[1] "ofn"        "-oTBRCA-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/BRCA-TP/22506573/BRCA-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BRCA-TP/22824023/transformed.cor.cli.txt"

nPatients in clinical file=1097, in cluster file=978, common to both=977
[1]  79 977
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
             316              661 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
             316              661 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           296            681 
  TP53 MUTATED TP53 WILD-TYPE 
           296            681 
[1] "GATA3 MUTATION ANALYSIS"
[1] 3
  GATA3 MUTATED GATA3 WILD-TYPE 
             97             880 
  GATA3 MUTATED GATA3 WILD-TYPE 
             97             880 
[1] "MAP3K1 MUTATION ANALYSIS"
[1] 3
  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
              71              906 
  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
              71              906 
[1] "CDH1 MUTATION ANALYSIS"
[1] 3
  CDH1 MUTATED CDH1 WILD-TYPE 
           107            870 
  CDH1 MUTATED CDH1 WILD-TYPE 
           107            870 
[1] "CBFB MUTATION ANALYSIS"
[1] 3
  CBFB MUTATED CBFB WILD-TYPE 
            22            955 
  CBFB MUTATED CBFB WILD-TYPE 
            22            955 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            35            942 
  PTEN MUTATED PTEN WILD-TYPE 
            35            942 
[1] "RUNX1 MUTATION ANALYSIS"
[1] 3
  RUNX1 MUTATED RUNX1 WILD-TYPE 
             29             948 
  RUNX1 MUTATED RUNX1 WILD-TYPE 
             29             948 
[1] "MLL3 MUTATION ANALYSIS"
[1] 3
  MLL3 MUTATED MLL3 WILD-TYPE 
            70            907 
  MLL3 MUTATED MLL3 WILD-TYPE 
            70            907 
[1] "CDKN1B MUTATION ANALYSIS"
[1] 3
  CDKN1B MUTATED CDKN1B WILD-TYPE 
              10              967 
  CDKN1B MUTATED CDKN1B WILD-TYPE 
              10              967 
[1] "MAP2K4 MUTATION ANALYSIS"
[1] 3
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
              32              945 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
              32              945 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              27              950 
  ARID1A MUTATED ARID1A WILD-TYPE 
              27              950 
[1] "FOXA1 MUTATION ANALYSIS"
[1] 3
  FOXA1 MUTATED FOXA1 WILD-TYPE 
             23             954 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
             23             954 
[1] "GPS2 MUTATION ANALYSIS"
[1] 3
  GPS2 MUTATED GPS2 WILD-TYPE 
            10            967 
  GPS2 MUTATED GPS2 WILD-TYPE 
            10            967 
[1] "TBX3 MUTATION ANALYSIS"
[1] 3
  TBX3 MUTATED TBX3 WILD-TYPE 
            27            950 
  TBX3 MUTATED TBX3 WILD-TYPE 
            27            950 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           19           958 
  RB1 MUTATED RB1 WILD-TYPE 
           19           958 
[1] "CTCF MUTATION ANALYSIS"
[1] 3
  CTCF MUTATED CTCF WILD-TYPE 
            16            961 
  CTCF MUTATED CTCF WILD-TYPE 
            16            961 
[1] "RBMX MUTATION ANALYSIS"
[1] 3
  RBMX MUTATED RBMX WILD-TYPE 
            13            964 
  RBMX MUTATED RBMX WILD-TYPE 
            13            964 
[1] "HRNR MUTATION ANALYSIS"
[1] 3
  HRNR MUTATED HRNR WILD-TYPE 
            31            946 
  HRNR MUTATED HRNR WILD-TYPE 
            31            946 
[1] "ZMYM3 MUTATION ANALYSIS"
[1] 3
  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
             15             962 
  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
             15             962 
[1] "NCOR1 MUTATION ANALYSIS"
[1] 3
  NCOR1 MUTATED NCOR1 WILD-TYPE 
             40             937 
  NCOR1 MUTATED NCOR1 WILD-TYPE 
             40             937 
[1] "GPRIN2 MUTATION ANALYSIS"
[1] 3
  GPRIN2 MUTATED GPRIN2 WILD-TYPE 
              11              966 
  GPRIN2 MUTATED GPRIN2 WILD-TYPE 
              11              966 
[1] "SPEN MUTATION ANALYSIS"
[1] 3
  SPEN MUTATED SPEN WILD-TYPE 
            32            945 
  SPEN MUTATED SPEN WILD-TYPE 
            32            945 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
           28           949 
  NF1 MUTATED NF1 WILD-TYPE 
           28           949 
[1] "TCP11 MUTATION ANALYSIS"
[1] 3
  TCP11 MUTATED TCP11 WILD-TYPE 
              6             971 
  TCP11 MUTATED TCP11 WILD-TYPE 
              6             971 
[1] "SF3B1 MUTATION ANALYSIS"
[1] 3
  SF3B1 MUTATED SF3B1 WILD-TYPE 
             16             961 
  SF3B1 MUTATED SF3B1 WILD-TYPE 
             16             961 
[1] "ERBB2 MUTATION ANALYSIS"
[1] 3
  ERBB2 MUTATED ERBB2 WILD-TYPE 
             20             957 
  ERBB2 MUTATED ERBB2 WILD-TYPE 
             20             957 
[1] "RAB42 MUTATION ANALYSIS"
[1] 3
  RAB42 MUTATED RAB42 WILD-TYPE 
              4             973 
  RAB42 MUTATED RAB42 WILD-TYPE 
              4             973 
[1] "CDC42EP1 MUTATION ANALYSIS"
[1] 3
  CDC42EP1 MUTATED CDC42EP1 WILD-TYPE 
                 5                972 
  CDC42EP1 MUTATED CDC42EP1 WILD-TYPE 
                 5                972 
[1] "KDM6A MUTATION ANALYSIS"
[1] 3
  KDM6A MUTATED KDM6A WILD-TYPE 
             15             962 
  KDM6A MUTATED KDM6A WILD-TYPE 
             15             962 
[1] "AQP12A MUTATION ANALYSIS"
[1] 3
  AQP12A MUTATED AQP12A WILD-TYPE 
               6              971 
  AQP12A MUTATED AQP12A WILD-TYPE 
               6              971 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
             6            971 
  KRAS MUTATED KRAS WILD-TYPE 
             6            971 
[1] "NBPF9 MUTATION ANALYSIS"
[1] 3
  NBPF9 MUTATED NBPF9 WILD-TYPE 
              5             972 
  NBPF9 MUTATED NBPF9 WILD-TYPE 
              5             972 
[1] "MYB MUTATION ANALYSIS"
[1] 3
  MYB MUTATED MYB WILD-TYPE 
           12           965 
  MYB MUTATED MYB WILD-TYPE 
           12           965 
[1] "ZNF362 MUTATION ANALYSIS"
[1] 3
  ZNF362 MUTATED ZNF362 WILD-TYPE 
               5              972 
  ZNF362 MUTATED ZNF362 WILD-TYPE 
               5              972 
[1] "TBL1XR1 MUTATION ANALYSIS"
[1] 3
  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
                9               968 
  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
                9               968 
[1] "SP3 MUTATION ANALYSIS"
[1] 3
  SP3 MUTATED SP3 WILD-TYPE 
            7           970 
  SP3 MUTATED SP3 WILD-TYPE 
            7           970 
[1] "FGFR2 MUTATION ANALYSIS"
[1] 3
  FGFR2 MUTATED FGFR2 WILD-TYPE 
             11             966 
  FGFR2 MUTATED FGFR2 WILD-TYPE 
             11             966 
[1] "ZBTB7C MUTATION ANALYSIS"
[1] 3
  ZBTB7C MUTATED ZBTB7C WILD-TYPE 
               5              972 
  ZBTB7C MUTATED ZBTB7C WILD-TYPE 
               5              972 
[1] "NCDN MUTATION ANALYSIS"
[1] 3
  NCDN MUTATED NCDN WILD-TYPE 
             4            973 
  NCDN MUTATED NCDN WILD-TYPE 
             4            973 
[1] "MUC6 MUTATION ANALYSIS"
[1] 3
  MUC6 MUTATED MUC6 WILD-TYPE 
            14            963 
  MUC6 MUTATED MUC6 WILD-TYPE 
            14            963 
[1] "TGS1 MUTATION ANALYSIS"
[1] 3
  TGS1 MUTATED TGS1 WILD-TYPE 
            13            964 
  TGS1 MUTATED TGS1 WILD-TYPE 
            13            964 
[1] "TFE3 MUTATION ANALYSIS"
[1] 3
  TFE3 MUTATED TFE3 WILD-TYPE 
             7            970 
  TFE3 MUTATED TFE3 WILD-TYPE 
             7            970 
[1] "IRS4 MUTATION ANALYSIS"
[1] 3
  IRS4 MUTATED IRS4 WILD-TYPE 
            11            966 
  IRS4 MUTATED IRS4 WILD-TYPE 
            11            966 
[1] "NLGN3 MUTATION ANALYSIS"
[1] 3
  NLGN3 MUTATED NLGN3 WILD-TYPE 
             11             966 
  NLGN3 MUTATED NLGN3 WILD-TYPE 
             11             966 
[1] "IL1RAP MUTATION ANALYSIS"
[1] 3
  IL1RAP MUTATED IL1RAP WILD-TYPE 
               9              968 
  IL1RAP MUTATED IL1RAP WILD-TYPE 
               9              968 
[1] "USP36 MUTATION ANALYSIS"
[1] 3
  USP36 MUTATED USP36 WILD-TYPE 
              8             969 
  USP36 MUTATED USP36 WILD-TYPE 
              8             969 
[1] "CASZ1 MUTATION ANALYSIS"
[1] 3
  CASZ1 MUTATED CASZ1 WILD-TYPE 
             14             963 
  CASZ1 MUTATED CASZ1 WILD-TYPE 
             14             963 
[1] "EYS MUTATION ANALYSIS"
[1] 3
  EYS MUTATED EYS WILD-TYPE 
           21           956 
  EYS MUTATED EYS WILD-TYPE 
           21           956 
[1] "KCNN3 MUTATION ANALYSIS"
[1] 3
  KCNN3 MUTATED KCNN3 WILD-TYPE 
              9             968 
  KCNN3 MUTATED KCNN3 WILD-TYPE 
              9             968 
[1] "ZFP36L1 MUTATION ANALYSIS"
[1] 3
  ZFP36L1 MUTATED ZFP36L1 WILD-TYPE 
                8               969 
  ZFP36L1 MUTATED ZFP36L1 WILD-TYPE 
                8               969 
[1] "ICOSLG MUTATION ANALYSIS"
[1] 3
  ICOSLG MUTATED ICOSLG WILD-TYPE 
               5              972 
  ICOSLG MUTATED ICOSLG WILD-TYPE 
               5              972 
[1] "ACTL6B MUTATION ANALYSIS"
[1] 3
  ACTL6B MUTATED ACTL6B WILD-TYPE 
              10              967 
  ACTL6B MUTATED ACTL6B WILD-TYPE 
              10              967 
[1] "MYH9 MUTATION ANALYSIS"
[1] 3
  MYH9 MUTATED MYH9 WILD-TYPE 
            18            959 
  MYH9 MUTATED MYH9 WILD-TYPE 
            18            959 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             15             962 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             15             962 
[1] "FRMPD2 MUTATION ANALYSIS"
[1] 3
  FRMPD2 MUTATED FRMPD2 WILD-TYPE 
              13              964 
  FRMPD2 MUTATED FRMPD2 WILD-TYPE 
              13              964 
[1] "ZFP36L2 MUTATION ANALYSIS"
[1] 3
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                7               970 
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                7               970 
[1] "TPP2 MUTATION ANALYSIS"
[1] 3
  TPP2 MUTATED TPP2 WILD-TYPE 
             8            969 
  TPP2 MUTATED TPP2 WILD-TYPE 
             8            969 
[1] "C17ORF95 MUTATION ANALYSIS"
[1] 3
  C17ORF95 MUTATED C17ORF95 WILD-TYPE 
                 5                972 
  C17ORF95 MUTATED C17ORF95 WILD-TYPE 
                 5                972 
[1] "RUFY1 MUTATION ANALYSIS"
[1] 3
  RUFY1 MUTATED RUFY1 WILD-TYPE 
              6             971 
  RUFY1 MUTATED RUFY1 WILD-TYPE 
              6             971 
[1] "MED23 MUTATION ANALYSIS"
[1] 3
  MED23 MUTATED MED23 WILD-TYPE 
             14             963 
  MED23 MUTATED MED23 WILD-TYPE 
             14             963 
[1] "PAX2 MUTATION ANALYSIS"
[1] 3
  PAX2 MUTATED PAX2 WILD-TYPE 
             4            973 
  PAX2 MUTATED PAX2 WILD-TYPE 
             4            973 
[1] "MED12 MUTATION ANALYSIS"
[1] 3
  MED12 MUTATED MED12 WILD-TYPE 
             21             956 
  MED12 MUTATED MED12 WILD-TYPE 
             21             956 
[1] "CHD4 MUTATION ANALYSIS"
[1] 3
  CHD4 MUTATED CHD4 WILD-TYPE 
            19            958 
  CHD4 MUTATED CHD4 WILD-TYPE 
            19            958 
[1] "PFKP MUTATION ANALYSIS"
[1] 3
  PFKP MUTATED PFKP WILD-TYPE 
             6            971 
  PFKP MUTATED PFKP WILD-TYPE 
             6            971 
[1] "RHBG MUTATION ANALYSIS"
[1] 3
  RHBG MUTATED RHBG WILD-TYPE 
             4            973 
  RHBG MUTATED RHBG WILD-TYPE 
             4            973 
[1] "PSIP1 MUTATION ANALYSIS"
[1] 3
  PSIP1 MUTATED PSIP1 WILD-TYPE 
              8             969 
  PSIP1 MUTATED PSIP1 WILD-TYPE 
              8             969 
[1] "LRIG2 MUTATION ANALYSIS"
[1] 3
  LRIG2 MUTATED LRIG2 WILD-TYPE 
              7             970 
  LRIG2 MUTATED LRIG2 WILD-TYPE 
              7             970 
[1] "RIBC1 MUTATION ANALYSIS"
[1] 3
  RIBC1 MUTATED RIBC1 WILD-TYPE 
              4             973 
  RIBC1 MUTATED RIBC1 WILD-TYPE 
              4             973 
[1] "PLK2 MUTATION ANALYSIS"
[1] 3
  PLK2 MUTATED PLK2 WILD-TYPE 
             9            968 
  PLK2 MUTATED PLK2 WILD-TYPE 
             9            968 
[1] "ANKRD20A4 MUTATION ANALYSIS"
[1] 3
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  7                 970 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  7                 970 
[1] "PHACTR1 MUTATION ANALYSIS"
[1] 3
  PHACTR1 MUTATED PHACTR1 WILD-TYPE 
                7               970 
  PHACTR1 MUTATED PHACTR1 WILD-TYPE 
                7               970 
[1] "DLG1 MUTATION ANALYSIS"
[1] 3
  DLG1 MUTATED DLG1 WILD-TYPE 
            13            964 
  DLG1 MUTATED DLG1 WILD-TYPE 
            13            964 
[1] "GPRASP2 MUTATION ANALYSIS"
[1] 3
  GPRASP2 MUTATED GPRASP2 WILD-TYPE 
               10               967 
  GPRASP2 MUTATED GPRASP2 WILD-TYPE 
               10               967 
[1] "CCDC82 MUTATION ANALYSIS"
[1] 3
  CCDC82 MUTATED CCDC82 WILD-TYPE 
               6              971 
  CCDC82 MUTATED CCDC82 WILD-TYPE 
               6              971 
[1] "CCDC27 MUTATION ANALYSIS"
[1] 3
  CCDC27 MUTATED CCDC27 WILD-TYPE 
               7              970 
  CCDC27 MUTATED CCDC27 WILD-TYPE 
               7              970 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
             6            971 
  RHOA MUTATED RHOA WILD-TYPE 
             6            971 
[1] "MAMLD1 MUTATION ANALYSIS"
[1] 3
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
              10              967 
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
              10              967 
[1] "OR8D1 MUTATION ANALYSIS"
[1] 3
  OR8D1 MUTATED OR8D1 WILD-TYPE 
              5             972 
  OR8D1 MUTATED OR8D1 WILD-TYPE 
              5             972 
[1] "data2feature, selection=ALL"
 [1] "YEARS_TO_BIRTH"                      
 [2] "VITAL_STATUS"                        
 [3] "DAYS_TO_DEATH"                       
 [4] "DAYS_TO_LAST_FOLLOWUP"               
 [5] "TUMOR_TISSUE_SITE"                   
 [6] "PATHOLOGIC_STAGE"                    
 [7] "PATHOLOGY_T_STAGE"                   
 [8] "PATHOLOGY_N_STAGE"                   
 [9] "PATHOLOGY_M_STAGE"                   
[10] "GENDER"                              
[11] "DATE_OF_INITIAL_PATHOLOGIC_DIAGNOSIS"
[12] "DAYS_TO_LAST_KNOWN_ALIVE"            
[13] "RADIATION_THERAPY"                   
[14] "HISTOLOGICAL_TYPE"                   
[15] "NUMBER_OF_LYMPH_NODES"               
[16] "RACE"                                
[17] "ETHNICITY"                           

Input Data has 17 rows and 977 columns.

[1] "Last Follow UP"
Variable 1:'YEARS_TO_BIRTH':	nDistinctValues=64,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITAL_STATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYS_TO_DEATH':	nDistinctValues=134,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DAYS_?TO', vnms) to deal with survival parameters seperately"
Variable 4:'DAYS_TO_LAST_FOLLOWUP':	nDistinctValues=657,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('FOLLOWUP', vnms) to deal with survival parameters seperately"
Variable 5:'TUMOR_TISSUE_SITE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "TUMOR_TISSUE_SITE is excluded in the analysis because there is no more than two cases of (unique non-NA values)"
Variable 6:'PATHOLOGIC_STAGE':	nDistinctValues=12,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY_T_STAGE':	nDistinctValues=12,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY_N_STAGE':	nDistinctValues=16,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY_M_STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'DATE_OF_INITIAL_PATHOLOGIC_DIAGNOSIS':	nDistinctValues=26,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "exclude grep('DATE', vnms) to deal with survival parameters seperately"
Variable 12:'DAYS_TO_LAST_KNOWN_ALIVE':	nDistinctValues=2,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
[1] "DAYS_TO_LAST_KNOWN_ALIVE is excluded in the analysis because there is no more than two cases of (freq>=3) when the number of (unique non-NA values) is two"
            2576    735    
freq.values "1"     "1"    
freq >=3    "FALSE" "FALSE"
Variable 13:'RADIATION_THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'HISTOLOGICAL_TYPE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NUMBER_OF_LYMPH_NODES':	nDistinctValues=29,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RACE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'ETHNICITY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "************ conversion from categorical data to rank data ********** "
[1] "PATHOLOGY_T_STAGE is converted to numeric rank data using modified categoies"
[1] "PATHOLOGY_N_STAGE is converted to numeric rank data using modified categoies"
[1] "PATHOLOGY_M_STAGE is converted to rank data using modified categoies"
[1] "****** SUMMARY ***** "
Output Data has 977 columns, 1 survival variables, and 11 non-survival variables.
[1] "* survival variables: "
[1] "DAYS_TO_DEATH_OR_LAST_FUP" "VITAL_STATUS"             
[1] "* non-survival variables: "
 [1] "YEARS_TO_BIRTH"        "PATHOLOGIC_STAGE"      "PATHOLOGY_T_STAGE"    
 [4] "PATHOLOGY_N_STAGE"     "PATHOLOGY_M_STAGE"     "GENDER"               
 [7] "RADIATION_THERAPY"     "HISTOLOGICAL_TYPE"     "NUMBER_OF_LYMPH_NODES"
[10] "RACE"                  "ETHNICITY"            
YEARS_TO_BIRTH, nv=64, binary=FALSE, numeric=TRUE
PATHOLOGIC_STAGE, nv=12, binary=FALSE, numeric=FALSE
PATHOLOGY_T_STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
257 564 120  35 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
257 564 120  35 
$ClinVariableName
[1] "PATHOLOGY_T_STAGE"

$Table
vv
 T1  T2  T3  T4 
257 564 120  35 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
257 564 120  35 
PATHOLOGY_N_STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
462 325 107  68 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
462 325 107  68 
$ClinVariableName
[1] "PATHOLOGY_N_STAGE"

$Table
vv
 N0  N1  N2  N3 
462 325 107  68 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
462 325 107  68 
PATHOLOGY_M_STAGE, nv=2, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
RADIATION_THERAPY, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL_TYPE, nv=8, binary=FALSE, numeric=FALSE
NUMBER_OF_LYMPH_NODES, nv=29, binary=FALSE, numeric=TRUE
RACE, nv=4, binary=FALSE, numeric=FALSE
ETHNICITY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = PIK3CA MUTATION ANALYSIS
D1V1, survival
                  sevent
clus2                0   1
  PIK3CA MUTATED   272  40
  PIK3CA WILD-TYPE 554  98
  PIK3CA MUTATED PIK3CA WILD-TYPE 
             312              652 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              40               98 
$`PIK3CA MUTATED`
TCGA-A2-A04V TCGA-A2-A25A TCGA-A7-A26E TCGA-A7-A26H TCGA-A7-A3J1 TCGA-A8-A06U 
       63.12       107.70        31.36        23.80        11.28        29.03 
TCGA-A8-A084 TCGA-A8-A093 TCGA-A8-A09C TCGA-AC-A3W6 TCGA-AC-A5XS TCGA-AQ-A0Y5 
       15.06        17.95         1.02        19.79        19.33         5.65 
TCGA-AQ-A54O TCGA-AR-A5QM TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       32.91        73.35        81.63        54.05        32.58        21.44 
TCGA-D8-A146 TCGA-E2-A1BC TCGA-E2-A1L8 TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-GM-A2DD 
       21.14        16.47        73.64        26.99        15.68        75.02 
TCGA-LL-A50Y TCGA-A1-A0SI TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04T TCGA-A2-A04W 
       25.05        20.88       143.15        18.02        73.84       101.98 
TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CW TCGA-A2-A0D1 TCGA-A2-A0D3 
       92.48       107.93        77.19       107.93        34.55        61.58 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EQ TCGA-A2-A0EV TCGA-A2-A0EW 
      101.72       134.40        80.28        79.76        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0SY TCGA-A2-A0T4 TCGA-A2-A0T7 TCGA-A2-A0YC 
       24.72        63.29        44.28        20.52        20.75        32.55 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YT TCGA-A2-A1FZ 
       21.67        49.48        19.33        48.46        23.77        22.45 
TCGA-A2-A1G0 TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A3KC TCGA-A2-A4RY TCGA-A2-A4S2 
       20.25        17.19        18.15        36.23        21.30        21.14 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A425 
       34.29        35.47        30.61        37.45        33.11        14.70 
TCGA-A7-A4SB TCGA-A7-A4SF TCGA-A7-A5ZW TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       13.74        17.92        10.72        13.02         1.02        17.98 
TCGA-A8-A075 TCGA-A8-A07B TCGA-A8-A07G TCGA-A8-A07Z TCGA-A8-A08B TCGA-A8-A08L 
       17.03        43.00        18.97        45.07        38.01         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08Z TCGA-A8-A092 
       31.00        31.00         0.99       112.08        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A09D TCGA-A8-A0A1 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       41.98        50.04        12.00        21.04         0.99        27.02 
TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2FO TCGA-AC-A2QI 
       19.23        22.95         5.72        22.26        74.14        19.33 
TCGA-AC-A3OD TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YJ TCGA-AC-A5EH 
       14.83        25.05        14.99        15.48        24.79        16.80 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04C TCGA-AN-A0AJ 
        0.33         0.33         0.33         0.62         1.78         9.96 
TCGA-AN-A0AK TCGA-AN-A0FF TCGA-AN-A0FS TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP 
        7.36         5.65         6.90         5.36        12.33         0.30 
TCGA-AN-A0XS TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A0J5 TCGA-AO-A0J7 
        0.33        80.28        61.35        66.77        26.04        20.32 
TCGA-AO-A0JA TCGA-AO-A0JF TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A12A TCGA-AO-A1KR 
       21.53        65.10       113.62       108.72       102.31        82.62 
TCGA-AQ-A1H2 TCGA-AR-A1AL TCGA-AR-A1AS TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A24K 
       15.62        97.68        37.81        61.28        86.53        50.89 
TCGA-AR-A24M TCGA-AR-A24O TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A255 TCGA-AR-A2LJ 
      120.33       118.59        97.84       105.27        71.05        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A5QP TCGA-B6-A0I5 TCGA-B6-A0IC TCGA-B6-A0IE 
       54.21        63.62        38.96       281.29        50.70        65.52 
TCGA-B6-A0IK TCGA-B6-A0IP TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RN TCGA-B6-A0RO 
       18.77       129.07        68.45       212.25       263.28       162.05 
TCGA-B6-A0RQ TCGA-B6-A0WW TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KI TCGA-B6-A401 
      140.28        18.35        68.94        58.55        73.51        85.35 
TCGA-B6-A408 TCGA-B6-A40B TCGA-BH-A0B0 TCGA-BH-A0B5 TCGA-BH-A0BA TCGA-BH-A0BC 
       68.12       103.63        81.44        70.22        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BT 
       18.21        43.53        21.70        61.68        72.23        77.75 
TCGA-BH-A0BV TCGA-BH-A0DE TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DT 
       49.94        77.98        13.91        78.28        15.65        79.00 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0GY TCGA-BH-A0H3 
       67.86        70.88        24.49        31.00        30.35        63.39 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HN TCGA-BH-A0W3 
       41.00        52.96        23.90        20.38        16.96        23.93 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A1ET 
       42.35        44.81        32.91        35.93        20.12        82.85 
TCGA-BH-A1EU TCGA-BH-A1F8 TCGA-BH-A1FE TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A208 
       42.28        25.08        74.73        26.14        38.60        57.83 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42V TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12N 
       20.12        10.52        20.88        23.51        11.93        11.77 
TCGA-C8-A12U TCGA-C8-A12Y TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A1HE TCGA-C8-A1HF 
       12.66        48.53        12.16        13.51        12.33        10.92 
TCGA-C8-A26W TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A143 
       12.53        16.70         9.76        33.99        12.95        14.17 
TCGA-D8-A1J8 TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       14.17        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JU 
       20.09        20.12        20.38        21.01        12.20        14.70 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XS TCGA-D8-A1XY TCGA-D8-A1Y1 
       19.92        17.69        55.30        16.31        16.54         9.93 
TCGA-D8-A1Y2 TCGA-D8-A27G TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27P TCGA-D8-A27T 
       14.24        13.45        48.03        16.41         1.61        13.08 
TCGA-D8-A3Z6 TCGA-E2-A105 TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10F TCGA-E2-A14U 
       18.51        43.00        37.51        40.11        28.87        43.33 
TCGA-E2-A14V TCGA-E2-A14Y TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A15C 
       34.26        69.34        23.24        19.43        23.87        22.82 
TCGA-E2-A15E TCGA-E2-A15G TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15P TCGA-E2-A1B4 
       20.71        18.21         9.04        20.58        19.56        33.01 
TCGA-E2-A1BD TCGA-E2-A1IF TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1L6 
       37.25        37.41         3.88        22.19        60.99        54.18 
TCGA-E9-A1N5 TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1R0 TCGA-E9-A1R3 
       36.82        25.84        18.94         9.86        28.27         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1RA TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE 
        6.12         3.02        45.01        40.24         1.12        46.65 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A249 TCGA-E9-A295 
       47.64        34.45        32.05        37.74         7.13        12.33 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1OV 
       12.20        39.72        18.21        18.90        13.25        25.94 
TCGA-EW-A1P0 TCGA-EW-A1P5 TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A2FV TCGA-EW-A3E8 
       41.13        23.11         6.15        10.52        25.91        34.03 
TCGA-GM-A2D9 TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XN 
       59.57        72.10        85.15       110.50        38.20        66.38 
TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LL-A5YN TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       62.47        11.57        14.70        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5DA TCGA-OL-A5RX TCGA-OL-A5S0 TCGA-PE-A5DD TCGA-PE-A5DE 
       36.30        58.62        28.87        20.38        64.21        86.96 

