image Gene #736: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CSNK1G1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.24

Table S7214. Gene #736: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CSNK1G1 MUTATED	1	0	5
CSNK1G1 WILD-TYPE	105	54	92

'CSNK1G1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.085

Table S7215. Gene #736: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CSNK1G1 MUTATED	6	0	0
CSNK1G1 WILD-TYPE	117	95	71

Figure S2376. Get High-res Image Gene #736: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CSNK1G1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.61

Table S7216. Gene #736: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CSNK1G1 MUTATED	5	0	1
CSNK1G1 WILD-TYPE	152	63	68

'CSNK1G1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.27

Table S7217. Gene #736: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CSNK1G1 MUTATED	2	0	0	2	0	0
CSNK1G1 WILD-TYPE	31	19	59	37	16	45

'CSNK1G1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0245 (Fisher's exact test), Q value = 0.1

Table S7218. Gene #736: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CSNK1G1 MUTATED	4	0	0	0	0	0
CSNK1G1 WILD-TYPE	43	39	35	32	23	35

Figure S2377. Get High-res Image Gene #736: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC7A13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 0.13

Table S7219. Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC7A13 MUTATED	0	9	0	0	0
SLC7A13 WILD-TYPE	79	117	27	43	12

Figure S2378. Get High-res Image Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC7A13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00587 (Fisher's exact test), Q value = 0.049

Table S7220. Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC7A13 MUTATED	0	6	2	0
SLC7A13 WILD-TYPE	71	70	32	63

Figure S2379. Get High-res Image Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC7A13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.24

Table S7221. Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SLC7A13 MUTATED	0	1	4	0	1
SLC7A13 WILD-TYPE	16	61	47	65	54

'SLC7A13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 0.097

Table S7222. Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SLC7A13 MUTATED	2	4	0	0
SLC7A13 WILD-TYPE	96	40	50	57

Figure S2380. Get High-res Image Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC7A13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.15

Table S7223. Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SLC7A13 MUTATED	6	1	1	1	0
SLC7A13 WILD-TYPE	56	58	39	36	59

Figure S2381. Get High-res Image Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC7A13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.42

Table S7224. Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SLC7A13 MUTATED	2	1	6
SLC7A13 WILD-TYPE	104	53	91

'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.099

Table S7225. Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SLC7A13 MUTATED	8	1	0
SLC7A13 WILD-TYPE	115	94	71

Figure S2382. Get High-res Image Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S7226. Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SLC7A13 MUTATED	8	1	0
SLC7A13 WILD-TYPE	149	62	69

'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.73

Table S7227. Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SLC7A13 MUTATED	1	2	2	1	0	1
SLC7A13 WILD-TYPE	32	17	57	38	16	44

'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.62

Table S7228. Gene #737: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SLC7A13 MUTATED	3	1	2	0	1	0
SLC7A13 WILD-TYPE	44	38	33	32	22	35

'SPAG17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.48

Table S7229. Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SPAG17 MUTATED	3	14	1	3	0
SPAG17 WILD-TYPE	76	112	26	40	12

'SPAG17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.074

Table S7230. Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SPAG17 MUTATED	2	12	3	2
SPAG17 WILD-TYPE	69	64	31	61

Figure S2383. Get High-res Image Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPAG17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 0.56

Table S7231. Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SPAG17 MUTATED	3	5	4	3	5
SPAG17 WILD-TYPE	13	57	47	62	50

'SPAG17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00363 (Fisher's exact test), Q value = 0.037

Table S7232. Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SPAG17 MUTATED	6	10	2	2
SPAG17 WILD-TYPE	92	34	48	55

Figure S2384. Get High-res Image Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SPAG17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0083 (Fisher's exact test), Q value = 0.06

Table S7233. Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SPAG17 MUTATED	10	0	2	4	4
SPAG17 WILD-TYPE	52	59	38	33	55

Figure S2385. Get High-res Image Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SPAG17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.075

Table S7234. Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SPAG17 MUTATED	8	0	12
SPAG17 WILD-TYPE	98	54	85

Figure S2386. Get High-res Image Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SPAG17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0029

Table S7235. Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SPAG17 MUTATED	17	0	5
SPAG17 WILD-TYPE	106	95	66

Figure S2387. Get High-res Image Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SPAG17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.011

Table S7236. Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SPAG17 MUTATED	20	0	2
SPAG17 WILD-TYPE	137	63	67

Figure S2388. Get High-res Image Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SPAG17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 0.2

Table S7237. Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SPAG17 MUTATED	5	2	7	2	1	0
SPAG17 WILD-TYPE	28	17	52	37	15	45

'SPAG17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.091

Table S7238. Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SPAG17 MUTATED	7	0	6	2	0	2
SPAG17 WILD-TYPE	40	39	29	30	23	33

Figure S2389. Get High-res Image Gene #738: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PDS5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.17

Table S7239. Gene #739: 'PDS5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PDS5B MUTATED	0	8	2	3	1
PDS5B WILD-TYPE	79	118	25	40	11

'PDS5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00559 (Fisher's exact test), Q value = 0.048

Table S7240. Gene #739: 'PDS5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PDS5B MUTATED	0	8	2	1
PDS5B WILD-TYPE	71	68	32	62

Figure S2390. Get High-res Image Gene #739: 'PDS5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PDS5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 0.84

Table S7241. Gene #739: 'PDS5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PDS5B MUTATED	0	3	4	2	3
PDS5B WILD-TYPE	16	59	47	63	52

'PDS5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S7242. Gene #739: 'PDS5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PDS5B MUTATED	0	9	1	2
PDS5B WILD-TYPE	98	35	49	55

Figure S2391. Get High-res Image Gene #739: 'PDS5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PDS5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.3

Table S7243. Gene #739: 'PDS5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PDS5B MUTATED	5	2	3	2	0
PDS5B WILD-TYPE	57	57	37	35	59

'PDS5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.28

Table S7244. Gene #739: 'PDS5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PDS5B MUTATED	3	1	8
PDS5B WILD-TYPE	103	53	89

'PDS5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.11

Table S7245. Gene #739: 'PDS5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PDS5B MUTATED	11	2	1
PDS5B WILD-TYPE	112	93	70

Figure S2392. Get High-res Image Gene #739: 'PDS5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PDS5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0526 (Fisher's exact test), Q value = 0.16

Table S7246. Gene #739: 'PDS5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PDS5B MUTATED	11	3	0
PDS5B WILD-TYPE	146	60	69

'PDS5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.69

Table S7247. Gene #739: 'PDS5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PDS5B MUTATED	1	2	4	1	0	1
PDS5B WILD-TYPE	32	17	55	38	16	44

'PDS5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.52

Table S7248. Gene #739: 'PDS5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PDS5B MUTATED	3	1	2	3	0	0
PDS5B WILD-TYPE	44	38	33	29	23	35

'TAC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.72

Table S7249. Gene #740: 'TAC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TAC4 MUTATED	0	2	0	1	0
TAC4 WILD-TYPE	79	124	27	42	12

'TAC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S7250. Gene #740: 'TAC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TAC4 MUTATED	0	2	0	1
TAC4 WILD-TYPE	71	74	34	62

'TAC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.42

Table S7251. Gene #740: 'TAC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TAC4 MUTATED	2	0	0	1	0
TAC4 WILD-TYPE	60	59	40	36	59

'TAC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.71

Table S7252. Gene #740: 'TAC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TAC4 MUTATED	1	0	2
TAC4 WILD-TYPE	105	54	95

'TAC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.33

Table S7253. Gene #740: 'TAC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TAC4 MUTATED	3	0	0
TAC4 WILD-TYPE	120	95	71

'TAC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S7254. Gene #740: 'TAC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TAC4 MUTATED	2	1	0
TAC4 WILD-TYPE	155	62	69

'PFAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S7255. Gene #741: 'PFAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PFAS MUTATED	1	7	0	0	1
PFAS WILD-TYPE	78	119	27	43	11

'PFAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.48

Table S7256. Gene #741: 'PFAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PFAS MUTATED	1	5	1	1
PFAS WILD-TYPE	70	71	33	62

'PFAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S7257. Gene #741: 'PFAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PFAS MUTATED	1	1	2	0	4
PFAS WILD-TYPE	15	61	49	65	51

'PFAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.7

Table S7258. Gene #741: 'PFAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PFAS MUTATED	3	3	1	1
PFAS WILD-TYPE	95	41	49	56

'PFAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.25

Table S7259. Gene #741: 'PFAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PFAS MUTATED	5	1	0	0	1
PFAS WILD-TYPE	57	58	40	37	58

'PFAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.71

Table S7260. Gene #741: 'PFAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PFAS MUTATED	2	1	4
PFAS WILD-TYPE	104	53	93

'PFAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.6

Table S7261. Gene #741: 'PFAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PFAS MUTATED	6	2	1
PFAS WILD-TYPE	117	93	70

'PFAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.6

Table S7262. Gene #741: 'PFAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PFAS MUTATED	7	1	1
PFAS WILD-TYPE	150	62	68

'PFAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7263. Gene #741: 'PFAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PFAS MUTATED	1	0	3	2	0	2
PFAS WILD-TYPE	32	19	56	37	16	43

'PFAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.74

Table S7264. Gene #741: 'PFAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PFAS MUTATED	2	1	3	0	1	1
PFAS WILD-TYPE	45	38	32	32	22	34

'ITGAV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.67

Table S7265. Gene #742: 'ITGAV MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ITGAV MUTATED	5	6	0	1	1
ITGAV WILD-TYPE	74	120	27	42	11

'ITGAV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.26

Table S7266. Gene #742: 'ITGAV MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ITGAV MUTATED	5	5	1	0
ITGAV WILD-TYPE	66	71	33	63

'ITGAV MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.52

Table S7267. Gene #742: 'ITGAV MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ITGAV MUTATED	1	2	0	4	2
ITGAV WILD-TYPE	15	60	51	61	53

'ITGAV MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 0.85

Table S7268. Gene #742: 'ITGAV MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ITGAV MUTATED	3	2	1	3
ITGAV WILD-TYPE	95	42	49	54

'ITGAV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 0.81

Table S7269. Gene #742: 'ITGAV MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ITGAV MUTATED	4	1	1	2	3
ITGAV WILD-TYPE	58	58	39	35	56

'ITGAV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 0.14

Table S7270. Gene #742: 'ITGAV MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ITGAV MUTATED	3	0	8
ITGAV WILD-TYPE	103	54	89

Figure S2393. Get High-res Image Gene #742: 'ITGAV MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ITGAV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.27

Table S7271. Gene #742: 'ITGAV MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ITGAV MUTATED	8	1	4
ITGAV WILD-TYPE	115	94	67

'ITGAV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.24

Table S7272. Gene #742: 'ITGAV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ITGAV MUTATED	10	0	3
ITGAV WILD-TYPE	147	63	66

'ITGAV MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.29

Table S7273. Gene #742: 'ITGAV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ITGAV MUTATED	3	1	1	3	1	0
ITGAV WILD-TYPE	30	18	58	36	15	45

'ITGAV MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0464 (Fisher's exact test), Q value = 0.15

Table S7274. Gene #742: 'ITGAV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ITGAV MUTATED	6	0	1	0	1	1
ITGAV WILD-TYPE	41	39	34	32	22	34

Figure S2394. Get High-res Image Gene #742: 'ITGAV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FBXO32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.4

Table S7275. Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FBXO32 MUTATED	0	6	0	1	0
FBXO32 WILD-TYPE	79	120	27	42	12

'FBXO32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.098

Table S7276. Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FBXO32 MUTATED	0	5	1	0
FBXO32 WILD-TYPE	71	71	33	63

Figure S2395. Get High-res Image Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FBXO32 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.66

Table S7277. Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FBXO32 MUTATED	0	2	2	0	2
FBXO32 WILD-TYPE	16	60	49	65	53

'FBXO32 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.01

Table S7278. Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FBXO32 MUTATED	0	5	1	0
FBXO32 WILD-TYPE	98	39	49	57

Figure S2396. Get High-res Image Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FBXO32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00969 (Fisher's exact test), Q value = 0.065

Table S7279. Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FBXO32 MUTATED	4	0	0	3	0
FBXO32 WILD-TYPE	58	59	40	34	59