$`PIK3CA WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A7-A0CD TCGA-A7-A13G 
       19.20        36.13        88.60        19.56        38.30        23.61 
TCGA-A7-A26F TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T 
       24.26        21.73        22.32        11.97        11.05        53.06 
TCGA-A8-A07E TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A09E TCGA-A8-A09I 
       19.99        33.01        33.01        33.01        49.05        45.07 
TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A5EI TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT 
       29.98        16.57        14.53        13.71        50.24        17.79 
TCGA-AQ-A54N TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-B6-A0I8 
        2.56        98.33        17.23        66.15        57.27        24.62 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1LG TCGA-EW-A1P3 
       89.16        10.42        14.79        50.79        50.07        52.96 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       85.35        24.95        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SJ TCGA-A1-A0SK 
       43.43        48.10        14.27        47.24        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04U 
        7.96        39.32        18.21        78.41       121.94        87.25 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CT 
       55.43       136.73        99.12        24.79       114.81        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D2 
        5.19        98.99        56.81        53.13        67.33        33.76 
TCGA-A2-A0D4 TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU 
       25.22       118.45        74.40        72.00        35.05        34.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0T0 
       99.19        54.64        27.12        44.88        50.43        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0YD 
       17.13         8.38        49.84        17.46        18.90        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YJ TCGA-A2-A0YM TCGA-A2-A1FV 
       18.21        50.47        21.90        18.61        31.73        23.47 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       17.36        60.72        19.20        16.47        52.47        42.44 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU 
      105.34        10.59        39.65        33.93        91.07        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       32.75        56.28        47.31        35.93        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CE 
        7.30        24.39        23.21        26.96        21.90        35.31 
TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H 
       35.67        29.79        31.73        20.19        25.15        29.56 
TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF 
       23.74        20.61        11.34        10.59        10.29        13.41 
TCGA-A7-A4SA TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZV 
       14.93        14.66        14.50        21.17        14.73        12.10 
TCGA-A8-A06O TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 
       13.02        31.00        26.01         1.02        53.98         9.01 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       33.99        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A082 TCGA-A8-A085 
       10.98         8.98        24.99         9.99        18.05        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
       13.02         0.99        28.96        19.96        12.00        37.05 
TCGA-A8-A08X TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09M 
       43.00        12.00         9.99         9.99        12.00        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23G 
       14.01        19.04        13.02        17.03        38.04        73.91 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
       73.05        99.35        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       87.12        26.04        33.04        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3YI TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A041 
       16.31        22.19        23.24        14.96        17.42         0.23 
TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        2.96         1.71         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        0.33         6.44         7.96         7.00         7.59         7.17 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XN TCGA-AN-A0XR TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.53         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
        5.59        81.63        95.70        68.75        69.83        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J6 TCGA-AO-A0J8 
       44.42        32.78        21.40        52.18        37.48        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JJ 
       53.03        50.70        50.86        72.00        76.77        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12B 
       55.33        71.80       115.27       106.78       108.03        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H3 
       97.08        11.51        24.79        26.93       130.09        32.52 
TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 
       84.10        23.31        64.83        55.86        65.36       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       134.14       125.16       108.36       101.00       103.86 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AT TCGA-AR-A1AU 
       96.00        86.07        93.90        99.32        41.82        94.29 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24N TCGA-AR-A24P 
       86.43        33.73       160.90        94.22        99.78         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
      104.28       112.77       102.84       105.30        50.96        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A256 
       98.66        89.00        99.62        93.30        85.64        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
      166.42        20.25        38.17        39.39        40.54        33.30 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA 
       10.59        77.62       143.38        32.58        11.90       275.87 
TCGA-B6-A0IB TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM TCGA-B6-A0IN 
      129.57       146.50       112.37       233.62       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RI TCGA-B6-A0RP TCGA-B6-A0RT 
      165.76       140.88       255.68       234.28       102.77        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WX 
      282.90       169.51        97.48       188.68        79.46        21.01 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A1KC 
      113.79       206.86       129.70       245.10        28.27        43.59 
TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A402 
      101.52       139.17       170.17        37.87         7.07        74.99 
TCGA-B6-A409 TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
       18.84        71.15        62.93        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B7 TCGA-BH-A0B8 
       63.09        37.74        39.55        39.16        84.13        51.58 
TCGA-BH-A0B9 TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       51.68        61.51        74.89        75.48        74.14        76.60 
TCGA-BH-A0BS TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       85.87        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DQ 
       90.97        81.73        67.10        38.01        29.98         3.22 
TCGA-BH-A0DS TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
        2.56        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EI TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H5 
       44.81        81.83        63.32        10.78        15.16        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0HB TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HO 
       24.56        23.08        26.50         5.85         2.37         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
       13.61        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W4 TCGA-BH-A0WA TCGA-BH-A18G TCGA-BH-A18K TCGA-BH-A18L 
        5.59        24.95        23.05         4.90        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       12.00        55.69        49.58        17.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
       97.48       114.15        33.17       122.83        33.99        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07        53.98        55.50        28.14 
TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A42U TCGA-BH-A5IZ 
       83.31       130.16        36.82        36.79       110.60        18.64 
TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Z TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.66        12.56        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM 
       12.49        11.34        11.28         0.16        12.03        12.33 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z 
       12.95        12.33        20.25        12.36        12.95        15.45 
TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A27A TCGA-C8-A27B TCGA-D8-A13Y TCGA-D8-A13Z 
       16.87         0.03        24.56        14.43        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J9 
       13.25        20.58        13.97        13.48        19.20        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JI TCGA-D8-A1JL TCGA-D8-A1JM 
       16.50        55.50        15.78        18.97        20.09        19.40 
TCGA-D8-A1JT TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       13.32        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        15.22        14.73        21.83 
TCGA-D8-A1XK TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       14.50        16.41        15.85        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       43.04        15.32        15.52        14.14        17.42        16.04 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27R TCGA-D8-A27V 
       13.05        14.43        13.48        17.06        10.09        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A4Z1 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 
       12.26        33.37        21.67        34.42        27.52        46.59 
TCGA-E2-A10A TCGA-E2-A10E TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       40.41        28.44        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Z 
       38.60        33.17        75.98        32.02        31.96        18.51 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A155 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15D 
       63.62        69.96        21.04        25.05        23.34        17.29 
TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15M TCGA-E2-A15R 
       21.63        12.92        55.63        53.92        11.05        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B5 
       14.07        51.39        76.57        53.62        87.22        32.35 
TCGA-E2-A1B6 TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ 
       28.50        77.65        70.36        33.73        33.70        28.44 
TCGA-E2-A1IK TCGA-E2-A1IU TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       59.18        11.08        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       34.82        32.88        34.16        36.20        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R6 
       41.62        35.77        35.24        24.82        34.95        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RB TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A228 
       48.23        32.09         6.58        21.27        46.59        42.25 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A2JS 
       20.12         0.69        38.99         1.94        24.56        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IY 
       23.84        26.70         0.79        25.81        26.40         8.48 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P1 
       16.57        28.77        29.95        29.85        40.41        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       29.82        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PD TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FW 
       13.94        34.55        19.96        55.00        52.73        22.09 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.49        17.52         7.40       109.87       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       83.34        70.85        86.96       115.69       106.06       101.62 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       43.73        69.30        72.03        13.55        18.12         2.60 
TCGA-JL-A3YW TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YO TCGA-OL-A5D7 
       11.84        32.75        17.06        15.32        14.47        58.52 
TCGA-OL-A5D8 TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A66H 
       31.99        34.92        36.36        24.72        22.32        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       23.47        65.62        41.92        47.01 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            0.30             0.03 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
          281.29           282.90 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
          27.005           32.035 
[1] "0.3 - 281.3 (27.0)" "0.0 - 282.9 (32.0)"
[1] "hr=" "1"  
D1V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  PIK3CA MUTATED        28       31        1        3       102        74
  PIK3CA WILD-TYPE      60       40        5        1       224       153
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  PIK3CA MUTATED           1         41          5         19        5       4
  PIK3CA WILD-TYPE         1         96         19         38       10       8
D1V3, multiclass
            clus
vv           PIK3CA MUTATED PIK3CA WILD-TYPE
  STAGE I                28               60
  STAGE IA               31               40
  STAGE IB                1                5
  STAGE II                3                1
  STAGE IIA             102              224
  STAGE IIB              74              153
  STAGE III               1                1
  STAGE IIIA             41               96
  STAGE IIIB              5               19
  STAGE IIIC             19               38
  STAGE IV                5               10
  STAGE X                 4                8
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  PIK3CA MUTATED    89 178  39  10
  PIK3CA WILD-TYPE 168 386  81  25
D1V4, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1             89              168
  T2            178              386
  T3             39               81
  T4             10               25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  PIK3CA MUTATED   155 103  33  22
  PIK3CA WILD-TYPE 307 222  74  46
D1V5, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0            155              307
  N1            103              222
  N2             33               74
  N3             22               46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V6, binary
                  cls
clus                 0   1
  PIK3CA MUTATED   267   5
  PIK3CA WILD-TYPE 575  11
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED    267    5
  PIK3CA WILD-TYPE  575   11
   clus
vv  PIK3CA MUTATED PIK3CA WILD-TYPE
  0            267              575
  1              5               11
[1] 2 2
[1] FALSE
D1V7, binary
                  cls
clus                 0   1
  PIK3CA MUTATED   313   3
  PIK3CA WILD-TYPE 655   6
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED    313    3
  PIK3CA WILD-TYPE  655    6
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE            313              655
  MALE                3                6
[1] 2 2
[1] FALSE
D1V8, binary
                  cls
clus                 0   1
  PIK3CA MUTATED   126 169
  PIK3CA WILD-TYPE 261 333
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED    126  169
  PIK3CA WILD-TYPE  261  333
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  NO             126              261
  YES            169              333
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  PIK3CA MUTATED                            0                           216
  PIK3CA WILD-TYPE                          1                           495
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  PIK3CA MUTATED                               74                   0
  PIK3CA WILD-TYPE                             98                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  PIK3CA MUTATED                       0                               12
  PIK3CA WILD-TYPE                     6                               15
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  PIK3CA MUTATED                    0             14
  PIK3CA WILD-TYPE                 14             26
D1V9, multiclass
                                  clus
vv                                 PIK3CA MUTATED PIK3CA WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA               216              495
  INFILTRATING LOBULAR CARCINOMA               74               98
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)             12               15
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                               14               26
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PIK3CA MUTATED                                  0    21
  PIK3CA WILD-TYPE                                1    36
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  PIK3CA MUTATED                          28   237
  PIK3CA WILD-TYPE                        93   468
D1V11, multiclass
                                  clus
vv                                 PIK3CA MUTATED PIK3CA WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                        21               36
  BLACK OR AFRICAN AMERICAN                    28               93
  WHITE                                       237              468
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V12, binary
                  cls
clus                 0   1
  PIK3CA MUTATED     9 250
  PIK3CA WILD-TYPE  25 522
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      9  250
  PIK3CA WILD-TYPE   25  522
                        clus
vv                       PIK3CA MUTATED PIK3CA WILD-TYPE
  HISPANIC OR LATINO                  9               25
  NOT HISPANIC OR LATINO            250              522
[1] 2 2
[1] FALSE

Clustering(2) Variable = TP53 MUTATION ANALYSIS
D2V1, survival
                sevent
clus2              0   1
  TP53 MUTATED   243  49
  TP53 WILD-TYPE 583  89
  TP53 MUTATED TP53 WILD-TYPE 
           292            672 
  TP53 MUTATED TP53 WILD-TYPE 
            49             89 
$`TP53 MUTATED`
TCGA-A1-A0SP TCGA-A7-A26F TCGA-A7-A26I TCGA-A7-A2KD TCGA-A8-A06U TCGA-AC-A62X 
       19.20        24.26        21.73        22.32        29.03        13.71 
TCGA-AQ-A54N TCGA-AR-A1AR TCGA-AR-A2LR TCGA-BH-A18H TCGA-E2-A158 TCGA-E2-A1LG 
        2.56        17.23        57.27        21.44        14.79        50.07 
TCGA-E2-A2P5 TCGA-GM-A2DD TCGA-LL-A5YP TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A2-A04P 
       26.99        75.02        14.79        20.88        31.79        18.02 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A0CM TCGA-A2-A0CW TCGA-A2-A0D0 
       73.84        87.25       101.98        24.79       107.93        67.33 
TCGA-A2-A0D1 TCGA-A2-A0EQ TCGA-A2-A0EY TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       34.55        79.76        63.29        27.12        44.88        50.43 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0YE TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ 
       17.13         8.38        18.21        21.90        21.67        18.61 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1G1 TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XV 
       31.73        23.77        19.20        33.93        91.07        32.75 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3Y0 TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CE 
       47.31        35.93        50.83        26.96        21.90        35.31 
TCGA-A7-A0CJ TCGA-A7-A0DA TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A26G TCGA-A7-A3RF 
       30.61        35.67        31.73        20.19        23.74        13.41 
TCGA-A7-A4SA TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A8-A06O 
       14.93        14.50        21.17        14.73        12.10        13.02 
TCGA-A8-A06Q TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A079 TCGA-A8-A07C TCGA-A8-A07O 
        1.02         1.02        17.03         9.01        33.99         9.99 
TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A08I TCGA-A8-A08R TCGA-A8-A08X 
        8.98        24.99         9.99        12.00         0.99        43.00 
TCGA-A8-A092 TCGA-A8-A097 TCGA-A8-A09X TCGA-AC-A23C TCGA-AC-A2QH TCGA-AC-A3OD 
       30.97        12.00        14.01        19.23        33.04        14.83 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AN-A046 TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AR 
       16.80        14.96         0.33         9.96         7.46         0.33 
TCGA-AN-A0AS TCGA-AN-A0FJ TCGA-AN-A0FL TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX 
        0.33         7.96         7.59         7.04         0.33         0.33 
TCGA-AN-A0FY TCGA-AN-A0G0 TCGA-AN-A0XN TCGA-AN-A0XT TCGA-AO-A03L TCGA-AO-A03N 
        0.33         0.53         0.33         0.33        80.28        66.77 
TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A0J2 TCGA-AO-A0J6 TCGA-AO-A0JB TCGA-AO-A0JD 
       81.63        68.75        32.78        37.48        50.70        72.00 
TCGA-AO-A0JL TCGA-AO-A124 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12D TCGA-AQ-A04H 
       55.33       115.27       106.78       108.03        82.68        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AR-A0TS TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A0U1 
       26.93       130.09        84.10        64.83        65.36       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AN 
       83.87       134.14       125.16       108.36       101.00        96.00 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AW TCGA-AR-A1AY TCGA-AR-A24K 
       93.90        99.32        37.81        86.53        33.73        50.89 
TCGA-AR-A24P TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A251 TCGA-AR-A254 TCGA-AR-A256 
        2.76        97.84       105.27        99.62        85.64        93.83 
TCGA-AR-A5QQ TCGA-B6-A0I9 TCGA-B6-A0IE TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IQ 
       10.59        11.90        65.52       233.62        18.77       140.88 
TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RU TCGA-B6-A0WX TCGA-B6-A0X1 TCGA-B6-A1KF 
      255.68       212.25       282.90        21.01       245.10       101.52 
TCGA-B6-A1KN TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A409 
      139.17        37.87         7.07        85.35        74.99        18.84 
TCGA-BH-A0AW TCGA-BH-A0B0 TCGA-BH-A0B3 TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BC 
       20.45        81.44        39.55        84.13        51.68        32.02 
TCGA-BH-A0BG TCGA-BH-A0BL TCGA-BH-A0BP TCGA-BH-A0BR TCGA-BH-A0BT TCGA-BH-A0BW 
       61.51        74.89        75.48        76.60        77.75        77.95 
TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DZ TCGA-BH-A0E0 
       41.75        89.06        29.98        78.28        16.27         4.41 
TCGA-BH-A0E6 TCGA-BH-A0GY TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0WA TCGA-BH-A18Q 
        9.63        30.35        27.25         5.59        23.05        55.63 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
        7.36        51.39        51.16        17.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FN TCGA-BH-A1FU 
       97.48       114.15        33.17        74.73        72.07        55.50 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       26.14        38.60        57.83        18.64        23.51        11.93 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12W TCGA-C8-A12Z TCGA-C8-A130 
       12.66        11.77        12.66        12.66        12.56        12.16 
TCGA-C8-A131 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A138 TCGA-C8-A1HF TCGA-C8-A1HG 
       13.51        12.59        12.92        12.49        10.92        11.34 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
        0.16        12.03        12.33        20.25        12.53        12.36 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-D8-A13Z TCGA-D8-A142 
        0.03         9.76        24.56        14.43        20.88        13.97 
TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JJ TCGA-D8-A1JK 
       19.20        17.49        12.03        53.00        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1X5 TCGA-D8-A1XA TCGA-D8-A1XJ TCGA-D8-A1XL 
       20.09        19.40        18.58        27.58        21.83        19.92 
TCGA-D8-A1XQ TCGA-D8-A1XT TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y3 TCGA-D8-A27F 
       16.41        16.64        43.04        15.32        14.14        16.04 
TCGA-D8-A27M TCGA-D8-A27N TCGA-E2-A108 TCGA-E2-A14N TCGA-E2-A14P TCGA-E2-A14R 
       13.48        17.06        27.52        47.15        40.96        38.60 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A155 TCGA-E2-A159 
       31.96        69.34        63.62        69.96        21.04        25.05 
TCGA-E2-A15E TCGA-E2-A15M TCGA-E2-A1B0 TCGA-E2-A1B6 TCGA-E2-A1II TCGA-E2-A1IN 
       20.71        11.05        53.62        28.50        33.70        22.19 
TCGA-E2-A1IO TCGA-E2-A1L7 TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LS TCGA-E2-A573 
       60.99        60.36        28.90       106.75        52.73        34.92 
TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1ND TCGA-E9-A1NF TCGA-E9-A1RB 
       36.82        34.16        36.20        41.62        35.24        32.09 
TCGA-E9-A1RH TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A248 TCGA-E9-A5FL TCGA-EW-A1OY 
       46.59        20.12         0.69         1.94         0.79        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P4 TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PH TCGA-EW-A2FR 
       40.41        29.82        18.90         6.15        19.96        55.00 
TCGA-EW-A3U0 TCGA-GI-A2C9 TCGA-GM-A2DB TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
       17.49       109.87        79.10        70.85        72.10        85.15 
TCGA-GM-A2DL TCGA-GM-A3XL TCGA-JL-A3YW TCGA-LL-A5YO TCGA-OL-A5D6 TCGA-OL-A5D7 
      115.69        69.30        11.84        14.47        36.30        58.52 
TCGA-OL-A5RW TCGA-OL-A5RY TCGA-OL-A66I TCGA-PE-A5DE 
       36.36        24.72        23.47        86.96 

$`TP53 WILD-TYPE`
TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A TCGA-A7-A0CD 
       63.12        36.13        88.60        19.56       107.70        38.30 
TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26H TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX 
       23.61        31.36        23.80        11.28        11.97        11.05 
TCGA-A8-A06T TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 
       53.06        19.99        15.06        33.01        33.01        33.01 
TCGA-A8-A093 TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 
       17.95         1.02        49.05        45.07        29.98        16.57 
TCGA-AC-A3W6 TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       19.79        14.53        19.33        50.24        17.79         5.65 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A2LL TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 
       32.91        98.33        66.15        73.35        24.62        81.63 
TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A15O 
       54.05        32.58        89.16        10.42        21.14        50.79 
TCGA-E2-A1BC TCGA-E2-A1L8 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DO TCGA-LL-A440 
       16.47        73.64        15.68        52.96        85.35        24.95 
TCGA-LL-A50Y TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF 
       25.05        40.08         8.52        14.37        43.43        48.10 
TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ 
       14.27        47.24        13.68         7.96        39.32        18.21 
TCGA-A2-A04N TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL 
      143.15        78.41       121.94        55.43       136.73        99.12 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU 
      114.81        92.48       107.93        77.19        75.25         5.19 
TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       98.99        56.81        53.13        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72       134.40        80.28       118.45        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST 
       35.05        34.29        31.82        61.94        24.72        99.19 
TCGA-A2-A0SU TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       54.64        44.28        17.52        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YI 
       18.90        20.75        32.55        25.28        50.47        49.48 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       19.33        48.46        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       20.25        16.47        52.47        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XU TCGA-A2-A3XW 
      105.34        10.59        36.23        39.65        29.98        56.28 
TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S2 
       50.37         7.30        24.39        21.30        23.21        21.14 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0D9 TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13F 
       34.29        35.47        37.45        33.11        29.79        25.15 
TCGA-A7-A13H TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A425 
       29.56        20.61        11.34        10.59        10.29        14.70 
TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SF TCGA-A7-A5ZW TCGA-A8-A06P TCGA-A8-A06R 
       13.74        14.66        17.92        10.72        13.02        17.98 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07G 
       31.00        26.01        53.98        43.00        18.97        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07P TCGA-A8-A07Z TCGA-A8-A082 
       14.01        12.00        32.05        10.98        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08T TCGA-A8-A08Z 
       37.05         9.99        31.00        31.00       112.08        40.01 
TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       41.98         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       17.03        38.04        22.95        73.91         5.72        22.26 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
       73.05        99.35        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       87.12        26.04        74.14        19.33        14.66        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 
        6.48        16.31        22.19        25.05        14.99        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       23.24        24.79        17.42         0.33         0.33         0.23 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AK TCGA-AN-A0AM 
        0.62         2.96         1.78         1.71         7.36         0.16 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS 
        0.33         6.44         5.65         7.00         7.17         6.90 
TCGA-AN-A0FW TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.36         0.33         5.36        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03P 
        0.33         0.33         5.33         5.59        61.35        95.70 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       69.83        58.95        44.42        21.40        52.18        26.04 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JC TCGA-AO-A0JE 
       20.32        22.36        53.03        21.53        50.86        76.77 
TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A12A 
       65.10        62.04        71.80       113.62       108.72       102.31 
TCGA-AO-A12B TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       98.27        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TU 
       97.08        82.62        11.51        15.62        32.52        23.31 
TCGA-AR-A0TY TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AO TCGA-AR-A1AT TCGA-AR-A1AU 
       55.86       103.86        97.68        86.07        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A24H TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       61.28        86.43       160.90        94.22       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      118.59       104.28       112.77       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A2LE 
       98.76        98.66        89.00        93.30        71.05       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       40.54        33.30        38.96        77.62       143.38       281.29 
TCGA-B6-A0I6 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IG TCGA-B6-A0IH 
       32.58       275.87       129.57        50.70       146.50       112.37 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0RG TCGA-B6-A0RI 
      127.33        84.59       165.76       129.07        68.45       234.28 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV 
      263.28       162.05       102.77       140.28        89.46       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY TCGA-B6-A0WZ 
       97.48       188.68        79.46        18.35       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KI 
      129.70        28.27        68.94        58.55        43.59        73.51 
TCGA-B6-A2IU TCGA-B6-A408 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
      170.17        68.12       103.63        71.15        62.93        59.84 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B1 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B8 
       25.55        63.09        37.74        39.16        70.22        51.58 
TCGA-BH-A0BA TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BM TCGA-BH-A0BO 
       37.22        18.21        43.53        21.70        61.68        72.23 
TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C7 
       74.14        85.87        49.94        74.14        46.39        90.97 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DK TCGA-BH-A0DP 
       81.73        77.98        67.10        38.01        13.91        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0E1 
        3.22         2.56        79.00        67.86        70.88        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
       14.30        44.81        81.83        24.49        31.00        63.32 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        63.39        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK 
       41.00        52.96        26.50        23.90        20.38         5.85 
TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
        2.37        16.96         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       51.32        50.79        23.93        24.95        42.35        44.81 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A1EN 
       72.56        37.74        30.28        37.55        66.05        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1F8 TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       49.58        25.08       122.83        33.99        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FR TCGA-BH-A201 TCGA-BH-A204 TCGA-BH-A209 TCGA-BH-A28O 
       45.63        53.98        28.14        83.31       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-C8-A12M 
       36.79        20.12        10.52       110.60        20.88        11.77 
TCGA-C8-A12N TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A132 
       11.77        12.66        12.66        12.66        48.53        12.59 
TCGA-C8-A137 TCGA-C8-A1HE TCGA-C8-A1HI TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26Y 
       12.46        12.33        11.28        12.95        12.33        12.95 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
       15.45        16.87        16.70        33.99        12.95        56.81 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A1J8 TCGA-D8-A1JA 
       13.25        20.58        14.17        13.48        14.17        16.50 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JH TCGA-D8-A1JI 
       55.50        15.78        18.15        18.90        14.01        18.97 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X6 
       20.38        21.01        12.20        13.32        14.70        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       16.73        25.74        23.90        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS 
       14.73        14.50        17.69        55.30        15.85        16.31 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       12.99        15.16        16.54        15.52         9.93        14.24 
TCGA-D8-A27E TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       17.42        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        1.61        10.09        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A109 TCGA-E2-A10A 
       18.51        21.67        43.00        34.42        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14O TCGA-E2-A14Q 
       37.51        40.11        28.44        28.87        44.68        38.24 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14Z 
       33.17        75.98        43.33        34.26        32.02        18.51 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       23.24        19.43        23.87        23.34        22.82        17.29 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ 
       20.58        19.56        56.94        14.07        51.39        76.57 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       87.22        33.01        32.35        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IU 
       70.36        33.73        28.44        59.18         3.88        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LI TCGA-E2-A1LK 
       54.18        19.66        24.59        75.81       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A574 
       43.04        34.55        43.56         8.28        30.61        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1NE TCGA-E9-A1NG 
       34.82        32.88        36.56        39.55        35.77        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RC 
        6.12         3.02        11.15        48.23        45.01        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RI TCGA-E9-A226 
        1.12        46.65         6.58        21.27        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A247 TCGA-E9-A249 TCGA-E9-A24A 
       41.72        40.73        40.50        38.99         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       12.33        29.72         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5UO TCGA-E9-A5UP 
       30.44        23.90        23.84        26.70        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1P0 TCGA-EW-A1P1 
       16.57        28.77        25.94        29.95        41.13        39.78 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PD 
       23.11        18.48        30.08         7.86        19.99        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       10.52        34.55        52.73        25.91        22.09        34.03 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DK 
       17.52         7.40        59.57       216.76        83.34        86.96 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN 
      106.06       101.62       110.50        38.20        43.73        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YX 
       72.03        13.55        18.12         2.60        62.47        11.57 
TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LQ-A4E4 TCGA-MS-A51U 
       32.75        17.06        15.32        14.70        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RZ 
        2.10        31.99        58.62        34.92        28.87        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD 
       20.38        26.70        65.62        41.92        47.01        64.21 

  TP53 MUTATED TP53 WILD-TYPE 
          0.03           0.16 
  TP53 MUTATED TP53 WILD-TYPE 
        282.90         281.29 
  TP53 MUTATED TP53 WILD-TYPE 
         27.55          32.05 
[1] "0.0 - 282.9 (27.5)" "0.2 - 281.3 (32.0)"
[1] "hr=" "1.3"
D2V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  TP53 MUTATED        26       16        0        1       111        68
  TP53 WILD-TYPE      62       55        6        3       215       159
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  TP53 MUTATED           0         42          7         14        7       1
  TP53 WILD-TYPE         2         95         17         43        8      11
D2V3, multiclass
            clus
vv           TP53 MUTATED TP53 WILD-TYPE
  STAGE I              26             62
  STAGE IA             16             55
  STAGE IB              0              6
  STAGE II              1              3
  STAGE IIA           111            215
  STAGE IIB            68            159
  STAGE III             0              2
  STAGE IIIA           42             95
  STAGE IIIB            7             17
  STAGE IIIC           14             43
  STAGE IV              7              8
  STAGE X               1             11
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  TP53 MUTATED    67 190  29   9
  TP53 WILD-TYPE 190 374  91  26
D2V4, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1           67            190
  T2          190            374
  T3           29             91
  T4            9             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  TP53 MUTATED   148  90  40  16
  TP53 WILD-TYPE 314 235  67  52
D2V5, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0          148            314
  N1           90            235
  N2           40             67
  N3           16             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V6, binary
                cls
clus               0   1
  TP53 MUTATED   261   8
  TP53 WILD-TYPE 581   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED    261    8
  TP53 WILD-TYPE  581    8
   clus
vv  TP53 MUTATED TP53 WILD-TYPE
  0          261            581
  1            8              8
[1] 2 2
[1] FALSE
D2V7, binary
                cls
clus               0   1
  TP53 MUTATED   296   0
  TP53 WILD-TYPE 672   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED    296    0
  TP53 WILD-TYPE  672    9
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE          296            672
  MALE              0              9
[1] 2 2
[1] FALSE
D2V8, binary
                cls
clus               0   1
  TP53 MUTATED   112 154
  TP53 WILD-TYPE 275 348
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED    112  154
  TP53 WILD-TYPE  275  348
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO           112            275
  YES          154            348
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  TP53 MUTATED                            1                           261
  TP53 WILD-TYPE                          0                           450
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  TP53 MUTATED                                9                   3
  TP53 WILD-TYPE                            163                   2
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  TP53 MUTATED                       4                                6
  TP53 WILD-TYPE                     2                               21
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  TP53 MUTATED                    1             10
  TP53 WILD-TYPE                 13             30
D2V9, multiclass
                                  clus
vv                                 TP53 MUTATED TP53 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  1              0
  INFILTRATING DUCTAL CARCINOMA             261            450
  INFILTRATING LOBULAR CARCINOMA              9            163
  MEDULLARY CARCINOMA                         3              2
  METAPLASTIC CARCINOMA                       4              2
  MIXED HISTOLOGY (PLEASE SPECIFY)            6             21
  MUCINOUS CARCINOMA                          1             13
  OTHER, SPECIFY                             10             30
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TP53 MUTATED                                  1    29
  TP53 WILD-TYPE                                0    28
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  TP53 MUTATED                          56   189
  TP53 WILD-TYPE                        65   516
D2V11, multiclass
                                  clus
vv                                 TP53 MUTATED TP53 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            1              0
  ASIAN                                      29             28
  BLACK OR AFRICAN AMERICAN                  56             65
  WHITE                                     189            516
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V12, binary
                cls
clus               0   1
  TP53 MUTATED     7 245
  TP53 WILD-TYPE  27 527
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      7  245
  TP53 WILD-TYPE   27  527
                        clus
vv                       TP53 MUTATED TP53 WILD-TYPE
  HISPANIC OR LATINO                7             27
  NOT HISPANIC OR LATINO          245            527
[1] 2 2
[1] FALSE

Clustering(3) Variable = GATA3 MUTATION ANALYSIS
D3V1, survival
                 sevent
clus2               0   1
  GATA3 MUTATED    79  15
  GATA3 WILD-TYPE 747 123
  GATA3 MUTATED GATA3 WILD-TYPE 
             94             870 
  GATA3 MUTATED GATA3 WILD-TYPE 
             15             123 
$`GATA3 MUTATED`
TCGA-A8-A06T TCGA-AC-A5EI TCGA-BH-A0EA TCGA-C8-A1HL TCGA-EW-A1P3 TCGA-A1-A0SD 
       53.06        14.53        32.58        10.42        52.96        14.37 
TCGA-A1-A0SQ TCGA-A2-A0CV TCGA-A2-A0D3 TCGA-A2-A0SU TCGA-A2-A0T5 TCGA-A2-A25B 
       18.21        98.99        61.58        54.64        17.46        42.44 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A079 TCGA-A8-A08J TCGA-A8-A09R TCGA-AN-A041 
       31.00        26.01         9.01        37.05         8.98         0.23 
TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0FD TCGA-AN-A0FZ TCGA-AN-A0XR TCGA-AO-A03P 
        7.36         0.16         6.44         0.33         0.33        95.70 
TCGA-AO-A0J3 TCGA-AO-A12A TCGA-AR-A0TY TCGA-AR-A0U2 TCGA-AR-A1AP TCGA-AR-A1AV 
       21.40       102.31        55.86        83.87        93.90        61.28 
TCGA-AR-A24N TCGA-AR-A24X TCGA-AR-A252 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IM 
       99.78        98.76        93.30       281.29        11.90       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0RG TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0X0 
       84.59       165.76        68.45        97.48        79.46       129.70 
TCGA-B6-A0X4 TCGA-B6-A40C TCGA-BH-A0AZ TCGA-BH-A0BS TCGA-BH-A0C7 TCGA-BH-A0DG 
       28.27        71.15        63.09        85.87        90.97        67.10 
TCGA-BH-A0DK TCGA-BH-A0DT TCGA-BH-A0E2 TCGA-BH-A0H3 TCGA-BH-A0HF TCGA-BH-A0HP 
       13.91        79.00        14.30        63.39        23.90        13.61 
TCGA-BH-A1FH TCGA-BH-A2L8 TCGA-C8-A12M TCGA-C8-A12U TCGA-C8-A138 TCGA-C8-A1HI 
       33.99        20.12        11.77        12.66        12.49        11.28 
TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A273 TCGA-D8-A140 TCGA-D8-A1J8 TCGA-D8-A1JJ 
       12.95        20.25        16.87        13.25        14.17        20.09 
TCGA-D8-A1JT TCGA-D8-A1X6 TCGA-D8-A27K TCGA-E2-A10A TCGA-E2-A14T TCGA-E2-A15D 
       13.32        17.79        48.03        40.41        75.98        17.29 
TCGA-E2-A15H TCGA-E2-A15J TCGA-E2-A1B5 TCGA-E2-A1L9 TCGA-E2-A570 TCGA-E9-A1N3 
       12.92        53.92        32.35        19.66        30.61        34.82 
TCGA-E9-A1NA TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1R7 TCGA-E9-A1RC TCGA-E9-A1RF 
       36.56        18.94         9.86        48.23        40.24         6.58 
TCGA-E9-A22D TCGA-E9-A249 TCGA-E9-A5UO TCGA-EW-A1OX TCGA-EW-A2FW TCGA-GM-A2DM 
       41.03         7.13        25.81        29.95        22.09       106.06 
TCGA-GM-A2DN TCGA-OL-A5D8 TCGA-OL-A5RX TCGA-OL-A66K 
      101.62        31.99        28.87        41.92 

$`GATA3 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06U TCGA-A8-A07E 
       22.32        11.28        11.97        11.05        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5XS 
       49.05        45.07        29.98        16.57        19.79        19.33 
TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AQ-A54O 
       13.71        50.24        17.79         5.65         2.56        32.91 
TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM TCGA-B6-A0I8 
       98.33        17.23        66.15        57.27        73.35        24.62 
TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A18H TCGA-BH-A1F5 TCGA-D8-A146 TCGA-E2-A158 
       81.63        54.05        21.44        89.16        21.14        14.79 
TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 
       50.79        16.47        73.64        50.07        26.99        15.68 
TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU 
       75.02        85.35        24.95        25.05        14.79        40.08 
TCGA-A1-A0SB TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
        8.52        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A2-A04N TCGA-A2-A04P 
       13.68        31.79         7.96        39.32       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ 
       77.19        75.25         5.19       107.93        56.81        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       67.33        34.55        33.76        25.22       101.72       134.40 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
       80.28       118.45        79.76        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       34.29        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 
       27.12        44.88        50.43        44.28        17.52        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC 
        8.38        49.84        20.52        18.90        20.75        32.55 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI 
       25.28        18.21        50.47        21.90        21.67        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV 
       18.61        19.33        48.46        31.73        23.77        23.47 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 
       17.36        60.72        22.45        20.25        19.20        16.47 
TCGA-A2-A259 TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       52.47        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07C 
       17.98         1.02        17.03        53.98        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T 
       12.00         9.99        31.00        31.00         0.99       112.08 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       43.00        40.01        30.97        41.98        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00        50.04        33.07         1.02        25.02 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       19.04        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD 
       13.02        21.04         0.99        27.02        17.03        38.04 
TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
       19.23        22.95        73.91         5.72        22.26        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       26.04        74.14        33.04        19.33        14.66        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN 
        6.48        16.31        14.83        22.19        25.05        14.99 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y 
       15.48        23.24        24.79        16.80        14.96        17.42 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.33         0.33         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        1.71         9.96         7.46         0.33         0.33         0.33 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0G0 
        7.04         0.33         0.36         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XS TCGA-AN-A0XT 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       81.63        68.75        69.83        58.95        44.42        32.78 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       52.18        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        65.10 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       62.04        55.33        71.80       115.27       113.62       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      106.78       108.03        98.27        82.68        70.42        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U3 TCGA-AR-A1AH 
       23.31        64.83        65.36       133.22       134.14       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO 
      108.36       101.00       103.86        97.68        96.00        86.07 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AW TCGA-AR-A1AX 
       99.32        37.81        41.82        94.29        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24O 
       33.73       160.90        50.89        94.22       120.33       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28       112.77        97.84       105.27       102.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A254 
      105.30        50.96        98.66        89.00        99.62        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       71.05        93.83       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       63.62        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I6 TCGA-B6-A0IA TCGA-B6-A0IB 
       10.59        77.62       143.38        32.58       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
       50.70        65.52       146.50       112.37       233.62        18.77 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      129.07       140.88       255.68       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X1 
      188.68        18.35        21.01       113.79       206.86       245.10 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       68.94        58.55        43.59       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
      170.17        37.87         7.07        85.35        74.99        68.12 
TCGA-B6-A409 TCGA-B6-A40B TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
       18.84       103.63        62.93        59.84        20.45        25.55 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       74.14        76.60        77.75        49.94        77.95        74.14 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DH 
       41.75        46.39        89.06        81.73        77.98        38.01 
TCGA-BH-A0DI TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DV 
       29.98        78.28        15.65         3.22         2.56        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E6 TCGA-BH-A0E7 
       70.88        16.27         4.41        15.68         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       15.16        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO 
       26.50        20.38         5.85         2.37        16.96         2.50 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       36.85        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        4.90        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       37.74        30.28        55.63        37.55        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       51.39        51.16        69.93        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       42.28        12.00        55.69        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       31.53        97.48        25.08       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
      122.83        63.35        55.00        45.63        72.07        53.98 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       55.50        28.14        26.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
      130.16        36.82        36.79        10.52       110.60        20.88 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       18.64        23.51        11.93        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM 
       12.33        10.92        11.34         0.16        12.03        12.33 
TCGA-C8-A1HO TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A274 
       12.33        12.53        12.36        12.95        15.45        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       56.81        20.88        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       19.20        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JK 
       18.90        12.03        53.00        14.01        18.97        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JU 
       20.09        19.40        20.38        21.01        12.20        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       18.58        16.73        25.74        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       12.39        15.22        14.73        21.83        14.50        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       17.69        55.30        16.41        15.85        16.31        16.64 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 
       12.99        15.16        43.04        16.54        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
        9.93        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P 
       13.05        14.43        16.41        13.48        17.06         1.61 
TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 
       10.09        13.08        12.53        12.26        33.37        18.51 
TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10B 
       21.67        43.00        34.42        27.52        46.59        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.24        38.60        33.17        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15I TCGA-E2-A15K TCGA-E2-A15L 
       20.71        21.63        18.21        55.63         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ 
       11.05        19.56        56.94        14.07        51.39        76.57 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE 
       53.62        87.22        33.01        28.50        37.25        77.65 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.41        70.36        33.73        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
        3.88        22.19        60.99        11.08        54.18        60.36 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       24.59        75.81        28.90       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A573 
       43.04        52.73        34.55        43.56         8.28        34.92 
TCGA-E2-A574 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NC 
       38.76        32.88        36.82        34.16        36.20        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1QZ TCGA-E9-A1R0 
       41.62        35.77        35.24        25.84        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1RA 
       34.95         2.56         6.12         3.02        11.15        45.01 
TCGA-E9-A1RB TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
       32.09         1.12        46.65        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        1.94        24.56        12.33        29.72         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       32.91        30.18        30.44        23.90        23.84        26.70 
TCGA-E9-A5FL TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
        0.79        26.40        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OY 
       18.90        13.25        16.57        28.77        25.94        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
       86.96       115.69       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.84        11.57        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 
       58.62        34.92        36.36        24.72        22.32        20.38 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       26.70        23.47        65.62        47.01        64.21        86.96 

  GATA3 MUTATED GATA3 WILD-TYPE 
           0.16            0.03 
  GATA3 MUTATED GATA3 WILD-TYPE 
         281.29          282.90 
  GATA3 MUTATED GATA3 WILD-TYPE 
         31.495          30.525 
[1] "0.2 - 281.3 (31.5)" "0.0 - 282.9 (30.5)"
[1] "hr=" "1"  
D3V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  GATA3 MUTATED         6        3        2        0        37        27
  GATA3 WILD-TYPE      82       68        4        4       289       200
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  GATA3 MUTATED           0         15          1          1        3       2
  GATA3 WILD-TYPE         2        122         23         56       12      10
D3V3, multiclass
            clus
vv           GATA3 MUTATED GATA3 WILD-TYPE
  STAGE I                6              82
  STAGE IA               3              68
  STAGE IB               2               4
  STAGE II               0               4
  STAGE IIA             37             289
  STAGE IIB             27             200
  STAGE III              0               2
  STAGE IIIA            15             122
  STAGE IIIB             1              23
  STAGE IIIC             1              56
  STAGE IV               3              12
  STAGE X                2              10
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  GATA3 MUTATED    18  60  16   3
  GATA3 WILD-TYPE 239 504 104  32
D3V4, multiclass
    clus
vv   GATA3 MUTATED GATA3 WILD-TYPE
  T1            18             239
  T2            60             504
  T3            16             104
  T4             3              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  GATA3 MUTATED    50  30  11   3
  GATA3 WILD-TYPE 412 295  96  65
D3V5, multiclass
    clus
vv   GATA3 MUTATED GATA3 WILD-TYPE
  N0            50             412
  N1            30             295
  N2            11              96
  N3             3              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V6, binary
                 cls
clus                0   1
  GATA3 MUTATED    82   3
  GATA3 WILD-TYPE 760  13
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GATA3 MUTATED     82    3
  GATA3 WILD-TYPE  760   13
   clus
vv  GATA3 MUTATED GATA3 WILD-TYPE
  0            82             760
  1             3              13
[1] 2 2
[1] FALSE
D3V7, binary
                 cls
clus                0   1
  GATA3 MUTATED    96   1
  GATA3 WILD-TYPE 872   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GATA3 MUTATED     96    1
  GATA3 WILD-TYPE  872    8
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  FEMALE            96             872
  MALE               1               8
[1] 2 2
[1] FALSE
D3V8, binary
                 cls
clus                0   1
  GATA3 MUTATED    59  33
  GATA3 WILD-TYPE 328 469
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GATA3 MUTATED     59   33
  GATA3 WILD-TYPE  328  469
     clus
vv    GATA3 MUTATED GATA3 WILD-TYPE
  NO             59             328
  YES            33             469
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  GATA3 MUTATED                            0                            76
  GATA3 WILD-TYPE                          1                           635
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  GATA3 MUTATED                                6                   0
  GATA3 WILD-TYPE                            166                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  GATA3 MUTATED                       0                                5
  GATA3 WILD-TYPE                     6                               22
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  GATA3 MUTATED                    2              8
  GATA3 WILD-TYPE                 12             32
D3V9, multiclass
                                  clus
vv                                 GATA3 MUTATED GATA3 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA               76             635
  INFILTRATING LOBULAR CARCINOMA               6             166
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             5              22
  MUCINOUS CARCINOMA                           2              12
  OTHER, SPECIFY                               8              32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  GATA3 MUTATED                                  0     9
  GATA3 WILD-TYPE                                1    48
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  GATA3 MUTATED                           9    71
  GATA3 WILD-TYPE                       112   634
D3V11, multiclass
                                  clus
vv                                 GATA3 MUTATED GATA3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        9              48
  BLACK OR AFRICAN AMERICAN                    9             112
  WHITE                                       71             634
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V12, binary
                 cls
clus                0   1
  GATA3 MUTATED     4  78
  GATA3 WILD-TYPE  30 694
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GATA3 MUTATED      4   78
  GATA3 WILD-TYPE   30  694
                        clus
vv                       GATA3 MUTATED GATA3 WILD-TYPE
  HISPANIC OR LATINO                 4              30
  NOT HISPANIC OR LATINO            78             694
[1] 2 2
[1] FALSE

Clustering(4) Variable = MAP3K1 MUTATION ANALYSIS
D4V1, survival
                  sevent
clus2                0   1
  MAP3K1 MUTATED    62   8
  MAP3K1 WILD-TYPE 764 130
  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
              70              894 
  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
               8              130 
$`MAP3K1 MUTATED`
TCGA-BH-A1F5 TCGA-E2-A15O TCGA-A1-A0SG TCGA-A2-A04N TCGA-A2-A0CP TCGA-A2-A0EU 
       89.16        50.79        14.27       143.15        92.48        34.29 
TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YK TCGA-A2-A1G1 TCGA-A2-A259 TCGA-A2-A3Y0 
       25.28        50.47        19.33        19.20        52.47        50.83 
TCGA-A7-A0DB TCGA-A7-A4SB TCGA-A7-A5ZW TCGA-A8-A06P TCGA-A8-A07F TCGA-A8-A082 
       33.11        13.74        10.72        13.02        18.97        18.05 
TCGA-A8-A086 TCGA-A8-A08Z TCGA-A8-A09B TCGA-A8-A09M TCGA-AC-A23H TCGA-AC-A2FE 
       13.02        40.01        12.00        33.07         5.72        86.66 
TCGA-AC-A2FF TCGA-AN-A03X TCGA-AN-A049 TCGA-AN-A0AS TCGA-AN-A0XS TCGA-AO-A0J7 
       90.71         0.33         0.62         0.33         0.33        20.32 
TCGA-AO-A0JF TCGA-B6-A0IM TCGA-B6-A0IO TCGA-B6-A1KI TCGA-BH-A0BO TCGA-BH-A0DT 
       65.10       127.33       165.76        73.51        72.23        79.00 
TCGA-BH-A0DV TCGA-BH-A0DZ TCGA-BH-A0E7 TCGA-BH-A0W5 TCGA-BH-A18G TCGA-BH-A18M 
       67.86        16.27        44.81        42.35         4.90        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A42V TCGA-C8-A12N TCGA-C8-A3M8 TCGA-D8-A1JH 
       37.74        30.28        20.88        11.77        12.95        14.01 
TCGA-D8-A1JU TCGA-D8-A1X6 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A27L TCGA-D8-A3Z6 
       14.70        17.79        27.58        18.15        16.41        18.51 
TCGA-E2-A10A TCGA-E2-A156 TCGA-E2-A15C TCGA-E2-A15G TCGA-E2-A1B4 TCGA-E2-A1BD 
       40.41        23.87        22.82        18.21        33.01        37.25 
TCGA-E9-A1N4 TCGA-E9-A1N9 TCGA-E9-A1R6 TCGA-E9-A1RD TCGA-E9-A22H TCGA-EW-A1J1 
       32.88        36.20        11.15         1.12        40.50        18.90 
TCGA-EW-A1OY TCGA-EW-A1P6 TCGA-JL-A3YX TCGA-OK-A5Q2 
       29.85        18.48        11.57         2.10 

$`MAP3K1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A1BC TCGA-E2-A1L8 TCGA-E2-A1LG 
       10.42        21.14        14.79        16.47        73.64        50.07 
TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A440 
       26.99        15.68        52.96        75.02        85.35        24.95 
TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE 
       25.05        14.79        40.08         8.52        14.37        43.43 
TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM 
       48.10        47.24        20.88        13.68        31.79         7.96 
TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T 
       39.32        18.21        18.02        78.41       121.94        73.84 
TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM 
       87.25       101.98        55.43       136.73        99.12        24.79 
TCGA-A2-A0CO TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
      114.81       107.93        77.19        75.25         5.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 
      107.93        56.81        53.13        67.33        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP 
       61.58        25.22       101.72       134.40        80.28       118.45 
TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EV TCGA-A2-A0EW 
       79.76        74.40        72.00        35.05        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YE 
       20.52        17.46        18.90        20.75        32.55        18.21 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YL TCGA-A2-A0YM 
       21.90        21.67        49.48        18.61        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G6 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F 
       16.47        42.44        17.19        18.15       105.34        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV 
       36.23        39.65        33.93        91.07        29.98        32.75 
TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX 
       56.28        47.31        35.93        50.37         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DC 
       34.29        35.47        30.61        37.45        35.67        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J 
       31.73        20.19        25.15        29.56        23.74        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA 
       11.34        10.59        10.29        13.41        14.70        14.93 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z 
       13.02         1.02        17.98        31.00        26.01         1.02 
TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07G 
       17.03        53.98         9.01        43.00        33.99        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R 
       14.01        12.00        32.05         9.99        10.98         8.98 
TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A085 TCGA-A8-A08A TCGA-A8-A08B 
       24.99         9.99        45.07        36.95         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A095 
       31.00         0.99       112.08        43.00        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09D TCGA-A8-A09N TCGA-A8-A09Q 
       12.00         9.99         9.99        50.04         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       19.04        13.02        21.04         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK 
       38.04        19.23        22.95        73.91        22.26        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       99.35        40.57        60.92        87.12        26.04        74.14 
TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN 
       33.04        19.33        14.66        32.45         6.48        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI 
       14.83        22.19        25.05        14.99        15.48        23.24 
TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03Y TCGA-AN-A041 
       24.79        16.80        14.96        17.42         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.33         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        7.46         0.16         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        7.96         7.00         7.59         7.17         6.90         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        0.33         0.36         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XT 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       81.63        95.70        68.75        69.83        58.95        44.42 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J8 
       32.78        21.40        52.18        26.04        37.48        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE 
       53.03        21.53        50.70        50.86        72.00        76.77 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       62.04        55.33        71.80       115.27       113.62       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03       102.31        98.27        82.68        70.42 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       60.56        53.88        40.57        20.45        97.08        82.62 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       11.51        24.79        26.93       130.09        15.62        32.52 
TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 
       84.10        23.31        64.83        55.86        65.36       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       134.14       125.16       108.36       101.00       103.86 
TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS 
       97.68        96.00        86.07        93.90        99.32        37.81 
TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       41.82        94.29        61.28        86.53        86.43        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
      160.90        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28       112.77        97.84       105.27       102.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
      105.30        50.96        98.76        98.66        89.00        99.62 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       93.30        85.64        71.05        93.83       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       86.53        54.21        63.62        38.17        39.39        40.54 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       33.30        38.96        10.59        77.62       143.38       281.29 
TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
       32.58        11.90       275.87       129.57        50.70        65.52 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IN TCGA-B6-A0IP 
      146.50       112.37       233.62        18.77        84.59       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
       43.59       101.52       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        74.99        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 
       37.74        39.55        39.16        70.22        84.13        51.58 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       51.68        37.22        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       21.70        74.89        61.68        75.48        74.14        76.60 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 
       85.87        77.75        49.94        77.95        74.14        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       46.39        89.06        90.97        81.73        77.98        67.10 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ 
       38.01        29.98        13.91        78.28        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DX TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
        2.56        70.88         4.41        15.68        14.30         9.63 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       52.96        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W7 
       27.25        50.79         5.59        23.93        24.95        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       23.05        32.91        35.93        20.12        90.84        26.66 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       55.63        37.55        66.05         7.36        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       69.93        91.99       113.82        82.85        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 
       55.69        49.58        17.69        25.81        31.53        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       25.08       114.15        33.17        74.73       122.83        33.99 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       63.35        55.00        45.63        72.07        53.98        55.50 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       28.14        26.14        38.60        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A5IZ 
       36.82        36.79        20.12        10.52       110.60        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       23.51        11.93        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.49        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-D8-A13Y TCGA-D8-A13Z 
        9.76        24.56        14.43        33.99        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       18.90        12.03        53.00        18.97        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       20.09        19.40        20.38        21.01        12.20        13.32 
TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XC TCGA-D8-A1XF 
       18.58        16.73        25.74        23.90        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       48.03        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 
       12.53        12.26        33.37        21.67        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       27.52        46.59        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       47.15        44.68        40.96        38.24        38.60        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       75.98        43.33        34.26        32.02        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       18.51        63.62        69.96        23.24        19.43        21.04 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H 
       25.05        23.34        17.29        20.71        21.63        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       32.35        28.50        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       34.82        36.82        34.16        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ 
       35.77        35.24        25.84        18.94         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R7 
       28.27        34.95         2.56         6.12         3.02        48.23 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       45.01        32.09        40.24        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A243 
       39.09        38.37        41.03        41.72        40.73        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J2 TCGA-EW-A1J3 
       12.20        39.72         8.48        18.21        13.25        16.57 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       28.77        25.94        29.95        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       29.82        23.11        30.08         7.86        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
        6.15        13.94        10.52        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        17.52 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
        7.40       109.87        59.57       216.76        79.10        83.34 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
      101.62       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 
       32.75        17.06        15.32        14.70        14.47        27.91 
TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
       22.39        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
            0.33             0.03 
  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
          165.76           282.90 
  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
          23.345           31.180 
[1] "0.3 - 165.8 (23.3)" "0.0 - 282.9 (31.2)"
[1] "hr=" "1"  
D4V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  MAP3K1 MUTATED         8        8        1        1        22        16
  MAP3K1 WILD-TYPE      80       63        5        3       304       211
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  MAP3K1 MUTATED           0         10          1          3        0       0
  MAP3K1 WILD-TYPE         2        127         23         54       15      12
D4V3, multiclass
            clus
vv           MAP3K1 MUTATED MAP3K1 WILD-TYPE
  STAGE I                 8               80
  STAGE IA                8               63
  STAGE IB                1                5
  STAGE II                1                3
  STAGE IIA              22              304
  STAGE IIB              16              211
  STAGE III               0                2
  STAGE IIIA             10              127
  STAGE IIIB              1               23
  STAGE IIIC              3               54
  STAGE IV                0               15
  STAGE X                 0               12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  MAP3K1 MUTATED    26  35   8   2
  MAP3K1 WILD-TYPE 231 529 112  33
D4V4, multiclass
    clus
vv   MAP3K1 MUTATED MAP3K1 WILD-TYPE
  T1             26              231
  T2             35              529
  T3              8              112
  T4              2               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  MAP3K1 MUTATED    32  25   8   4
  MAP3K1 WILD-TYPE 430 300  99  64
D4V5, multiclass
    clus
vv   MAP3K1 MUTATED MAP3K1 WILD-TYPE
  N0             32              430
  N1             25              300
  N2              8               99
  N3              4               64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V6, binary
                  cls
clus                 0   1
  MAP3K1 MUTATED    66   0
  MAP3K1 WILD-TYPE 776  16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K1 MUTATED     66    0
  MAP3K1 WILD-TYPE  776   16
   clus
vv  MAP3K1 MUTATED MAP3K1 WILD-TYPE
  0             66              776
  1              0               16
[1] 2 2
[1] FALSE
D4V7, binary
                  cls
clus                 0   1
  MAP3K1 MUTATED    71   0
  MAP3K1 WILD-TYPE 897   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K1 MUTATED     71    0
  MAP3K1 WILD-TYPE  897    9
        clus
vv       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  FEMALE             71              897
  MALE                0                9
[1] 2 2
[1] FALSE
D4V8, binary
                  cls
clus                 0   1
  MAP3K1 MUTATED    23  40
  MAP3K1 WILD-TYPE 364 462
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K1 MUTATED     23   40
  MAP3K1 WILD-TYPE  364  462
     clus
vv    MAP3K1 MUTATED MAP3K1 WILD-TYPE
  NO              23              364
  YES             40              462
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  MAP3K1 MUTATED                            0                            56
  MAP3K1 WILD-TYPE                          1                           655
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  MAP3K1 MUTATED                                9                   0
  MAP3K1 WILD-TYPE                            163                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  MAP3K1 MUTATED                       0                                3
  MAP3K1 WILD-TYPE                     6                               24
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  MAP3K1 MUTATED                    0              3
  MAP3K1 WILD-TYPE                 14             37
D4V9, multiclass
                                  clus
vv                                 MAP3K1 MUTATED MAP3K1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA                56              655
  INFILTRATING LOBULAR CARCINOMA                9              163
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)              3               24
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                                3               37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MAP3K1 MUTATED                                  0     4
  MAP3K1 WILD-TYPE                                1    53
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  MAP3K1 MUTATED                           7    51
  MAP3K1 WILD-TYPE                       114   654
D4V11, multiclass
                                  clus
vv                                 MAP3K1 MUTATED MAP3K1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         4               53
  BLACK OR AFRICAN AMERICAN                     7              114
  WHITE                                        51              654
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V12, binary
                  cls
clus                 0   1
  MAP3K1 MUTATED     4  53
  MAP3K1 WILD-TYPE  30 719
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K1 MUTATED      4   53
  MAP3K1 WILD-TYPE   30  719
                        clus
vv                       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  HISPANIC OR LATINO                  4               30
  NOT HISPANIC OR LATINO             53              719
[1] 2 2
[1] FALSE

Clustering(5) Variable = CDH1 MUTATION ANALYSIS
D5V1, survival
                sevent
clus2              0   1
  CDH1 MUTATED    95  12
  CDH1 WILD-TYPE 731 126
  CDH1 MUTATED CDH1 WILD-TYPE 
           107            857 
  CDH1 MUTATED CDH1 WILD-TYPE 
            12            126 
$`CDH1 MUTATED`
TCGA-A2-A25A TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A091 TCGA-AC-A3W6 
      107.70        11.28        11.97        11.05        33.01        19.79 
TCGA-AC-A5XS TCGA-AR-A2LL TCGA-AR-A5QM TCGA-E2-A1L8 TCGA-E2-A2P5 TCGA-EW-A1J5 
       19.33        66.15        73.35        73.64        26.99        15.68 
TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A50Y TCGA-A1-A0SE TCGA-A2-A0CK TCGA-A2-A0CO 
       75.02        85.35        25.05        43.43       136.73       114.81 
TCGA-A2-A0CR TCGA-A2-A0EX TCGA-A2-A0SY TCGA-A2-A0T4 TCGA-A2-A0T6 TCGA-A2-A0YD 
      107.93        24.72        44.28        20.52        18.90        25.28 
TCGA-A2-A0YK TCGA-A2-A1FV TCGA-A2-A1G0 TCGA-A2-A3KC TCGA-A2-A4S2 TCGA-A7-A13H 
       19.33        23.47        20.25        36.23        21.14        29.56 
TCGA-A7-A3IZ TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A8-A07B TCGA-A8-A09V TCGA-A8-A09W 
       10.59        13.74        14.66        43.00        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       14.01        13.02        21.04         0.99        27.02        17.03 
TCGA-AC-A23G TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FO TCGA-AC-A3BB TCGA-AC-A3OD 
       73.91        90.71        60.92        74.14        32.45        14.83 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AN-A03Y TCGA-AO-A0J8 
       25.05        14.99        15.48        23.24         0.33        22.36 
TCGA-AO-A0J9 TCGA-AO-A128 TCGA-AR-A1AL TCGA-AR-A1AT TCGA-AR-A24T TCGA-AR-A24X 
       53.03       106.78        97.68        41.82       105.27        98.76 
TCGA-AR-A2LE TCGA-AR-A2LJ TCGA-B6-A0IP TCGA-B6-A0RQ TCGA-B6-A2IU TCGA-B6-A40B 
      166.42        86.53       129.07       140.28       170.17       103.63 
TCGA-B6-A40C TCGA-BH-A0BA TCGA-BH-A0C1 TCGA-BH-A0E9 TCGA-BH-A0HP TCGA-BH-A18F 
       71.15        37.22        46.39        81.83        13.61        32.91 
TCGA-BH-A18P TCGA-BH-A209 TCGA-BH-A2L8 TCGA-C8-A1HO TCGA-C8-A274 TCGA-C8-A3M7 
       30.28       130.16        20.12        12.33        16.70        33.99 
TCGA-D8-A1XO TCGA-D8-A1Y1 TCGA-D8-A27G TCGA-D8-A27I TCGA-D8-A27T TCGA-D8-A27V 
       55.30         9.93        13.45        14.43        13.08        12.53 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-E2-A107 TCGA-E2-A10F TCGA-E2-A1IH TCGA-E2-A1IJ 
       33.37        18.51        34.42        28.87        33.73        28.44 
TCGA-E2-A2P6 TCGA-E9-A2JT TCGA-E9-A3X8 TCGA-EW-A1J2 TCGA-EW-A3E8 TCGA-GI-A2C8 
       34.55         9.47        30.44        13.25        34.03         7.40 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-LQ-A4E4 TCGA-MS-A51U 
       66.38        72.03        13.55        18.12        27.91        22.39 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A66K TCGA-PE-A5DD TCGA-PE-A5DE 
       58.62        34.92        41.92        64.21        86.96 

$`CDH1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A7-A0CD 
       19.20        63.12        36.13        88.60        19.56        38.30 
TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       23.61        31.36        24.26        23.80        21.73        22.32 
TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S 
       53.06        29.03        19.99        15.06        33.01        33.01 
TCGA-A8-A093 TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 
       17.95         1.02        49.05        45.07        29.98        16.57 
TCGA-AC-A5EI TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       14.53        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LR TCGA-B6-A0I8 TCGA-BH-A0B6 
       32.91        98.33        17.23        57.27        24.62        81.63 
TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 
       54.05        32.58        21.44        89.16        10.42        21.14 
TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1LG TCGA-EW-A1P3 TCGA-LL-A440 
       14.79        50.79        16.47        50.07        52.96        24.95 
TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SF TCGA-A1-A0SG 
       14.79        40.08         8.52        14.37        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN 
       47.24        20.88        13.68        31.79         7.96        39.32 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T 
       18.21       143.15        18.02        78.41       121.94        73.84 
TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CP 
       87.25       101.98        55.43        99.12        24.79        92.48 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EY 
       72.00        35.05        34.29        31.82        61.94        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0T0 
       99.19        54.64        27.12        44.88        50.43        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T5 TCGA-A2-A0T7 TCGA-A2-A0YC 
       17.13         8.38        49.84        17.46        20.75        32.55 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       48.46        31.73        23.77        17.36        60.72        22.45 
TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       19.20        16.47        52.47        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU 
      105.34        10.59        39.65        33.93        91.07        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       32.75        56.28        47.31        35.93        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S3 
        7.30        24.39        21.30        23.21        26.96        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA 
       35.31        34.29        35.47        30.61        37.45        35.67 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A26G 
       33.11        29.79        31.73        20.19        25.15        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA 
       20.61        11.34        10.29        13.41        14.70        14.93 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       13.02        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07C TCGA-A8-A07F 
        1.02        17.03        53.98         9.01        33.99        18.97 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 
        8.98        24.99         9.99        45.07        18.05        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I 
       13.02         0.99        38.01        28.96        19.96        12.00 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T 
       37.05         9.99        31.00        31.00         0.99       112.08 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       43.00        40.01        30.97        41.98        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00        50.04        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0AD TCGA-AC-A23C 
        8.98        19.04        12.00        19.04        38.04        19.23 
TCGA-AC-A23E TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
       22.95         5.72        22.26        73.05        99.35        40.57 
TCGA-AC-A2FE TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       86.66        87.12        26.04        33.04        19.33        14.66 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3QP TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU 
        6.48        16.31        22.19        24.79        16.80        14.96 
TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A 
       17.42         0.33         0.23         0.33         0.62         2.96 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        1.78         1.71         9.96         7.36         7.46         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.33         0.33         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV 
        7.00         7.59         7.17         6.90         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL 
        0.36         0.33         0.33         0.33         0.53         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       81.63        95.70        68.75        69.83        58.95        44.42 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       32.78        21.40        52.18        26.04        37.48        20.32 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        65.10 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       62.04        55.33        71.80       115.27       113.62       108.72 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.03       102.31        98.27        82.68        70.42        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       23.31        64.83        55.86        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AN 
      134.14       125.16       108.36       101.00       103.86        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV 
       86.07        93.90        99.32        37.81        94.29        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L 
       86.53        86.43        33.73       160.90        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
      120.33        99.78       118.59         2.76       104.28       112.77 
TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24Z TCGA-AR-A250 
       97.84       102.84       105.30        50.96        98.66        89.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LH 
       99.62        93.30        85.64        71.05        93.83        20.25 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       11.90       275.87       129.57        50.70        65.52       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      162.05       102.77        89.46       282.90       169.51        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.46        18.35        21.01       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.55        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
      101.52        73.51       139.17        37.87         7.07        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       74.99        68.12        18.84        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 
       25.55        63.09        81.44        37.74        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BC TCGA-BH-A0BD 
       70.22        84.13        51.58        51.68        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       43.53        61.51        21.70        74.89        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV 
       75.48        74.14        76.60        85.87        77.75        49.94 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       77.95        74.14        41.75        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        63.32        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       63.39        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       26.50        23.90        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
        2.50        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        4.90        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       37.74        55.63        37.55        66.05         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.16        69.93        91.99       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       12.00        55.69        49.58        17.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48        25.08       114.15        33.17        74.73       122.83 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
       33.99        63.35        55.00        45.63        72.07        53.98 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       55.50        28.14        26.14        38.60        83.31        57.83 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.82        36.79        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V TCGA-C8-A26W 
        0.16        12.03        12.33        12.95        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 
       12.36        12.95        15.45        16.87         0.03         9.76 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       24.56        14.43        12.95        56.81        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        13.97        14.17        13.48        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       17.49        16.50        55.50        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       12.03        53.00        14.01        18.97        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       20.09        19.40        20.38        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        15.22        14.73        21.83 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       14.50        19.92        17.69        16.41        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.64        12.99        15.16        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H 
       15.52        14.24        14.14        17.42        16.04        13.05 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27W TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       12.26        21.67        43.00        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       37.51        40.11        28.44        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1II TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       70.36        33.70        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 
       43.56         8.28        30.61        34.92        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        34.16        36.20        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       41.62        35.77        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A3HO 
        1.94         7.13        24.56        12.33        29.72        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       32.91        30.18        23.90        23.84        26.70         0.79 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       25.81        26.40        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       18.90        16.57        28.77        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA 
       22.09        17.49        17.52       109.87        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
       79.10        83.34        70.85        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      115.69       106.06       101.62       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 
       69.30         2.60        62.47        11.84        11.57        32.75 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-OK-A5Q2 TCGA-OL-A5D6 
       17.06        15.32        14.70        14.47         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.52        31.99        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        47.01 

  CDH1 MUTATED CDH1 WILD-TYPE 
          0.33           0.03 
  CDH1 MUTATED CDH1 WILD-TYPE 
        170.17         282.90 
  CDH1 MUTATED CDH1 WILD-TYPE 
         29.56          31.00 
[1] "0.3 - 170.2 (29.6)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.4"
D5V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  CDH1 MUTATED         9        2        0        0        31        30
  CDH1 WILD-TYPE      79       69        6        4       295       197
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  CDH1 MUTATED           0         16          3         15        0       0
  CDH1 WILD-TYPE         2        121         21         42       15      12
D5V3, multiclass
            clus
vv           CDH1 MUTATED CDH1 WILD-TYPE
  STAGE I               9             79
  STAGE IA              2             69
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA            31            295
  STAGE IIB            30            197
  STAGE III             0              2
  STAGE IIIA           16            121
  STAGE IIIB            3             21
  STAGE IIIC           15             42
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  CDH1 MUTATED    16  56  33   2
  CDH1 WILD-TYPE 241 508  87  33
D5V4, multiclass
    clus
vv   CDH1 MUTATED CDH1 WILD-TYPE
  T1           16            241
  T2           56            508
  T3           33             87
  T4            2             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  CDH1 MUTATED    56  27   8  16
  CDH1 WILD-TYPE 406 298  99  52
D5V5, multiclass
    clus
vv   CDH1 MUTATED CDH1 WILD-TYPE
  N0           56            406
  N1           27            298
  N2            8             99
  N3           16             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V6, binary
                cls
clus               0   1
  CDH1 MUTATED    82   0
  CDH1 WILD-TYPE 760  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH1 MUTATED     82    0
  CDH1 WILD-TYPE  760   16
   clus
vv  CDH1 MUTATED CDH1 WILD-TYPE
  0           82            760
  1            0             16
[1] 2 2
[1] FALSE
D5V7, binary
                cls
clus               0   1
  CDH1 MUTATED   107   0
  CDH1 WILD-TYPE 861   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH1 MUTATED    107    0
  CDH1 WILD-TYPE  861    9
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  FEMALE          107            861
  MALE              0              9
[1] 2 2
[1] FALSE
D5V8, binary
                cls
clus               0   1
  CDH1 MUTATED    38  63
  CDH1 WILD-TYPE 349 439
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH1 MUTATED     38   63
  CDH1 WILD-TYPE  349  439
     clus
vv    CDH1 MUTATED CDH1 WILD-TYPE
  NO            38            349
  YES           63            439
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  CDH1 MUTATED                            0                            13
  CDH1 WILD-TYPE                          1                           698
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  CDH1 MUTATED                               89                   1
  CDH1 WILD-TYPE                             83                   4
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  CDH1 MUTATED                       0                                3
  CDH1 WILD-TYPE                     6                               24
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  CDH1 MUTATED                    0              1
  CDH1 WILD-TYPE                 14             39
D5V9, multiclass
                                  clus
vv                                 CDH1 MUTATED CDH1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA              13            698
  INFILTRATING LOBULAR CARCINOMA             89             83
  MEDULLARY CARCINOMA                         1              4
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            3             24
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              1             39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CDH1 MUTATED                                  0     6
  CDH1 WILD-TYPE                                1    51
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  CDH1 MUTATED                           8    82
  CDH1 WILD-TYPE                       113   623
D5V11, multiclass
                                  clus
vv                                 CDH1 MUTATED CDH1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       6             51
  BLACK OR AFRICAN AMERICAN                   8            113
  WHITE                                      82            623
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V12, binary
                cls
clus               0   1
  CDH1 MUTATED     3  85
  CDH1 WILD-TYPE  31 687
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH1 MUTATED      3   85
  CDH1 WILD-TYPE   31  687
                        clus
vv                       CDH1 MUTATED CDH1 WILD-TYPE
  HISPANIC OR LATINO                3             31
  NOT HISPANIC OR LATINO           85            687
[1] 2 2
[1] FALSE

Clustering(6) Variable = CBFB MUTATION ANALYSIS
D6V1, survival
                sevent
clus2              0   1
  CBFB MUTATED    16   4
  CBFB WILD-TYPE 810 134
  CBFB MUTATED CBFB WILD-TYPE 
            20            944 
  CBFB MUTATED CBFB WILD-TYPE 
             4            134 
$`CBFB MUTATED`
TCGA-BH-A0EA TCGA-A2-A0EO TCGA-A2-A0T5 TCGA-A8-A08T TCGA-A8-A09W TCGA-AO-A128 
       32.58        80.28        17.46       112.08         0.99       106.78 
TCGA-AQ-A1H3 TCGA-AR-A24P TCGA-B6-A0RN TCGA-BH-A1FL TCGA-D8-A1XS TCGA-E2-A153 
       32.52         2.76       263.28        55.00        16.31        23.24 
TCGA-E2-A1L9 TCGA-E9-A1NH TCGA-E9-A1RC TCGA-E9-A249 TCGA-E9-A5UP TCGA-EW-A1IW 
       19.66        18.94        40.24         7.13        26.40        12.20 
TCGA-EW-A1J2 TCGA-GM-A2D9 
       13.25        59.57 

$`CBFB WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A18H TCGA-BH-A1F5 
       73.35        24.62        81.63        54.05        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72       134.40       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T6 
       17.52        17.13         8.38        49.84        20.52        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       19.20        16.47        52.47        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT 
      105.34        10.59        36.23        39.65        33.93        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.83         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ 
       25.15        29.56        23.74        20.61        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC 
       10.29        13.41        14.70        14.93        13.74        14.66 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       13.02        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       43.00        40.01        30.97        41.98        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00        50.04        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
        8.98        19.04        15.02        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD 
       13.02        21.04         0.99        27.02        17.03        38.04 
TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
       19.23        22.95        73.91         5.72        22.26        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       26.04        74.14        33.04        19.33        14.66        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN 
        6.48        16.31        14.83        22.19        25.05        14.99 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y 
       15.48        23.24        24.79        16.80        14.96        17.42 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A 
        0.33         0.33         0.23         0.33         0.62         2.96 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        1.78         1.71         9.96         7.36         7.46         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.33         0.33         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV 
        7.00         7.59         7.17         6.90         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL 
        0.36         0.33         0.33         0.33         0.53         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       81.63        95.70        68.75        69.83        58.95        44.42 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       32.78        21.40        52.18        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       22.36        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        65.10        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
      113.62       108.72       108.03       102.31        98.27        82.68 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       70.42        60.56        53.88        40.57        20.45        97.08 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 
       82.62        11.51        24.79        26.93       130.09        15.62 
TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 
       84.10        23.31        64.83        55.86        65.36       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       134.14       125.16       108.36       101.00       103.86 
TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS 
       97.68        96.00        86.07        93.90        99.32        37.81 
TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       41.82        94.29        61.28        86.53        86.43        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
      160.90        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      104.28       112.77        97.84       105.27       102.84       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
       50.96        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       85.64        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       11.90       275.87       129.57        50.70        65.52       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       52.96        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       110.60        20.88        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.49        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       16.41        15.85        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A154 
       31.96        69.34        18.51        63.62        69.96        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       20.71        21.63        18.21        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        11.05        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       28.50        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       11.08        54.18        60.36        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        52.73        34.55 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 
       43.56         8.28        30.61        34.92        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        34.16        36.20        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NI TCGA-E9-A1QZ 
       41.62        35.77        35.24        25.84         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 
       28.27        34.95         2.56         6.12         3.02        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
       48.23        45.01        32.09         1.12        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
       21.27        46.59        47.64        34.45        32.05        42.25 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       37.74        39.09        38.37        41.03        41.72        40.73 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A24A 
       40.50        20.12         0.69        38.99         1.94        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       12.33        29.72         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J3 TCGA-EW-A1J6 
       39.72         8.48        18.21        18.90        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       19.99         6.15        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
       17.52         7.40       109.87       216.76        79.10        83.34 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
      101.62       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       11.57        32.75        17.06        15.32        14.70        14.47 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       27.91        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE 
       64.21        86.96 