Figure S2397. Get High-res Image Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FBXO32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00144 (Fisher's exact test), Q value = 0.022

Table S7280. Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FBXO32 MUTATED	0	0	7
FBXO32 WILD-TYPE	106	54	90

Figure S2398. Get High-res Image Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FBXO32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00712 (Fisher's exact test), Q value = 0.055

Table S7281. Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FBXO32 MUTATED	7	0	0
FBXO32 WILD-TYPE	116	95	71

Figure S2399. Get High-res Image Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FBXO32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0682 (Fisher's exact test), Q value = 0.19

Table S7282. Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FBXO32 MUTATED	7	0	0
FBXO32 WILD-TYPE	150	63	69

'FBXO32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.72

Table S7283. Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FBXO32 MUTATED	2	0	2	1	0	0
FBXO32 WILD-TYPE	31	19	57	38	16	45

'FBXO32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.61

Table S7284. Gene #743: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FBXO32 MUTATED	2	0	2	1	0	0
FBXO32 WILD-TYPE	45	39	33	31	23	35

'CHST9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.55

Table S7285. Gene #744: 'CHST9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CHST9 MUTATED	0	5	0	1	0
CHST9 WILD-TYPE	79	121	27	42	12

'CHST9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.37

Table S7286. Gene #744: 'CHST9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CHST9 MUTATED	0	2	1	0
CHST9 WILD-TYPE	71	74	33	63

'CHST9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 0.9

Table S7287. Gene #744: 'CHST9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CHST9 MUTATED	0	1	2	1	2
CHST9 WILD-TYPE	16	61	49	64	53

'CHST9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0115 (Fisher's exact test), Q value = 0.071

Table S7288. Gene #744: 'CHST9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CHST9 MUTATED	0	3	0	3
CHST9 WILD-TYPE	98	41	50	54

Figure S2400. Get High-res Image Gene #744: 'CHST9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CHST9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.69

Table S7289. Gene #744: 'CHST9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CHST9 MUTATED	2	2	1	0	0
CHST9 WILD-TYPE	60	57	39	37	59

'CHST9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7290. Gene #744: 'CHST9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CHST9 MUTATED	2	1	2
CHST9 WILD-TYPE	104	53	95

'CHST9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.69

Table S7291. Gene #744: 'CHST9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CHST9 MUTATED	4	1	1
CHST9 WILD-TYPE	119	94	70

'CHST9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.61

Table S7292. Gene #744: 'CHST9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CHST9 MUTATED	5	0	1
CHST9 WILD-TYPE	152	63	68

'CHST9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.38

Table S7293. Gene #744: 'CHST9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CHST9 MUTATED	1	1	0	1	0	0
CHST9 WILD-TYPE	32	18	59	38	16	45

'CHST9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.049 (Fisher's exact test), Q value = 0.16

Table S7294. Gene #744: 'CHST9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CHST9 MUTATED	0	0	0	2	1	0
CHST9 WILD-TYPE	47	39	35	30	22	35

Figure S2401. Get High-res Image Gene #744: 'CHST9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'STK36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.58

Table S7295. Gene #745: 'STK36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STK36 MUTATED	1	7	0	2	0
STK36 WILD-TYPE	78	119	27	41	12

'STK36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 0.92

Table S7296. Gene #745: 'STK36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
STK36 MUTATED	2	3	0	2
STK36 WILD-TYPE	69	73	34	61

'STK36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 0.85

Table S7297. Gene #745: 'STK36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
STK36 MUTATED	1	3	2	2	1
STK36 WILD-TYPE	15	59	49	63	54

'STK36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.36

Table S7298. Gene #745: 'STK36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
STK36 MUTATED	2	4	1	2
STK36 WILD-TYPE	96	40	49	55

'STK36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.32

Table S7299. Gene #745: 'STK36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
STK36 MUTATED	6	1	1	1	1
STK36 WILD-TYPE	56	58	39	36	58

'STK36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 0.89

Table S7300. Gene #745: 'STK36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
STK36 MUTATED	5	1	4
STK36 WILD-TYPE	101	53	93

'STK36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.42

Table S7301. Gene #745: 'STK36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
STK36 MUTATED	7	2	1
STK36 WILD-TYPE	116	93	70

'STK36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.36

Table S7302. Gene #745: 'STK36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
STK36 MUTATED	8	0	2
STK36 WILD-TYPE	149	63	67

'STK36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.64

Table S7303. Gene #745: 'STK36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
STK36 MUTATED	2	0	3	2	0	0
STK36 WILD-TYPE	31	19	56	37	16	45

'STK36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.29

Table S7304. Gene #745: 'STK36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
STK36 MUTATED	0	0	3	1	1	2
STK36 WILD-TYPE	47	39	32	31	22	33

'CCDC25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.53

Table S7305. Gene #746: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CCDC25 MUTATED	0	2	1	0	0
CCDC25 WILD-TYPE	79	124	26	43	12

'CCDC25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.4

Table S7306. Gene #746: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CCDC25 MUTATED	0	0	2	0	1
CCDC25 WILD-TYPE	16	62	49	65	54

'CCDC25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00517 (Fisher's exact test), Q value = 0.046

Table S7307. Gene #746: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CCDC25 MUTATED	0	3	0	0
CCDC25 WILD-TYPE	98	41	50	57

Figure S2402. Get High-res Image Gene #746: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.54

Table S7308. Gene #746: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CCDC25 MUTATED	1	0	1	1	0
CCDC25 WILD-TYPE	61	59	39	36	59

'CCDC25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.25

Table S7309. Gene #746: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CCDC25 MUTATED	0	0	3
CCDC25 WILD-TYPE	106	54	94

'CCDC25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.33

Table S7310. Gene #746: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CCDC25 MUTATED	3	0	0
CCDC25 WILD-TYPE	120	95	71

'CCDC25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.56

Table S7311. Gene #746: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CCDC25 MUTATED	3	0	0
CCDC25 WILD-TYPE	154	63	69

'TOP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.62

Table S7312. Gene #747: 'TOP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TOP1 MUTATED	3	7	0	0	0
TOP1 WILD-TYPE	76	119	27	43	12

'TOP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.29

Table S7313. Gene #747: 'TOP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TOP1 MUTATED	2	5	2	0
TOP1 WILD-TYPE	69	71	32	63

'TOP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.33

Table S7314. Gene #747: 'TOP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TOP1 MUTATED	0	3	4	0	2
TOP1 WILD-TYPE	16	59	47	65	53

'TOP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0021 (Fisher's exact test), Q value = 0.028

Table S7315. Gene #747: 'TOP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TOP1 MUTATED	0	5	3	1
TOP1 WILD-TYPE	98	39	47	56

Figure S2403. Get High-res Image Gene #747: 'TOP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TOP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.41

Table S7316. Gene #747: 'TOP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TOP1 MUTATED	5	1	0	2	2
TOP1 WILD-TYPE	57	58	40	35	57

'TOP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.29

Table S7317. Gene #747: 'TOP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TOP1 MUTATED	2	1	7
TOP1 WILD-TYPE	104	53	90

'TOP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.12

Table S7318. Gene #747: 'TOP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TOP1 MUTATED	7	0	3
TOP1 WILD-TYPE	116	95	68

Figure S2404. Get High-res Image Gene #747: 'TOP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TOP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.32

Table S7319. Gene #747: 'TOP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TOP1 MUTATED	6	0	4
TOP1 WILD-TYPE	151	63	65

'TOP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.66

Table S7320. Gene #747: 'TOP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TOP1 MUTATED	1	1	3	2	1	0
TOP1 WILD-TYPE	32	18	56	37	15	45

'TOP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.63

Table S7321. Gene #747: 'TOP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TOP1 MUTATED	2	0	1	2	2	1
TOP1 WILD-TYPE	45	39	34	30	21	34

'THBS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.24

Table S7322. Gene #748: 'THBS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
THBS1 MUTATED	1	11	0	3	0
THBS1 WILD-TYPE	78	115	27	40	12

'THBS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.11

Table S7323. Gene #748: 'THBS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
THBS1 MUTATED	1	8	3	1
THBS1 WILD-TYPE	70	68	31	62

Figure S2405. Get High-res Image Gene #748: 'THBS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'THBS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 0.92

Table S7324. Gene #748: 'THBS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
THBS1 MUTATED	0	4	2	2	3
THBS1 WILD-TYPE	16	58	49	63	52

'THBS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.42

Table S7325. Gene #748: 'THBS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
THBS1 MUTATED	3	4	3	1
THBS1 WILD-TYPE	95	40	47	56

'THBS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0715 (Fisher's exact test), Q value = 0.19

Table S7326. Gene #748: 'THBS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
THBS1 MUTATED	8	1	1	3	2
THBS1 WILD-TYPE	54	58	39	34	57

'THBS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0244 (Fisher's exact test), Q value = 0.1

Table S7327. Gene #748: 'THBS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
THBS1 MUTATED	5	0	10
THBS1 WILD-TYPE	101	54	87

Figure S2406. Get High-res Image Gene #748: 'THBS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'THBS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 0.099

Table S7328. Gene #748: 'THBS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
THBS1 MUTATED	11	1	3
THBS1 WILD-TYPE	112	94	68

Figure S2407. Get High-res Image Gene #748: 'THBS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'THBS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.3

Table S7329. Gene #748: 'THBS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
THBS1 MUTATED	12	1	2
THBS1 WILD-TYPE	145	62	67

'THBS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.34

Table S7330. Gene #748: 'THBS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
THBS1 MUTATED	1	2	4	4	1	0
THBS1 WILD-TYPE	32	17	55	35	15	45

'THBS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.39

Table S7331. Gene #748: 'THBS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
THBS1 MUTATED	5	1	3	1	2	0
THBS1 WILD-TYPE	42	38	32	31	21	35

'PGBD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.36

Table S7332. Gene #749: 'PGBD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PGBD2 MUTATED	0	2	0	0	1
PGBD2 WILD-TYPE	79	124	27	43	11

'PGBD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0868 (Fisher's exact test), Q value = 0.21

Table S7333. Gene #749: 'PGBD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PGBD2 MUTATED	0	3	0	0	0
PGBD2 WILD-TYPE	16	59	51	65	55

'PGBD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S7334. Gene #749: 'PGBD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PGBD2 MUTATED	1	2	0	0
PGBD2 WILD-TYPE	97	42	50	57

'PGBD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.6

Table S7335. Gene #749: 'PGBD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PGBD2 MUTATED	2	0	1
PGBD2 WILD-TYPE	121	95	70

'PGBD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.56

Table S7336. Gene #749: 'PGBD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PGBD2 MUTATED	3	0	0
PGBD2 WILD-TYPE	154	63	69

'SH3D19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.66

Table S7337. Gene #750: 'SH3D19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SH3D19 MUTATED	0	3	0	0	0
SH3D19 WILD-TYPE	79	123	27	43	12

'SH3D19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.53

Table S7338. Gene #750: 'SH3D19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SH3D19 MUTATED	0	1	0	0	2
SH3D19 WILD-TYPE	16	61	51	65	53

'SH3D19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0441 (Fisher's exact test), Q value = 0.15

Table S7339. Gene #750: 'SH3D19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SH3D19 MUTATED	0	2	1	0
SH3D19 WILD-TYPE	98	42	49	57

Figure S2408. Get High-res Image Gene #750: 'SH3D19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SH3D19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0629 (Fisher's exact test), Q value = 0.18

Table S7340. Gene #750: 'SH3D19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SH3D19 MUTATED	3	0	0	0	0
SH3D19 WILD-TYPE	59	59	40	37	59

'SH3D19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.71

Table S7341. Gene #750: 'SH3D19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SH3D19 MUTATED	1	0	2
SH3D19 WILD-TYPE	105	54	95

'SH3D19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.6

Table S7342. Gene #750: 'SH3D19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SH3D19 MUTATED	2	0	1
SH3D19 WILD-TYPE	121	95	70

'SH3D19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.56

Table S7343. Gene #750: 'SH3D19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SH3D19 MUTATED	3	0	0
SH3D19 WILD-TYPE	154	63	69