  CBFB MUTATED CBFB WILD-TYPE 
          0.99           0.03 
  CBFB MUTATED CBFB WILD-TYPE 
        263.28         282.90 
  CBFB MUTATED CBFB WILD-TYPE 
        24.820         30.985 
[1] "1.0 - 263.3 (24.8)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.2"
D6V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  CBFB MUTATED         2        2        0        0         8         4
  CBFB WILD-TYPE      86       69        6        4       318       223
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  CBFB MUTATED           0          0          1          3        1       0
  CBFB WILD-TYPE         2        137         23         54       14      12
D6V3, multiclass
            clus
vv           CBFB MUTATED CBFB WILD-TYPE
  STAGE I               2             86
  STAGE IA              2             69
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             8            318
  STAGE IIB             4            223
  STAGE III             0              2
  STAGE IIIA            0            137
  STAGE IIIB            1             23
  STAGE IIIC            3             54
  STAGE IV              1             14
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  CBFB MUTATED     7  14   0   1
  CBFB WILD-TYPE 250 550 120  34
D6V4, multiclass
    clus
vv   CBFB MUTATED CBFB WILD-TYPE
  T1            7            250
  T2           14            550
  T3            0            120
  T4            1             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  CBFB MUTATED    10   8   0   4
  CBFB WILD-TYPE 452 317 107  64
D6V5, multiclass
    clus
vv   CBFB MUTATED CBFB WILD-TYPE
  N0           10            452
  N1            8            317
  N2            0            107
  N3            4             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V6, binary
                cls
clus               0   1
  CBFB MUTATED    18   1
  CBFB WILD-TYPE 824  15
[1] "tbl2"
                cls
clus             [,1] [,2]
  CBFB MUTATED     18    1
  CBFB WILD-TYPE  824   15
   clus
vv  CBFB MUTATED CBFB WILD-TYPE
  0           18            824
  1            1             15
[1] 2 2
[1] FALSE
D6V7, binary
                cls
clus               0   1
  CBFB MUTATED    21   1
  CBFB WILD-TYPE 947   8
[1] "tbl2"
                cls
clus             [,1] [,2]
  CBFB MUTATED     21    1
  CBFB WILD-TYPE  947    8
        clus
vv       CBFB MUTATED CBFB WILD-TYPE
  FEMALE           21            947
  MALE              1              8
[1] 2 2
[1] FALSE
D6V8, binary
                cls
clus               0   1
  CBFB MUTATED     7  10
  CBFB WILD-TYPE 380 492
[1] "tbl2"
                cls
clus             [,1] [,2]
  CBFB MUTATED      7   10
  CBFB WILD-TYPE  380  492
     clus
vv    CBFB MUTATED CBFB WILD-TYPE
  NO             7            380
  YES           10            492
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  CBFB MUTATED                            0                            16
  CBFB WILD-TYPE                          1                           695
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  CBFB MUTATED                                3                   0
  CBFB WILD-TYPE                            169                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  CBFB MUTATED                       0                                1
  CBFB WILD-TYPE                     6                               26
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  CBFB MUTATED                    0              2
  CBFB WILD-TYPE                 14             38
D6V9, multiclass
                                  clus
vv                                 CBFB MUTATED CBFB WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA              16            695
  INFILTRATING LOBULAR CARCINOMA              3            169
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            1             26
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              2             38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CBFB MUTATED                                  0     0
  CBFB WILD-TYPE                                1    57
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  CBFB MUTATED                           1    17
  CBFB WILD-TYPE                       120   688
D6V11, multiclass
                                  clus
vv                                 CBFB MUTATED CBFB WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             57
  BLACK OR AFRICAN AMERICAN                   1            120
  WHITE                                      17            688
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V12, binary
                cls
clus               0   1
  CBFB MUTATED     1  17
  CBFB WILD-TYPE  33 755
[1] "tbl2"
                cls
clus             [,1] [,2]
  CBFB MUTATED      1   17
  CBFB WILD-TYPE   33  755
                        clus
vv                       CBFB MUTATED CBFB WILD-TYPE
  HISPANIC OR LATINO                1             33
  NOT HISPANIC OR LATINO           17            755
[1] 2 2
[1] FALSE

Clustering(7) Variable = PTEN MUTATION ANALYSIS
D7V1, survival
                sevent
clus2              0   1
  PTEN MUTATED    31   4
  PTEN WILD-TYPE 795 134
  PTEN MUTATED PTEN WILD-TYPE 
            35            929 
  PTEN MUTATED PTEN WILD-TYPE 
             4            134 
$`PTEN MUTATED`
TCGA-A7-A26F TCGA-A8-A09E TCGA-AR-A1AM TCGA-AR-A2LL TCGA-LL-A5YP TCGA-A2-A0CS 
       24.26        49.05        98.33        66.15        14.79        77.19 
TCGA-A2-A0SV TCGA-A7-A26G TCGA-AC-A23C TCGA-AC-A2FF TCGA-AC-A3YJ TCGA-AC-A62Y 
       27.12        23.74        19.23        90.71        24.79        17.42 
TCGA-AN-A046 TCGA-AN-A0XW TCGA-AO-A0JA TCGA-AO-A12G TCGA-AR-A1AJ TCGA-AR-A24Q 
        0.33         5.59        21.53        53.88       101.00       104.28 
TCGA-B6-A0IO TCGA-B6-A0WW TCGA-BH-A0E9 TCGA-BH-A0HP TCGA-BH-A1F8 TCGA-BH-A2L8 
      165.76        18.35        81.83        13.61        25.08        20.12 
TCGA-C8-A26Y TCGA-D8-A13Z TCGA-D8-A1J8 TCGA-D8-A1JI TCGA-D8-A27L TCGA-D8-A27V 
       12.95        20.88        14.17        18.97        16.41        12.53 
TCGA-E2-A1IH TCGA-EW-A1OV TCGA-GM-A2DB TCGA-GM-A4E0 TCGA-GM-A5PV 
       33.73        25.94        79.10        72.03        13.55 

$`PTEN WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       38.30        23.61        31.36        23.80        21.73        22.32 
TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       11.28        11.97        11.05        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI TCGA-AC-A5XS 
       45.07        29.98        16.57        19.79        14.53        19.33 
TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AQ-A54O 
       13.71        50.24        17.79         5.65         2.56        32.91 
TCGA-AR-A1AR TCGA-AR-A2LR TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO 
       17.23        57.27        73.35        24.62        81.63        54.05 
TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 
       32.58        21.44        89.16        10.42        21.14        14.79 
TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 
       50.79        16.47        73.64        50.07        26.99        15.68 
TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-OL-A5RU 
       52.96        75.02        85.35        24.95        25.05        40.08 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ 
       20.88        13.68        31.79         7.96        39.32        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U 
      143.15        18.02        78.41       121.94        73.84        87.25 
TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO 
      101.98        55.43       136.73        99.12        24.79       114.81 
TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
       92.48       107.93        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX 
       24.72        63.29        99.19        54.64        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       35.47        30.61        37.45        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26J TCGA-A7-A3IY 
       31.73        20.19        25.15        29.56        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       27.02        17.03        38.04        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FG 
       22.26        73.05        99.35        40.57        86.66        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       87.12        26.04        74.14        33.04        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM 
       32.45         6.48        16.31        14.83        22.19        25.05 
TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AN-A03X 
       14.99        15.48        23.24        16.80        14.96         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.33         0.23         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        9.96         7.36         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.53         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JB 
       26.04        37.48        20.32        22.36        53.03        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27       113.62       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12H 
      102.31        98.27        82.68        70.42        60.56        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J 
       20.45        97.08        82.62        11.51        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX 
      130.09        15.62        32.52        84.10        23.31        64.83 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH 
       55.86        65.36       133.22        83.87       134.14       125.16 
TCGA-AR-A1AI TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      108.36       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        37.81        41.82        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
       99.78       118.59         2.76       112.77        97.84       105.27 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
      102.84       105.30        50.96        98.76        98.66        89.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       99.62        93.30        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       40.54        33.30        38.96        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      281.29        32.58        11.90       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.52       146.50       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH 
       84.59       129.07       140.88       255.68        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
      234.28       263.28       162.05       102.77       140.28        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WX 
      282.90       169.51        97.48       188.68        79.46        21.01 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       58.55        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 
       37.87         7.07        85.35        74.99        68.12        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
      103.63        71.15        62.93        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       63.09        81.44        37.74        39.55        39.16        70.22 
TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       84.13        51.58        51.68        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       43.53        61.51        21.70        74.89        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV 
       75.48        74.14        76.60        85.87        77.75        49.94 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 
       77.95        74.14        41.75        46.39        89.06        90.97 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       81.73        77.98        67.10        38.01        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       78.28        15.65         3.22         2.56        79.00        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       70.88        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       44.81        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       52.96        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
       16.96         2.50        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1FC TCGA-BH-A1FD 
       17.69        25.81        31.53        97.48       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A42T 
       83.31        57.83       130.16        36.82        36.79        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M 
      110.60        20.88        18.64        23.51        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        48.53        12.56        12.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       12.59        12.59        12.92        12.46        12.49        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM 
       10.92        11.34        11.28         0.16        12.03        12.33 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z 
       12.95        12.33        20.25        12.53        12.36        15.45 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B 
       16.87        16.70         0.03         9.76        24.56        14.43 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
       33.99        12.95        56.81        13.25        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       14.17        13.48        19.20        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       48.03        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 
       12.26        33.37        18.51        21.67        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       27.52        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.87        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        75.98        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       69.34        18.51        63.62        69.96        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       20.71        21.63        18.21        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        11.05        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1II 
       28.50        37.25        77.65        37.41        70.36        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        52.73        34.55 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 
       43.56         8.28        30.61        34.92        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        34.16        36.20        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       41.62        35.77        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 
       29.95        29.85        40.41        41.13        39.78        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       23.11        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
        6.15        13.94        10.52        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        17.52 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DF 
        7.40       109.87        59.57       216.76        83.34        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A5PX 
      110.50        38.20        43.73        69.30        66.38        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        58.52        31.99        58.62        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       65.62        41.92        47.01        64.21        86.96 

  PTEN MUTATED PTEN WILD-TYPE 
          0.33           0.03 
  PTEN MUTATED PTEN WILD-TYPE 
        165.76         282.90 
  PTEN MUTATED PTEN WILD-TYPE 
         24.26          31.00 
[1] "0.3 - 165.8 (24.3)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.2"
D7V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  PTEN MUTATED         2        1        0        0        10        10
  PTEN WILD-TYPE      86       70        6        4       316       217
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  PTEN MUTATED           0          4          2          2        2       1
  PTEN WILD-TYPE         2        133         22         55       13      11
D7V3, multiclass
            clus
vv           PTEN MUTATED PTEN WILD-TYPE
  STAGE I               2             86
  STAGE IA              1             70
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA            10            316
  STAGE IIB            10            217
  STAGE III             0              2
  STAGE IIIA            4            133
  STAGE IIIB            2             22
  STAGE IIIC            2             55
  STAGE IV              2             13
  STAGE X               1             11
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  PTEN MUTATED     5  22   5   3
  PTEN WILD-TYPE 252 542 115  32
D7V4, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  T1            5            252
  T2           22            542
  T3            5            115
  T4            3             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  PTEN MUTATED    14  12   6   3
  PTEN WILD-TYPE 448 313 101  65
D7V5, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  N0           14            448
  N1           12            313
  N2            6            101
  N3            3             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V6, binary
                cls
clus               0   1
  PTEN MUTATED    26   2
  PTEN WILD-TYPE 816  14
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED     26    2
  PTEN WILD-TYPE  816   14
   clus
vv  PTEN MUTATED PTEN WILD-TYPE
  0           26            816
  1            2             14
[1] 2 2
[1] FALSE
D7V7, binary
                cls
clus               0   1
  PTEN MUTATED    35   0
  PTEN WILD-TYPE 933   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED     35    0
  PTEN WILD-TYPE  933    9
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE           35            933
  MALE              0              9
[1] 2 2
[1] FALSE
D7V8, binary
                cls
clus               0   1
  PTEN MUTATED    18  16
  PTEN WILD-TYPE 369 486
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED     18   16
  PTEN WILD-TYPE  369  486
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  NO            18            369
  YES           16            486
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  PTEN MUTATED                            0                            20
  PTEN WILD-TYPE                          1                           691
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  PTEN MUTATED                               11                   0
  PTEN WILD-TYPE                            161                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  PTEN MUTATED                       0                                0
  PTEN WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  PTEN MUTATED                    0              4
  PTEN WILD-TYPE                 14             36
D7V9, multiclass
                                  clus
vv                                 PTEN MUTATED PTEN WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA              20            691
  INFILTRATING LOBULAR CARCINOMA             11            161
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              4             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PTEN MUTATED                                  0     2
  PTEN WILD-TYPE                                1    55
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  PTEN MUTATED                           4    28
  PTEN WILD-TYPE                       117   677
D7V11, multiclass
                                  clus
vv                                 PTEN MUTATED PTEN WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       2             55
  BLACK OR AFRICAN AMERICAN                   4            117
  WHITE                                      28            677
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V12, binary
                cls
clus               0   1
  PTEN MUTATED     1  29
  PTEN WILD-TYPE  33 743
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      1   29
  PTEN WILD-TYPE   33  743
                        clus
vv                       PTEN MUTATED PTEN WILD-TYPE
  HISPANIC OR LATINO                1             33
  NOT HISPANIC OR LATINO           29            743
[1] 2 2
[1] FALSE

Clustering(8) Variable = RUNX1 MUTATION ANALYSIS
D8V1, survival
                 sevent
clus2               0   1
  RUNX1 MUTATED    24   4
  RUNX1 WILD-TYPE 802 134
  RUNX1 MUTATED RUNX1 WILD-TYPE 
             28             936 
  RUNX1 MUTATED RUNX1 WILD-TYPE 
              4             134 
$`RUNX1 MUTATED`
TCGA-A7-A26E TCGA-A2-A0CW TCGA-A2-A0EN TCGA-A8-A08Z TCGA-A8-A0A2 TCGA-A8-A0AB 
       31.36       107.93       134.40        40.01        19.04        17.03 
TCGA-A8-A0AD TCGA-AC-A2FB TCGA-AC-A3BB TCGA-AO-A0J8 TCGA-AR-A1AN TCGA-AR-A1AT 
       38.04        40.57        32.45        22.36        96.00        41.82 
TCGA-AR-A24R TCGA-AR-A254 TCGA-B6-A0IH TCGA-BH-A0BM TCGA-BH-A0C1 TCGA-BH-A0C3 
      112.77        85.64       112.37        61.68        46.39        89.06 
TCGA-BH-A0H3 TCGA-BH-A0HP TCGA-BH-A202 TCGA-C8-A12O TCGA-C8-A1HJ TCGA-C8-A274 
       63.39        13.61        26.14        12.66         0.16        16.70 
TCGA-D8-A141 TCGA-E9-A3X8 TCGA-GM-A2D9 TCGA-OL-A5RV 
       20.58        30.44        59.57        34.92 

$`RUNX1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       38.30        23.61        24.26        23.80        21.73        22.32 
TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       11.28        11.97        11.05        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CX TCGA-A2-A0CZ 
       77.19        75.25         5.19        98.99        56.81        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
       80.28       118.45        79.76        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       34.29        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 
       54.64        27.12        44.88        50.43        44.28        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.13         8.38        49.84        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       19.20        16.47        52.47        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT 
      105.34        10.59        36.23        39.65        33.93        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.83         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ 
       25.15        29.56        23.74        20.61        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC 
       10.29        13.41        14.70        14.93        13.74        14.66 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       13.02        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
      112.08        43.00        30.97        41.98        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00        50.04        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-AC-A23C TCGA-AC-A23E 
       13.02        21.04         0.99        27.02        19.23        22.95 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FE 
       73.91         5.72        22.26        73.05        99.35        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       19.33        14.66         6.48        16.31        14.83        22.19 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH 
       25.05        14.99        15.48        23.24        24.79        16.80 
TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 
       14.96        17.42         0.33         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.53         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       37.48        20.32        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       72.00        76.77        65.10        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      115.27       113.62       108.72       106.78       108.03       102.31 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        82.68        70.42        60.56        53.88        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J 
       20.45        97.08        82.62        11.51        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX 
      130.09        15.62        32.52        84.10        23.31        64.83 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH 
       55.86        65.36       133.22        83.87       134.14       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AO TCGA-AR-A1AP 
      108.36       101.00       103.86        97.68        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       99.32        37.81        94.29        61.28        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       33.73       160.90        50.89        94.22       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
      118.59         2.76       104.28        97.84       105.27       102.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
      105.30        50.96        98.76        98.66        89.00        99.62 
TCGA-AR-A252 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       93.30        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       11.90       275.87       129.57        50.70        65.52       146.50 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       61.51        21.70        74.89        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        85.87        77.75        49.94        77.95        74.14 
TCGA-BH-A0C0 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       41.75        90.97        81.73        77.98        67.10        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       29.98        13.91        78.28        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       79.00        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30         9.63        44.81        81.83        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H5 TCGA-BH-A0H6 
       63.32        30.35        10.78        15.16        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI 
       23.08        41.00        52.96        26.50        23.90        20.38 
TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0HU 
        5.85         2.37        16.96         2.50        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       51.32        27.25        50.79         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       42.35        44.81        23.05        32.91         4.90        35.93 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
       20.12        90.84        26.66        72.56        37.74        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       55.63        37.55        66.05         7.36        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       69.93        91.99       113.82        82.85        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 
       55.69        49.58        17.69        25.81        31.53        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       25.08       114.15        33.17        74.73       122.83        33.99 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       63.35        55.00        45.63        72.07        53.98        55.50 
TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       28.14        38.60        83.31        57.83       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.79        20.12        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12P TCGA-C8-A12Q 
       23.51        11.93        11.77        11.77        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HK 
       12.49        12.33        10.92        11.34        11.28        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       12.95        15.45        16.87         0.03         9.76        24.56 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       14.43        33.99        12.95        56.81        20.88        13.25 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 
       13.97        14.17        13.48        19.20        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF 
       16.50        55.50        15.78        18.15        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL 
       53.00        14.01        18.97        20.09        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       19.40        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA 
       18.58        17.79        16.73        25.74        23.90        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK 
       18.15        12.39        15.22        14.73        21.83        14.50 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       19.92        17.69        55.30        16.41        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.64        12.99        15.16        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       15.52         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43        48.03        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
       17.06         1.61        10.09        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       33.37        18.51        21.67        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       46.59        40.41        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       47.15        44.68        40.96        38.24        38.60        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       75.98        43.33        34.26        32.02        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       18.51        63.62        69.96        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        25.05        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       20.58        11.05        19.56        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       76.57        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       37.25        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        52.73        34.55 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 
       43.56         8.28        30.61        34.92        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        34.16        36.20        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       41.62        35.77        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       38.07        32.91        30.18        23.90        23.84        26.70 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
        0.79        25.81        26.40        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV 
       18.21        18.90        13.25        16.57        28.77        25.94 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 
       29.95        29.85        40.41        41.13        39.78        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       23.11        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
        6.15        13.94        10.52        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        17.52 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF 
        7.40       109.87       216.76        79.10        83.34        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      110.50        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       13.55        18.12         2.60        62.47        11.84        11.57 
TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 
       32.75        17.06        15.32        14.70        14.47        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       22.39         2.10        36.30        58.52        31.99        58.62 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  RUNX1 MUTATED RUNX1 WILD-TYPE 
           0.16            0.03 
  RUNX1 MUTATED RUNX1 WILD-TYPE 
          134.4           282.9 
  RUNX1 MUTATED RUNX1 WILD-TYPE 
         39.025          30.230 
[1] "0.2 - 134.4 (39.0)" "0.0 - 282.9 (30.2)"
[1] "hr=" "1.3"
D8V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  RUNX1 MUTATED         4        0        0        1        10         4
  RUNX1 WILD-TYPE      84       71        6        3       316       223
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  RUNX1 MUTATED           0          7          0          1        0       0
  RUNX1 WILD-TYPE         2        130         24         56       15      12
D8V3, multiclass
            clus
vv           RUNX1 MUTATED RUNX1 WILD-TYPE
  STAGE I                4              84
  STAGE IA               0              71
  STAGE IB               0               6
  STAGE II               1               3
  STAGE IIA             10             316
  STAGE IIB              4             223
  STAGE III              0               2
  STAGE IIIA             7             130
  STAGE IIIB             0              24
  STAGE IIIC             1              56
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  RUNX1 MUTATED     6  16   6   1
  RUNX1 WILD-TYPE 251 548 114  34
D8V4, multiclass
    clus
vv   RUNX1 MUTATED RUNX1 WILD-TYPE
  T1             6             251
  T2            16             548
  T3             6             114
  T4             1              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  RUNX1 MUTATED    16   6   5   2
  RUNX1 WILD-TYPE 446 319 102  66
D8V5, multiclass
    clus
vv   RUNX1 MUTATED RUNX1 WILD-TYPE
  N0            16             446
  N1             6             319
  N2             5             102
  N3             2              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V6, binary
                 cls
clus                0   1
  RUNX1 MUTATED    25   0
  RUNX1 WILD-TYPE 817  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUNX1 MUTATED     25    0
  RUNX1 WILD-TYPE  817   16
   clus
vv  RUNX1 MUTATED RUNX1 WILD-TYPE
  0            25             817
  1             0              16
[1] 2 2
[1] FALSE
D8V7, binary
                 cls
clus                0   1
  RUNX1 MUTATED    29   0
  RUNX1 WILD-TYPE 939   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUNX1 MUTATED     29    0
  RUNX1 WILD-TYPE  939    9
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  FEMALE            29             939
  MALE               0               9
[1] 2 2
[1] FALSE
D8V8, binary
                 cls
clus                0   1
  RUNX1 MUTATED     8  17
  RUNX1 WILD-TYPE 379 485
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUNX1 MUTATED      8   17
  RUNX1 WILD-TYPE  379  485
     clus
vv    RUNX1 MUTATED RUNX1 WILD-TYPE
  NO              8             379
  YES            17             485
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  RUNX1 MUTATED                            0                            14
  RUNX1 WILD-TYPE                          1                           697
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  RUNX1 MUTATED                               13                   0
  RUNX1 WILD-TYPE                            159                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  RUNX1 MUTATED                       0                                2
  RUNX1 WILD-TYPE                     6                               25
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  RUNX1 MUTATED                    0              0
  RUNX1 WILD-TYPE                 14             40
D8V9, multiclass
                                  clus
vv                                 RUNX1 MUTATED RUNX1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA               14             697
  INFILTRATING LOBULAR CARCINOMA              13             159
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             2              25
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               0              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  RUNX1 MUTATED                                  0     3
  RUNX1 WILD-TYPE                                1    54
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  RUNX1 MUTATED                           2    19
  RUNX1 WILD-TYPE                       119   686
D8V11, multiclass
                                  clus
vv                                 RUNX1 MUTATED RUNX1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        3              54
  BLACK OR AFRICAN AMERICAN                    2             119
  WHITE                                       19             686
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V12, binary
                 cls
clus                0   1
  RUNX1 MUTATED     1  19
  RUNX1 WILD-TYPE  33 753
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUNX1 MUTATED      1   19
  RUNX1 WILD-TYPE   33  753
                        clus
vv                       RUNX1 MUTATED RUNX1 WILD-TYPE
  HISPANIC OR LATINO                 1              33
  NOT HISPANIC OR LATINO            19             753
[1] 2 2
[1] FALSE

Clustering(9) Variable = MLL3 MUTATION ANALYSIS
D9V1, survival
                sevent
clus2              0   1
  MLL3 MUTATED    51  18
  MLL3 WILD-TYPE 775 120
  MLL3 MUTATED MLL3 WILD-TYPE 
            69            895 
  MLL3 MUTATED MLL3 WILD-TYPE 
            18            120 
$`MLL3 MUTATED`
TCGA-A8-A07E TCGA-B6-A0I8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-LL-A50Y 
       19.99        24.62        50.07        26.99        15.68        25.05 
TCGA-A1-A0SF TCGA-A1-A0SI TCGA-A2-A0CS TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN 
       48.10        20.88        77.19        61.58       101.72       134.40 
TCGA-A2-A0SV TCGA-A2-A0YT TCGA-A2-A259 TCGA-A2-A3KC TCGA-A7-A3RF TCGA-A7-A4SD 
       27.12        23.77        52.47        36.23        13.41        14.50 
TCGA-A7-A5ZW TCGA-A8-A06P TCGA-A8-A06X TCGA-A8-A07R TCGA-A8-A07Z TCGA-A8-A08P 
       10.72        13.02        31.00         8.98        45.07        31.00 
TCGA-A8-A0A6 TCGA-AC-A23H TCGA-AC-A2QI TCGA-AC-A5EH TCGA-AN-A046 TCGA-AN-A0XP 
       21.04         5.72        19.33        16.80         0.33         0.30 
TCGA-AN-A0XV TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A125 TCGA-AO-A128 TCGA-AQ-A1H2 
        5.33        76.77        65.10       113.62       106.78        15.62 
TCGA-AR-A0TX TCGA-AR-A0U0 TCGA-AR-A0U2 TCGA-AR-A24N TCGA-AR-A24S TCGA-B6-A0IJ 
       64.83        65.36        83.87        99.78        97.84       233.62 
TCGA-B6-A0IP TCGA-B6-A0RP TCGA-B6-A0WV TCGA-B6-A0X4 TCGA-B6-A408 TCGA-BH-A0BW 
      129.07       102.77        79.46        28.27        68.12        77.95 
TCGA-BH-A0DE TCGA-BH-A0HN TCGA-BH-A0HQ TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A1ES 
       77.98        16.96        36.85        37.74        30.28       113.82 
TCGA-BH-A1EY TCGA-C8-A12N TCGA-C8-A26Y TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A1JP 
       17.69        11.77        12.95        33.99        12.95        21.01 
TCGA-D8-A1JT TCGA-D8-A1X6 TCGA-D8-A27P TCGA-E2-A1L9 TCGA-E9-A1N8 TCGA-E9-A226 
       13.32        17.79         1.61        19.66        34.16        34.45 
TCGA-EW-A1OY TCGA-OL-A5RX TCGA-OL-A66H 
       29.85        28.87        26.70 

$`MLL3 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 TCGA-C8-A1HL 
       81.63        54.05        32.58        21.44        89.16        10.42 
TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 TCGA-EW-A1P3 
       21.14        14.79        50.79        16.47        73.64        52.96 
TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       75.02        85.35        24.95        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SJ TCGA-A1-A0SK 
       14.37        43.43        14.27        47.24        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        39.32        18.21       143.15        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
      121.94        73.84        87.25       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CT 
       99.12        24.79       114.81        92.48       107.93        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 
        5.19        98.99       107.93        56.81        53.13        67.33 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D4 TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       34.55        33.76        25.22        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX 
       24.72        63.29        99.19        54.64        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       48.46        31.73        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       20.25        19.20        16.47        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU 
      105.34        10.59        39.65        33.93        91.07        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       32.75        56.28        47.31        35.93        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        35.31        34.29        35.47        30.61        37.45 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F 
       35.67        33.11        29.79        31.73        20.19        25.15 
TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       29.56        23.74        20.61        11.34        10.59        10.29 
TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SE TCGA-A7-A4SF 
       14.70        14.93        13.74        14.66        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06Y 
       14.73        12.10        13.02         1.02        17.98        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 
       10.98        24.99         9.99        18.05        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
        0.99        38.01        28.96        19.96        12.00        37.05 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
        9.99        31.00         0.99       112.08        43.00        40.01 
TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       30.97        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       50.04        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
        0.99        27.02        17.03        38.04        19.23        22.95 
TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
       73.91        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XU 
       25.05        14.99        15.48        23.24        24.79        14.96 
TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A 
       17.42         0.33         0.33         0.23         0.62         2.96 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        1.78         1.71         9.96         7.36         7.46         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.33         0.33         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV 
        7.00         7.59         7.17         6.90         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL 
        0.36         0.33         0.33         0.33         0.53         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU 
        0.33        12.33         0.33         0.33         0.33         0.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        5.59        80.28        61.35        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       68.75        69.83        58.95        44.42        32.78        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       52.18        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JJ TCGA-AO-A0JL 
       21.53        50.70        50.86        72.00        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
       71.80       115.27       108.72       108.03       102.31        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       97.08        82.62        11.51        24.79        26.93       130.09 
TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TY TCGA-AR-A0U1 TCGA-AR-A0U3 
       32.52        84.10        23.31        55.86       133.22       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
       94.22       120.33       118.59         2.76       104.28       112.77 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       89.00        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        54.21        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
      143.38       281.29        32.58        11.90       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM 
       50.70        65.52       146.50       112.37        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH 
       84.59       165.76       140.88       255.68        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      234.28       263.28       162.05       140.28        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
      169.51        97.48       188.68        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      206.86       129.70       245.10        68.94        58.55        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
       85.35        74.99        18.84       103.63        71.15        62.93 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 
       59.84        20.45        25.55        63.09        81.44        37.74 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 
       39.55        39.16        70.22        84.13        51.58        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ 
       37.22        32.02        18.21        43.53        61.51        21.70 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       74.89        61.68        72.23        75.48        74.14        76.60 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       85.87        77.75        49.94        74.14        41.75        46.39 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       89.06        90.97        81.73        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        78.28        15.65         3.22         2.56        79.00 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        70.88        16.27         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
        9.63        44.81        81.83        24.49        31.00        63.32 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        63.39        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI 
       23.08        41.00        52.96        26.50        23.90        20.38 
TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW 
        5.85         2.37         2.50        13.61        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       90.84        26.66        72.56        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ET 
        7.36        51.39        51.16        69.93        91.99        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 
       42.28        12.00        55.69        49.58        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48        25.08       114.15        33.17        74.73       122.83 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
       33.99        63.35        55.00        45.63        72.07        53.98 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       55.50        28.14        26.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        36.82        36.79        20.12        10.52       110.60 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12O 
       20.88        18.64        23.51        11.93        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       48.53        12.56        12.16        13.51        12.59        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92        12.46        12.49        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
       11.28         0.16        12.03        12.33        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       20.25        12.53        12.36        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-D8-A13Y TCGA-D8-A13Z 
        0.03         9.76        24.56        14.43        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS TCGA-D8-A1JU 
       20.12        20.09        19.40        20.38        12.20        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       18.58        16.73        25.74        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       12.39        15.22        14.73        21.83        14.50        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       17.69        55.30        16.41        15.85        16.31        16.64 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 
       12.99        15.16        43.04        16.54        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
        9.93        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       13.05        14.43        48.03        16.41        13.48        17.06 
TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 
       10.09        13.08        12.53        12.26        33.37        18.51 
TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       21.67        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O 
       37.51        40.11        28.44        28.87        47.15        44.68 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       40.96        38.24        38.60        33.17        75.98        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       34.26        32.02        31.96        69.34        18.51        63.62 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 
       69.96        23.24        19.43        21.04        23.87        25.05 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G 
       23.34        22.82        17.29        20.71        21.63        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        55.63        53.92         9.04        20.58        11.05 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 
       19.56        56.94        14.07        51.39        76.57        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE 
       87.22        33.01        32.35        28.50        37.25        77.65 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.41        70.36        33.73        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
        3.88        22.19        60.99        11.08        54.18        60.36 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       24.59        75.81        28.90       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        52.73        34.55        43.56         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N9 
       34.92        38.76        34.82        32.88        36.82        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02        11.15        48.23        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       40.24         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       47.64        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW 
       23.84        26.70         0.79        25.81        26.40        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       28.77        25.94        29.95        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       19.99         6.15        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.52         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.84        11.57        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RY TCGA-OL-A5RZ 
       31.99        58.62        34.92        36.36        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD 
       20.38        23.47        65.62        41.92        47.01        64.21 
TCGA-PE-A5DE 
       86.96 

  MLL3 MUTATED MLL3 WILD-TYPE 
          0.30           0.03 
  MLL3 MUTATED MLL3 WILD-TYPE 
        233.62         282.90 
  MLL3 MUTATED MLL3 WILD-TYPE 
         29.85          31.00 
[1] "0.3 - 233.6 (29.9)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.8"
D9V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  MLL3 MUTATED         5        8        1        0        24        11
  MLL3 WILD-TYPE      83       63        5        4       302       216
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  MLL3 MUTATED           0         10          2          4        2       2
  MLL3 WILD-TYPE         2        127         22         53       13      10
D9V3, multiclass
            clus
vv           MLL3 MUTATED MLL3 WILD-TYPE
  STAGE I               5             83
  STAGE IA              8             63
  STAGE IB              1              5
  STAGE II              0              4
  STAGE IIA            24            302
  STAGE IIB            11            216
  STAGE III             0              2
  STAGE IIIA           10            127
  STAGE IIIB            2             22
  STAGE IIIC            4             53
  STAGE IV              2             13
  STAGE X               2             10
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  MLL3 MUTATED    20  40   6   4
  MLL3 WILD-TYPE 237 524 114  31
D9V4, multiclass
    clus
vv   MLL3 MUTATED MLL3 WILD-TYPE
  T1           20            237
  T2           40            524
  T3            6            114
  T4            4             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  MLL3 MUTATED    36  15  11   6
  MLL3 WILD-TYPE 426 310  96  62
D9V5, multiclass
    clus
vv   MLL3 MUTATED MLL3 WILD-TYPE
  N0           36            426
  N1           15            310
  N2           11             96
  N3            6             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V6, binary
                cls
clus               0   1
  MLL3 MUTATED    59   2
  MLL3 WILD-TYPE 783  14
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLL3 MUTATED     59    2
  MLL3 WILD-TYPE  783   14
   clus
vv  MLL3 MUTATED MLL3 WILD-TYPE
  0           59            783
  1            2             14
[1] 2 2
[1] FALSE
D9V7, binary
                cls
clus               0   1
  MLL3 MUTATED    70   0
  MLL3 WILD-TYPE 898   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLL3 MUTATED     70    0
  MLL3 WILD-TYPE  898    9
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  FEMALE           70            898
  MALE              0              9
[1] 2 2
[1] FALSE
D9V8, binary
                cls
clus               0   1
  MLL3 MUTATED    32  32
  MLL3 WILD-TYPE 355 470
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLL3 MUTATED     32   32
  MLL3 WILD-TYPE  355  470
     clus
vv    MLL3 MUTATED MLL3 WILD-TYPE
  NO            32            355
  YES           32            470
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  MLL3 MUTATED                            0                            52
  MLL3 WILD-TYPE                          1                           659
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  MLL3 MUTATED                               12                   0
  MLL3 WILD-TYPE                            160                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  MLL3 MUTATED                       0                                2
  MLL3 WILD-TYPE                     6                               25
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  MLL3 MUTATED                    2              2
  MLL3 WILD-TYPE                 12             38
D9V9, multiclass
                                  clus
vv                                 MLL3 MUTATED MLL3 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA              52            659
  INFILTRATING LOBULAR CARCINOMA             12            160
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            2             25
  MUCINOUS CARCINOMA                          2             12
  OTHER, SPECIFY                              2             38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MLL3 MUTATED                                  0     4
  MLL3 WILD-TYPE                                1    53
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  MLL3 MUTATED                          14    43
  MLL3 WILD-TYPE                       107   662
D9V11, multiclass
                                  clus
vv                                 MLL3 MUTATED MLL3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       4             53
  BLACK OR AFRICAN AMERICAN                  14            107
  WHITE                                      43            662
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V12, binary
                cls
clus               0   1
  MLL3 MUTATED     1  55
  MLL3 WILD-TYPE  33 717
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLL3 MUTATED      1   55
  MLL3 WILD-TYPE   33  717
                        clus
vv                       MLL3 MUTATED MLL3 WILD-TYPE
  HISPANIC OR LATINO                1             33
  NOT HISPANIC OR LATINO           55            717
[1] 2 2
[1] FALSE

Clustering(10) Variable = CDKN1B MUTATION ANALYSIS
D10V1, survival
                  sevent
clus2                0   1
  CDKN1B MUTATED     7   2
  CDKN1B WILD-TYPE 819 136
  CDKN1B MUTATED CDKN1B WILD-TYPE 
               9              955 
  CDKN1B MUTATED CDKN1B WILD-TYPE 
               2              136 
$`CDKN1B MUTATED`
TCGA-A8-A07E TCGA-BH-A0B6 TCGA-A2-A0CS TCGA-A8-A092 TCGA-AQ-A1H3 TCGA-BH-A0B5 
       19.99        81.63        77.19        30.97        32.52        70.22 
TCGA-BH-A0W4 TCGA-BH-A1FJ TCGA-PE-A5DE 
       24.95        63.35        86.96 

$`CDKN1B WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 TCGA-C8-A1HL 
       24.62        54.05        32.58        21.44        89.16        10.42 
TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 TCGA-E2-A1LG 
       21.14        14.79        50.79        16.47        73.64        50.07 
TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A440 
       26.99        15.68        52.96        75.02        85.35        24.95 
TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE 
       25.05        14.79        40.08         8.52        14.37        43.43 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       48.10        14.27        47.24        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        39.32        18.21       143.15        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
      121.94        73.84        87.25       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CT 
       99.12        24.79       114.81        92.48       107.93        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 
        5.19        98.99       107.93        56.81        53.13        67.33 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       34.55        33.76        61.58        25.22       101.72       134.40 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
       80.28       118.45        79.76        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       34.29        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 
       54.64        27.12        44.88        50.43        44.28        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.13         8.38        49.84        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       19.20        16.47        52.47        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT 
      105.34        10.59        36.23        39.65        33.93        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.83         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ 
       25.15        29.56        23.74        20.61        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC 
       10.29        13.41        14.70        14.93        13.74        14.66 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       13.02        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
      112.08        43.00        40.01        41.98        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00        50.04        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       19.04        13.02        21.04         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       38.04        19.23        22.95        73.91         5.72        22.26 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
       73.05        99.35        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       87.12        26.04        74.14        33.04        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM 
       32.45         6.48        16.31        14.83        22.19        25.05 
TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU 
       14.99        15.48        23.24        24.79        16.80        14.96 
TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
       17.42         0.33         0.33         0.23         0.33         0.62 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        2.96         1.78         1.71         9.96         7.36         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        0.16         0.33         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        7.96         7.00         7.59         7.17         6.90         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        0.33         0.36         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        69.83        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       44.42        32.78        21.40        52.18        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       72.00        76.77        65.10        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      115.27       113.62       108.72       106.78       108.03       102.31 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        82.68        70.42        60.56        53.88        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J 
       20.45        97.08        82.62        11.51        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY 
      130.09        15.62        84.10        23.31        64.83        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        37.81        41.82        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       89.00        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        54.21        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
      143.38       281.29        32.58        11.90       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
       50.70        65.52       146.50       112.37       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      127.33        84.59       165.76       129.07       140.88       255.68 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
       68.45       212.25       234.28       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.28        89.46       282.90       169.51        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 
       79.46        18.35        21.01       113.79       206.86       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF 
      245.10        28.27        68.94        58.55        43.59       101.52 
TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
       73.51       139.17       170.17        37.87         7.07        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
       74.99        68.12        18.84       103.63        71.15        62.93 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 
       59.84        20.45        25.55        63.09        81.44        37.74 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.55        39.16        84.13        51.58        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        72.23        75.48        74.14        76.60        85.87 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       77.75        49.94        77.95        74.14        41.75        46.39 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        81.73        77.98        67.10        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       29.98        13.91        78.28        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       79.00        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30         9.63        44.81        81.83        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       63.32        30.35        10.78        15.16        63.39        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF 
       24.56        23.08        41.00        52.96        26.50        23.90 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP 
       20.38         5.85         2.37        16.96         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       36.85        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       23.93        42.35        44.81        23.05        32.91         4.90 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
       35.93        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       30.28        55.63        37.55        66.05         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.16        69.93        91.99       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       12.00        55.69        49.58        17.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48        25.08       114.15        33.17        74.73       122.83 
TCGA-BH-A1FH TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       33.99        55.00        45.63        72.07        53.98        55.50 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       28.14        26.14        38.60        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       36.82        36.79        20.12        10.52       110.60        20.88 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       18.64        23.51        11.93        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       48.53        12.56        12.16        13.51        12.59        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92        12.46        12.49        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
       11.28         0.16        12.03        12.33        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       20.25        12.53        12.36        12.95        15.45        16.87 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
       16.70         0.03         9.76        24.56        14.43        33.99 
TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
       12.95        56.81        20.88        13.25        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA 
       14.17        13.48        19.20        14.17        17.49        16.50 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG 
       55.50        15.78        18.15        18.90        12.03        53.00 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       14.01        18.97        20.09        20.12        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 
       20.38        21.01        12.20        13.32        14.70        18.58 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       17.79        16.73        25.74        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       12.39        15.22        14.73        21.83        14.50        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       17.69        55.30        16.41        15.85        16.31        16.64 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 
       12.99        15.16        43.04        16.54        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
        9.93        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       13.05        14.43        48.03        16.41        13.48        17.06 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        1.61        10.09        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 
       18.51        21.67        43.00        34.42        27.52        46.59 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       40.41        37.51        40.11        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T 
       44.68        40.96        38.24        38.60        33.17        75.98 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       43.33        34.26        32.02        31.96        69.34        18.51 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       63.62        69.96        23.24        19.43        21.04        23.87 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       25.05        23.34        22.82        17.29        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        55.63        53.92         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ 
       11.05        19.56        56.94        14.07        51.39        76.57 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD 
       53.62        87.22        33.01        32.35        28.50        37.25 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ 
       77.65        37.41        70.36        33.73        33.70        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       59.18         3.88        22.19        60.99        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH 
       60.36        19.66        24.59        75.81        28.90       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX 
      102.61         8.75        43.04        52.73        34.55        43.56 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 
        8.28        30.61        34.92        38.76        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       36.82        34.16        36.20        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ 
       35.77        35.24        25.84        18.94         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 
       28.27        34.95         2.56         6.12         3.02        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE 
       48.23        45.01        32.09        40.24         1.12        46.65 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
        6.58        21.27        46.59        47.64        34.45        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
       42.25        37.74        39.09        38.37        41.03        41.72 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 
       40.73        40.50        20.12         0.69        38.99         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        7.13        24.56        12.33        29.72         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       32.91        30.18        30.44        23.90        23.84        26.70 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
        0.79        25.81        26.40        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV 
       18.21        18.90        13.25        16.57        28.77        25.94 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 
       29.95        29.85        40.41        41.13        39.78        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       23.11        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
        6.15        13.94        10.52        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        17.52 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
        7.40       109.87        59.57       216.76        79.10        83.34 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
      101.62       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       11.57        32.75        17.06        15.32        14.70        14.47 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       27.91        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DD 
       64.21 

  CDKN1B MUTATED CDKN1B WILD-TYPE 
           19.99             0.03 
  CDKN1B MUTATED CDKN1B WILD-TYPE 
           86.96           282.90 
  CDKN1B MUTATED CDKN1B WILD-TYPE 
           63.35            30.44 
[1] "20.0 - 87.0 (63.4)" "0.0 - 282.9 (30.4)"
[1] "hr=" "1.3"
D10V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  CDKN1B MUTATED         1        0        0        0         2         1
  CDKN1B WILD-TYPE      87       71        6        4       324       226
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  CDKN1B MUTATED           0          3          0          1        1       1
  CDKN1B WILD-TYPE         2        134         24         56       14      11
D10V3, multiclass
            clus
vv           CDKN1B MUTATED CDKN1B WILD-TYPE
  STAGE I                 1               87
  STAGE IA                0               71
  STAGE IB                0                6
  STAGE II                0                4
  STAGE IIA               2              324
  STAGE IIB               1              226
  STAGE III               0                2
  STAGE IIIA              3              134
  STAGE IIIB              0               24
  STAGE IIIC              1               56
  STAGE IV                1               14
  STAGE X                 1               11
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  CDKN1B MUTATED     1   5   2   2
  CDKN1B WILD-TYPE 256 559 118  33
D10V4, multiclass
    clus
vv   CDKN1B MUTATED CDKN1B WILD-TYPE
  T1              1              256
  T2              5              559
  T3              2              118
  T4              2               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  CDKN1B MUTATED     4   1   2   3
  CDKN1B WILD-TYPE 458 324 105  65
D10V5, multiclass
    clus
vv   CDKN1B MUTATED CDKN1B WILD-TYPE
  N0              4              458
  N1              1              324
  N2              2              105
  N3              3               65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V6, binary
                  cls
clus                 0   1
  CDKN1B MUTATED     7   1
  CDKN1B WILD-TYPE 835  15
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN1B MUTATED      7    1
  CDKN1B WILD-TYPE  835   15
   clus
vv  CDKN1B MUTATED CDKN1B WILD-TYPE
  0              7              835
  1              1               15
[1] 2 2
[1] FALSE
D10V7, binary
                  cls
clus                 0   1
  CDKN1B MUTATED    10   0
  CDKN1B WILD-TYPE 958   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN1B MUTATED     10    0
  CDKN1B WILD-TYPE  958    9
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  FEMALE             10              958
  MALE                0                9
[1] 2 2
[1] FALSE
D10V8, binary
                  cls
clus                 0   1
  CDKN1B MUTATED     2   6
  CDKN1B WILD-TYPE 385 496
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN1B MUTATED      2    6
  CDKN1B WILD-TYPE  385  496
     clus
vv    CDKN1B MUTATED CDKN1B WILD-TYPE
  NO               2              385
  YES              6              496
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  CDKN1B MUTATED                            0                             7
  CDKN1B WILD-TYPE                          1                           704
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  CDKN1B MUTATED                                3                   0
  CDKN1B WILD-TYPE                            169                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  CDKN1B MUTATED                       0                                0
  CDKN1B WILD-TYPE                     6                               27
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  CDKN1B MUTATED                    0              0
  CDKN1B WILD-TYPE                 14             40
D10V9, multiclass
                                  clus
vv                                 CDKN1B MUTATED CDKN1B WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA                 7              704
  INFILTRATING LOBULAR CARCINOMA                3              169
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)              0               27
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                                0               40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CDKN1B MUTATED                                  0     0
  CDKN1B WILD-TYPE                                1    57
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  CDKN1B MUTATED                           0     7
  CDKN1B WILD-TYPE                       121   698
D10V11, multiclass
                                  clus
vv                                 CDKN1B MUTATED CDKN1B WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               57
  BLACK OR AFRICAN AMERICAN                     0              121
  WHITE                                         7              698
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V12, binary
                  cls
clus                 0   1
  CDKN1B MUTATED     0   6
  CDKN1B WILD-TYPE  34 766
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN1B MUTATED      0    6
  CDKN1B WILD-TYPE   34  766
                        clus
vv                       CDKN1B MUTATED CDKN1B WILD-TYPE
  HISPANIC OR LATINO                  0               34
  NOT HISPANIC OR LATINO              6              766
[1] 2 2
[1] FALSE

Clustering(11) Variable = MAP2K4 MUTATION ANALYSIS
D11V1, survival
                  sevent
clus2                0   1
  MAP2K4 MUTATED    26   6
  MAP2K4 WILD-TYPE 800 132
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
              32              932 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               6              132 
$`MAP2K4 MUTATED`
TCGA-A2-A1G4 TCGA-A7-A26H TCGA-A8-A093 TCGA-BH-A0B6 TCGA-E2-A1BC TCGA-A2-A1G0 
       19.56        23.80        17.95        81.63        16.47        20.25 
TCGA-A8-A07Z TCGA-AC-A23E TCGA-AN-A0XR TCGA-AO-A03T TCGA-AO-A0JF TCGA-AR-A1AS 
       45.07        22.95         0.33        69.83        65.10        37.81 
TCGA-AR-A1AU TCGA-B6-A0IB TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RV TCGA-B6-A0WZ 
       94.29       129.57        68.45       212.25       169.51       206.86 
TCGA-B6-A0X4 TCGA-BH-A0DP TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0HA TCGA-BH-A0W7 
       28.27        15.65        63.32        30.35        52.96        44.81 
TCGA-BH-A1EY TCGA-BH-A204 TCGA-C8-A1HO TCGA-D8-A1XY TCGA-D8-A1Y1 TCGA-E2-A1IG 
       17.69        83.31        12.33        16.54         9.93        70.36 
TCGA-E9-A1NI TCGA-EW-A1PE 
        9.86        10.52 

$`MAP2K4 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A25A TCGA-A7-A0CD 
       19.20        63.12        36.13        88.60       107.70        38.30 
TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26I TCGA-A7-A2KD TCGA-A7-A3J1 
       23.61        31.36        24.26        21.73        22.32        11.28 
TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E TCGA-A8-A084 
       11.97        11.05        53.06        29.03        19.99        15.06 
TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I 
       33.01        33.01        33.01         1.02        49.05        45.07 
TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X 
       29.98        16.57        19.79        14.53        19.33        13.71 
TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM 
       50.24        17.79         5.65         2.56        32.91        98.33 
TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0DO 
       17.23        66.15        57.27        73.35        24.62        54.05 
TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 
       32.58        21.44        89.16        10.42        21.14        14.79 
TCGA-E2-A15O TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 
       50.79        73.64        50.07        26.99        15.68        52.96 
TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU 
       75.02        85.35        24.95        25.05        14.79        40.08 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ 
       20.88        13.68        31.79         7.96        39.32        18.21 
TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U 
      143.15        18.02        78.41       121.94        73.84        87.25 
TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO 
      101.98        55.43       136.73        99.12        24.79       114.81 
TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV 
       92.48       107.93        77.19        75.25         5.19        98.99 
TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 
      107.93        56.81        53.13        67.33        34.55        33.76 
TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP 
       61.58        25.22       101.72       134.40        80.28       118.45 
TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV 
       79.76        74.40        72.00        35.05        34.29        31.82 
TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV 
       61.94        24.72        63.29        99.19        54.64        27.12 
TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 
       44.88        50.43        44.28        17.52        17.13         8.38 
TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC 
       49.84        20.52        17.46        18.90        20.75        32.55 
TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI 
       25.28        18.21        50.47        21.90        21.67        49.48 
TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV 
       18.61        19.33        48.46        31.73        23.77        23.47 
TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       17.36        60.72        22.45        19.20        16.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U 
       12.00        32.05         9.99        10.98         8.98        24.99 
TCGA-A8-A07W TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
        9.99        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 
       31.00         0.99       112.08        43.00        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       41.98        12.00         9.99         9.99        12.00        50.04 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       33.07         1.02        25.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        0.99        14.01        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23G 
        0.99        27.02        17.03        38.04        19.23        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03U 
       61.35        66.77        81.63        95.70        68.75        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       44.42        32.78        21.40        52.18        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       72.00        76.77        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
      113.62       108.72       106.78       108.03       102.31        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       97.08        82.62        11.51        24.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY 
       15.62        32.52        84.10        23.31        64.83        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AT TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       99.32        41.82        61.28        86.53        86.43        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
      160.90        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28       112.77        97.84       105.27       102.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
      105.30        50.96        98.76        98.66        89.00        99.62 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       93.30        85.64        71.05        93.83       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       86.53        54.21        63.62        38.17        39.39        40.54 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       33.30        38.96        10.59        77.62       143.38       281.29 
TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       32.58        11.90       275.87        50.70        65.52       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO 
      129.07       140.88       255.68       234.28       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0WS TCGA-B6-A0WT 
      102.77       140.28        89.46       282.90        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0X0 TCGA-B6-A0X1 
       79.46        18.35        21.01       113.79       129.70       245.10 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       68.94        58.55        43.59       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
      170.17        37.87         7.07        85.35        74.99        68.12 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       18.84       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 
       25.55        63.09        81.44        37.74        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       70.22        84.13        51.58        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       18.21        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        81.73        77.98        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       13.91        78.28         3.22         2.56        79.00        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       70.88        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0GZ TCGA-BH-A0H0 
       44.81        81.83        24.49        31.00        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HB 
       63.39        53.26        24.56        23.08        41.00        26.50 
TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO 
       23.90        20.38         5.85         2.37        16.96         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
       13.61        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0WA TCGA-BH-A18F 
        5.59        23.93        24.95        42.35        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        4.90        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       37.74        30.28        55.63        37.55        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       51.39        51.16        69.93        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1F0 TCGA-BH-A1F2 
       42.28        12.00        55.69        49.58        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48        25.08       114.15        33.17        74.73       122.83 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
       33.99        63.35        55.00        45.63        72.07        53.98 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A208 TCGA-BH-A209 
       55.50        28.14        26.14        38.60        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       36.82        36.79        20.12        10.52       110.60        20.88 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       18.64        23.51        11.93        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       48.53        12.56        12.16        13.51        12.59        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92        12.46        12.49        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A26V 
       11.28         0.16        12.03        12.33        12.95        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.53        12.36        12.95        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM 
       15.22        14.73        21.83        14.50        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU 
       55.30        16.41        15.85        16.31        16.64        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       15.16        43.04        15.32        15.52        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IH 
       32.35        28.50        37.25        77.65        37.41        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
       19.99         6.15        13.94        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        17.52 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
        7.40       109.87        59.57       216.76        79.10        83.34 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
      101.62       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       11.57        32.75        17.06        15.32        14.70        14.47 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       27.91        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE 
       64.21        86.96 

  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
            0.33             0.03 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
          212.25           282.90 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
           34.08            30.79 
[1] "0.3 - 212.2 (34.1)" "0.0 - 282.9 (30.8)"
[1] "hr=" "1.1"
D11V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  MAP2K4 MUTATED         3        1        0        1        11         9
  MAP2K4 WILD-TYPE      85       70        6        3       315       218
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  MAP2K4 MUTATED           0          5          0          1        1       0
  MAP2K4 WILD-TYPE         2        132         24         56       14      12
D11V3, multiclass
            clus
vv           MAP2K4 MUTATED MAP2K4 WILD-TYPE
  STAGE I                 3               85
  STAGE IA                1               70
  STAGE IB                0                6
  STAGE II                1                3
  STAGE IIA              11              315
  STAGE IIB               9              218
  STAGE III               0                2
  STAGE IIIA              5              132
  STAGE IIIB              0               24
  STAGE IIIC              1               56
  STAGE IV                1               14
  STAGE X                 0               12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  MAP2K4 MUTATED     8  17   7   0
  MAP2K4 WILD-TYPE 249 547 113  35
D11V4, multiclass
    clus
vv   MAP2K4 MUTATED MAP2K4 WILD-TYPE
  T1              8              249
  T2             17              547
  T3              7              113
  T4              0               35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  MAP2K4 MUTATED    12  15   3   2
  MAP2K4 WILD-TYPE 450 310 104  66
D11V5, multiclass
    clus
vv   MAP2K4 MUTATED MAP2K4 WILD-TYPE
  N0             12              450
  N1             15              310
  N2              3              104
  N3              2               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V6, binary
                  cls
clus                 0   1
  MAP2K4 MUTATED    28   1
  MAP2K4 WILD-TYPE 814  15
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED     28    1
  MAP2K4 WILD-TYPE  814   15
   clus
vv  MAP2K4 MUTATED MAP2K4 WILD-TYPE
  0             28              814
  1              1               15
[1] 2 2
[1] FALSE
D11V7, binary
                  cls
clus                 0   1
  MAP2K4 MUTATED    32   0
  MAP2K4 WILD-TYPE 936   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED     32    0
  MAP2K4 WILD-TYPE  936    9
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  FEMALE             32              936
  MALE                0                9
[1] 2 2
[1] FALSE
D11V8, binary
                  cls
clus                 0   1
  MAP2K4 MUTATED    16  15
  MAP2K4 WILD-TYPE 371 487
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED     16   15
  MAP2K4 WILD-TYPE  371  487
     clus
vv    MAP2K4 MUTATED MAP2K4 WILD-TYPE
  NO              16              371
  YES             15              487
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  MAP2K4 MUTATED                            0                            28
  MAP2K4 WILD-TYPE                          1                           683
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  MAP2K4 MUTATED                                1                   0
  MAP2K4 WILD-TYPE                            171                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  MAP2K4 MUTATED                       0                                2
  MAP2K4 WILD-TYPE                     6                               25
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  MAP2K4 MUTATED                    0              1
  MAP2K4 WILD-TYPE                 14             39
D11V9, multiclass
                                  clus
vv                                 MAP2K4 MUTATED MAP2K4 WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA                28              683
  INFILTRATING LOBULAR CARCINOMA                1              171
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)              2               25
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                                1               39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MAP2K4 MUTATED                                  0     2
  MAP2K4 WILD-TYPE                                1    55
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  MAP2K4 MUTATED                           2    25
  MAP2K4 WILD-TYPE                       119   680
D11V11, multiclass
                                  clus
vv                                 MAP2K4 MUTATED MAP2K4 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         2               55
  BLACK OR AFRICAN AMERICAN                     2              119
  WHITE                                        25              680
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V12, binary
                  cls
clus                 0   1
  MAP2K4 MUTATED     1  24
  MAP2K4 WILD-TYPE  33 748
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED      1   24
  MAP2K4 WILD-TYPE   33  748
                        clus
vv                       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  HISPANIC OR LATINO                  1               33
  NOT HISPANIC OR LATINO             24              748
[1] 2 2
[1] FALSE

Clustering(12) Variable = ARID1A MUTATION ANALYSIS
D12V1, survival
                  sevent
clus2                0   1
  ARID1A MUTATED    22   2
  ARID1A WILD-TYPE 804 136
  ARID1A MUTATED ARID1A WILD-TYPE 
              24              940 
  ARID1A MUTATED ARID1A WILD-TYPE 
               2              136 
$`ARID1A MUTATED`
TCGA-A1-A0SP TCGA-A2-A0CR TCGA-A2-A0T5 TCGA-A2-A4RW TCGA-A7-A4SB TCGA-A8-A07I 
       19.20       107.93        17.46         7.30        13.74        14.01 
TCGA-A8-A07J TCGA-A8-A07R TCGA-A8-A0A6 TCGA-AC-A23H TCGA-AR-A2LE TCGA-B6-A0RG 
       12.00         8.98        21.04         5.72       166.42        68.45 
TCGA-B6-A1KC TCGA-BH-A0E7 TCGA-BH-A0EE TCGA-BH-A0HF TCGA-BH-A0HW TCGA-BH-A1EO 
       43.59        44.81        31.00        23.90        51.32        91.99 
TCGA-D8-A1JD TCGA-D8-A27R TCGA-E2-A1IG TCGA-EW-A1OX TCGA-EW-A2FS TCGA-LL-A5YL 
       18.15        10.09        70.36        29.95        52.73        17.06 

$`ARID1A WILD-TYPE`
TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A TCGA-A7-A0CD 
       63.12        36.13        88.60        19.56       107.70        38.30 
TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       23.61        31.36        24.26        23.80        21.73        22.32 
TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       11.28        11.97        11.05        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CS 
      136.73        99.12        24.79       114.81        92.48        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ 
       75.25         5.19        98.99       107.93        56.81        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T6 
       17.52        17.13         8.38        49.84        20.52        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       19.20        16.47        52.47        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT 
      105.34        10.59        36.23        39.65        33.93        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
       50.83        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        35.31        34.29        35.47        30.61        37.45 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F 
       35.67        33.11        29.79        31.73        20.19        25.15 
TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       29.56        23.74        20.61        11.34        10.59        10.29 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE 
       13.41        14.70        14.93        14.66        14.50        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P 
       17.92        14.73        12.10        10.72        13.02        13.02 
TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 
        1.02        17.98        31.00        26.01         1.02        17.03 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G 
       53.98         9.01        43.00        33.99        18.97        18.97 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
       32.05         9.99        10.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 
       14.01        12.00        19.04        13.02         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 
       17.03        38.04        19.23        22.95        73.91        22.26 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
       73.05        99.35        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       87.12        26.04        74.14        33.04        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM 
       32.45         6.48        16.31        14.83        22.19        25.05 
TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU 
       14.99        15.48        23.24        24.79        16.80        14.96 
TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
       17.42         0.33         0.33         0.23         0.33         0.62 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        2.96         1.78         1.71         9.96         7.36         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        0.16         0.33         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        7.96         7.00         7.59         7.17         6.90         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        0.33         0.36         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        69.83        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       44.42        32.78        21.40        52.18        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       72.00        76.77        65.10        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      115.27       113.62       108.72       106.78       108.03       102.31 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        82.68        70.42        60.56        53.88        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J 
       20.45        97.08        82.62        11.51        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX 
      130.09        15.62        32.52        84.10        23.31        64.83 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH 
       55.86        65.36       133.22        83.87       134.14       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO 
      108.36       101.00       103.86        97.68        96.00        86.07 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV 
       93.90        99.32        37.81        41.82        94.29        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L 
       86.53        86.43        33.73       160.90        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
      120.33        99.78       118.59         2.76       104.28       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       97.84       105.27       102.84       105.30        50.96        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       98.66        89.00        99.62        93.30        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
       93.83        20.25        86.53        54.21        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
      143.38       281.29        32.58        11.90       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
       50.70        65.52       146.50       112.37       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      127.33        84.59       165.76       129.07       140.88       255.68 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28       263.28       162.05       102.77       140.28 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       282.90       169.51        97.48       188.68        79.46 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.01       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       28.27        68.94        58.55       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
      170.17        37.87         7.07        85.35        74.99        68.12 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       18.84       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 
       25.55        63.09        81.44        37.74        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       70.22        84.13        51.58        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       18.21        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        81.73        77.98        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        78.28        15.65         3.22         2.56        79.00 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        70.88        16.27         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
        9.63        81.83        24.49        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       52.96        26.50        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY 
        2.50        13.61        36.85        12.89        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1ET 
        7.36        51.39        51.16        69.93       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       42.28        12.00        55.69        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       31.53        97.48        25.08       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN 
      122.83        33.99        63.35        55.00        45.63        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
       53.98        55.50        28.14        26.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       57.83       130.16        36.82        36.79        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M 
      110.60        20.88        18.64        23.51        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        48.53        12.56        12.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       12.59        12.59        12.92        12.46        12.49        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM 
       10.92        11.34        11.28         0.16        12.03        12.33 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y 
       12.95        12.33        20.25        12.53        12.36        12.95 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       15.45        16.87        16.70         0.03         9.76        24.56 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       14.43        33.99        12.95        56.81        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        13.97        14.17        13.48        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF 
       17.49        16.50        55.50        15.78        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL 
       53.00        14.01        18.97        20.09        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       19.40        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA 
       18.58        17.79        16.73        25.74        23.90        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK 
       18.15        12.39        15.22        14.73        21.83        14.50 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       19.92        17.69        55.30        16.41        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.64        12.99        15.16        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       15.52         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43        48.03        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
       17.06         1.61        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 
       18.51        21.67        43.00        34.42        27.52        46.59 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       40.41        37.51        40.11        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T 
       44.68        40.96        38.24        38.60        33.17        75.98 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       43.33        34.26        32.02        31.96        69.34        18.51 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       63.62        69.96        23.24        19.43        21.04        23.87 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       25.05        23.34        22.82        17.29        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        55.63        53.92         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ 
       11.05        19.56        56.94        14.07        51.39        76.57 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD 
       53.62        87.22        33.01        32.35        28.50        37.25 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       77.65        37.41        33.73        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
        3.88        22.19        60.99        11.08        54.18        60.36 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI 
       19.66        24.59        75.81        28.90       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
        8.75        43.04        52.73        34.55        43.56         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       30.61        34.92        38.76        34.82        32.88        36.82 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       34.16        36.20        36.56        39.55        41.62        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.24        25.84        18.94         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       34.95         2.56         6.12         3.02        11.15        48.23 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
       45.01        32.09        40.24         1.12        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
       21.27        46.59        47.64        34.45        32.05        42.25 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       37.74        39.09        38.37        41.03        41.72        40.73 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       40.50        20.12         0.69        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       24.56        12.33        29.72         9.47        38.07        32.91 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       30.18        30.44        23.90        23.84        26.70         0.79 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       25.81        26.40        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OY 
       18.90        13.25        16.57        28.77        25.94        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FV TCGA-EW-A2FW 
       10.52        34.55        19.96        55.00        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       115.69       106.06       101.62       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YM 
        2.60        62.47        11.84        11.57        32.75        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.70        14.47        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       58.52        31.99        58.62        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       41.92        47.01        64.21        86.96 