'CCDC30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.35

Table S7344. Gene #751: 'CCDC30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CCDC30 MUTATED	0	4	0	1	1
CCDC30 WILD-TYPE	79	122	27	42	11

'CCDC30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 0.16

Table S7345. Gene #751: 'CCDC30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CCDC30 MUTATED	0	5	0	1
CCDC30 WILD-TYPE	71	71	34	62

'CCDC30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.7

Table S7346. Gene #751: 'CCDC30 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CCDC30 MUTATED	0	2	1	0	2
CCDC30 WILD-TYPE	16	60	50	65	53

'CCDC30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0754 (Fisher's exact test), Q value = 0.2

Table S7347. Gene #751: 'CCDC30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CCDC30 MUTATED	1	3	1	0
CCDC30 WILD-TYPE	97	41	49	57

'CCDC30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0075

Table S7348. Gene #751: 'CCDC30 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CCDC30 MUTATED	7	0	0	0	0
CCDC30 WILD-TYPE	55	59	40	37	59

Figure S2409. Get High-res Image Gene #751: 'CCDC30 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCDC30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00148 (Fisher's exact test), Q value = 0.023

Table S7349. Gene #751: 'CCDC30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CCDC30 MUTATED	0	0	7
CCDC30 WILD-TYPE	106	54	90

Figure S2410. Get High-res Image Gene #751: 'CCDC30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00763 (Fisher's exact test), Q value = 0.057

Table S7350. Gene #751: 'CCDC30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CCDC30 MUTATED	7	0	0
CCDC30 WILD-TYPE	116	95	71

Figure S2411. Get High-res Image Gene #751: 'CCDC30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.19

Table S7351. Gene #751: 'CCDC30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CCDC30 MUTATED	7	0	0
CCDC30 WILD-TYPE	150	63	69

'CCDC30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.66

Table S7352. Gene #751: 'CCDC30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CCDC30 MUTATED	2	1	2	1	0	0
CCDC30 WILD-TYPE	31	18	57	38	16	45

'CCDC30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.45

Table S7353. Gene #751: 'CCDC30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CCDC30 MUTATED	3	0	1	2	0	0
CCDC30 WILD-TYPE	44	39	34	30	23	35

'C11ORF63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.68

Table S7354. Gene #752: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C11ORF63 MUTATED	5	7	0	1	1
C11ORF63 WILD-TYPE	74	119	27	42	11

'C11ORF63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.18

Table S7355. Gene #752: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C11ORF63 MUTATED	4	7	2	0
C11ORF63 WILD-TYPE	67	69	32	63

'C11ORF63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 0.91

Table S7356. Gene #752: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C11ORF63 MUTATED	1	4	2	2	3
C11ORF63 WILD-TYPE	15	58	49	63	52

'C11ORF63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0435 (Fisher's exact test), Q value = 0.15

Table S7357. Gene #752: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C11ORF63 MUTATED	3	6	2	1
C11ORF63 WILD-TYPE	95	38	48	56

Figure S2412. Get High-res Image Gene #752: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C11ORF63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.43

Table S7358. Gene #752: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C11ORF63 MUTATED	6	1	1	3	3
C11ORF63 WILD-TYPE	56	58	39	34	56

'C11ORF63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.42

Table S7359. Gene #752: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C11ORF63 MUTATED	5	1	8
C11ORF63 WILD-TYPE	101	53	89

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.1

Table S7360. Gene #752: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C11ORF63 MUTATED	11	1	3
C11ORF63 WILD-TYPE	112	94	68

Figure S2413. Get High-res Image Gene #752: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.3

Table S7361. Gene #752: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C11ORF63 MUTATED	12	1	2
C11ORF63 WILD-TYPE	145	62	67

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0434 (Fisher's exact test), Q value = 0.15

Table S7362. Gene #752: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C11ORF63 MUTATED	5	2	4	1	0	0
C11ORF63 WILD-TYPE	28	17	55	38	16	45

Figure S2414. Get High-res Image Gene #752: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.12

Table S7363. Gene #752: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C11ORF63 MUTATED	6	0	4	0	1	1
C11ORF63 WILD-TYPE	41	39	31	32	22	34

Figure S2415. Get High-res Image Gene #752: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LRRC52 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.55

Table S7364. Gene #753: 'LRRC52 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LRRC52 MUTATED	1	4	2	2	0
LRRC52 WILD-TYPE	78	122	25	41	12

'LRRC52 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S7365. Gene #753: 'LRRC52 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LRRC52 MUTATED	2	3	3	0
LRRC52 WILD-TYPE	69	73	31	63

'LRRC52 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.7

Table S7366. Gene #753: 'LRRC52 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
LRRC52 MUTATED	0	3	0	2	2
LRRC52 WILD-TYPE	16	59	51	63	53

'LRRC52 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.7

Table S7367. Gene #753: 'LRRC52 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
LRRC52 MUTATED	2	1	3	1
LRRC52 WILD-TYPE	96	43	47	56

'LRRC52 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 0.22

Table S7368. Gene #753: 'LRRC52 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
LRRC52 MUTATED	6	1	1	0	1
LRRC52 WILD-TYPE	56	58	39	37	58

'LRRC52 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.48

Table S7369. Gene #753: 'LRRC52 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
LRRC52 MUTATED	5	0	4
LRRC52 WILD-TYPE	101	54	93

'LRRC52 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.2

Table S7370. Gene #753: 'LRRC52 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
LRRC52 MUTATED	7	2	0
LRRC52 WILD-TYPE	116	93	71

'LRRC52 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.6

Table S7371. Gene #753: 'LRRC52 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
LRRC52 MUTATED	7	1	1
LRRC52 WILD-TYPE	150	62	68

'LRRC52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 0.83

Table S7372. Gene #753: 'LRRC52 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
LRRC52 MUTATED	0	1	3	2	0	1
LRRC52 WILD-TYPE	33	18	56	37	16	44

'LRRC52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.029 (Fisher's exact test), Q value = 0.12

Table S7373. Gene #753: 'LRRC52 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
LRRC52 MUTATED	3	0	1	0	3	0
LRRC52 WILD-TYPE	44	39	34	32	20	35

Figure S2416. Get High-res Image Gene #753: 'LRRC52 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TOX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.77

Table S7374. Gene #754: 'TOX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TOX MUTATED	2	6	1	0	0
TOX WILD-TYPE	77	120	26	43	12

'TOX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.49

Table S7375. Gene #754: 'TOX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TOX MUTATED	2	5	0	1
TOX WILD-TYPE	69	71	34	62

'TOX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00654 (Fisher's exact test), Q value = 0.052

Table S7376. Gene #754: 'TOX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TOX MUTATED	1	6	0	0	1
TOX WILD-TYPE	15	56	51	65	54

Figure S2417. Get High-res Image Gene #754: 'TOX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TOX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 0.21

Table S7377. Gene #754: 'TOX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TOX MUTATED	2	2	4	0
TOX WILD-TYPE	96	42	46	57

'TOX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 0.89

Table S7378. Gene #754: 'TOX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TOX MUTATED	1	2	1	2	2
TOX WILD-TYPE	61	57	39	35	57

'TOX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.33

Table S7379. Gene #754: 'TOX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TOX MUTATED	1	3	4
TOX WILD-TYPE	105	51	93

'TOX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 0.89

Table S7380. Gene #754: 'TOX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TOX MUTATED	3	4	2
TOX WILD-TYPE	120	91	69

'TOX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.7

Table S7381. Gene #754: 'TOX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TOX MUTATED	4	3	2
TOX WILD-TYPE	153	60	67

'TOX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 0.94

Table S7382. Gene #754: 'TOX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TOX MUTATED	2	0	2	2	0	1
TOX WILD-TYPE	31	19	57	37	16	44

'TOX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 0.84

Table S7383. Gene #754: 'TOX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TOX MUTATED	3	1	1	1	1	0
TOX WILD-TYPE	44	38	34	31	22	35

'FBXO34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.4

Table S7384. Gene #755: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FBXO34 MUTATED	0	6	0	1	0
FBXO34 WILD-TYPE	79	120	27	42	12

'FBXO34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.37

Table S7385. Gene #755: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FBXO34 MUTATED	0	3	2	2
FBXO34 WILD-TYPE	71	73	32	61

'FBXO34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 0.99

Table S7386. Gene #755: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FBXO34 MUTATED	0	2	1	1	1
FBXO34 WILD-TYPE	16	60	50	64	54

'FBXO34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.67

Table S7387. Gene #755: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FBXO34 MUTATED	1	2	1	1
FBXO34 WILD-TYPE	97	42	49	56

'FBXO34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00262 (Fisher's exact test), Q value = 0.032

Table S7388. Gene #755: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FBXO34 MUTATED	6	0	0	1	0
FBXO34 WILD-TYPE	56	59	40	36	59

Figure S2418. Get High-res Image Gene #755: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FBXO34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.65

Table S7389. Gene #755: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FBXO34 MUTATED	4	0	3
FBXO34 WILD-TYPE	102	54	94

'FBXO34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.18

Table S7390. Gene #755: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FBXO34 MUTATED	6	1	0
FBXO34 WILD-TYPE	117	94	71

'FBXO34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S7391. Gene #755: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FBXO34 MUTATED	6	1	0
FBXO34 WILD-TYPE	151	62	69

'FBXO34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.3

Table S7392. Gene #755: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FBXO34 MUTATED	0	0	5	2	0	0
FBXO34 WILD-TYPE	33	19	54	37	16	45

'FBXO34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.43

Table S7393. Gene #755: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FBXO34 MUTATED	2	0	3	1	1	0
FBXO34 WILD-TYPE	45	39	32	31	22	35

'CAB39L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 0.16

Table S7394. Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CAB39L MUTATED	0	5	2	0	1
CAB39L WILD-TYPE	79	121	25	43	11

Figure S2419. Get High-res Image Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CAB39L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00374 (Fisher's exact test), Q value = 0.038

Table S7395. Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CAB39L MUTATED	0	6	0	0
CAB39L WILD-TYPE	71	70	34	63

Figure S2420. Get High-res Image Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CAB39L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.69

Table S7396. Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CAB39L MUTATED	1	2	1	1	3
CAB39L WILD-TYPE	15	60	50	64	52

'CAB39L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0165 (Fisher's exact test), Q value = 0.085

Table S7397. Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CAB39L MUTATED	2	5	0	1
CAB39L WILD-TYPE	96	39	50	56

Figure S2421. Get High-res Image Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CAB39L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.037 (Fisher's exact test), Q value = 0.13

Table S7398. Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CAB39L MUTATED	4	0	2	0	0
CAB39L WILD-TYPE	58	59	38	37	59

Figure S2422. Get High-res Image Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CAB39L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00412 (Fisher's exact test), Q value = 0.04

Table S7399. Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CAB39L MUTATED	0	0	6
CAB39L WILD-TYPE	106	54	91

Figure S2423. Get High-res Image Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CAB39L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.37

Table S7400. Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CAB39L MUTATED	6	1	1
CAB39L WILD-TYPE	117	94	70

'CAB39L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.36

Table S7401. Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CAB39L MUTATED	7	0	1
CAB39L WILD-TYPE	150	63	68

'CAB39L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.66

Table S7402. Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CAB39L MUTATED	2	0	3	1	0	0
CAB39L WILD-TYPE	31	19	56	38	16	45

'CAB39L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.47

Table S7403. Gene #756: 'CAB39L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CAB39L MUTATED	3	0	2	1	0	0
CAB39L WILD-TYPE	44	39	33	31	23	35

'VASH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.13

Table S7404. Gene #757: 'VASH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
VASH1 MUTATED	0	4	0	1	2
VASH1 WILD-TYPE	79	122	27	42	10

Figure S2424. Get High-res Image Gene #757: 'VASH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VASH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.33

Table S7405. Gene #757: 'VASH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
VASH1 MUTATED	0	4	1	1
VASH1 WILD-TYPE	71	72	33	62

'VASH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.9

Table S7406. Gene #757: 'VASH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
VASH1 MUTATED	0	1	2	1	2
VASH1 WILD-TYPE	16	61	49	64	53