  ARID1A MUTATED ARID1A WILD-TYPE 
            5.72             0.03 
  ARID1A MUTATED ARID1A WILD-TYPE 
          166.42           282.90 
  ARID1A MUTATED ARID1A WILD-TYPE 
           22.47            31.00 
[1] "5.7 - 166.4 (22.5)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.6"
D12V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  ARID1A MUTATED         1        2        0        0         6        11
  ARID1A WILD-TYPE      87       69        6        4       320       216
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  ARID1A MUTATED           0          2          1          4        0       0
  ARID1A WILD-TYPE         2        135         23         53       15      12
D12V3, multiclass
            clus
vv           ARID1A MUTATED ARID1A WILD-TYPE
  STAGE I                 1               87
  STAGE IA                2               69
  STAGE IB                0                6
  STAGE II                0                4
  STAGE IIA               6              320
  STAGE IIB              11              216
  STAGE III               0                2
  STAGE IIIA              2              135
  STAGE IIIB              1               23
  STAGE IIIC              4               53
  STAGE IV                0               15
  STAGE X                 0               12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  ARID1A MUTATED     4  17   5   1
  ARID1A WILD-TYPE 253 547 115  34
D12V4, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  T1              4              253
  T2             17              547
  T3              5              115
  T4              1               34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  ARID1A MUTATED    12   9   1   4
  ARID1A WILD-TYPE 450 316 106  64
D12V5, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  N0             12              450
  N1              9              316
  N2              1              106
  N3              4               64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V6, binary
                  cls
clus                 0   1
  ARID1A MUTATED    24   0
  ARID1A WILD-TYPE 818  16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     24    0
  ARID1A WILD-TYPE  818   16
   clus
vv  ARID1A MUTATED ARID1A WILD-TYPE
  0             24              818
  1              0               16
[1] 2 2
[1] FALSE
D12V7, binary
                  cls
clus                 0   1
  ARID1A MUTATED    27   0
  ARID1A WILD-TYPE 941   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     27    0
  ARID1A WILD-TYPE  941    9
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  FEMALE             27              941
  MALE                0                9
[1] 2 2
[1] FALSE
D12V8, binary
                  cls
clus                 0   1
  ARID1A MUTATED     5  15
  ARID1A WILD-TYPE 382 487
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      5   15
  ARID1A WILD-TYPE  382  487
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  NO               5              382
  YES             15              487
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  ARID1A MUTATED                            0                            18
  ARID1A WILD-TYPE                          1                           693
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  ARID1A MUTATED                                7                   0
  ARID1A WILD-TYPE                            165                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  ARID1A MUTATED                       0                                1
  ARID1A WILD-TYPE                     6                               26
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  ARID1A MUTATED                    1              0
  ARID1A WILD-TYPE                 13             40
D12V9, multiclass
                                  clus
vv                                 ARID1A MUTATED ARID1A WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA                18              693
  INFILTRATING LOBULAR CARCINOMA                7              165
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)              1               26
  MUCINOUS CARCINOMA                            1               13
  OTHER, SPECIFY                                0               40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ARID1A MUTATED                                  0     3
  ARID1A WILD-TYPE                                1    54
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  ARID1A MUTATED                           1    16
  ARID1A WILD-TYPE                       120   689
D12V11, multiclass
                                  clus
vv                                 ARID1A MUTATED ARID1A WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         3               54
  BLACK OR AFRICAN AMERICAN                     1              120
  WHITE                                        16              689
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V12, binary
                  cls
clus                 0   1
  ARID1A MUTATED     1  16
  ARID1A WILD-TYPE  33 756
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      1   16
  ARID1A WILD-TYPE   33  756
                        clus
vv                       ARID1A MUTATED ARID1A WILD-TYPE
  HISPANIC OR LATINO                  1               33
  NOT HISPANIC OR LATINO             16              756
[1] 2 2
[1] FALSE

Clustering(13) Variable = FOXA1 MUTATION ANALYSIS
D13V1, survival
                 sevent
clus2               0   1
  FOXA1 MUTATED    15   7
  FOXA1 WILD-TYPE 811 131
  FOXA1 MUTATED FOXA1 WILD-TYPE 
             22             942 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
              7             131 
$`FOXA1 MUTATED`
TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-A2-A0EU TCGA-A2-A0SY TCGA-A2-A1FZ TCGA-A2-A4S2 
       26.99        15.68        34.29        44.28        22.45        21.14 
TCGA-A8-A082 TCGA-A8-A08A TCGA-AC-A23H TCGA-AC-A2FM TCGA-AC-A3EH TCGA-AR-A24O 
       18.05         0.99         5.72        26.04         6.48       118.59 
TCGA-BH-A0HK TCGA-BH-A18P TCGA-BH-A18T TCGA-BH-A1FL TCGA-BH-A2L8 TCGA-D8-A1JN 
        5.85        30.28         7.36        55.00        20.12        20.38 
TCGA-D8-A1XV TCGA-EW-A1IW TCGA-OK-A5Q2 TCGA-OL-A66J 
       15.16        12.20         2.10        65.62 

$`FOXA1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A440 
       73.64        50.07        52.96        75.02        85.35        24.95 
TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE 
       25.05        14.79        40.08         8.52        14.37        43.43 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       48.10        14.27        47.24        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        39.32        18.21       143.15        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
      121.94        73.84        87.25       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12        24.79       114.81        92.48       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ 
       75.25         5.19        98.99       107.93        56.81        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       35.05        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0T1 
       54.64        27.12        44.88        50.43        17.52        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 
        8.38        49.84        20.52        17.46        18.90        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH 
       32.55        25.28        18.21        50.47        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT 
       49.48        18.61        19.33        48.46        31.73        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 
       23.47        17.36        60.72        20.25        19.20        16.47 
TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F 
       52.47        42.44        17.19        18.15       105.34        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV 
       36.23        39.65        33.93        91.07        29.98        32.75 
TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW 
       56.28        47.31        35.93        50.37        50.83         7.30 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S3 TCGA-A7-A0CE 
       24.39        21.30        23.21        26.96        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U 
       12.00        32.05         9.99        10.98         8.98        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08B TCGA-A8-A08C 
        9.99        45.07        36.95        13.02        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       60.92        87.12        74.14        33.04        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN 
       32.45        16.31        14.83        22.19        25.05        14.99 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y 
       15.48        23.24        24.79        16.80        14.96        17.42 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A 
        0.33         0.33         0.23         0.33         0.62         2.96 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        1.78         1.71         9.96         7.36         7.46         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.33         0.33         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV 
        7.00         7.59         7.17         6.90         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL 
        0.36         0.33         0.33         0.33         0.53         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       81.63        95.70        68.75        69.83        58.95        44.42 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       32.78        21.40        52.18        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       22.36        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        65.10        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
      113.62       108.72       106.78       108.03       102.31        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       97.08        82.62        11.51        24.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY 
       15.62        32.52        84.10        23.31        64.83        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        37.81        41.82        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
       99.78         2.76       104.28       112.77        97.84       105.27 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
      102.84       105.30        50.96        98.76        98.66        89.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       99.62        93.30        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       40.54        33.30        38.96        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      281.29        32.58        11.90       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.52       146.50       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28       263.28       162.05       102.77       140.28 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       282.90       169.51        97.48       188.68        79.46 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.01       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.55        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       68.12        18.84       103.63        71.15        62.93        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 
       20.45        25.55        63.09        81.44        37.74        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.16        70.22        84.13        51.58        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        72.23        75.48        74.14        76.60        85.87 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       77.75        49.94        77.95        74.14        41.75        46.39 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        81.73        77.98        67.10        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       29.98        13.91        78.28        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       79.00        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30         9.63        44.81        81.83        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       63.32        30.35        10.78        15.16        63.39        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF 
       24.56        23.08        41.00        52.96        26.50        23.90 
TCGA-BH-A0HI TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       20.38         2.37        16.96         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
       12.89        51.32        27.25        50.79         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05        32.91         4.90 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
       35.93        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       55.63        37.55        66.05        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       10.52       110.60        20.88        18.64        23.51        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        48.53        12.56        12.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       13.51        12.59        12.59        12.92        12.46        12.49 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.95        15.45        16.87        16.70         0.03         9.76 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z 
       24.56        14.43        33.99        12.95        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       20.12        20.09        19.40        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        15.22        14.73        21.83 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       14.50        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.31        16.64        12.99        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       15.52         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43        48.03        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
       17.06         1.61        10.09        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       33.37        18.51        21.67        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       46.59        40.41        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       47.15        44.68        40.96        38.24        38.60        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       75.98        43.33        34.26        32.02        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       18.51        63.62        69.96        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        25.05        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       20.58        11.05        19.56        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       76.57        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       37.25        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        52.73        34.55 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 
       43.56         8.28        30.61        34.92        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        34.16        36.20        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       41.62        35.77        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IX TCGA-EW-A1IY 
       26.70         0.79        25.81        26.40        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV 
       18.21        18.90        13.25        16.57        28.77        25.94 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 
       29.95        29.85        40.41        41.13        39.78        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       23.11        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
        6.15        13.94        10.52        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        17.52 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
        7.40       109.87        59.57       216.76        79.10        83.34 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
      101.62       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       11.57        32.75        17.06        15.32        14.70        14.47 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       27.91        22.39        36.30        58.52        31.99        58.62 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 
       34.92        36.36        28.87        24.72        22.32        20.38 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       26.70        23.47        41.92        47.01        64.21        86.96 

  FOXA1 MUTATED FOXA1 WILD-TYPE 
           0.99            0.03 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
         118.59          282.90 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
         20.250          31.445 
[1] "1.0 - 118.6 (20.2)" "0.0 - 282.9 (31.4)"
[1] "hr=" "4.5"
D13V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  FOXA1 MUTATED         3        1        0        1         5         6
  FOXA1 WILD-TYPE      85       70        6        3       321       221
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  FOXA1 MUTATED           0          3          1          3        0       0
  FOXA1 WILD-TYPE         2        134         23         54       15      12
D13V3, multiclass
            clus
vv           FOXA1 MUTATED FOXA1 WILD-TYPE
  STAGE I                3              85
  STAGE IA               1              70
  STAGE IB               0               6
  STAGE II               1               3
  STAGE IIA              5             321
  STAGE IIB              6             221
  STAGE III              0               2
  STAGE IIIA             3             134
  STAGE IIIB             1              23
  STAGE IIIC             3              54
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  FOXA1 MUTATED     4  12   6   1
  FOXA1 WILD-TYPE 253 552 114  34
D13V4, multiclass
    clus
vv   FOXA1 MUTATED FOXA1 WILD-TYPE
  T1             4             253
  T2            12             552
  T3             6             114
  T4             1              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  FOXA1 MUTATED    10   7   2   3
  FOXA1 WILD-TYPE 452 318 105  65
D13V5, multiclass
    clus
vv   FOXA1 MUTATED FOXA1 WILD-TYPE
  N0            10             452
  N1             7             318
  N2             2             105
  N3             3              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V6, binary
                 cls
clus                0   1
  FOXA1 MUTATED    19   0
  FOXA1 WILD-TYPE 823  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXA1 MUTATED     19    0
  FOXA1 WILD-TYPE  823   16
   clus
vv  FOXA1 MUTATED FOXA1 WILD-TYPE
  0            19             823
  1             0              16
[1] 2 2
[1] FALSE
D13V7, binary
                 cls
clus                0   1
  FOXA1 MUTATED    23   0
  FOXA1 WILD-TYPE 945   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXA1 MUTATED     23    0
  FOXA1 WILD-TYPE  945    9
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  FEMALE            23             945
  MALE               0               9
[1] 2 2
[1] FALSE
D13V8, binary
                 cls
clus                0   1
  FOXA1 MUTATED    11   6
  FOXA1 WILD-TYPE 376 496
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXA1 MUTATED     11    6
  FOXA1 WILD-TYPE  376  496
     clus
vv    FOXA1 MUTATED FOXA1 WILD-TYPE
  NO             11             376
  YES             6             496
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  FOXA1 MUTATED                            0                            10
  FOXA1 WILD-TYPE                          1                           701
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  FOXA1 MUTATED                               11                   0
  FOXA1 WILD-TYPE                            161                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  FOXA1 MUTATED                       0                                1
  FOXA1 WILD-TYPE                     6                               26
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  FOXA1 MUTATED                    1              0
  FOXA1 WILD-TYPE                 13             40
D13V9, multiclass
                                  clus
vv                                 FOXA1 MUTATED FOXA1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA               10             701
  INFILTRATING LOBULAR CARCINOMA              11             161
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             1              26
  MUCINOUS CARCINOMA                           1              13
  OTHER, SPECIFY                               0              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  FOXA1 MUTATED                                  0     0
  FOXA1 WILD-TYPE                                1    57
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  FOXA1 MUTATED                           1    18
  FOXA1 WILD-TYPE                       120   687
D13V11, multiclass
                                  clus
vv                                 FOXA1 MUTATED FOXA1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              57
  BLACK OR AFRICAN AMERICAN                    1             120
  WHITE                                       18             687
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V12, binary
                 cls
clus                0   1
  FOXA1 MUTATED     1  16
  FOXA1 WILD-TYPE  33 756
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXA1 MUTATED      1   16
  FOXA1 WILD-TYPE   33  756
                        clus
vv                       FOXA1 MUTATED FOXA1 WILD-TYPE
  HISPANIC OR LATINO                 1              33
  NOT HISPANIC OR LATINO            16             756
[1] 2 2
[1] FALSE

Clustering(14) Variable = GPS2 MUTATION ANALYSIS
D14V1, survival
                sevent
clus2              0   1
  GPS2 MUTATED     8   2
  GPS2 WILD-TYPE 818 136
  GPS2 MUTATED GPS2 WILD-TYPE 
            10            954 
  GPS2 MUTATED GPS2 WILD-TYPE 
             2            136 
$`GPS2 MUTATED`
TCGA-A2-A04V TCGA-A2-A0EO TCGA-A2-A0SY TCGA-AO-A0JA TCGA-AR-A1AU TCGA-B6-A0IM 
       63.12        80.28        44.28        21.53        94.29       127.33 
TCGA-E2-A15I TCGA-EW-A3E8 TCGA-GM-A2DB TCGA-JL-A3YW 
       55.63        34.03        79.10        11.84 

$`GPS2 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A TCGA-A7-A0CD 
       19.20        36.13        88.60        19.56       107.70        38.30 
TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       23.61        31.36        24.26        23.80        21.73        22.32 
TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       11.28        11.97        11.05        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      101.72       134.40       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0T0 
       99.19        54.64        27.12        44.88        50.43        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.13         8.38        49.84        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       19.20        16.47        52.47        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT 
      105.34        10.59        36.23        39.65        33.93        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.83         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ 
       25.15        29.56        23.74        20.61        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC 
       10.29        13.41        14.70        14.93        13.74        14.66 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       13.02        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        43.00        40.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N 
        9.99         9.99        12.00        50.04        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       17.03        38.04        19.23        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH 
       25.05        14.99        15.48        23.24        24.79        16.80 
TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 
       14.96        17.42         0.33         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.53         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JB TCGA-AO-A0JC 
       37.48        20.32        22.36        53.03        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       72.00        76.77        65.10        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      115.27       113.62       108.72       106.78       108.03       102.31 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        82.68        70.42        60.56        53.88        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J 
       20.45        97.08        82.62        11.51        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX 
      130.09        15.62        32.52        84.10        23.31        64.83 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH 
       55.86        65.36       133.22        83.87       134.14       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO 
      108.36       101.00       103.86        97.68        96.00        86.07 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AV TCGA-AR-A1AW 
       93.90        99.32        37.81        41.82        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       89.00        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        54.21        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
      143.38       281.29        32.58        11.90       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
       50.70        65.52       146.50       112.37       233.62        18.77 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28       263.28       162.05       102.77       140.28 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       282.90       169.51        97.48       188.68        79.46 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.01       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.55        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       68.12        18.84       103.63        71.15        62.93        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 
       20.45        25.55        63.09        81.44        37.74        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.16        70.22        84.13        51.58        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        72.23        75.48        74.14        76.60        85.87 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       77.75        49.94        77.95        74.14        41.75        46.39 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        81.73        77.98        67.10        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       29.98        13.91        78.28        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       79.00        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30         9.63        44.81        81.83        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       63.32        30.35        10.78        15.16        63.39        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF 
       24.56        23.08        41.00        52.96        26.50        23.90 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP 
       20.38         5.85         2.37        16.96         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       36.85        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        4.90        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       37.74        30.28        55.63        37.55        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       51.39        51.16        69.93        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       42.28        12.00        55.69        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       31.53        97.48        25.08       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN 
      122.83        33.99        63.35        55.00        45.63        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
       53.98        55.50        28.14        26.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       57.83       130.16        36.82        36.79        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M 
      110.60        20.88        18.64        23.51        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        48.53        12.56        12.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       12.59        12.59        12.92        12.46        12.49        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM 
       10.92        11.34        11.28         0.16        12.03        12.33 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y 
       12.95        12.33        20.25        12.53        12.36        12.95 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       15.45        16.87        16.70         0.03         9.76        24.56 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       14.43        33.99        12.95        56.81        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        13.97        14.17        13.48        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       17.49        16.50        55.50        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       12.03        53.00        14.01        18.97        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       20.09        19.40        20.38        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        15.22        14.73        21.83 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       14.50        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       16.31        16.64        12.99        15.16        43.04        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       15.32        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       16.04        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V 
       13.48        17.06         1.61        10.09        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 
       12.26        33.37        18.51        21.67        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       27.52        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.87        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        75.98        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       69.34        18.51        63.62        69.96        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15J TCGA-E2-A15K 
       20.71        21.63        18.21        12.92        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       20.58        11.05        19.56        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       76.57        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       37.25        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        52.73        34.55 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 
       43.56         8.28        30.61        34.92        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        34.16        36.20        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       41.62        35.77        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       19.99         6.15        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3U0 TCGA-EW-A423 
       55.00        52.73        25.91        22.09        17.49        17.52 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DC TCGA-GM-A2DF 
        7.40       109.87        59.57       216.76        83.34        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      110.50        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YX TCGA-LL-A441 
       13.55        18.12         2.60        62.47        11.57        32.75 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U 
       17.06        15.32        14.70        14.47        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  GPS2 MUTATED GPS2 WILD-TYPE 
         11.84           0.03 
  GPS2 MUTATED GPS2 WILD-TYPE 
        127.33         282.90 
  GPS2 MUTATED GPS2 WILD-TYPE 
        59.375         30.395 
[1] "11.8 - 127.3 (59.4)" "0.0 - 282.9 (30.4)" 
[1] "hr=" "1.1"
D14V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  GPS2 MUTATED         0        1        0        0         3         3
  GPS2 WILD-TYPE      88       70        6        4       323       224
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  GPS2 MUTATED           0          2          0          1        0       0
  GPS2 WILD-TYPE         2        135         24         56       15      12
D14V3, multiclass
            clus
vv           GPS2 MUTATED GPS2 WILD-TYPE
  STAGE I               0             88
  STAGE IA              1             70
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             3            323
  STAGE IIB             3            224
  STAGE III             0              2
  STAGE IIIA            2            135
  STAGE IIIB            0             24
  STAGE IIIC            1             56
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  GPS2 MUTATED     1   6   3   0
  GPS2 WILD-TYPE 256 558 117  35
D14V4, multiclass
    clus
vv   GPS2 MUTATED GPS2 WILD-TYPE
  T1            1            256
  T2            6            558
  T3            3            117
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  GPS2 MUTATED     6   2   1   1
  GPS2 WILD-TYPE 456 323 106  67
D14V5, multiclass
    clus
vv   GPS2 MUTATED GPS2 WILD-TYPE
  N0            6            456
  N1            2            323
  N2            1            106
  N3            1             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V6, binary
                cls
clus               0   1
  GPS2 MUTATED     9   0
  GPS2 WILD-TYPE 833  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPS2 MUTATED      9    0
  GPS2 WILD-TYPE  833   16
   clus
vv  GPS2 MUTATED GPS2 WILD-TYPE
  0            9            833
  1            0             16
[1] 2 2
[1] FALSE
D14V7, binary
                cls
clus               0   1
  GPS2 MUTATED    10   0
  GPS2 WILD-TYPE 958   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPS2 MUTATED     10    0
  GPS2 WILD-TYPE  958    9
        clus
vv       GPS2 MUTATED GPS2 WILD-TYPE
  FEMALE           10            958
  MALE              0              9
[1] 2 2
[1] FALSE
D14V8, binary
                cls
clus               0   1
  GPS2 MUTATED     5   5
  GPS2 WILD-TYPE 382 497
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPS2 MUTATED      5    5
  GPS2 WILD-TYPE  382  497
     clus
vv    GPS2 MUTATED GPS2 WILD-TYPE
  NO             5            382
  YES            5            497
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  GPS2 MUTATED                            0                             6
  GPS2 WILD-TYPE                          1                           705
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  GPS2 MUTATED                                3                   0
  GPS2 WILD-TYPE                            169                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  GPS2 MUTATED                       0                                0
  GPS2 WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  GPS2 MUTATED                    0              1
  GPS2 WILD-TYPE                 14             39
D14V9, multiclass
                                  clus
vv                                 GPS2 MUTATED GPS2 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA               6            705
  INFILTRATING LOBULAR CARCINOMA              3            169
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              1             39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  GPS2 MUTATED                                  0     1
  GPS2 WILD-TYPE                                1    56
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  GPS2 MUTATED                           2     7
  GPS2 WILD-TYPE                       119   698
D14V11, multiclass
                                  clus
vv                                 GPS2 MUTATED GPS2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       1             56
  BLACK OR AFRICAN AMERICAN                   2            119
  WHITE                                       7            698
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V12, binary
                cls
clus               0   1
  GPS2 MUTATED     1   9
  GPS2 WILD-TYPE  33 763
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPS2 MUTATED      1    9
  GPS2 WILD-TYPE   33  763
                        clus
vv                       GPS2 MUTATED GPS2 WILD-TYPE
  HISPANIC OR LATINO                1             33
  NOT HISPANIC OR LATINO            9            763
[1] 2 2
[1] FALSE

Clustering(15) Variable = TBX3 MUTATION ANALYSIS
D15V1, survival
                sevent
clus2              0   1
  TBX3 MUTATED    26   1
  TBX3 WILD-TYPE 800 137
  TBX3 MUTATED TBX3 WILD-TYPE 
            27            937 
  TBX3 MUTATED TBX3 WILD-TYPE 
             1            137 
$`TBX3 MUTATED`
TCGA-A7-A5ZX TCGA-A8-A084 TCGA-AR-A2LR TCGA-A2-A3KC TCGA-A2-A4S2 TCGA-A7-A0CH 
       11.05        15.06        57.27        36.23        21.14        35.47 
TCGA-A8-A06O TCGA-A8-A09R TCGA-A8-A0A4 TCGA-AN-A046 TCGA-AN-A0FS TCGA-AN-A0XR 
       13.02         8.98        13.02         0.33         6.90         0.33 
TCGA-AO-A128 TCGA-AQ-A1H3 TCGA-AR-A1AK TCGA-B6-A0RI TCGA-BH-A0E7 TCGA-BH-A0HQ 
      106.78        32.52       103.86       234.28        44.81        36.85 
TCGA-BH-A28Q TCGA-C8-A131 TCGA-C8-A1HN TCGA-D8-A1X6 TCGA-D8-A27G TCGA-D8-A3Z5 
       36.79        13.51        12.95        17.79        13.45        33.37 
TCGA-E2-A15M TCGA-E2-A1IF TCGA-E2-A1IJ 
       11.05        37.41        28.44 

$`TBX3 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       22.32        11.28        11.97        53.06        29.03        19.99 
TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C TCGA-A8-A09E 
       33.01        33.01        33.01        17.95         1.02        49.05 
TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI TCGA-AC-A5XS 
       45.07        29.98        16.57        19.79        14.53        19.33 
TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AQ-A54O 
       13.71        50.24        17.79         5.65         2.56        32.91 
TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 
       98.33        17.23        66.15        73.35        24.62        81.63 
TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 
       54.05        32.58        21.44        89.16        10.42        21.14 
TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 
       14.79        50.79        16.47        73.64        50.07        26.99 
TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y 
       15.68        52.96        75.02        85.35        24.95        25.05 
TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF 
       14.79        40.08         8.52        14.37        43.43        48.10 
TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM 
       14.27        47.24        20.88        13.68        31.79         7.96 
TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R 
       39.32        18.21       143.15        18.02        78.41       121.94 
TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL 
       73.84        87.25       101.98        55.43       136.73        99.12 
TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT 
       24.79       114.81        92.48       107.93        77.19        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 
        5.19        98.99       107.93        56.81        53.13        67.33 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       34.55        33.76        61.58        25.22       101.72       134.40 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
       80.28       118.45        79.76        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       34.29        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 
       54.64        27.12        44.88        50.43        44.28        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.13         8.38        49.84        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       19.20        16.47        52.47        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU 
      105.34        10.59        39.65        33.93        91.07        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       32.75        56.28        47.31        35.93        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S3 
        7.30        24.39        21.30        23.21        26.96        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       35.31        34.29        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       14.73        12.10        10.72        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        33.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 
       31.00         0.99       112.08        43.00        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       41.98        12.00         9.99         9.99        12.00        50.04 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
       33.07         1.02        25.02        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       14.01        12.00        19.04        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       17.03        38.04        19.23        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH 
       25.05        14.99        15.48        23.24        24.79        16.80 
TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 
       14.96        17.42         0.33         0.33         0.23         0.62 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        2.96         1.78         1.71         9.96         7.36         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        0.16         0.33         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FT TCGA-AN-A0FV 
        7.96         7.00         7.59         7.17         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL 
        0.36         0.33         0.33         0.33         0.53         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O 
        5.33         5.59        80.28        61.35        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       95.70        68.75        69.83        58.95        44.42        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 
       21.40        52.18        26.04        37.48        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE 
       53.03        21.53        50.70        50.86        72.00        76.77 
TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 
       65.10        62.04        55.33        71.80       115.27       113.62 
TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      108.72       108.03       102.31        98.27        82.68        70.42 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       60.56        53.88        40.57        20.45        97.08        82.62 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AR-A0TS 
       11.51        24.79        26.93       130.09        15.62        84.10 
TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       23.31        64.83        55.86        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AL TCGA-AR-A1AN 
      134.14       125.16       108.36       101.00        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      112.77        97.84       105.27       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       71.05        93.83       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       63.62        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 
       10.59        77.62       143.38       281.29        32.58        11.90 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RN TCGA-B6-A0RO 
      140.88       255.68        68.45       212.25       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.28        89.46       282.90       169.51        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.46        18.35        21.01       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.55        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        74.99        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 
       37.74        39.55        39.16        70.22        84.13        51.58 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       51.68        37.22        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        85.87        77.75        49.94        77.95        74.14 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       41.75        46.39        89.06        90.97        81.73        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP 
       67.10        38.01        29.98        13.91        78.28        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        79.00        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EB 
        4.41        15.68        14.30         9.63        81.83        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        63.32        30.35        10.78        15.16        63.39 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       53.26        24.56        23.08        41.00        52.96        26.50 
TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO 
       23.90        20.38         5.85         2.37        16.96         2.50 
TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       13.61        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        4.90        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       37.74        30.28        55.63        37.55        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       51.39        51.16        69.93        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       42.28        12.00        55.69        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       31.53        97.48        25.08       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN 
      122.83        33.99        63.35        55.00        45.63        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
       53.98        55.50        28.14        26.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
       57.83       130.16        36.82        20.12        10.52       110.60 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
       20.88        18.64        23.51        11.93        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
       12.66        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A134 
       12.66        48.53        12.56        12.16        12.59        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92        12.46        12.49        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HO TCGA-C8-A26V 
       11.28         0.16        12.03        12.33        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.53        12.36        12.95        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X7 
       21.01        12.20        13.32        14.70        18.58        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       14.14        17.42        16.04        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 
       12.53        12.26        18.51        21.67        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       27.52        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.87        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        75.98        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       69.34        18.51        63.62        69.96        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       20.71        21.63        18.21        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
        9.04        20.58        19.56        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       76.57        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IK 
       37.25        77.65        70.36        33.73        33.70        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
        3.88        22.19        60.99        11.08        54.18        60.36 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI 
       19.66        24.59        75.81        28.90       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
        8.75        43.04        52.73        34.55        43.56         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       30.61        34.92        38.76        34.82        32.88        36.82 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       34.16        36.20        36.56        39.55        41.62        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.24        25.84        18.94         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       34.95         2.56         6.12         3.02        11.15        48.23 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
       45.01        32.09        40.24         1.12        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
       21.27        46.59        47.64        34.45        32.05        42.25 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       37.74        39.09        38.37        41.03        41.72        40.73 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       40.50        20.12         0.69        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       24.56        12.33        29.72         9.47        38.07        32.91 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       30.18        30.44        23.90        23.84        26.70         0.79 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       25.81        26.40        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX 
       18.90        13.25        16.57        28.77        25.94        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 
       29.85        40.41        41.13        39.78        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       18.48        30.08         7.86        18.90        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       13.94        10.52        34.55        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 
       25.91        22.09        34.03        17.49        17.52         7.40 
TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF 
      109.87        59.57       216.76        79.10        83.34        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      110.50        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       13.55        18.12         2.60        62.47        11.84        11.57 
TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 
       32.75        17.06        15.32        14.70        14.47        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       22.39         2.10        36.30        58.52        31.99        58.62 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 
       34.92        36.36        28.87        24.72        22.32        20.38 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD 
       26.70        23.47        65.62        41.92        47.01        64.21 
TCGA-PE-A5DE 
       86.96 

  TBX3 MUTATED TBX3 WILD-TYPE 
          0.33           0.03 
  TBX3 MUTATED TBX3 WILD-TYPE 
        234.28         282.90 
  TBX3 MUTATED TBX3 WILD-TYPE 
         21.14          31.00 
[1] "0.3 - 234.3 (21.1)" "0.0 - 282.9 (31.0)"
[1] "hr=" "3.3"
D15V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  TBX3 MUTATED         5        1        0        0         8         5
  TBX3 WILD-TYPE      83       70        6        4       318       222
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  TBX3 MUTATED           0          4          1          3        0       0
  TBX3 WILD-TYPE         2        133         23         54       15      12
D15V3, multiclass
            clus
vv           TBX3 MUTATED TBX3 WILD-TYPE
  STAGE I               5             83
  STAGE IA              1             70
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             8            318
  STAGE IIB             5            222
  STAGE III             0              2
  STAGE IIIA            4            133
  STAGE IIIB            1             23
  STAGE IIIC            3             54
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  TBX3 MUTATED     6  18   2   1
  TBX3 WILD-TYPE 251 546 118  34
D15V4, multiclass
    clus
vv   TBX3 MUTATED TBX3 WILD-TYPE
  T1            6            251
  T2           18            546
  T3            2            118
  T4            1             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  TBX3 MUTATED    14   6   4   3
  TBX3 WILD-TYPE 448 319 103  65
D15V5, multiclass
    clus
vv   TBX3 MUTATED TBX3 WILD-TYPE
  N0           14            448
  N1            6            319
  N2            4            103
  N3            3             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V6, binary
                cls
clus               0   1
  TBX3 MUTATED    25   0
  TBX3 WILD-TYPE 817  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX3 MUTATED     25    0
  TBX3 WILD-TYPE  817   16
   clus
vv  TBX3 MUTATED TBX3 WILD-TYPE
  0           25            817
  1            0             16
[1] 2 2
[1] FALSE
D15V7, binary
                cls
clus               0   1
  TBX3 MUTATED    27   0
  TBX3 WILD-TYPE 941   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX3 MUTATED     27    0
  TBX3 WILD-TYPE  941    9
        clus
vv       TBX3 MUTATED TBX3 WILD-TYPE
  FEMALE           27            941
  MALE              0              9
[1] 2 2
[1] FALSE
D15V8, binary
                cls
clus               0   1
  TBX3 MUTATED    15  12
  TBX3 WILD-TYPE 372 490
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX3 MUTATED     15   12
  TBX3 WILD-TYPE  372  490
     clus
vv    TBX3 MUTATED TBX3 WILD-TYPE
  NO            15            372
  YES           12            490
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  TBX3 MUTATED                            0                            15
  TBX3 WILD-TYPE                          1                           696
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  TBX3 MUTATED                               11                   0
  TBX3 WILD-TYPE                            161                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  TBX3 MUTATED                       1                                0
  TBX3 WILD-TYPE                     5                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  TBX3 MUTATED                    0              0
  TBX3 WILD-TYPE                 14             40
D15V9, multiclass
                                  clus
vv                                 TBX3 MUTATED TBX3 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA              15            696
  INFILTRATING LOBULAR CARCINOMA             11            161
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       1              5
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              0             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TBX3 MUTATED                                  0     2
  TBX3 WILD-TYPE                                1    55
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  TBX3 MUTATED                           1    20
  TBX3 WILD-TYPE                       120   685
D15V11, multiclass
                                  clus
vv                                 TBX3 MUTATED TBX3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       2             55
  BLACK OR AFRICAN AMERICAN                   1            120
  WHITE                                      20            685
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V12, binary
                cls
clus               0   1
  TBX3 MUTATED     0  21
  TBX3 WILD-TYPE  34 751
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX3 MUTATED      0   21
  TBX3 WILD-TYPE   34  751
                        clus
vv                       TBX3 MUTATED TBX3 WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO           21            751
[1] 2 2
[1] FALSE

Clustering(16) Variable = RB1 MUTATION ANALYSIS
D16V1, survival
               sevent
clus2             0   1
  RB1 MUTATED    16   3
  RB1 WILD-TYPE 810 135
  RB1 MUTATED RB1 WILD-TYPE 
           19           945 
  RB1 MUTATED RB1 WILD-TYPE 
            3           135 
$`RB1 MUTATED`
TCGA-A1-A0SI TCGA-A2-A0YE TCGA-A2-A3XS TCGA-A8-A095 TCGA-A8-A09W TCGA-AN-A046 
       20.88        18.21        33.93        41.98         0.99         0.33 
TCGA-AN-A0FY TCGA-AR-A1AQ TCGA-B6-A0IG TCGA-BH-A0BW TCGA-BH-A0C7 TCGA-BH-A1FN 
        0.33        99.32       146.50        77.95        90.97        72.07 
TCGA-BH-A202 TCGA-C8-A275 TCGA-D8-A1XQ TCGA-E2-A159 TCGA-E9-A1RC TCGA-E9-A3HO 
       26.14         0.03        16.41        25.05        40.24        38.07 
TCGA-EW-A1PD 
       13.94 