'VASH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.37

Table S7407. Gene #757: 'VASH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
VASH1 MUTATED	1	3	1	1
VASH1 WILD-TYPE	97	41	49	56

'VASH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.42

Table S7408. Gene #757: 'VASH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
VASH1 MUTATED	4	1	1	1	0
VASH1 WILD-TYPE	58	58	39	36	59

'VASH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.083

Table S7409. Gene #757: 'VASH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
VASH1 MUTATED	0	1	6
VASH1 WILD-TYPE	106	53	91

Figure S2425. Get High-res Image Gene #757: 'VASH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'VASH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.19

Table S7410. Gene #757: 'VASH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
VASH1 MUTATED	6	1	0
VASH1 WILD-TYPE	117	94	71

'VASH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S7411. Gene #757: 'VASH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
VASH1 MUTATED	6	1	0
VASH1 WILD-TYPE	151	62	69

'VASH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 0.97

Table S7412. Gene #757: 'VASH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
VASH1 MUTATED	1	0	1	0	0	1
VASH1 WILD-TYPE	32	19	58	39	16	44

'VASH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 0.82

Table S7413. Gene #757: 'VASH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
VASH1 MUTATED	0	1	1	1	0	0
VASH1 WILD-TYPE	47	38	34	31	23	35

'HECA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00615 (Fisher's exact test), Q value = 0.051

Table S7414. Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HECA MUTATED	0	11	0	0	1
HECA WILD-TYPE	79	115	27	43	11

Figure S2426. Get High-res Image Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HECA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.25

Table S7415. Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HECA MUTATED	0	5	2	3
HECA WILD-TYPE	71	71	32	60

'HECA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.37

Table S7416. Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
HECA MUTATED	1	2	3	0	3
HECA WILD-TYPE	15	60	48	65	52

'HECA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.4

Table S7417. Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
HECA MUTATED	4	3	2	0
HECA WILD-TYPE	94	41	48	57

'HECA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S7418. Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
HECA MUTATED	9	0	2	0	0
HECA WILD-TYPE	53	59	38	37	59

Figure S2427. Get High-res Image Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HECA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0385 (Fisher's exact test), Q value = 0.14

Table S7419. Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
HECA MUTATED	3	0	8
HECA WILD-TYPE	103	54	89

Figure S2428. Get High-res Image Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HECA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0039

Table S7420. Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
HECA MUTATED	12	0	0
HECA WILD-TYPE	111	95	71

Figure S2429. Get High-res Image Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HECA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00299 (Fisher's exact test), Q value = 0.034

Table S7421. Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
HECA MUTATED	12	0	0
HECA WILD-TYPE	145	63	69

Figure S2430. Get High-res Image Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HECA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.69

Table S7422. Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
HECA MUTATED	1	1	3	2	0	0
HECA WILD-TYPE	32	18	56	37	16	45

'HECA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0721 (Fisher's exact test), Q value = 0.19

Table S7423. Gene #758: 'HECA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
HECA MUTATED	2	0	3	0	2	0
HECA WILD-TYPE	45	39	32	32	21	35

'TMEM39A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.49

Table S7424. Gene #759: 'TMEM39A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TMEM39A MUTATED	0	5	1	1	0
TMEM39A WILD-TYPE	79	121	26	42	12

'TMEM39A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 0.15

Table S7425. Gene #759: 'TMEM39A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TMEM39A MUTATED	1	6	1	0
TMEM39A WILD-TYPE	70	70	33	63

Figure S2431. Get High-res Image Gene #759: 'TMEM39A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TMEM39A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 0.99

Table S7426. Gene #759: 'TMEM39A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TMEM39A MUTATED	0	2	1	1	1
TMEM39A WILD-TYPE	16	60	50	64	54

'TMEM39A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00996 (Fisher's exact test), Q value = 0.066

Table S7427. Gene #759: 'TMEM39A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TMEM39A MUTATED	0	3	2	0
TMEM39A WILD-TYPE	98	41	48	57

Figure S2432. Get High-res Image Gene #759: 'TMEM39A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TMEM39A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0484 (Fisher's exact test), Q value = 0.15

Table S7428. Gene #759: 'TMEM39A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TMEM39A MUTATED	4	0	0	3	1
TMEM39A WILD-TYPE	58	59	40	34	58

Figure S2433. Get High-res Image Gene #759: 'TMEM39A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TMEM39A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0775 (Fisher's exact test), Q value = 0.2

Table S7429. Gene #759: 'TMEM39A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TMEM39A MUTATED	2	0	6
TMEM39A WILD-TYPE	104	54	91

'TMEM39A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.13

Table S7430. Gene #759: 'TMEM39A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TMEM39A MUTATED	7	1	0
TMEM39A WILD-TYPE	116	94	71

Figure S2434. Get High-res Image Gene #759: 'TMEM39A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TMEM39A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S7431. Gene #759: 'TMEM39A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TMEM39A MUTATED	7	1	0
TMEM39A WILD-TYPE	150	62	69

'TMEM39A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.73

Table S7432. Gene #759: 'TMEM39A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TMEM39A MUTATED	1	2	2	1	0	1
TMEM39A WILD-TYPE	32	17	57	38	16	44

'TMEM39A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.26

Table S7433. Gene #759: 'TMEM39A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TMEM39A MUTATED	4	0	2	0	1	0
TMEM39A WILD-TYPE	43	39	33	32	22	35

'BRMS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.68

Table S7434. Gene #760: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BRMS1 MUTATED	1	5	0	0	0
BRMS1 WILD-TYPE	78	121	27	43	12

'BRMS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.56

Table S7435. Gene #760: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BRMS1 MUTATED	1	3	1	0
BRMS1 WILD-TYPE	70	73	33	63

'BRMS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 0.89

Table S7436. Gene #760: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BRMS1 MUTATED	0	0	1	1	1
BRMS1 WILD-TYPE	16	62	50	64	54

'BRMS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.45

Table S7437. Gene #760: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BRMS1 MUTATED	0	1	1	1
BRMS1 WILD-TYPE	98	43	49	56

'BRMS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 0.79

Table S7438. Gene #760: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BRMS1 MUTATED	3	1	0	1	1
BRMS1 WILD-TYPE	59	58	40	36	58

'BRMS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.46

Table S7439. Gene #760: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BRMS1 MUTATED	1	1	4
BRMS1 WILD-TYPE	105	53	93

'BRMS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.68

Table S7440. Gene #760: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BRMS1 MUTATED	4	1	1
BRMS1 WILD-TYPE	119	94	70

'BRMS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7441. Gene #760: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BRMS1 MUTATED	4	1	1
BRMS1 WILD-TYPE	153	62	68

'BRMS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0894 (Fisher's exact test), Q value = 0.22

Table S7442. Gene #760: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BRMS1 MUTATED	0	2	1	1	1	0
BRMS1 WILD-TYPE	33	17	58	38	15	45

'BRMS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.79

Table S7443. Gene #760: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BRMS1 MUTATED	2	0	1	0	1	1
BRMS1 WILD-TYPE	45	39	34	32	22	34

'SPTLC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.86

Table S7444. Gene #761: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SPTLC3 MUTATED	4	5	1	1	1
SPTLC3 WILD-TYPE	75	121	26	42	11

'SPTLC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 0.96

Table S7445. Gene #761: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SPTLC3 MUTATED	4	4	1	2
SPTLC3 WILD-TYPE	67	72	33	61

'SPTLC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.32

Table S7446. Gene #761: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SPTLC3 MUTATED	1	6	2	1	1
SPTLC3 WILD-TYPE	15	56	49	64	54

'SPTLC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.19

Table S7447. Gene #761: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SPTLC3 MUTATED	4	2	5	0
SPTLC3 WILD-TYPE	94	42	45	57

'SPTLC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.6

Table S7448. Gene #761: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SPTLC3 MUTATED	3	1	1	0	4
SPTLC3 WILD-TYPE	59	58	39	37	55

'SPTLC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 0.18

Table S7449. Gene #761: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SPTLC3 MUTATED	7	0	2
SPTLC3 WILD-TYPE	99	54	95

'SPTLC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S7450. Gene #761: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SPTLC3 MUTATED	7	1	4
SPTLC3 WILD-TYPE	116	94	67

'SPTLC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 0.8

Table S7451. Gene #761: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SPTLC3 MUTATED	6	2	4
SPTLC3 WILD-TYPE	151	61	65

'SPTLC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.23

Table S7452. Gene #761: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SPTLC3 MUTATED	3	0	4	0	1	0
SPTLC3 WILD-TYPE	30	19	55	39	15	45

'SPTLC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.35

Table S7453. Gene #761: 'SPTLC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SPTLC3 MUTATED	1	0	3	1	0	3
SPTLC3 WILD-TYPE	46	39	32	31	23	32

'CLCA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.18

Table S7454. Gene #762: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CLCA4 MUTATED	0	9	0	1	0
CLCA4 WILD-TYPE	79	117	27	42	12

'CLCA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.072 (Fisher's exact test), Q value = 0.19

Table S7455. Gene #762: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CLCA4 MUTATED	0	4	3	2
CLCA4 WILD-TYPE	71	72	31	61

'CLCA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.6

Table S7456. Gene #762: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
CLCA4 MUTATED	0	5	2	1	2
CLCA4 WILD-TYPE	16	57	49	64	53

'CLCA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00399 (Fisher's exact test), Q value = 0.04

Table S7457. Gene #762: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
CLCA4 MUTATED	0	5	2	3
CLCA4 WILD-TYPE	98	39	48	54

Figure S2435. Get High-res Image Gene #762: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CLCA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.011

Table S7458. Gene #762: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
CLCA4 MUTATED	9	1	0	1	0
CLCA4 WILD-TYPE	53	58	40	36	59

Figure S2436. Get High-res Image Gene #762: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CLCA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.61

Table S7459. Gene #762: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
CLCA4 MUTATED	4	1	6
CLCA4 WILD-TYPE	102	53	91

'CLCA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.13

Table S7460. Gene #762: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
CLCA4 MUTATED	9	1	1
CLCA4 WILD-TYPE	114	94	70

Figure S2437. Get High-res Image Gene #762: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CLCA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.43

Table S7461. Gene #762: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
CLCA4 MUTATED	9	1	1
CLCA4 WILD-TYPE	148	62	68

'CLCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.49

Table S7462. Gene #762: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
CLCA4 MUTATED	1	1	5	2	0	0
CLCA4 WILD-TYPE	32	18	54	37	16	45

'CLCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0816 (Fisher's exact test), Q value = 0.21

Table S7463. Gene #762: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
CLCA4 MUTATED	2	0	4	1	2	0
CLCA4 WILD-TYPE	45	39	31	31	21	35

'DENND1C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.69

Table S7464. Gene #763: 'DENND1C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DENND1C MUTATED	1	5	0	0	0
DENND1C WILD-TYPE	78	121	27	43	12

'DENND1C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.63

Table S7465. Gene #763: 'DENND1C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DENND1C MUTATED	1	4	1	1
DENND1C WILD-TYPE	70	72	33	62

'DENND1C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.37

Table S7466. Gene #763: 'DENND1C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DENND1C MUTATED	0	3	1	0	0
DENND1C WILD-TYPE	16	59	50	65	55

'DENND1C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00938 (Fisher's exact test), Q value = 0.064

Table S7467. Gene #763: 'DENND1C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DENND1C MUTATED	0	3	1	0
DENND1C WILD-TYPE	98	41	49	57

Figure S2438. Get High-res Image Gene #763: 'DENND1C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DENND1C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 0.13

Table S7468. Gene #763: 'DENND1C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DENND1C MUTATED	4	0	0	1	0
DENND1C WILD-TYPE	58	59	40	36	59

Figure S2439. Get High-res Image Gene #763: 'DENND1C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DENND1C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.38

Table S7469. Gene #763: 'DENND1C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DENND1C MUTATED	1	0	4
DENND1C WILD-TYPE	105	54	93

'DENND1C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0535 (Fisher's exact test), Q value = 0.16

Table S7470. Gene #763: 'DENND1C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DENND1C MUTATED	6	0	1
DENND1C WILD-TYPE	117	95	70

'DENND1C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 0.84

Table S7471. Gene #763: 'DENND1C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DENND1C MUTATED	5	1	1
DENND1C WILD-TYPE	152	62	68

'DENND1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.66

Table S7472. Gene #763: 'DENND1C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DENND1C MUTATED	2	0	3	1	0	0
DENND1C WILD-TYPE	31	19	56	38	16	45

'DENND1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.36

Table S7473. Gene #763: 'DENND1C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DENND1C MUTATED	3	0	2	0	1	0
DENND1C WILD-TYPE	44	39	33	32	22	35

'OR4M2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 0.17

Table S7474. Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OR4M2 MUTATED	0	8	2	1	1
OR4M2 WILD-TYPE	79	118	25	42	11

'OR4M2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.075

Table S7475. Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OR4M2 MUTATED	0	8	1	2
OR4M2 WILD-TYPE	71	68	33	61

Figure S2440. Get High-res Image Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OR4M2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 0.14

Table S7476. Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
OR4M2 MUTATED	1	6	1	0	4
OR4M2 WILD-TYPE	15	56	50	65	51

Figure S2441. Get High-res Image Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OR4M2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0193 (Fisher's exact test), Q value = 0.093

Table S7477. Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
OR4M2 MUTATED	3	5	4	0
OR4M2 WILD-TYPE	95	39	46	57

Figure S2442. Get High-res Image Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OR4M2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.009

Table S7478. Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
OR4M2 MUTATED	7	0	0	4	0
OR4M2 WILD-TYPE	55	59	40	33	59

Figure S2443. Get High-res Image Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OR4M2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.39

Table S7479. Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
OR4M2 MUTATED	3	1	7
OR4M2 WILD-TYPE	103	53	90

'OR4M2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0955 (Fisher's exact test), Q value = 0.23

Table S7480. Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
OR4M2 MUTATED	9	2	1
OR4M2 WILD-TYPE	114	93	70

'OR4M2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 0.1

Table S7481. Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
OR4M2 MUTATED	11	1	0
OR4M2 WILD-TYPE	146	62	69

Figure S2444. Get High-res Image Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OR4M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.3

Table S7482. Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
OR4M2 MUTATED	3	1	2	4	0	0
OR4M2 WILD-TYPE	30	18	57	35	16	45

'OR4M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.2

Table S7483. Gene #764: 'OR4M2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
OR4M2 MUTATED	4	0	2	1	3	0
OR4M2 WILD-TYPE	43	39	33	31	20	35

'USP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.42

Table S7484. Gene #765: 'USP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
USP13 MUTATED	1	6	2	1	1
USP13 WILD-TYPE	78	120	25	42	11

'USP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0466 (Fisher's exact test), Q value = 0.15

Table S7485. Gene #765: 'USP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
USP13 MUTATED	2	1	3	0
USP13 WILD-TYPE	69	75	31	63

Figure S2445. Get High-res Image Gene #765: 'USP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'USP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.28

Table S7486. Gene #765: 'USP13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
USP13 MUTATED	0	5	3	0	2
USP13 WILD-TYPE	16	57	48	65	53

'USP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.38

Table S7487. Gene #765: 'USP13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
USP13 MUTATED	5	3	2	0
USP13 WILD-TYPE	93	41	48	57

'USP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.044 (Fisher's exact test), Q value = 0.15

Table S7488. Gene #765: 'USP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
USP13 MUTATED	6	0	1	1	1
USP13 WILD-TYPE	56	59	39	36	58

Figure S2446. Get High-res Image Gene #765: 'USP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'USP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0425 (Fisher's exact test), Q value = 0.15

Table S7489. Gene #765: 'USP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
USP13 MUTATED	2	0	7
USP13 WILD-TYPE	104	54	90

Figure S2447. Get High-res Image Gene #765: 'USP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'USP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.26

Table S7490. Gene #765: 'USP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
USP13 MUTATED	8	1	2
USP13 WILD-TYPE	115	94	69

'USP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.35

Table S7491. Gene #765: 'USP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
USP13 MUTATED	8	0	3
USP13 WILD-TYPE	149	63	66

'USP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.26

Table S7492. Gene #765: 'USP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
USP13 MUTATED	1	0	1	4	0	0
USP13 WILD-TYPE	32	19	58	35	16	45

'USP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.066

Table S7493. Gene #765: 'USP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
USP13 MUTATED	0	0	1	0	3	2
USP13 WILD-TYPE	47	39	34	32	20	33

Figure S2448. Get High-res Image Gene #765: 'USP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WNT9A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.43

Table S7494. Gene #766: 'WNT9A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WNT9A MUTATED	1	5	2	0	0
WNT9A WILD-TYPE	78	121	25	43	12

'WNT9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.28

Table S7495. Gene #766: 'WNT9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WNT9A MUTATED	1	4	2	0
WNT9A WILD-TYPE	70	72	32	63

'WNT9A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 0.9

Table S7496. Gene #766: 'WNT9A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
WNT9A MUTATED	0	1	2	1	2
WNT9A WILD-TYPE	16	61	49	64	53

'WNT9A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 0.93

Table S7497. Gene #766: 'WNT9A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
WNT9A MUTATED	2	1	2	1
WNT9A WILD-TYPE	96	43	48	56

'WNT9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.41

Table S7498. Gene #766: 'WNT9A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
WNT9A MUTATED	3	1	0	3	1
WNT9A WILD-TYPE	59	58	40	34	58

'WNT9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.56

Table S7499. Gene #766: 'WNT9A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
WNT9A MUTATED	2	1	5
WNT9A WILD-TYPE	104	53	92

'WNT9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.56

Table S7500. Gene #766: 'WNT9A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
WNT9A MUTATED	5	1	2
WNT9A WILD-TYPE	118	94	69

'WNT9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.78

Table S7501. Gene #766: 'WNT9A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
WNT9A MUTATED	6	1	1
WNT9A WILD-TYPE	151	62	68

'WNT9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.38

Table S7502. Gene #766: 'WNT9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
WNT9A MUTATED	0	2	1	1	1	1
WNT9A WILD-TYPE	33	17	58	38	15	44

'WNT9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.67

Table S7503. Gene #766: 'WNT9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
WNT9A MUTATED	3	1	0	0	1	1
WNT9A WILD-TYPE	44	38	35	32	22	34

'MAGI2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.59

Table S7504. Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAGI2 MUTATED	4	14	2	4	2
MAGI2 WILD-TYPE	75	112	25	39	10

'MAGI2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.6

Table S7505. Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAGI2 MUTATED	5	10	2	4
MAGI2 WILD-TYPE	66	66	32	59

'MAGI2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0498 (Fisher's exact test), Q value = 0.16

Table S7506. Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MAGI2 MUTATED	1	4	8	2	9
MAGI2 WILD-TYPE	15	58	43	63	46

Figure S2449. Get High-res Image Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MAGI2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.1

Table S7507. Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MAGI2 MUTATED	8	10	2	4
MAGI2 WILD-TYPE	90	34	48	53

Figure S2450. Get High-res Image Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAGI2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.089

Table S7508. Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MAGI2 MUTATED	9	0	5	3	5
MAGI2 WILD-TYPE	53	59	35	34	54

Figure S2451. Get High-res Image Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAGI2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0089 (Fisher's exact test), Q value = 0.062

Table S7509. Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MAGI2 MUTATED	9	0	13
MAGI2 WILD-TYPE	97	54	84

Figure S2452. Get High-res Image Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAGI2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00959 (Fisher's exact test), Q value = 0.065

Table S7510. Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MAGI2 MUTATED	18	3	5
MAGI2 WILD-TYPE	105	92	66

Figure S2453. Get High-res Image Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAGI2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0528 (Fisher's exact test), Q value = 0.16

Table S7511. Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MAGI2 MUTATED	20	2	4
MAGI2 WILD-TYPE	137	61	65

'MAGI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.39

Table S7512. Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MAGI2 MUTATED	5	2	4	4	0	1
MAGI2 WILD-TYPE	28	17	55	35	16	44

'MAGI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.4

Table S7513. Gene #767: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MAGI2 MUTATED	3	1	2	6	1	3
MAGI2 WILD-TYPE	44	38	33	26	22	32

'C10ORF54 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.41

Table S7514. Gene #768: 'C10ORF54 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C10ORF54 MUTATED	1	1	0	0	1
C10ORF54 WILD-TYPE	78	125	27	43	11

'C10ORF54 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.46

Table S7515. Gene #768: 'C10ORF54 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C10ORF54 MUTATED	0	1	2	0	0
C10ORF54 WILD-TYPE	16	61	49	65	55

'C10ORF54 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 0.7

Table S7516. Gene #768: 'C10ORF54 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C10ORF54 MUTATED	1	1	1	0
C10ORF54 WILD-TYPE	97	43	49	57

'C10ORF54 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 0.84

Table S7517. Gene #768: 'C10ORF54 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C10ORF54 MUTATED	1	0	0	1	1
C10ORF54 WILD-TYPE	61	59	40	36	58

'C10ORF54 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.71

Table S7518. Gene #768: 'C10ORF54 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C10ORF54 MUTATED	1	0	2
C10ORF54 WILD-TYPE	105	54	95

'C10ORF54 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7519. Gene #768: 'C10ORF54 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C10ORF54 MUTATED	1	1	1
C10ORF54 WILD-TYPE	122	94	70

'C10ORF54 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.56

Table S7520. Gene #768: 'C10ORF54 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C10ORF54 MUTATED	3	0	0
C10ORF54 WILD-TYPE	154	63	69

'SETD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0477 (Fisher's exact test), Q value = 0.15

Table S7521. Gene #769: 'SETD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SETD2 MUTATED	0	10	2	3	0
SETD2 WILD-TYPE	79	116	25	40	12

Figure S2454. Get High-res Image Gene #769: 'SETD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SETD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.18

Table S7522. Gene #769: 'SETD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SETD2 MUTATED	0	6	2	2
SETD2 WILD-TYPE	71	70	32	61

'SETD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.24

Table S7523. Gene #769: 'SETD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
SETD2 MUTATED	3	4	2	1	4
SETD2 WILD-TYPE	13	58	49	64	51

'SETD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00437 (Fisher's exact test), Q value = 0.042

Table S7524. Gene #769: 'SETD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
SETD2 MUTATED	3	8	1	2
SETD2 WILD-TYPE	95	36	49	55

Figure S2455. Get High-res Image Gene #769: 'SETD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SETD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.32

Table S7525. Gene #769: 'SETD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
SETD2 MUTATED	5	3	2	3	0
SETD2 WILD-TYPE	57	56	38	34	59

'SETD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.36

Table S7526. Gene #769: 'SETD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
SETD2 MUTATED	4	1	8
SETD2 WILD-TYPE	102	53	89

'SETD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0055

Table S7527. Gene #769: 'SETD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
SETD2 MUTATED	14	1	0
SETD2 WILD-TYPE	109	94	71

Figure S2456. Get High-res Image Gene #769: 'SETD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SETD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00441 (Fisher's exact test), Q value = 0.042

Table S7528. Gene #769: 'SETD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
SETD2 MUTATED	14	1	0
SETD2 WILD-TYPE	143	62	69

Figure S2457. Get High-res Image Gene #769: 'SETD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SETD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 0.84

Table S7529. Gene #769: 'SETD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
SETD2 MUTATED	2	0	4	1	0	1
SETD2 WILD-TYPE	31	19	55	38	16	44

'SETD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.56

Table S7530. Gene #769: 'SETD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
SETD2 MUTATED	3	1	3	1	0	0
SETD2 WILD-TYPE	44	38	32	31	23	35

'APOA1BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.71

Table S7531. Gene #770: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
APOA1BP MUTATED	1	4	1	0	0
APOA1BP WILD-TYPE	78	122	26	43	12

'APOA1BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.65

Table S7532. Gene #770: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
APOA1BP MUTATED	0	2	1	1
APOA1BP WILD-TYPE	71	74	33	62

'APOA1BP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.67

Table S7533. Gene #770: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
APOA1BP MUTATED	0	3	0	1	2
APOA1BP WILD-TYPE	16	59	51	64	53