$`RB1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SJ 
       14.37        43.43        48.10        14.27        47.24        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF 
       17.46        18.90        20.75        32.55        25.28        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XT 
       18.15       105.34        10.59        36.23        39.65        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.83         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ 
       25.15        29.56        23.74        20.61        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC 
       10.29        13.41        14.70        14.93        13.74        14.66 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       13.02        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A097 TCGA-A8-A099 
      112.08        43.00        40.01        30.97        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00        50.04        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
        8.98        19.04        15.02        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD 
       13.02        21.04         0.99        27.02        17.03        38.04 
TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
       19.23        22.95        73.91         5.72        22.26        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       26.04        74.14        33.04        19.33        14.66        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN 
        6.48        16.31        14.83        22.19        25.05        14.99 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y 
       15.48        23.24        24.79        16.80        14.96        17.42 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.33         0.23         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        1.71         9.96         7.36         7.46         0.16         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        0.33         0.33         6.44         5.65         7.96         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW 
        7.59         7.17         6.90         7.04         0.33         0.36 
TCGA-AN-A0FX TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.53         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        5.59        80.28        61.35        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       68.75        69.83        58.95        44.42        32.78        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       52.18        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        65.10 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       62.04        55.33        71.80       115.27       113.62       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03       102.31        98.27        82.68        70.42 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       60.56        53.88        40.57        20.45        97.08        82.62 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       11.51        24.79        26.93       130.09        15.62        32.52 
TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 
       84.10        23.31        64.83        55.86        65.36       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       134.14       125.16       108.36       101.00       103.86 
TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AS TCGA-AR-A1AT 
       97.68        96.00        86.07        93.90        37.81        41.82 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      104.28       112.77        97.84       105.27       102.84       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
       50.96        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       85.64        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IH 
       11.90       275.87       129.57        50.70        65.52       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BZ 
       74.14        76.60        85.87        77.75        49.94        74.14 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       41.75        46.39        89.06        81.73        77.98        67.10 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ 
       38.01        29.98        13.91        78.28        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        79.00        67.86        70.88        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB 
       15.68        14.30         9.63        44.81        81.83        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        63.32        30.35        10.78        15.16        63.39 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       53.26        24.56        23.08        41.00        52.96        26.50 
TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO 
       23.90        20.38         5.85         2.37        16.96         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
       13.61        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       53.98        55.50        28.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        36.82        36.79        20.12        10.52       110.60 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
       20.88        18.64        23.51        11.93        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
       12.66        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 
       12.66        48.53        12.56        12.16        13.51        12.59 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
       12.59        12.92        12.46        12.49        12.33        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN 
       11.34        11.28         0.16        12.03        12.33        12.95 
TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z 
       12.33        20.25        12.53        12.36        12.95        15.45 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
       16.87        16.70         9.76        24.56        14.43        33.99 
TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
       12.95        56.81        20.88        13.25        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA 
       14.17        13.48        19.20        14.17        17.49        16.50 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG 
       55.50        15.78        18.15        18.90        12.03        53.00 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       14.01        18.97        20.09        20.12        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 
       20.38        21.01        12.20        13.32        14.70        18.58 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       17.79        16.73        25.74        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       12.39        15.22        14.73        21.83        14.50        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU 
       17.69        55.30        15.85        16.31        16.64        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       15.16        43.04        16.54        15.32        15.52         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H 
       14.24        14.14        17.42        16.04        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P 
       14.43        48.03        16.41        13.48        17.06         1.61 
TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 
       10.09        13.08        12.53        12.26        33.37        18.51 
TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       21.67        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O 
       37.51        40.11        28.44        28.87        47.15        44.68 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       40.96        38.24        38.60        33.17        75.98        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       34.26        32.02        31.96        69.34        18.51        63.62 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15A 
       69.96        23.24        19.43        21.04        23.87        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       70.36        33.73        33.70        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 
       22.19        60.99        11.08        54.18        60.36        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       24.59        75.81        28.90       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        52.73        34.55        43.56         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        38.76        34.82        32.88        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       36.20        36.56        39.55        41.62        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       25.84        18.94         9.86        24.82        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02        11.15        48.23        45.01 
TCGA-E9-A1RB TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       32.09         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
       29.72         9.47        32.91        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW 
       23.84        26.70         0.79        25.81        26.40        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       28.77        25.94        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        29.82        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       18.90        19.99         6.15        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.52         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.84        11.57        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       47.01        64.21        86.96 

  RB1 MUTATED RB1 WILD-TYPE 
         0.03          0.16 
  RB1 MUTATED RB1 WILD-TYPE 
        146.5         282.9 
  RB1 MUTATED RB1 WILD-TYPE 
        26.14         30.97 
[1] "0.0 - 146.5 (26.1)" "0.2 - 282.9 (31.0)"
[1] "hr=" "1.1"
D16V2, continuous
               vv
clus            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  RB1 MUTATED         2        1        0        1         8         4
  RB1 WILD-TYPE      86       70        6        3       318       223
               vv
clus            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  RB1 MUTATED           0          1          1          1        0       0
  RB1 WILD-TYPE         2        136         23         56       15      12
D16V3, multiclass
            clus
vv           RB1 MUTATED RB1 WILD-TYPE
  STAGE I              2            86
  STAGE IA             1            70
  STAGE IB             0             6
  STAGE II             1             3
  STAGE IIA            8           318
  STAGE IIB            4           223
  STAGE III            0             2
  STAGE IIIA           1           136
  STAGE IIIB           1            23
  STAGE IIIC           1            56
  STAGE IV             0            15
  STAGE X              0            12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus             T1  T2  T3  T4
  RB1 MUTATED     6  12   0   1
  RB1 WILD-TYPE 251 552 120  34
D16V4, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  T1           6           251
  T2          12           552
  T3           0           120
  T4           1            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus             N0  N1  N2  N3
  RB1 MUTATED    10   6   1   2
  RB1 WILD-TYPE 452 319 106  66
D16V5, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  N0          10           452
  N1           6           319
  N2           1           106
  N3           2            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V6, binary
               cls
clus              0   1
  RB1 MUTATED    19   0
  RB1 WILD-TYPE 823  16
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED     19    0
  RB1 WILD-TYPE  823   16
   clus
vv  RB1 MUTATED RB1 WILD-TYPE
  0          19           823
  1           0            16
[1] 2 2
[1] FALSE
D16V7, binary
               cls
clus              0   1
  RB1 MUTATED    18   1
  RB1 WILD-TYPE 950   8
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED     18    1
  RB1 WILD-TYPE  950    8
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  FEMALE          18           950
  MALE             1             8
[1] 2 2
[1] FALSE
D16V8, binary
               cls
clus              0   1
  RB1 MUTATED     8   7
  RB1 WILD-TYPE 379 495
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      8    7
  RB1 WILD-TYPE  379  495
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  NO            8           379
  YES           7           495
[1] 2 2
[1] FALSE
               vv
clus            INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  RB1 MUTATED                            0                            16
  RB1 WILD-TYPE                          1                           695
               vv
clus            INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  RB1 MUTATED                                2                   0
  RB1 WILD-TYPE                            170                   5
               vv
clus            METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  RB1 MUTATED                       0                                1
  RB1 WILD-TYPE                     6                               26
               vv
clus            MUCINOUS CARCINOMA OTHER, SPECIFY
  RB1 MUTATED                    0              0
  RB1 WILD-TYPE                 14             40
D16V9, multiclass
                                  clus
vv                                 RB1 MUTATED RB1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                 0             1
  INFILTRATING DUCTAL CARCINOMA             16           695
  INFILTRATING LOBULAR CARCINOMA             2           170
  MEDULLARY CARCINOMA                        0             5
  METAPLASTIC CARCINOMA                      0             6
  MIXED HISTOLOGY (PLEASE SPECIFY)           1            26
  MUCINOUS CARCINOMA                         0            14
  OTHER, SPECIFY                             0            40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V10, continuous
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  RB1 MUTATED                                  0     1
  RB1 WILD-TYPE                                1    56
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  RB1 MUTATED                           2    14
  RB1 WILD-TYPE                       119   691
D16V11, multiclass
                                  clus
vv                                 RB1 MUTATED RB1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      1            56
  BLACK OR AFRICAN AMERICAN                  2           119
  WHITE                                     14           691
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V12, binary
               cls
clus              0   1
  RB1 MUTATED     1  16
  RB1 WILD-TYPE  33 756
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      1   16
  RB1 WILD-TYPE   33  756
                        clus
vv                       RB1 MUTATED RB1 WILD-TYPE
  HISPANIC OR LATINO               1            33
  NOT HISPANIC OR LATINO          16           756
[1] 2 2
[1] FALSE

Clustering(17) Variable = CTCF MUTATION ANALYSIS
D17V1, survival
                sevent
clus2              0   1
  CTCF MUTATED    15   0
  CTCF WILD-TYPE 811 138
  CTCF MUTATED CTCF WILD-TYPE 
            15            949 
  CTCF MUTATED CTCF WILD-TYPE 
             0            138 
$`CTCF MUTATED`
TCGA-A2-A0CQ TCGA-A2-A0YF TCGA-A8-A0AD TCGA-AN-A0AT TCGA-AN-A0FS TCGA-AO-A12B 
       88.60        50.47        38.04         0.33         6.90        98.27 
TCGA-B6-A0RI TCGA-BH-A0DH TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-E2-A156 TCGA-E2-A15T 
      234.28        38.01        24.95        42.35        23.87        51.39 
TCGA-E9-A1R0 TCGA-E9-A227 TCGA-EW-A1IY 
       28.27        32.05         8.48 

$`CTCF WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A1G4 TCGA-A2-A25A TCGA-A7-A0CD 
       19.20        63.12        36.13        19.56       107.70        38.30 
TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       23.61        31.36        24.26        23.80        21.73        22.32 
TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       11.28        11.97        11.05        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       27.02        17.03        19.23        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH 
       25.05        14.99        15.48        23.24        24.79        16.80 
TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 
       14.96        17.42         0.33         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0FD TCGA-AN-A0FF 
        7.46         0.16         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FT TCGA-AN-A0FV 
        7.96         7.00         7.59         7.17         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL 
        0.36         0.33         0.33         0.33         0.53         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       81.63        95.70        68.75        69.83        58.95        44.42 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       32.78        21.40        52.18        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       22.36        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        65.10        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12D 
      113.62       108.72       106.78       108.03       102.31        82.68 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       70.42        60.56        53.88        40.57        20.45        97.08 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 
       82.62        11.51        24.79        26.93       130.09        15.62 
TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 
       32.52        84.10        23.31        64.83        55.86        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      133.22        83.87       134.14       125.16       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
      103.86        97.68        96.00        86.07        93.90        99.32 
TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       37.81        41.82        94.29        61.28        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       33.73       160.90        50.89        94.22       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
      118.59         2.76       104.28       112.77        97.84       105.27 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
      102.84       105.30        50.96        98.76        98.66        89.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       99.62        93.30        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       40.54        33.30        38.96        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      281.29        32.58        11.90       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.52       146.50       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
      212.25       263.28       162.05       102.77       140.28        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      282.90       169.51        97.48       188.68        79.46        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       21.01       113.79       206.86       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       68.94        58.55        43.59       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
      170.17        37.87         7.07        85.35        74.99        68.12 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       18.84       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 
       25.55        63.09        81.44        37.74        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       70.22        84.13        51.58        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       18.21        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DI TCGA-BH-A0DK 
       90.97        81.73        77.98        67.10        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       78.28        15.65         3.22         2.56        79.00        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       70.88        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        81.83        24.49        31.00        63.32        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        63.39        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK 
       41.00        52.96        26.50        23.90        20.38         5.85 
TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
        2.37        16.96         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W7 
       51.32        27.25        50.79         5.59        23.93        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       17.69        25.81        31.53        97.48        25.08       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.83        33.99        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       110.60        20.88        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.49        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       23.24        19.43        21.04        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       14.07        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       28.50        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
        9.86        24.82        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
       42.25        37.74        39.09        38.37        41.03        41.72 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 
       40.73        40.50        20.12         0.69        38.99         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        7.13        24.56        12.33        29.72         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       32.91        30.18        30.44        23.90        23.84        26.70 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IZ 
        0.79        25.81        26.40        12.20        39.72        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX 
       18.90        13.25        16.57        28.77        25.94        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 
       29.85        40.41        41.13        39.78        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       18.48        30.08         7.86        18.90        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       13.94        10.52        34.55        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 
       25.91        22.09        34.03        17.49        17.52         7.40 
TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF 
      109.87        59.57       216.76        79.10        83.34        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      110.50        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       13.55        18.12         2.60        62.47        11.84        11.57 
TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 
       32.75        17.06        15.32        14.70        14.47        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       22.39         2.10        36.30        58.52        31.99        58.62 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 
       34.92        36.36        28.87        24.72        22.32        20.38 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD 
       26.70        23.47        65.62        41.92        47.01        64.21 
TCGA-PE-A5DE 
       86.96 

  CTCF MUTATED CTCF WILD-TYPE 
          0.33           0.03 
  CTCF MUTATED CTCF WILD-TYPE 
        234.28         282.90 
  CTCF MUTATED CTCF WILD-TYPE 
         38.01          30.61 
[1] "0.3 - 234.3 (38.0)" "0.0 - 282.9 (30.6)"
[1] "hr="     "9300000"
D17V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  CTCF MUTATED         4        2        0        0         7         2
  CTCF WILD-TYPE      84       69        6        4       319       225
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  CTCF MUTATED           0          0          1          0        0       0
  CTCF WILD-TYPE         2        137         23         57       15      12
D17V3, multiclass
            clus
vv           CTCF MUTATED CTCF WILD-TYPE
  STAGE I               4             84
  STAGE IA              2             69
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             7            319
  STAGE IIB             2            225
  STAGE III             0              2
  STAGE IIIA            0            137
  STAGE IIIB            1             23
  STAGE IIIC            0             57
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  CTCF MUTATED     8   7   0   1
  CTCF WILD-TYPE 249 557 120  34
D17V4, multiclass
    clus
vv   CTCF MUTATED CTCF WILD-TYPE
  T1            8            249
  T2            7            557
  T3            0            120
  T4            1             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  CTCF MUTATED    11   5   0   0
  CTCF WILD-TYPE 451 320 107  68
D17V5, multiclass
    clus
vv   CTCF MUTATED CTCF WILD-TYPE
  N0           11            451
  N1            5            320
  N2            0            107
  N3            0             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V6, binary
                cls
clus               0   1
  CTCF MUTATED    15   0
  CTCF WILD-TYPE 827  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTCF MUTATED     15    0
  CTCF WILD-TYPE  827   16
   clus
vv  CTCF MUTATED CTCF WILD-TYPE
  0           15            827
  1            0             16
[1] 2 2
[1] FALSE
D17V7, binary
                cls
clus               0   1
  CTCF MUTATED    16   0
  CTCF WILD-TYPE 952   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTCF MUTATED     16    0
  CTCF WILD-TYPE  952    9
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  FEMALE           16            952
  MALE              0              9
[1] 2 2
[1] FALSE
D17V8, binary
                cls
clus               0   1
  CTCF MUTATED     9   6
  CTCF WILD-TYPE 378 496
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTCF MUTATED      9    6
  CTCF WILD-TYPE  378  496
     clus
vv    CTCF MUTATED CTCF WILD-TYPE
  NO             9            378
  YES            6            496
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  CTCF MUTATED                            0                            14
  CTCF WILD-TYPE                          1                           697
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  CTCF MUTATED                                1                   0
  CTCF WILD-TYPE                            171                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  CTCF MUTATED                       0                                1
  CTCF WILD-TYPE                     6                               26
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  CTCF MUTATED                    0              0
  CTCF WILD-TYPE                 14             40
D17V9, multiclass
                                  clus
vv                                 CTCF MUTATED CTCF WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA              14            697
  INFILTRATING LOBULAR CARCINOMA              1            171
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            1             26
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              0             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CTCF MUTATED                                  0     2
  CTCF WILD-TYPE                                1    55
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  CTCF MUTATED                           2    11
  CTCF WILD-TYPE                       119   694
D17V11, multiclass
                                  clus
vv                                 CTCF MUTATED CTCF WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       2             55
  BLACK OR AFRICAN AMERICAN                   2            119
  WHITE                                      11            694
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V12, binary
                cls
clus               0   1
  CTCF MUTATED     1  13
  CTCF WILD-TYPE  33 759
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTCF MUTATED      1   13
  CTCF WILD-TYPE   33  759
                        clus
vv                       CTCF MUTATED CTCF WILD-TYPE
  HISPANIC OR LATINO                1             33
  NOT HISPANIC OR LATINO           13            759
[1] 2 2
[1] FALSE

Clustering(18) Variable = RBMX MUTATION ANALYSIS
D18V1, survival
                sevent
clus2              0   1
  RBMX MUTATED    12   1
  RBMX WILD-TYPE 814 137
  RBMX MUTATED RBMX WILD-TYPE 
            13            951 
  RBMX MUTATED RBMX WILD-TYPE 
             1            137 
$`RBMX MUTATED`
TCGA-BH-A0B6 TCGA-A2-A0T5 TCGA-AN-A046 TCGA-AN-A0AR TCGA-AN-A0XU TCGA-AR-A251 
       81.63        17.46         0.33         0.33         0.33        99.62 
TCGA-BH-A0BG TCGA-BH-A0HK TCGA-D8-A1JF TCGA-D8-A1JH TCGA-D8-A27I TCGA-E2-A1LK 
       61.51         5.85        12.03        14.01        14.43         8.75 
TCGA-EW-A1PC 
        6.15 

$`RBMX WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       73.35        24.62        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        7.46         0.16         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        7.96         7.00         7.59         7.17         6.90         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        0.33         0.36         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       81.63        95.70        68.75        69.83        58.95        44.42 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       32.78        21.40        52.18        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       22.36        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        65.10        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
      113.62       108.72       106.78       108.03       102.31        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       97.08        82.62        11.51        24.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY 
       15.62        32.52        84.10        23.31        64.83        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        37.81        41.82        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       89.00        93.30        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       40.54        33.30        38.96        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      281.29        32.58        11.90       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.52       146.50       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28       263.28       162.05       102.77       140.28 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       282.90       169.51        97.48       188.68        79.46 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.01       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.55        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       68.12        18.84       103.63        71.15        62.93        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 
       20.45        25.55        63.09        81.44        37.74        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.16        70.22        84.13        51.58        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       32.02        18.21        43.53        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        81.73        77.98        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        78.28        15.65         3.22         2.56        79.00 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        70.88        16.27         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
        9.63        44.81        81.83        24.49        31.00        63.32 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        63.39        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI 
       23.08        41.00        52.96        26.50        23.90        20.38 
TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
        2.37        16.96         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       51.32        27.25        50.79         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       42.35        44.81        23.05        32.91         4.90        35.93 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
       20.12        90.84        26.66        72.56        37.74        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       55.63        37.55        66.05         7.36        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       69.93        91.99       113.82        82.85        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 
       55.69        49.58        17.69        25.81        31.53        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       25.08       114.15        33.17        74.73       122.83        33.99 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       63.35        55.00        45.63        72.07        53.98        55.50 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       28.14        26.14        38.60        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       36.82        36.79        20.12        10.52       110.60        20.88 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       18.64        23.51        11.93        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       48.53        12.56        12.16        13.51        12.59        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92        12.46        12.49        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
       11.28         0.16        12.03        12.33        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       20.25        12.53        12.36        12.95        15.45        16.87 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
       16.70         0.03         9.76        24.56        14.43        33.99 
TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
       12.95        56.81        20.88        13.25        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA 
       14.17        13.48        19.20        14.17        17.49        16.50 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JG TCGA-D8-A1JI 
       55.50        15.78        18.15        18.90        53.00        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27K 
       14.14        17.42        16.04        13.45        13.05        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A1LS 
       75.81        28.90       106.75       102.61        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW 
       23.84        26.70         0.79        25.81        26.40        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       28.77        25.94        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        29.82        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       18.90        19.99        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.52         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.84        11.57        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       47.01        64.21        86.96 

  RBMX MUTATED RBMX WILD-TYPE 
          0.33           0.03 
  RBMX MUTATED RBMX WILD-TYPE 
         99.62         282.90 
  RBMX MUTATED RBMX WILD-TYPE 
         12.03          31.00 
[1] "0.3 - 99.6 (12.0)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "1"  
D18V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  RBMX MUTATED         2        1        0        0         4         2
  RBMX WILD-TYPE      86       70        6        4       322       225
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  RBMX MUTATED           0          3          0          1        0       0
  RBMX WILD-TYPE         2        134         24         56       15      12
D18V3, multiclass
            clus
vv           RBMX MUTATED RBMX WILD-TYPE
  STAGE I               2             86
  STAGE IA              1             70
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             4            322
  STAGE IIB             2            225
  STAGE III             0              2
  STAGE IIIA            3            134
  STAGE IIIB            0             24
  STAGE IIIC            1             56
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  RBMX MUTATED     5   6   1   1
  RBMX WILD-TYPE 252 558 119  34
D18V4, multiclass
    clus
vv   RBMX MUTATED RBMX WILD-TYPE
  T1            5            252
  T2            6            558
  T3            1            119
  T4            1             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  RBMX MUTATED     8   1   3   1
  RBMX WILD-TYPE 454 324 104  67
D18V5, multiclass
    clus
vv   RBMX MUTATED RBMX WILD-TYPE
  N0            8            454
  N1            1            324
  N2            3            104
  N3            1             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V6, binary
                cls
clus               0   1
  RBMX MUTATED    12   0
  RBMX WILD-TYPE 830  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  RBMX MUTATED     12    0
  RBMX WILD-TYPE  830   16
   clus
vv  RBMX MUTATED RBMX WILD-TYPE
  0           12            830
  1            0             16
[1] 2 2
[1] FALSE
D18V7, binary
                cls
clus               0   1
  RBMX MUTATED    13   0
  RBMX WILD-TYPE 955   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  RBMX MUTATED     13    0
  RBMX WILD-TYPE  955    9
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  FEMALE           13            955
  MALE              0              9
[1] 2 2
[1] FALSE
D18V8, binary
                cls
clus               0   1
  RBMX MUTATED     8   5
  RBMX WILD-TYPE 379 497
[1] "tbl2"
                cls
clus             [,1] [,2]
  RBMX MUTATED      8    5
  RBMX WILD-TYPE  379  497
     clus
vv    RBMX MUTATED RBMX WILD-TYPE
  NO             8            379
  YES            5            497
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  RBMX MUTATED                            0                            12
  RBMX WILD-TYPE                          1                           699
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  RBMX MUTATED                                1                   0
  RBMX WILD-TYPE                            171                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  RBMX MUTATED                       0                                0
  RBMX WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  RBMX MUTATED                    0              0
  RBMX WILD-TYPE                 14             40
D18V9, multiclass
                                  clus
vv                                 RBMX MUTATED RBMX WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA              12            699
  INFILTRATING LOBULAR CARCINOMA              1            171
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              0             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  RBMX MUTATED                                  0     0
  RBMX WILD-TYPE                                1    57
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  RBMX MUTATED                           2    11
  RBMX WILD-TYPE                       119   694
D18V11, multiclass
                                  clus
vv                                 RBMX MUTATED RBMX WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             57
  BLACK OR AFRICAN AMERICAN                   2            119
  WHITE                                      11            694
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V12, binary
                cls
clus               0   1
  RBMX MUTATED     0  12
  RBMX WILD-TYPE  34 760
[1] "tbl2"
                cls
clus             [,1] [,2]
  RBMX MUTATED      0   12
  RBMX WILD-TYPE   34  760
                        clus
vv                       RBMX MUTATED RBMX WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO           12            760
[1] 2 2
[1] FALSE

Clustering(19) Variable = HRNR MUTATION ANALYSIS
D19V1, survival
                sevent
clus2              0   1
  HRNR MUTATED    30   1
  HRNR WILD-TYPE 796 137
  HRNR MUTATED HRNR WILD-TYPE 
            31            933 
  HRNR MUTATED HRNR WILD-TYPE 
             1            137 
$`HRNR MUTATED`
TCGA-A1-A0SP TCGA-A7-A0DB TCGA-A8-A06X TCGA-A8-A07L TCGA-AC-A3HN TCGA-AN-A046 
       19.20        33.11        31.00        32.05        16.31         0.33 
TCGA-AN-A0AL TCGA-AO-A03N TCGA-AO-A03R TCGA-AO-A0J7 TCGA-AO-A0JD TCGA-AO-A126 
        7.46        66.77        68.75        20.32        72.00       108.72 
TCGA-AO-A128 TCGA-AO-A12E TCGA-AR-A2LM TCGA-B6-A1KC TCGA-BH-A0B7 TCGA-BH-A0BM 
      106.78        70.42        63.62        43.59        84.13        61.68 
TCGA-BH-A0DL TCGA-BH-A0E1 TCGA-C8-A135 TCGA-D8-A1XF TCGA-E2-A154 TCGA-E2-A1B5 
       78.28        15.68        12.92        15.22        19.43        32.35 
TCGA-E2-A1LB TCGA-E2-A2P6 TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A243 TCGA-GM-A2DM 
       75.81        34.55        41.72        40.73        20.12       106.06 
TCGA-OL-A5RW 
       36.36 

$`HRNR WILD-TYPE`
TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A TCGA-A7-A0CD 
       63.12        36.13        88.60        19.56       107.70        38.30 
TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       23.61        31.36        24.26        23.80        21.73        22.32 
TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       11.28        11.97        11.05        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DC TCGA-A7-A13D 
       35.47        30.61        37.45        35.67        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06Y 
       10.72        13.02        13.02         1.02        17.98        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07P 
       18.97        18.97        14.01        12.00         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 
        8.98        24.99         9.99        45.07        18.05        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I 
       13.02         0.99        38.01        28.96        19.96        12.00 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T 
       37.05         9.99        31.00        31.00         0.99       112.08 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       43.00        40.01        30.97        41.98        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00        50.04        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       19.04        13.02        21.04         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       38.04        19.23        22.95        73.91         5.72        22.26 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
       73.05        99.35        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       87.12        26.04        74.14        33.04        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN 
       32.45         6.48        14.83        22.19        25.05        14.99 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y 
       15.48        23.24        24.79        16.80        14.96        17.42 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.33         0.23         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        1.71         9.96         7.36         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.53         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03T 
        5.59        80.28        61.35        81.63        95.70        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       37.48        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        65.10        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12F 
      113.62       108.03       102.31        98.27        82.68        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       23.31        64.83        55.86        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      134.14       125.16       108.36       101.00       103.86        97.68 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT 
       96.00        86.07        93.90        99.32        37.81        41.82 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      104.28       112.77        97.84       105.27       102.84       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
       50.96        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       85.64        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       54.21        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 
       10.59        77.62       143.38       281.29        32.58        11.90 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        74.99        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B8 TCGA-BH-A0B9 
       37.74        39.55        39.16        70.22        51.58        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ 
       37.22        32.02        18.21        43.53        61.51        21.70 
TCGA-BH-A0BL TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       74.89        72.23        75.48        74.14        76.60        85.87 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       77.75        49.94        77.95        74.14        41.75        46.39 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        81.73        77.98        67.10        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       29.98        13.91        15.65         3.22         2.56        79.00 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E2 TCGA-BH-A0E6 
       67.86        70.88        16.27         4.41        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        81.83        24.49        31.00        63.32        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        63.39        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK 
       41.00        52.96        26.50        23.90        20.38         5.85 
TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
        2.37        16.96         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       51.32        27.25        50.79         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       42.35        44.81        23.05        32.91         4.90        35.93 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
       20.12        90.84        26.66        72.56        37.74        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       55.63        37.55        66.05         7.36        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       69.93        91.99       113.82        82.85        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 
       55.69        49.58        17.69        25.81        31.53        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       25.08       114.15        33.17        74.73       122.83        33.99 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       63.35        55.00        45.63        72.07        53.98        55.50 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       28.14        26.14        38.60        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       36.82        36.79        20.12        10.52       110.60        20.88 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       18.64        23.51        11.93        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       48.53        12.56        12.16        13.51        12.59        12.59 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
        0.16        12.03        12.33        12.95        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.53        12.36        12.95        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       23.24        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       28.50        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LE 
       11.08        54.18        60.36        19.66        24.59        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A3DX 
      106.75       102.61         8.75        43.04        52.73        43.56 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 
        8.28        30.61        34.92        38.76        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       36.82        34.16        36.20        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ 
       35.77        35.24        25.84        18.94         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 
       28.27        34.95         2.56         6.12         3.02        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE 
       48.23        45.01        32.09        40.24         1.12        46.65 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
        6.58        21.27        46.59        47.64        34.45        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22H 
       42.25        37.74        39.09        38.37        41.03        40.50 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
       86.96       115.69       101.62       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       69.30        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM 
       62.47        11.84        11.57        32.75        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.70        14.47        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY 
       58.52        31.99        58.62        34.92        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       47.01        64.21        86.96 

  HRNR MUTATED HRNR WILD-TYPE 
          0.33           0.03 
  HRNR MUTATED HRNR WILD-TYPE 
        108.72         282.90 
  HRNR MUTATED HRNR WILD-TYPE 
         36.36          30.18 
[1] "0.3 - 108.7 (36.4)" "0.0 - 282.9 (30.2)"
[1] "hr=" "4.8"
D19V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  HRNR MUTATED         1        0        0        1        12        13
  HRNR WILD-TYPE      87       71        6        3       314       214
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  HRNR MUTATED           0          3          1          0        0       0
  HRNR WILD-TYPE         2        134         23         57       15      12
D19V3, multiclass
            clus
vv           HRNR MUTATED HRNR WILD-TYPE
  STAGE I               1             87
  STAGE IA              0             71
  STAGE IB              0              6
  STAGE II              1              3
  STAGE IIA            12            314
  STAGE IIB            13            214
  STAGE III             0              2
  STAGE IIIA            3            134
  STAGE IIIB            1             23
  STAGE IIIC            0             57
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  HRNR MUTATED     3  23   4   1
  HRNR WILD-TYPE 254 541 116  34
D19V4, multiclass
    clus
vv   HRNR MUTATED HRNR WILD-TYPE
  T1            3            254
  T2           23            541
  T3            4            116
  T4            1             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  HRNR MUTATED    15  15   1   0
  HRNR WILD-TYPE 447 310 106  68
D19V5, multiclass
    clus
vv   HRNR MUTATED HRNR WILD-TYPE
  N0           15            447
  N1           15            310
  N2            1            106
  N3            0             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V6, binary
                cls
clus               0   1
  HRNR MUTATED    29   0
  HRNR WILD-TYPE 813  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  HRNR MUTATED     29    0
  HRNR WILD-TYPE  813   16
   clus
vv  HRNR MUTATED HRNR WILD-TYPE
  0           29            813
  1            0             16
[1] 2 2
[1] FALSE
D19V7, binary
                cls
clus               0   1
  HRNR MUTATED    31   0
  HRNR WILD-TYPE 937   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  HRNR MUTATED     31    0
  HRNR WILD-TYPE  937    9
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  FEMALE           31            937
  MALE              0              9
[1] 2 2
[1] FALSE
D19V8, binary
                cls
clus               0   1
  HRNR MUTATED    11  19
  HRNR WILD-TYPE 376 483
[1] "tbl2"
                cls
clus             [,1] [,2]
  HRNR MUTATED     11   19
  HRNR WILD-TYPE  376  483
     clus
vv    HRNR MUTATED HRNR WILD-TYPE
  NO            11            376
  YES           19            483
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  HRNR MUTATED                            0                            24
  HRNR WILD-TYPE                          1                           687
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  HRNR MUTATED                                5                   0
  HRNR WILD-TYPE                            167                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  HRNR MUTATED                       0                                0
  HRNR WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  HRNR MUTATED                    0              2
  HRNR WILD-TYPE                 14             38
D19V9, multiclass
                                  clus
vv                                 HRNR MUTATED HRNR WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA              24            687
  INFILTRATING LOBULAR CARCINOMA              5            167
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              2             38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  HRNR MUTATED                                  0     2
  HRNR WILD-TYPE                                1    55
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  HRNR MUTATED                           2    23
  HRNR WILD-TYPE                       119   682
D19V11, multiclass
                                  clus
vv                                 HRNR MUTATED HRNR WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       2             55
  BLACK OR AFRICAN AMERICAN                   2            119
  WHITE                                      23            682
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V12, binary
                cls
clus               0   1
  HRNR MUTATED     2  24
  HRNR WILD-TYPE  32 748
[1] "tbl2"
                cls
clus             [,1] [,2]
  HRNR MUTATED      2   24
  HRNR WILD-TYPE   32  748
                        clus
vv                       HRNR MUTATED HRNR WILD-TYPE
  HISPANIC OR LATINO                2             32
  NOT HISPANIC OR LATINO           24            748
[1] 2 2
[1] FALSE

Clustering(20) Variable = ZMYM3 MUTATION ANALYSIS
D20V1, survival
                 sevent
clus2               0   1
  ZMYM3 MUTATED    14   1
  ZMYM3 WILD-TYPE 812 137
  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
             15             949 
  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
              1             137 
$`ZMYM3 MUTATED`
TCGA-A1-A0SP TCGA-A2-A0T2 TCGA-A7-A4SF TCGA-AN-A046 TCGA-AN-A0AK TCGA-B6-A0I5 
       19.20         8.38        17.92         0.33         7.36       281.29 
TCGA-BH-A0B3 TCGA-BH-A0E7 TCGA-BH-A0HA TCGA-BH-A18G TCGA-BH-A2L8 TCGA-C8-A12Z 
       39.55        44.81        52.96         4.90        20.12        12.56 
TCGA-D8-A141 TCGA-D8-A1X8 TCGA-PE-A5DD 
       20.58        25.74        64.21 