'APOA1BP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.066

Table S7534. Gene #770: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
APOA1BP MUTATED	0	4	1	1
APOA1BP WILD-TYPE	98	40	49	56

Figure S2458. Get High-res Image Gene #770: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'APOA1BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.48

Table S7535. Gene #770: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
APOA1BP MUTATED	3	2	0	1	0
APOA1BP WILD-TYPE	59	57	40	36	59

'APOA1BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 0.83

Table S7536. Gene #770: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
APOA1BP MUTATED	2	2	2
APOA1BP WILD-TYPE	104	52	95

'APOA1BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.48

Table S7537. Gene #770: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
APOA1BP MUTATED	4	2	0
APOA1BP WILD-TYPE	119	93	71

'APOA1BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.55

Table S7538. Gene #770: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
APOA1BP MUTATED	4	2	0
APOA1BP WILD-TYPE	153	61	69

'APOA1BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 0.83

Table S7539. Gene #770: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
APOA1BP MUTATED	0	0	2	0	0	2
APOA1BP WILD-TYPE	33	19	57	39	16	43

'APOA1BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.32

Table S7540. Gene #770: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
APOA1BP MUTATED	0	2	2	0	0	0
APOA1BP WILD-TYPE	47	37	33	32	23	35

'TRPV2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.27

Table S7541. Gene #771: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TRPV2 MUTATED	0	7	2	1	0
TRPV2 WILD-TYPE	79	119	25	42	12

'TRPV2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.52

Table S7542. Gene #771: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TRPV2 MUTATED	1	4	2	1
TRPV2 WILD-TYPE	70	72	32	62

'TRPV2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0671 (Fisher's exact test), Q value = 0.19

Table S7543. Gene #771: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TRPV2 MUTATED	1	2	5	0	2
TRPV2 WILD-TYPE	15	60	46	65	53

'TRPV2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.0088

Table S7544. Gene #771: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TRPV2 MUTATED	1	7	2	0
TRPV2 WILD-TYPE	97	37	48	57

Figure S2459. Get High-res Image Gene #771: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TRPV2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.12

Table S7545. Gene #771: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TRPV2 MUTATED	4	0	2	3	0
TRPV2 WILD-TYPE	58	59	38	34	59

Figure S2460. Get High-res Image Gene #771: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TRPV2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.29

Table S7546. Gene #771: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TRPV2 MUTATED	3	0	6
TRPV2 WILD-TYPE	103	54	91

'TRPV2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0454 (Fisher's exact test), Q value = 0.15

Table S7547. Gene #771: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TRPV2 MUTATED	8	2	0
TRPV2 WILD-TYPE	115	93	71

Figure S2461. Get High-res Image Gene #771: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TRPV2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0579 (Fisher's exact test), Q value = 0.17

Table S7548. Gene #771: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TRPV2 MUTATED	9	1	0
TRPV2 WILD-TYPE	148	62	69

'TRPV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.56

Table S7549. Gene #771: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TRPV2 MUTATED	0	2	3	1	0	1
TRPV2 WILD-TYPE	33	17	56	38	16	44

'TRPV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.63

Table S7550. Gene #771: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TRPV2 MUTATED	1	1	3	1	1	0
TRPV2 WILD-TYPE	46	38	32	31	22	35

'PA2G4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.6

Table S7551. Gene #772: 'PA2G4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PA2G4 MUTATED	0	4	0	0	0
PA2G4 WILD-TYPE	79	122	27	43	12

'PA2G4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S7552. Gene #772: 'PA2G4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PA2G4 MUTATED	0	2	0	1
PA2G4 WILD-TYPE	71	74	34	62

'PA2G4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.27

Table S7553. Gene #772: 'PA2G4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PA2G4 MUTATED	1	2	1	0	0
PA2G4 WILD-TYPE	15	60	50	65	55

'PA2G4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.43

Table S7554. Gene #772: 'PA2G4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PA2G4 MUTATED	1	1	2	0
PA2G4 WILD-TYPE	97	43	48	57

'PA2G4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.45

Table S7555. Gene #772: 'PA2G4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PA2G4 MUTATED	2	0	1	0	0
PA2G4 WILD-TYPE	60	59	39	37	59

'PA2G4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.71

Table S7556. Gene #772: 'PA2G4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PA2G4 MUTATED	1	0	2
PA2G4 WILD-TYPE	105	54	95

'PA2G4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.77

Table S7557. Gene #772: 'PA2G4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PA2G4 MUTATED	2	2	0
PA2G4 WILD-TYPE	121	93	71

'PA2G4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.75

Table S7558. Gene #772: 'PA2G4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PA2G4 MUTATED	3	1	0
PA2G4 WILD-TYPE	154	62	69

'PA2G4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 0.84

Table S7559. Gene #772: 'PA2G4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PA2G4 MUTATED	0	0	2	1	0	0
PA2G4 WILD-TYPE	33	19	57	38	16	45

'PA2G4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0749 (Fisher's exact test), Q value = 0.2

Table S7560. Gene #772: 'PA2G4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PA2G4 MUTATED	0	0	2	0	1	0
PA2G4 WILD-TYPE	47	39	33	32	22	35

'EEA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.1

Table S7561. Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EEA1 MUTATED	0	11	0	1	0
EEA1 WILD-TYPE	79	115	27	42	12

Figure S2462. Get High-res Image Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EEA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00115 (Fisher's exact test), Q value = 0.02

Table S7562. Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EEA1 MUTATED	0	6	4	0
EEA1 WILD-TYPE	71	70	30	63

Figure S2463. Get High-res Image Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EEA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.18

Table S7563. Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EEA1 MUTATED	0	4	1	0	5
EEA1 WILD-TYPE	16	58	50	65	50

'EEA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0621 (Fisher's exact test), Q value = 0.18

Table S7564. Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EEA1 MUTATED	2	5	2	1
EEA1 WILD-TYPE	96	39	48	56

'EEA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0075

Table S7565. Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EEA1 MUTATED	8	0	1	0	0
EEA1 WILD-TYPE	54	59	39	37	59

Figure S2464. Get High-res Image Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EEA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.14

Table S7566. Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EEA1 MUTATED	2	0	7
EEA1 WILD-TYPE	104	54	90

Figure S2465. Get High-res Image Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EEA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.03

Table S7567. Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EEA1 MUTATED	11	1	0
EEA1 WILD-TYPE	112	94	71

Figure S2466. Get High-res Image Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EEA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 0.1

Table S7568. Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EEA1 MUTATED	11	1	0
EEA1 WILD-TYPE	146	62	69

Figure S2467. Get High-res Image Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EEA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.4

Table S7569. Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EEA1 MUTATED	3	0	3	3	0	0
EEA1 WILD-TYPE	30	19	56	36	16	45

'EEA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.3

Table S7570. Gene #773: 'EEA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EEA1 MUTATED	2	0	2	3	2	0
EEA1 WILD-TYPE	45	39	33	29	21	35

'BCKDHA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.58

Table S7571. Gene #774: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BCKDHA MUTATED	1	6	1	0	0
BCKDHA WILD-TYPE	78	120	26	43	12

'BCKDHA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.61

Table S7572. Gene #774: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BCKDHA MUTATED	1	4	0	2
BCKDHA WILD-TYPE	70	72	34	61

'BCKDHA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.44

Table S7573. Gene #774: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
BCKDHA MUTATED	0	4	2	0	2
BCKDHA WILD-TYPE	16	58	49	65	53

'BCKDHA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.64

Table S7574. Gene #774: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
BCKDHA MUTATED	2	2	3	1
BCKDHA WILD-TYPE	96	42	47	56

'BCKDHA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.73

Table S7575. Gene #774: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
BCKDHA MUTATED	2	1	0	2	2
BCKDHA WILD-TYPE	60	58	40	35	57

'BCKDHA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.71

Table S7576. Gene #774: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
BCKDHA MUTATED	2	1	4
BCKDHA WILD-TYPE	104	53	93

'BCKDHA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.4

Table S7577. Gene #774: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
BCKDHA MUTATED	6	1	2
BCKDHA WILD-TYPE	117	94	69

'BCKDHA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.42

Table S7578. Gene #774: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
BCKDHA MUTATED	6	0	3
BCKDHA WILD-TYPE	151	63	66

'BCKDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.37

Table S7579. Gene #774: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
BCKDHA MUTATED	2	1	2	0	1	0
BCKDHA WILD-TYPE	31	18	57	39	15	45

'BCKDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 0.81

Table S7580. Gene #774: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
BCKDHA MUTATED	2	0	1	1	0	2
BCKDHA WILD-TYPE	45	39	34	31	23	33

'RGS12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.33

Table S7581. Gene #775: 'RGS12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RGS12 MUTATED	4	13	3	1	2
RGS12 WILD-TYPE	75	113	24	42	10

'RGS12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.26

Table S7582. Gene #775: 'RGS12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RGS12 MUTATED	6	10	1	2
RGS12 WILD-TYPE	65	66	33	61

'RGS12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.31

Table S7583. Gene #775: 'RGS12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
RGS12 MUTATED	2	6	5	1	5
RGS12 WILD-TYPE	14	56	46	64	50

'RGS12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0012

Table S7584. Gene #775: 'RGS12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
RGS12 MUTATED	4	13	1	1
RGS12 WILD-TYPE	94	31	49	56

Figure S2468. Get High-res Image Gene #775: 'RGS12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RGS12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.11

Table S7585. Gene #775: 'RGS12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
RGS12 MUTATED	11	1	2	3	4
RGS12 WILD-TYPE	51	58	38	34	55

Figure S2469. Get High-res Image Gene #775: 'RGS12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RGS12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00506 (Fisher's exact test), Q value = 0.045

Table S7586. Gene #775: 'RGS12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
RGS12 MUTATED	5	1	15
RGS12 WILD-TYPE	101	53	82

Figure S2470. Get High-res Image Gene #775: 'RGS12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RGS12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.077

Table S7587. Gene #775: 'RGS12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
RGS12 MUTATED	15	2	6
RGS12 WILD-TYPE	108	93	65

Figure S2471. Get High-res Image Gene #775: 'RGS12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RGS12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.32

Table S7588. Gene #775: 'RGS12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
RGS12 MUTATED	17	3	3
RGS12 WILD-TYPE	140	60	66

'RGS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.66

Table S7589. Gene #775: 'RGS12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
RGS12 MUTATED	2	2	5	6	2	2
RGS12 WILD-TYPE	31	17	54	33	14	43

'RGS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 0.59

Table S7590. Gene #775: 'RGS12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
RGS12 MUTATED	7	2	5	2	1	2
RGS12 WILD-TYPE	40	37	30	30	22	33

'DISP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.1

Table S7591. Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DISP2 MUTATED	0	11	0	3	0
DISP2 WILD-TYPE	79	115	27	40	12

Figure S2472. Get High-res Image Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DISP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.011

Table S7592. Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DISP2 MUTATED	1	11	2	0
DISP2 WILD-TYPE	70	65	32	63

Figure S2473. Get High-res Image Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DISP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.42

Table S7593. Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DISP2 MUTATED	0	6	2	1	2
DISP2 WILD-TYPE	16	56	49	64	53

'DISP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00308 (Fisher's exact test), Q value = 0.034

Table S7594. Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DISP2 MUTATED	0	4	5	2
DISP2 WILD-TYPE	98	40	45	55

Figure S2474. Get High-res Image Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DISP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00248 (Fisher's exact test), Q value = 0.031

Table S7595. Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DISP2 MUTATED	9	1	2	1	0
DISP2 WILD-TYPE	53	58	38	36	59

Figure S2475. Get High-res Image Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DISP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0718 (Fisher's exact test), Q value = 0.19

Table S7596. Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DISP2 MUTATED	3	1	9
DISP2 WILD-TYPE	103	53	88

'DISP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00101 (Fisher's exact test), Q value = 0.018

Table S7597. Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DISP2 MUTATED	13	2	0
DISP2 WILD-TYPE	110	93	71

Figure S2476. Get High-res Image Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DISP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00479 (Fisher's exact test), Q value = 0.044

Table S7598. Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DISP2 MUTATED	14	0	1
DISP2 WILD-TYPE	143	63	68

Figure S2477. Get High-res Image Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DISP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.29

Table S7599. Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DISP2 MUTATED	2	1	5	5	0	0
DISP2 WILD-TYPE	31	18	54	34	16	45

'DISP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0297 (Fisher's exact test), Q value = 0.12

Table S7600. Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DISP2 MUTATED	5	0	4	0	3	1
DISP2 WILD-TYPE	42	39	31	32	20	34

Figure S2478. Get High-res Image Gene #776: 'DISP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF711 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.35

Table S7601. Gene #777: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF711 MUTATED	1	9	0	3	0
ZNF711 WILD-TYPE	78	117	27	40	12

'ZNF711 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.13

Table S7602. Gene #777: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF711 MUTATED	1	6	2	0
ZNF711 WILD-TYPE	70	70	32	63

Figure S2479. Get High-res Image Gene #777: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF711 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.47

Table S7603. Gene #777: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
ZNF711 MUTATED	1	5	1	1	3
ZNF711 WILD-TYPE	15	57	50	64	52

'ZNF711 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0205 (Fisher's exact test), Q value = 0.097

Table S7604. Gene #777: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
ZNF711 MUTATED	2	6	2	1
ZNF711 WILD-TYPE	96	38	48	56

Figure S2480. Get High-res Image Gene #777: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF711 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.8

Table S7605. Gene #777: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
ZNF711 MUTATED	4	1	1	2	2
ZNF711 WILD-TYPE	58	58	39	35	57

'ZNF711 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.32

Table S7606. Gene #777: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
ZNF711 MUTATED	4	0	6
ZNF711 WILD-TYPE	102	54	91

'ZNF711 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 0.13

Table S7607. Gene #777: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
ZNF711 MUTATED	10	1	2
ZNF711 WILD-TYPE	113	94	69

Figure S2481. Get High-res Image Gene #777: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF711 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.074

Table S7608. Gene #777: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
ZNF711 MUTATED	12	1	0
ZNF711 WILD-TYPE	145	62	69

Figure S2482. Get High-res Image Gene #777: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF711 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.26

Table S7609. Gene #777: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
ZNF711 MUTATED	3	0	1	3	0	0
ZNF711 WILD-TYPE	30	19	58	36	16	45

'ZNF711 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.51

Table S7610. Gene #777: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
ZNF711 MUTATED	3	0	1	2	1	0
ZNF711 WILD-TYPE	44	39	34	30	22	35

'MAN1C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.25

Table S7611. Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAN1C1 MUTATED	0	5	2	0	0
MAN1C1 WILD-TYPE	79	121	25	43	12

'MAN1C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.081

Table S7612. Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAN1C1 MUTATED	0	5	2	0
MAN1C1 WILD-TYPE	71	71	32	63

Figure S2483. Get High-res Image Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAN1C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0806 (Fisher's exact test), Q value = 0.21

Table S7613. Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
MAN1C1 MUTATED	1	0	2	0	2
MAN1C1 WILD-TYPE	15	62	49	65	53

'MAN1C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00787 (Fisher's exact test), Q value = 0.058

Table S7614. Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
MAN1C1 MUTATED	1	4	0	0
MAN1C1 WILD-TYPE	97	40	50	57

Figure S2484. Get High-res Image Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAN1C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.1

Table S7615. Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
MAN1C1 MUTATED	4	0	1	3	0
MAN1C1 WILD-TYPE	58	59	39	34	59

Figure S2485. Get High-res Image Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAN1C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.083

Table S7616. Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
MAN1C1 MUTATED	1	0	7
MAN1C1 WILD-TYPE	105	54	90

Figure S2486. Get High-res Image Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAN1C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00242 (Fisher's exact test), Q value = 0.031

Table S7617. Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
MAN1C1 MUTATED	8	0	0
MAN1C1 WILD-TYPE	115	95	71

Figure S2487. Get High-res Image Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAN1C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0443 (Fisher's exact test), Q value = 0.15

Table S7618. Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
MAN1C1 MUTATED	8	0	0
MAN1C1 WILD-TYPE	149	63	69

Figure S2488. Get High-res Image Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAN1C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.47

Table S7619. Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
MAN1C1 MUTATED	1	2	3	1	0	0
MAN1C1 WILD-TYPE	32	17	56	38	16	45

'MAN1C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.25

Table S7620. Gene #778: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
MAN1C1 MUTATED	4	0	2	0	1	0
MAN1C1 WILD-TYPE	43	39	33	32	22	35

'PHKG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.083

Table S7621. Gene #779: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PHKG2 MUTATED	0	10	1	0	1
PHKG2 WILD-TYPE	79	116	26	43	11

Figure S2489. Get High-res Image Gene #779: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PHKG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.014

Table S7622. Gene #779: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PHKG2 MUTATED	0	9	0	1
PHKG2 WILD-TYPE	71	67	34	62

Figure S2490. Get High-res Image Gene #779: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHKG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.36

Table S7623. Gene #779: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PHKG2 MUTATED	0	3	2	0	4
PHKG2 WILD-TYPE	16	59	49	65	51

'PHKG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00454 (Fisher's exact test), Q value = 0.042

Table S7624. Gene #779: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PHKG2 MUTATED	1	6	1	1
PHKG2 WILD-TYPE	97	38	49	56

Figure S2491. Get High-res Image Gene #779: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PHKG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.31

Table S7625. Gene #779: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PHKG2 MUTATED	4	2	1	3	0
PHKG2 WILD-TYPE	58	57	39	34	59

'PHKG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00508 (Fisher's exact test), Q value = 0.045

Table S7626. Gene #779: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PHKG2 MUTATED	0	2	8
PHKG2 WILD-TYPE	106	52	89

Figure S2492. Get High-res Image Gene #779: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PHKG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.23

Table S7627. Gene #779: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PHKG2 MUTATED	9	2	1
PHKG2 WILD-TYPE	114	93	70

'PHKG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0611 (Fisher's exact test), Q value = 0.18

Table S7628. Gene #779: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PHKG2 MUTATED	10	2	0
PHKG2 WILD-TYPE	147	61	69

'PHKG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7629. Gene #779: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PHKG2 MUTATED	1	1	3	2	0	2
PHKG2 WILD-TYPE	32	18	56	37	16	43

'PHKG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.27

Table S7630. Gene #779: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PHKG2 MUTATED	5	2	2	0	0	0
PHKG2 WILD-TYPE	42	37	33	32	23	35

'PCCA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.39

Table S7631. Gene #780: 'PCCA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PCCA MUTATED	0	6	1	1	0
PCCA WILD-TYPE	79	120	26	42	12

'PCCA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.16

Table S7632. Gene #780: 'PCCA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PCCA MUTATED	0	5	0	1
PCCA WILD-TYPE	71	71	34	62

'PCCA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0716 (Fisher's exact test), Q value = 0.19

Table S7633. Gene #780: 'PCCA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PCCA MUTATED	2	3	2	0	1
PCCA WILD-TYPE	14	59	49	65	54

'PCCA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.36

Table S7634. Gene #780: 'PCCA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PCCA MUTATED	3	3	2	0
PCCA WILD-TYPE	95	41	48	57

'PCCA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.18

Table S7635. Gene #780: 'PCCA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PCCA MUTATED	4	0	1	1	0
PCCA WILD-TYPE	58	59	39	36	59

'PCCA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.24

Table S7636. Gene #780: 'PCCA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PCCA MUTATED	1	0	5
PCCA WILD-TYPE	105	54	92

'PCCA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00288 (Fisher's exact test), Q value = 0.033

Table S7637. Gene #780: 'PCCA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PCCA MUTATED	8	0	0
PCCA WILD-TYPE	115	95	71

Figure S2493. Get High-res Image Gene #780: 'PCCA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PCCA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.15

Table S7638. Gene #780: 'PCCA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PCCA MUTATED	8	0	0
PCCA WILD-TYPE	149	63	69

Figure S2494. Get High-res Image Gene #780: 'PCCA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PCCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.39

Table S7639. Gene #780: 'PCCA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PCCA MUTATED	1	1	4	0	0	0
PCCA WILD-TYPE	32	18	55	39	16	45

'PCCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.026 (Fisher's exact test), Q value = 0.11

Table S7640. Gene #780: 'PCCA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PCCA MUTATED	2	0	4	0	0	0
PCCA WILD-TYPE	45	39	31	32	23	35

Figure S2495. Get High-res Image Gene #780: 'PCCA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KDM3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.34

Table S7641. Gene #781: 'KDM3B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KDM3B MUTATED	2	12	1	1	1
KDM3B WILD-TYPE	77	114	26	42	11

'KDM3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 0.23

Table S7642. Gene #781: 'KDM3B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KDM3B MUTATED	1	8	1	4
KDM3B WILD-TYPE	70	68	33	59

'KDM3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0586 (Fisher's exact test), Q value = 0.17

Table S7643. Gene #781: 'KDM3B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
KDM3B MUTATED	3	5	5	1	2
KDM3B WILD-TYPE	13	57	46	64	53

'KDM3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00856 (Fisher's exact test), Q value = 0.062

Table S7644. Gene #781: 'KDM3B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
KDM3B MUTATED	4	8	3	1
KDM3B WILD-TYPE	94	36	47	56

Figure S2496. Get High-res Image Gene #781: 'KDM3B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KDM3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00209 (Fisher's exact test), Q value = 0.028

Table S7645. Gene #781: 'KDM3B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
KDM3B MUTATED	10	2	0	1	1
KDM3B WILD-TYPE	52	57	40	36	58

Figure S2497. Get High-res Image Gene #781: 'KDM3B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KDM3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.3

Table S7646. Gene #781: 'KDM3B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
KDM3B MUTATED	3	2	9
KDM3B WILD-TYPE	103	52	88

'KDM3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.18

Table S7647. Gene #781: 'KDM3B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
KDM3B MUTATED	12	3	2
KDM3B WILD-TYPE	111	92	69

'KDM3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.33

Table S7648. Gene #781: 'KDM3B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
KDM3B MUTATED	12	4	1
KDM3B WILD-TYPE	145	59	68

'KDM3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S7649. Gene #781: 'KDM3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
KDM3B MUTATED	2	1	6	2	0	1
KDM3B WILD-TYPE	31	18	53	37	16	44

'KDM3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.38

Table S7650. Gene #781: 'KDM3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
KDM3B MUTATED	2	2	5	2	1	0
KDM3B WILD-TYPE	45	37	30	30	22	35

'FOXJ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.44

Table S7651. Gene #782: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FOXJ1 MUTATED	0	5	0	0	0
FOXJ1 WILD-TYPE	79	121	27	43	12

'FOXJ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 0.23

Table S7652. Gene #782: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FOXJ1 MUTATED	0	3	1	0
FOXJ1 WILD-TYPE	71	73	33	63

'FOXJ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 0.83

Table S7653. Gene #782: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
FOXJ1 MUTATED	0	1	1	0	1
FOXJ1 WILD-TYPE	16	61	50	65	54

'FOXJ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.15

Table S7654. Gene #782: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
FOXJ1 MUTATED	0	2	1	0
FOXJ1 WILD-TYPE	98	42	49	57

Figure S2498. Get High-res Image Gene #782: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FOXJ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.16

Table S7655. Gene #782: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
FOXJ1 MUTATED	3	0	0	2	0
FOXJ1 WILD-TYPE	59	59	40	35	59

'FOXJ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.081

Table S7656. Gene #782: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
FOXJ1 MUTATED	0	0	5
FOXJ1 WILD-TYPE	106	54	92

Figure S2499. Get High-res Image Gene #782: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FOXJ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.12

Table S7657. Gene #782: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
FOXJ1 MUTATED	5	0	0
FOXJ1 WILD-TYPE	118	95	71

Figure S2500. Get High-res Image Gene #782: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FOXJ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.4

Table S7658. Gene #782: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
FOXJ1 MUTATED	5	0	0
FOXJ1 WILD-TYPE	152	63	69

'FOXJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.68

Table S7659. Gene #782: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
FOXJ1 MUTATED	0	0	2	2	0	0
FOXJ1 WILD-TYPE	33	19	57	37	16	45

'FOXJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.26

Table S7660. Gene #782: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
FOXJ1 MUTATED	3	0	0	0	1	0
FOXJ1 WILD-TYPE	44	39	35	32	22	35

'GIPC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.44

Table S7661. Gene #783: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GIPC3 MUTATED	0	5	0	0	0
GIPC3 WILD-TYPE	79	121	27	43	12

'GIPC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.33

Table S7662. Gene #783: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GIPC3 MUTATED	0	4	1	1
GIPC3 WILD-TYPE	71	72	33	62

'GIPC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.085 (Fisher's exact test), Q value = 0.21

Table S7663. Gene #783: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
GIPC3 MUTATED	0	1	3	0	0
GIPC3 WILD-TYPE	16	61	48	65	55

'GIPC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 0.95

Table S7664. Gene #783: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
GIPC3 MUTATED	1	1	1	1
GIPC3 WILD-TYPE	97	43	49	56

'GIPC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.48

Table S7665. Gene #783: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
GIPC3 MUTATED	3	2	0	1	0
GIPC3 WILD-TYPE	59	57	40	36	59

'GIPC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.52

Table S7666. Gene #783: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
GIPC3 MUTATED	1	2	3
GIPC3 WILD-TYPE	105	52	94

'GIPC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.69

Table S7667. Gene #783: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
GIPC3 MUTATED	4	1	1
GIPC3 WILD-TYPE	119	94	70

'GIPC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 0.81

Table S7668. Gene #783: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
GIPC3 MUTATED	3	2	1
GIPC3 WILD-TYPE	154	61	68

'GIPC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.6

Table S7669. Gene #783: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
GIPC3 MUTATED	1	2	1	1	0	1
GIPC3 WILD-TYPE	32	17	58	38	16	44

'GIPC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 0.84

Table S7670. Gene #783: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
GIPC3 MUTATED	1	1	1	2	1	0
GIPC3 WILD-TYPE	46	38	34	30	22	35

'EML3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.28

Table S7671. Gene #784: 'EML3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EML3 MUTATED	0	6	1	2	1
EML3 WILD-TYPE	79	120	26	41	11

'EML3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.46

Table S7672. Gene #784: 'EML3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EML3 MUTATED	2	4	3	1
EML3 WILD-TYPE	69	72	31	62

'EML3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.34

Table S7673. Gene #784: 'EML3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
EML3 MUTATED	1	2	3	0	1
EML3 WILD-TYPE	15	60	48	65	54

'EML3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.58

Table S7674. Gene #784: 'EML3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
EML3 MUTATED	2	3	1	1
EML3 WILD-TYPE	96	41	49	56

'EML3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.086

Table S7675. Gene #784: 'EML3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
EML3 MUTATED	5	0	2	3	0
EML3 WILD-TYPE	57	59	38	34	59

Figure S2501. Get High-res Image Gene #784: 'EML3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EML3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.74

Table S7676. Gene #784: 'EML3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
EML3 MUTATED	4	1	5
EML3 WILD-TYPE	102	53	92

'EML3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.067

Table S7677. Gene #784: 'EML3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
EML3 MUTATED	9	1	0
EML3 WILD-TYPE	114	94	71

Figure S2502. Get High-res Image Gene #784: 'EML3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EML3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0764 (Fisher's exact test), Q value = 0.2

Table S7678. Gene #784: 'EML3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
EML3 MUTATED	9	0	1
EML3 WILD-TYPE	148	63	68

'EML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.58

Table S7679. Gene #784: 'EML3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
EML3 MUTATED	1	1	3	3	0	0
EML3 WILD-TYPE	32	18	56	36	16	45

'EML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.25

Table S7680. Gene #784: 'EML3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
EML3 MUTATED	2	0	2	0	3	1
EML3 WILD-TYPE	45	39	33	32	20	34

'DHX29 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.3

Table S7681. Gene #785: 'DHX29 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DHX29 MUTATED	1	6	2	0	1
DHX29 WILD-TYPE	78	120	25	43	11

'DHX29 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.088

Table S7682. Gene #785: 'DHX29 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DHX29 MUTATED	0	6	0	1
DHX29 WILD-TYPE	71	70	34	62

Figure S2503. Get High-res Image Gene #785: 'DHX29 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DHX29 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.083

Table S7683. Gene #785: 'DHX29 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
DHX29 MUTATED	2	4	0	0	3
DHX29 WILD-TYPE	14	58	51	65	52

Figure S2504. Get High-res Image Gene #785: 'DHX29 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DHX29 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.27

Table S7684. Gene #785: 'DHX29 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
DHX29 MUTATED	3	2	4	0
DHX29 WILD-TYPE	95	42	46	57

'DHX29 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.67

Table S7685. Gene #785: 'DHX29 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
DHX29 MUTATED	4	1	1	2	1
DHX29 WILD-TYPE	58	58	39	35	58

'DHX29 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.45

Table S7686. Gene #785: 'DHX29 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
DHX29 MUTATED	4	0	5
DHX29 WILD-TYPE	102	54	92

'DHX29 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00718 (Fisher's exact test), Q value = 0.055

Table S7687. Gene #785: 'DHX29 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
DHX29 MUTATED	9	0	1
DHX29 WILD-TYPE	114	95	70

Figure S2505. Get High-res Image Gene #785: 'DHX29 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DHX29 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0755 (Fisher's exact test), Q value = 0.2

Table S7688. Gene #785: 'DHX29 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
DHX29 MUTATED	9	0	1
DHX29 WILD-TYPE	148	63	68

'DHX29 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.26

Table S7689. Gene #785: 'DHX29 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
DHX29 MUTATED	2	2	3	0	0	0
DHX29 WILD-TYPE	31	17	56	39	16	45

'DHX29 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.35

Table S7690. Gene #785: 'DHX29 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
DHX29 MUTATED	4	0	2	0	0	1
DHX29 WILD-TYPE	43	39	33	32	23	34

'TH1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 0.19

Table S7691. Gene #786: 'TH1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TH1L MUTATED	1	10	0	0	0
TH1L WILD-TYPE	78	116	27	43	12

'TH1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.3

Table S7692. Gene #786: 'TH1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TH1L MUTATED	0	4	2	3
TH1L WILD-TYPE	71	72	32	60

'TH1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.67

Table S7693. Gene #786: 'TH1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
TH1L MUTATED	1	3	1	1	3
TH1L WILD-TYPE	15	59	50	64	52

'TH1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0381 (Fisher's exact test), Q value = 0.14

Table S7694. Gene #786: 'TH1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
TH1L MUTATED	2	4	3	0
TH1L WILD-TYPE	96	40	47	57

Figure S2506. Get High-res Image Gene #786: 'TH1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TH1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0046

Table S7695. Gene #786: 'TH1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
TH1L MUTATED	9	0	0	1	0
TH1L WILD-TYPE	53	59	40	36	59

Figure S2507. Get High-res Image Gene #786: 'TH1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TH1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.4

Table S7696. Gene #786: 'TH1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
TH1L MUTATED	5	0	5
TH1L WILD-TYPE	101	54	92

'TH1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00906 (Fisher's exact test), Q value = 0.063

Table S7697. Gene #786: 'TH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
TH1L MUTATED	9	0	2
TH1L WILD-TYPE	114	95	69

Figure S2508. Get High-res Image Gene #786: 'TH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TH1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0396 (Fisher's exact test), Q value = 0.14

Table S7698. Gene #786: 'TH1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
TH1L MUTATED	10	1	0
TH1L WILD-TYPE	147	62	69

Figure S2509. Get High-res Image Gene #786: 'TH1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.6

Table S7699. Gene #786: 'TH1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
TH1L MUTATED	1	1	4	1	0	0
TH1L WILD-TYPE	32	18	55	38	16	45

'TH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0738 (Fisher's exact test), Q value = 0.2

Table S7700. Gene #786: 'TH1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
TH1L MUTATED	1	0	4	1	1	0
TH1L WILD-TYPE	46	39	31	31	22	35

'PDE1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.52

Table S7701. Gene #787: 'PDE1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PDE1B MUTATED	2	1	1	2	0
PDE1B WILD-TYPE	77	125	26	41	12

'PDE1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.51

Table S7702. Gene #787: 'PDE1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PDE1B MUTATED	0	3	1	2
PDE1B WILD-TYPE	71	73	33	61

'PDE1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.57

Table S7703. Gene #787: 'PDE1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
PDE1B MUTATED	0	3	1	0	2
PDE1B WILD-TYPE	16	59	50	65	53

'PDE1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0198 (Fisher's exact test), Q value = 0.095

Table S7704. Gene #787: 'PDE1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
PDE1B MUTATED	2	4	0	0
PDE1B WILD-TYPE	96	40	50	57

Figure S2510. Get High-res Image Gene #787: 'PDE1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PDE1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.48

Table S7705. Gene #787: 'PDE1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
PDE1B MUTATED	3	0	0	1	2
PDE1B WILD-TYPE	59	59	40	36	57

'PDE1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 0.75

Table S7706. Gene #787: 'PDE1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
PDE1B MUTATED	3	0	3
PDE1B WILD-TYPE	103	54	94

'PDE1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.48

Table S7707. Gene #787: 'PDE1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
PDE1B MUTATED	4	2	0
PDE1B WILD-TYPE	119	93	71

'PDE1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7708. Gene #787: 'PDE1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
PDE1B MUTATED	4	1	1
PDE1B WILD-TYPE	153	62	68

'PDE1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.59

Table S7709. Gene #787: 'PDE1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
PDE1B MUTATED	0	1	2	2	0	0
PDE1B WILD-TYPE	33	18	57	37	16	45

'PDE1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 0.92

Table S7710. Gene #787: 'PDE1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
PDE1B MUTATED	2	0	1	1	0	1
PDE1B WILD-TYPE	45	39	34	31	23	34

'C14ORF102 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.26

Table S7711. Gene #788: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C14ORF102 MUTATED	2	9	3	0	0
C14ORF102 WILD-TYPE	77	117	24	43	12

'C14ORF102 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.3

Table S7712. Gene #788: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C14ORF102 MUTATED	1	6	0	2
C14ORF102 WILD-TYPE	70	70	34	61

'C14ORF102 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.6

Table S7713. Gene #788: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	16	62	51	65	55
C14ORF102 MUTATED	1	4	2	1	4
C14ORF102 WILD-TYPE	15	58	49	64	51

'C14ORF102 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.26

Table S7714. Gene #788: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	98	44	50	57
C14ORF102 MUTATED	3	5	3	1
C14ORF102 WILD-TYPE	95	39	47	56

'C14ORF102 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.32

Table S7715. Gene #788: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	62	59	40	37	59
C14ORF102 MUTATED	3	1	1	5	3
C14ORF102 WILD-TYPE	59	58	39	32	56

'C14ORF102 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0717 (Fisher's exact test), Q value = 0.19

Table S7716. Gene #788: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	106	54	97
C14ORF102 MUTATED	3	1	9
C14ORF102 WILD-TYPE	103	53	88

'C14ORF102 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 0.23

Table S7717. Gene #788: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	123	95	71
C14ORF102 MUTATED	10	3	1
C14ORF102 WILD-TYPE	113	92	70

'C14ORF102 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0731 (Fisher's exact test), Q value = 0.19

Table S7718. Gene #788: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	157	63	69
C14ORF102 MUTATED	11	0	3
C14ORF102 WILD-TYPE	146	63	66

'C14ORF102 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.41

Table S7719. Gene #788: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	33	19	59	39	16	45
C14ORF102 MUTATED	1	1	3	2	2	0
C14ORF102 WILD-TYPE	32	18	56	37	14	45

'C14ORF102 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.44

Table S7720. Gene #788: 'C14ORF102 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	47	39	35	32	23	35
C14ORF102 MUTATED	4	0	2	0	1	2
C14ORF102 WILD-TYPE	43	39	33	32	22	33

Methods & Data

Input

Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline
Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STAD-TP/20214823/transformed.cor.cli.txt
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STAD-TP/20140953/STAD-TP.transferedmergedcluster.txt
Number of patients = 289
Number of significantly mutated genes = 788
Number of Molecular subtypes = 10
Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References

[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)

[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)

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