$`ZMYM3 WILD-TYPE`
TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A TCGA-A7-A0CD 
       63.12        36.13        88.60        19.56       107.70        38.30 
TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       23.61        31.36        24.26        23.80        21.73        22.32 
TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       11.28        11.97        11.05        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.52        17.13        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.66        14.50        21.17        14.73        12.10        10.72 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       13.02        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        43.00        40.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N 
        9.99         9.99        12.00        50.04        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       17.03        38.04        19.23        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH 
       25.05        14.99        15.48        23.24        24.79        16.80 
TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 
       14.96        17.42         0.33         0.33         0.23         0.62 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AM 
        2.96         1.78         1.71         9.96         7.46         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.33         0.33         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV 
        7.00         7.59         7.17         6.90         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL 
        0.36         0.33         0.33         0.33         0.53         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       81.63        95.70        68.75        69.83        58.95        44.42 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       32.78        21.40        52.18        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       22.36        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        65.10        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
      113.62       108.72       106.78       108.03       102.31        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       97.08        82.62        11.51        24.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY 
       15.62        32.52        84.10        23.31        64.83        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        37.81        41.82        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       89.00        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        54.21        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      143.38        32.58        11.90       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.52       146.50       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28       263.28       162.05       102.77       140.28 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       282.90       169.51        97.48       188.68        79.46 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.01       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.55        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       68.12        18.84       103.63        71.15        62.93        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B4 
       20.45        25.55        63.09        81.44        37.74        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       70.22        84.13        51.58        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       18.21        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        81.73        77.98        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        78.28        15.65         3.22         2.56        79.00 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        70.88        16.27         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
        9.63        81.83        24.49        31.00        63.32        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        63.39        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       41.00        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       44.81        23.05        32.91        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       17.69        25.81        31.53        97.48        25.08       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.83        33.99        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       10.52       110.60        20.88        18.64        23.51        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        12.66        48.53        12.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       12.59        12.59        12.92        12.46        12.49        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM 
       10.92        11.34        11.28         0.16        12.03        12.33 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y 
       12.95        12.33        20.25        12.53        12.36        12.95 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       15.45        16.87        16.70         0.03         9.76        24.56 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       14.43        33.99        12.95        56.81        20.88        13.25 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 
       13.97        14.17        13.48        19.20        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF 
       16.50        55.50        15.78        18.15        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL 
       53.00        14.01        18.97        20.09        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       19.40        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       18.58        17.79        16.73        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       12.39        15.22        14.73        21.83        14.50        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       17.69        55.30        16.41        15.85        16.31        16.64 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 
       12.99        15.16        43.04        16.54        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
        9.93        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       13.05        14.43        48.03        16.41        13.48        17.06 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        1.61        10.09        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 
       18.51        21.67        43.00        34.42        27.52        46.59 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       40.41        37.51        40.11        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T 
       44.68        40.96        38.24        38.60        33.17        75.98 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       43.33        34.26        32.02        31.96        69.34        18.51 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       63.62        69.96        23.24        19.43        21.04        23.87 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       25.05        23.34        22.82        17.29        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        55.63        53.92         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ 
       11.05        19.56        56.94        14.07        51.39        76.57 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD 
       53.62        87.22        33.01        32.35        28.50        37.25 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ 
       77.65        37.41        70.36        33.73        33.70        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       59.18         3.88        22.19        60.99        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH 
       60.36        19.66        24.59        75.81        28.90       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX 
      102.61         8.75        43.04        52.73        34.55        43.56 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 
        8.28        30.61        34.92        38.76        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       36.82        34.16        36.20        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ 
       35.77        35.24        25.84        18.94         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 
       28.27        34.95         2.56         6.12         3.02        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE 
       48.23        45.01        32.09        40.24         1.12        46.65 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
        6.58        21.27        46.59        47.64        34.45        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
       42.25        37.74        39.09        38.37        41.03        41.72 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 
       40.73        40.50        20.12         0.69        38.99         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        7.13        24.56        12.33        29.72         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       32.91        30.18        30.44        23.90        23.84        26.70 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
        0.79        25.81        26.40        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV 
       18.21        18.90        13.25        16.57        28.77        25.94 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 
       29.95        29.85        40.41        41.13        39.78        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       23.11        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
        6.15        13.94        10.52        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        17.52 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
        7.40       109.87        59.57       216.76        79.10        83.34 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
      101.62       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       11.57        32.75        17.06        15.32        14.70        14.47 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       27.91        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DE 
       86.96 

  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
           0.33            0.03 
  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
         281.29          282.90 
  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
          20.12           31.00 
[1] "0.3 - 281.3 (20.1)" "0.0 - 282.9 (31.0)"
[1] "hr=" "2.1"
D20V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  ZMYM3 MUTATED         1        1        0        0         6         4
  ZMYM3 WILD-TYPE      87       70        6        4       320       223
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  ZMYM3 MUTATED           0          1          0          0        1       0
  ZMYM3 WILD-TYPE         2        136         24         57       14      12
D20V3, multiclass
            clus
vv           ZMYM3 MUTATED ZMYM3 WILD-TYPE
  STAGE I                1              87
  STAGE IA               1              70
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              6             320
  STAGE IIB              4             223
  STAGE III              0               2
  STAGE IIIA             1             136
  STAGE IIIB             0              24
  STAGE IIIC             0              57
  STAGE IV               1              14
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  ZMYM3 MUTATED     4  10   1   0
  ZMYM3 WILD-TYPE 253 554 119  35
D20V4, multiclass
    clus
vv   ZMYM3 MUTATED ZMYM3 WILD-TYPE
  T1             4             253
  T2            10             554
  T3             1             119
  T4             0              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  ZMYM3 MUTATED     8   5   1   1
  ZMYM3 WILD-TYPE 454 320 106  67
D20V5, multiclass
    clus
vv   ZMYM3 MUTATED ZMYM3 WILD-TYPE
  N0             8             454
  N1             5             320
  N2             1             106
  N3             1              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V6, binary
                 cls
clus                0   1
  ZMYM3 MUTATED    14   1
  ZMYM3 WILD-TYPE 828  15
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMYM3 MUTATED     14    1
  ZMYM3 WILD-TYPE  828   15
   clus
vv  ZMYM3 MUTATED ZMYM3 WILD-TYPE
  0            14             828
  1             1              15
[1] 2 2
[1] FALSE
D20V7, binary
                 cls
clus                0   1
  ZMYM3 MUTATED    15   0
  ZMYM3 WILD-TYPE 953   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMYM3 MUTATED     15    0
  ZMYM3 WILD-TYPE  953    9
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  FEMALE            15             953
  MALE               0               9
[1] 2 2
[1] FALSE
D20V8, binary
                 cls
clus                0   1
  ZMYM3 MUTATED     8   6
  ZMYM3 WILD-TYPE 379 496
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMYM3 MUTATED      8    6
  ZMYM3 WILD-TYPE  379  496
     clus
vv    ZMYM3 MUTATED ZMYM3 WILD-TYPE
  NO              8             379
  YES             6             496
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  ZMYM3 MUTATED                            0                            12
  ZMYM3 WILD-TYPE                          1                           699
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  ZMYM3 MUTATED                                3                   0
  ZMYM3 WILD-TYPE                            169                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  ZMYM3 MUTATED                       0                                0
  ZMYM3 WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  ZMYM3 MUTATED                    0              0
  ZMYM3 WILD-TYPE                 14             40
D20V9, multiclass
                                  clus
vv                                 ZMYM3 MUTATED ZMYM3 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA               12             699
  INFILTRATING LOBULAR CARCINOMA               3             169
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               0              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ZMYM3 MUTATED                                  0     2
  ZMYM3 WILD-TYPE                                1    55
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  ZMYM3 MUTATED                           1    11
  ZMYM3 WILD-TYPE                       120   694
D20V11, multiclass
                                  clus
vv                                 ZMYM3 MUTATED ZMYM3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        2              55
  BLACK OR AFRICAN AMERICAN                    1             120
  WHITE                                       11             694
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V12, binary
                 cls
clus                0   1
  ZMYM3 MUTATED     0  13
  ZMYM3 WILD-TYPE  34 759
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMYM3 MUTATED      0   13
  ZMYM3 WILD-TYPE   34  759
                        clus
vv                       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO            13             759
[1] 2 2
[1] FALSE

Clustering(21) Variable = NCOR1 MUTATION ANALYSIS
D21V1, survival
                 sevent
clus2               0   1
  NCOR1 MUTATED    32   6
  NCOR1 WILD-TYPE 794 132
  NCOR1 MUTATED NCOR1 WILD-TYPE 
             38             926 
  NCOR1 MUTATED NCOR1 WILD-TYPE 
              6             132 
$`NCOR1 MUTATED`
TCGA-A7-A426 TCGA-A8-A093 TCGA-A8-A09I TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-A1-A0SN 
       11.97        17.95        45.07        24.62        81.63        39.32 
TCGA-A2-A0CO TCGA-A2-A0EV TCGA-A2-A0T5 TCGA-A2-A0YC TCGA-A8-A08R TCGA-A8-A0A6 
      114.81        31.82        17.46        32.55         0.99        21.04 
TCGA-AC-A23C TCGA-AC-A23E TCGA-AN-A046 TCGA-AN-A0AK TCGA-AO-A128 TCGA-AR-A251 
       19.23        22.95         0.33         7.36       106.78        99.62 
TCGA-AR-A2LE TCGA-B6-A0I6 TCGA-B6-A0WY TCGA-BH-A0H3 TCGA-BH-A0HP TCGA-BH-A1FC 
      166.42        32.58       113.79        63.39        13.61       114.15 
TCGA-D8-A1JA TCGA-D8-A1JD TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A27G TCGA-E2-A105 
       16.50        18.15        20.09        20.12        13.45        43.00 
TCGA-E9-A1NF TCGA-E9-A1RF TCGA-E9-A22G TCGA-EW-A1IZ TCGA-GM-A2DN TCGA-LL-A5YL 
       35.24         6.58        40.73        18.21       101.62        17.06 
TCGA-OL-A5D8 TCGA-OL-A5RX 
       31.99        28.87 

$`NCOR1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       22.32        11.28        11.05        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A09C TCGA-A8-A09E 
       15.06        33.01        33.01        33.01         1.02        49.05 
TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X 
       29.98        16.57        19.79        14.53        19.33        13.71 
TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM 
       50.24        17.79         5.65         2.56        32.91        98.33 
TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM TCGA-BH-A0DO TCGA-BH-A0EA 
       17.23        66.15        57.27        73.35        54.05        32.58 
TCGA-BH-A18H TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O 
       21.44        89.16        10.42        21.14        14.79        50.79 
TCGA-E2-A1BC TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 
       16.47        73.64        50.07        26.99        15.68        52.96 
TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU 
       75.02        85.35        24.95        25.05        14.79        40.08 
TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH 
        8.52        14.37        43.43        48.10        14.27        47.24 
TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SQ TCGA-A2-A04N 
       20.88        13.68        31.79         7.96        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CP TCGA-A2-A0CR 
       55.43       136.73        99.12        24.79        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       72.00        35.05        34.29        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T6 
       17.52        17.13         8.38        49.84        20.52        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH 
       20.75        25.28        18.21        50.47        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT 
       49.48        18.61        19.33        48.46        31.73        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       23.47        17.36        60.72        22.45        20.25        19.20 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E 
       16.47        52.47        42.44        17.19        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU 
       10.59        36.23        39.65        33.93        91.07        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       32.75        56.28        47.31        35.93        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        35.31        34.29        35.47        30.61        37.45 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F 
       35.67        33.11        29.79        31.73        20.19        25.15 
TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       29.56        23.74        20.61        11.34        10.59        10.29 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD 
       13.41        14.70        14.93        13.74        14.66        14.50 
TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O 
       21.17        17.92        14.73        12.10        10.72        13.02 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z 
       13.02         1.02        17.98        31.00        26.01         1.02 
TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F 
       17.03        53.98         9.01        43.00        33.99        18.97 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 
        8.98        24.99         9.99        45.07        18.05        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I 
       13.02         0.99        38.01        28.96        19.96        12.00 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08T TCGA-A8-A08X 
       37.05         9.99        31.00        31.00       112.08        43.00 
TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A 
       40.01        30.97        41.98        12.00         9.99         9.99 
TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R 
       12.00        50.04        33.07         1.02        25.02         8.98 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       19.04        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23G 
       13.02         0.99        27.02        17.03        38.04        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL 
        0.62         2.96         1.78         1.71         9.96         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        0.16         0.33         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        7.96         7.00         7.59         7.17         6.90         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        0.33         0.36         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        69.83        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       44.42        32.78        21.40        52.18        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       72.00        76.77        65.10        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
      115.27       113.62       108.72       108.03       102.31        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       97.08        82.62        11.51        24.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY 
       15.62        32.52        84.10        23.31        64.83        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        37.81        41.82        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LH 
       89.00        93.30        85.64        71.05        93.83        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       86.53        54.21        63.62        38.17        39.39        40.54 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       33.30        38.96        10.59        77.62       143.38       281.29 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       11.90       275.87       129.57        50.70        65.52       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      263.28       162.05       102.77       140.28        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      169.51        97.48       188.68        79.46        18.35        21.01 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       15.16        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       26.50        23.90        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
        2.50        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FD TCGA-BH-A1FE 
       25.81        31.53        97.48        25.08        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN 
      122.83        33.99        63.35        55.00        45.63        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
       53.98        55.50        28.14        26.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       57.83       130.16        36.82        36.79        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M 
      110.60        20.88        18.64        23.51        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        48.53        12.56        12.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       12.59        12.59        12.92        12.46        12.49        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM 
       10.92        11.34        11.28         0.16        12.03        12.33 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y 
       12.95        12.33        20.25        12.53        12.36        12.95 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       15.45        16.87        16.70         0.03         9.76        24.56 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       14.43        33.99        12.95        56.81        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        13.97        14.17        13.48        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG 
       17.49        55.50        15.78        18.90        12.03        53.00 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       14.01        18.97        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       14.14        17.42        16.04        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A107 
       12.53        12.26        33.37        18.51        21.67        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       27.52        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.87        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        75.98        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       69.34        18.51        63.62        69.96        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       20.71        21.63        18.21        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        11.05        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       28.50        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       39.55        41.62        35.77        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
       46.65        21.27        46.59        47.64        34.45        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
       42.25        37.74        39.09        38.37        41.03        41.72 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       40.50        20.12         0.69        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       24.56        12.33        29.72         9.47        38.07        32.91 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       30.18        30.44        23.90        23.84        26.70         0.79 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1J1 
       25.81        26.40        12.20        39.72         8.48        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        28.77        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        17.52         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A3NW TCGA-GM-A3NY 
       85.15        86.96       115.69       106.06       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YM 
        2.60        62.47        11.84        11.57        32.75        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.70        14.47        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.52        58.62        34.92        36.36        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE 
       64.21        86.96 

  NCOR1 MUTATED NCOR1 WILD-TYPE 
           0.33            0.03 
  NCOR1 MUTATED NCOR1 WILD-TYPE 
         166.42          282.90 
  NCOR1 MUTATED NCOR1 WILD-TYPE 
         26.745          30.985 
[1] "0.3 - 166.4 (26.7)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.1"
D21V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  NCOR1 MUTATED         3        2        0        0        16         8
  NCOR1 WILD-TYPE      85       69        6        4       310       219
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  NCOR1 MUTATED           0          6          0          3        0       1
  NCOR1 WILD-TYPE         2        131         24         54       15      11
D21V3, multiclass
            clus
vv           NCOR1 MUTATED NCOR1 WILD-TYPE
  STAGE I                3              85
  STAGE IA               2              69
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA             16             310
  STAGE IIB              8             219
  STAGE III              0               2
  STAGE IIIA             6             131
  STAGE IIIB             0              24
  STAGE IIIC             3              54
  STAGE IV               0              15
  STAGE X                1              11
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  NCOR1 MUTATED     9  23   7   1
  NCOR1 WILD-TYPE 248 541 113  34
D21V4, multiclass
    clus
vv   NCOR1 MUTATED NCOR1 WILD-TYPE
  T1             9             248
  T2            23             541
  T3             7             113
  T4             1              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  NCOR1 MUTATED    20  11   4   3
  NCOR1 WILD-TYPE 442 314 103  65
D21V5, multiclass
    clus
vv   NCOR1 MUTATED NCOR1 WILD-TYPE
  N0            20             442
  N1            11             314
  N2             4             103
  N3             3              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V6, binary
                 cls
clus                0   1
  NCOR1 MUTATED    32   0
  NCOR1 WILD-TYPE 810  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCOR1 MUTATED     32    0
  NCOR1 WILD-TYPE  810   16
   clus
vv  NCOR1 MUTATED NCOR1 WILD-TYPE
  0            32             810
  1             0              16
[1] 2 2
[1] FALSE
D21V7, binary
                 cls
clus                0   1
  NCOR1 MUTATED    40   0
  NCOR1 WILD-TYPE 928   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCOR1 MUTATED     40    0
  NCOR1 WILD-TYPE  928    9
        clus
vv       NCOR1 MUTATED NCOR1 WILD-TYPE
  FEMALE            40             928
  MALE               0               9
[1] 2 2
[1] FALSE
D21V8, binary
                 cls
clus                0   1
  NCOR1 MUTATED    14  21
  NCOR1 WILD-TYPE 373 481
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCOR1 MUTATED     14   21
  NCOR1 WILD-TYPE  373  481
     clus
vv    NCOR1 MUTATED NCOR1 WILD-TYPE
  NO             14             373
  YES            21             481
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  NCOR1 MUTATED                            0                            30
  NCOR1 WILD-TYPE                          1                           681
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  NCOR1 MUTATED                                7                   1
  NCOR1 WILD-TYPE                            165                   4
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  NCOR1 MUTATED                       0                                1
  NCOR1 WILD-TYPE                     6                               26
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  NCOR1 MUTATED                    0              1
  NCOR1 WILD-TYPE                 14             39
D21V9, multiclass
                                  clus
vv                                 NCOR1 MUTATED NCOR1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA               30             681
  INFILTRATING LOBULAR CARCINOMA               7             165
  MEDULLARY CARCINOMA                          1               4
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             1              26
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               1              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NCOR1 MUTATED                                  0     0
  NCOR1 WILD-TYPE                                1    57
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  NCOR1 MUTATED                           4    31
  NCOR1 WILD-TYPE                       117   674
D21V11, multiclass
                                  clus
vv                                 NCOR1 MUTATED NCOR1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              57
  BLACK OR AFRICAN AMERICAN                    4             117
  WHITE                                       31             674
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V12, binary
                 cls
clus                0   1
  NCOR1 MUTATED     0  31
  NCOR1 WILD-TYPE  34 741
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCOR1 MUTATED      0   31
  NCOR1 WILD-TYPE   34  741
                        clus
vv                       NCOR1 MUTATED NCOR1 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO            31             741
[1] 2 2
[1] FALSE

Clustering(22) Variable = GPRIN2 MUTATION ANALYSIS
D22V1, survival
                  sevent
clus2                0   1
  GPRIN2 MUTATED     8   2
  GPRIN2 WILD-TYPE 818 136
  GPRIN2 MUTATED GPRIN2 WILD-TYPE 
              10              954 
  GPRIN2 MUTATED GPRIN2 WILD-TYPE 
               2              136 
$`GPRIN2 MUTATED`
TCGA-A7-A26F TCGA-A2-A0CX TCGA-AO-A12E TCGA-AR-A1AS TCGA-AR-A256 TCGA-B6-A0X0 
       24.26        56.81        70.42        37.81        93.83       129.70 
TCGA-B6-A408 TCGA-D8-A27G TCGA-E2-A14Y TCGA-E2-A15I 
       68.12        13.45        69.34        55.63 

$`GPRIN2 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       38.30        23.61        31.36        23.80        21.73        22.32 
TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       11.28        11.97        11.05        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CZ 
       77.19        75.25         5.19        98.99       107.93        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       17.52        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27       113.62       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G 
      108.03       102.31        98.27        82.68        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV 
       86.07        93.90        99.32        41.82        94.29        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L 
       86.53        86.43        33.73       160.90        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
      120.33        99.78       118.59         2.76       104.28       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       97.84       105.27       102.84       105.30        50.96        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       98.66        89.00        99.62        93.30        85.64        71.05 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        54.21        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
      143.38       281.29        32.58        11.90       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
       50.70        65.52       146.50       112.37       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      127.33        84.59       165.76       129.07       140.88       255.68 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
       68.45       212.25       234.28       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.28        89.46       282.90       169.51        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X1 
       79.46        18.35        21.01       113.79       206.86       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.55        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        74.99 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       18.84       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 
       25.55        63.09        81.44        37.74        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       70.22        84.13        51.58        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       18.21        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        81.73        77.98        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        78.28        15.65         3.22         2.56        79.00 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        70.88        16.27         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
        9.63        44.81        81.83        24.49        31.00        63.32 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        63.39        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI 
       23.08        41.00        52.96        26.50        23.90        20.38 
TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
        5.85         2.37        16.96         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
       12.89        51.32        27.25        50.79         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05        32.91         4.90 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
       35.93        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       30.28        55.63        37.55        66.05         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.16        69.93        91.99       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       12.00        55.69        49.58        17.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48        25.08       114.15        33.17        74.73       122.83 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
       33.99        63.35        55.00        45.63        72.07        53.98 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       55.50        28.14        26.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        36.82        36.79        20.12        10.52       110.60 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
       20.88        18.64        23.51        11.93        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
       12.66        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 
       12.66        48.53        12.56        12.16        13.51        12.59 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
       12.59        12.92        12.46        12.49        12.33        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN 
       11.34        11.28         0.16        12.03        12.33        12.95 
TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z 
       12.33        20.25        12.53        12.36        12.95        15.45 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B 
       16.87        16.70         0.03         9.76        24.56        14.43 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 
       33.99        12.95        56.81        20.88        13.25        20.58 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 
       13.97        14.17        13.48        19.20        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF 
       16.50        55.50        15.78        18.15        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL 
       53.00        14.01        18.97        20.09        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       19.40        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA 
       18.58        17.79        16.73        25.74        23.90        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK 
       18.15        12.39        15.22        14.73        21.83        14.50 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       19.92        17.69        55.30        16.41        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.64        12.99        15.16        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       15.52         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       13.05        14.43        48.03        16.41        13.48        17.06 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        1.61        10.09        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 
       18.51        21.67        43.00        34.42        27.52        46.59 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       40.41        37.51        40.11        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T 
       44.68        40.96        38.24        38.60        33.17        75.98 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Z TCGA-E2-A150 
       43.33        34.26        32.02        31.96        18.51        63.62 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 
       69.96        23.24        19.43        21.04        23.87        25.05 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G 
       23.34        22.82        17.29        20.71        21.63        18.21 
TCGA-E2-A15H TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       12.92        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       70.36        33.73        33.70        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 
       22.19        60.99        11.08        54.18        60.36        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       24.59        75.81        28.90       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        52.73        34.55        43.56         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        38.76        34.82        32.88        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       36.20        36.56        39.55        41.62        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       25.84        18.94         9.86        24.82        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02        11.15        48.23        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       32.09        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       20.12         0.69        38.99         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       12.33        29.72         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       26.40        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        28.77        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        17.52         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 
       18.12         2.60        62.47        11.84        11.57        32.75 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U 
       17.06        15.32        14.70        14.47        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  GPRIN2 MUTATED GPRIN2 WILD-TYPE 
           13.45             0.03 
  GPRIN2 MUTATED GPRIN2 WILD-TYPE 
           129.7            282.9 
  GPRIN2 MUTATED GPRIN2 WILD-TYPE 
          62.465           30.395 
[1] "13.4 - 129.7 (62.5)" "0.0 - 282.9 (30.4)" 
[1] "hr=" "1.2"
D22V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  GPRIN2 MUTATED         1        1        0        0         5         3
  GPRIN2 WILD-TYPE      87       70        6        4       321       224
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  GPRIN2 MUTATED           0          0          0          1        0       0
  GPRIN2 WILD-TYPE         2        137         24         56       15      12
D22V3, multiclass
            clus
vv           GPRIN2 MUTATED GPRIN2 WILD-TYPE
  STAGE I                 1               87
  STAGE IA                1               70
  STAGE IB                0                6
  STAGE II                0                4
  STAGE IIA               5              321
  STAGE IIB               3              224
  STAGE III               0                2
  STAGE IIIA              0              137
  STAGE IIIB              0               24
  STAGE IIIC              1               56
  STAGE IV                0               15
  STAGE X                 0               12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  GPRIN2 MUTATED     2   8   1   0
  GPRIN2 WILD-TYPE 255 556 119  35
D22V4, multiclass
    clus
vv   GPRIN2 MUTATED GPRIN2 WILD-TYPE
  T1              2              255
  T2              8              556
  T3              1              119
  T4              0               35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  GPRIN2 MUTATED     8   2   0   1
  GPRIN2 WILD-TYPE 454 323 107  67
D22V5, multiclass
    clus
vv   GPRIN2 MUTATED GPRIN2 WILD-TYPE
  N0              8              454
  N1              2              323
  N2              0              107
  N3              1               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V6, binary
                  cls
clus                 0   1
  GPRIN2 MUTATED    11   0
  GPRIN2 WILD-TYPE 831  16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPRIN2 MUTATED     11    0
  GPRIN2 WILD-TYPE  831   16
   clus
vv  GPRIN2 MUTATED GPRIN2 WILD-TYPE
  0             11              831
  1              0               16
[1] 2 2
[1] FALSE
D22V7, binary
                  cls
clus                 0   1
  GPRIN2 MUTATED    11   0
  GPRIN2 WILD-TYPE 957   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPRIN2 MUTATED     11    0
  GPRIN2 WILD-TYPE  957    9
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  FEMALE             11              957
  MALE                0                9
[1] 2 2
[1] FALSE
D22V8, binary
                  cls
clus                 0   1
  GPRIN2 MUTATED     5   5
  GPRIN2 WILD-TYPE 382 497
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPRIN2 MUTATED      5    5
  GPRIN2 WILD-TYPE  382  497
     clus
vv    GPRIN2 MUTATED GPRIN2 WILD-TYPE
  NO               5              382
  YES              5              497
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  GPRIN2 MUTATED                            0                             6
  GPRIN2 WILD-TYPE                          1                           705
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  GPRIN2 MUTATED                                2                   0
  GPRIN2 WILD-TYPE                            170                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  GPRIN2 MUTATED                       0                                1
  GPRIN2 WILD-TYPE                     6                               26
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  GPRIN2 MUTATED                    0              2
  GPRIN2 WILD-TYPE                 14             38
D22V9, multiclass
                                  clus
vv                                 GPRIN2 MUTATED GPRIN2 WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA                 6              705
  INFILTRATING LOBULAR CARCINOMA                2              170
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)              1               26
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                                2               38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  GPRIN2 MUTATED                                  0     2
  GPRIN2 WILD-TYPE                                1    55
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  GPRIN2 MUTATED                           1     8
  GPRIN2 WILD-TYPE                       120   697
D22V11, multiclass
                                  clus
vv                                 GPRIN2 MUTATED GPRIN2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         2               55
  BLACK OR AFRICAN AMERICAN                     1              120
  WHITE                                         8              697
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V12, binary
                  cls
clus                 0   1
  GPRIN2 MUTATED     0   9
  GPRIN2 WILD-TYPE  34 763
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPRIN2 MUTATED      0    9
  GPRIN2 WILD-TYPE   34  763
                        clus
vv                       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  HISPANIC OR LATINO                  0               34
  NOT HISPANIC OR LATINO              9              763
[1] 2 2
[1] FALSE

Clustering(23) Variable = SPEN MUTATION ANALYSIS
D23V1, survival
                sevent
clus2              0   1
  SPEN MUTATED    28   3
  SPEN WILD-TYPE 798 135
  SPEN MUTATED SPEN WILD-TYPE 
            31            933 
  SPEN MUTATED SPEN WILD-TYPE 
             3            135 
$`SPEN MUTATED`
TCGA-A8-A09I TCGA-BH-A0B6 TCGA-BH-A18H TCGA-A1-A0SJ TCGA-A2-A0EN TCGA-A2-A0EY 
       45.07        81.63        21.44        13.68       134.40        63.29 
TCGA-A2-A0T5 TCGA-A2-A0YI TCGA-A8-A07R TCGA-A8-A0A6 TCGA-AC-A23H TCGA-AC-A3TN 
       17.46        49.48         8.98        21.04         5.72        14.99 
TCGA-AN-A046 TCGA-AN-A0AK TCGA-AN-A0XU TCGA-AQ-A1H2 TCGA-AR-A0TX TCGA-AR-A2LE 
        0.33         7.36         0.33        15.62        64.83       166.42 
TCGA-B6-A0RI TCGA-B6-A0RO TCGA-BH-A0B8 TCGA-BH-A0HF TCGA-BH-A0HP TCGA-BH-A204 
      234.28       162.05        51.58        23.90        13.61        83.31 
TCGA-D8-A1J8 TCGA-D8-A1Y1 TCGA-E2-A15P TCGA-E2-A570 TCGA-EW-A1IZ TCGA-EW-A3E8 
       14.17         9.93        19.56        30.61        18.21        34.03 
TCGA-LQ-A4E4 
       27.91 

$`SPEN WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
        1.02        49.05        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 
       24.62        54.05        32.58        89.16        10.42        21.14 
TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 
       14.79        50.79        16.47        73.64        50.07        26.99 
TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y 
       15.68        52.96        75.02        85.35        24.95        25.05 
TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF 
       14.79        40.08         8.52        14.37        43.43        48.10 
TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN 
       14.27        47.24        20.88        31.79         7.96        39.32 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T 
       18.21       143.15        18.02        78.41       121.94        73.84 
TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM 
       87.25       101.98        55.43       136.73        99.12        24.79 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU 
      114.81        92.48       107.93        77.19        75.25         5.19 
TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 
       98.99       107.93        56.81        53.13        67.33        34.55 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EO TCGA-A2-A0EP 
       33.76        61.58        25.22       101.72        80.28       118.45 
TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV 
       79.76        74.40        72.00        35.05        34.29        31.82 
TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       61.94        24.72        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       20.52        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       50.47        21.90        21.67        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
        9.99        10.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        43.00        40.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N 
        9.99         9.99        12.00        50.04        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       12.00        19.04        13.02         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK 
       38.04        19.23        22.95        73.91        22.26        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       26.04        74.14        33.04        19.33        14.66        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3W7 
        6.48        16.31        14.83        22.19        25.05        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X 
       23.24        24.79        16.80        14.96        17.42         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.33         0.23         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        9.96         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27       113.62       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
      102.31        98.27        82.68        70.42        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TY 
       26.93       130.09        32.52        84.10        23.31        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        37.81        41.82        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       89.00        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       40.54        33.30        38.96        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      281.29        32.58        11.90       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.52       146.50       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RN TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      212.25       263.28       102.77       140.28        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      169.51        97.48       188.68        79.46        18.35        21.01 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       58.55        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 
       37.87         7.07        85.35        74.99        68.12        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
      103.63        71.15        62.93        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       63.09        81.44        37.74        39.55        39.16        70.22 
TCGA-BH-A0B7 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       84.13        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       52.96        26.50        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
        2.50        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       57.83       130.16        36.82        36.79        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M 
      110.60        20.88        18.64        23.51        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        48.53        12.56        12.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       12.59        12.59        12.92        12.46        12.49        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM 
       10.92        11.34        11.28         0.16        12.03        12.33 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y 
       12.95        12.33        20.25        12.53        12.36        12.95 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       15.45        16.87        16.70         0.03         9.76        24.56 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       14.43        33.99        12.95        56.81        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J9 
       20.58        13.97        14.17        13.48        19.20        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF 
       16.50        55.50        15.78        18.15        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL 
       53.00        14.01        18.97        20.09        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       19.40        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA 
       18.58        17.79        16.73        25.74        23.90        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK 
       18.15        12.39        15.22        14.73        21.83        14.50 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       19.92        17.69        55.30        16.41        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.64        12.99        15.16        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
       15.52        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       13.05        14.43        48.03        16.41        13.48        17.06 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        1.61        10.09        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 
       18.51        21.67        43.00        34.42        27.52        46.59 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       40.41        37.51        40.11        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T 
       44.68        40.96        38.24        38.60        33.17        75.98 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       43.33        34.26        32.02        31.96        69.34        18.51 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       63.62        69.96        23.24        19.43        21.04        23.87 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       25.05        23.34        22.82        17.29        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        55.63        53.92         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 
       11.05        56.94        14.07        51.39        76.57        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE 
       87.22        33.01        32.35        28.50        37.25        77.65 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.41        70.36        33.73        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
        3.88        22.19        60.99        11.08        54.18        60.36 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI 
       19.66        24.59        75.81        28.90       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
        8.75        43.04        52.73        34.55        43.56         8.28 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        38.76        34.82        32.88        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       36.20        36.56        39.55        41.62        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       25.84        18.94         9.86        24.82        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02        11.15        48.23        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       32.09        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       20.12         0.69        38.99         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       12.33        29.72         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1J1 TCGA-EW-A1J2 
       26.40        12.20        39.72         8.48        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA 
       17.49        17.52         7.40       109.87        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
       79.10        83.34        70.85        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      115.69       106.06       101.62       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       69.30        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM 
       62.47        11.84        11.57        32.75        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.70        14.47        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       47.01        64.21        86.96 

  SPEN MUTATED SPEN WILD-TYPE 
          0.33           0.03 
  SPEN MUTATED SPEN WILD-TYPE 
        234.28         282.90 
  SPEN MUTATED SPEN WILD-TYPE 
         21.44          31.00 
[1] "0.3 - 234.3 (21.4)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.9"
D23V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  SPEN MUTATED         4        3        1        0         8         6
  SPEN WILD-TYPE      84       68        5        4       318       221
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  SPEN MUTATED           0          6          2          2        0       0
  SPEN WILD-TYPE         2        131         22         55       15      12
D23V3, multiclass
            clus
vv           SPEN MUTATED SPEN WILD-TYPE
  STAGE I               4             84
  STAGE IA              3             68
  STAGE IB              1              5
  STAGE II              0              4
  STAGE IIA             8            318
  STAGE IIB             6            221
  STAGE III             0              2
  STAGE IIIA            6            131
  STAGE IIIB            2             22
  STAGE IIIC            2             55
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  SPEN MUTATED     9  14   7   2
  SPEN WILD-TYPE 248 550 113  33
D23V4, multiclass
    clus
vv   SPEN MUTATED SPEN WILD-TYPE
  T1            9            248
  T2           14            550
  T3            7            113
  T4            2             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  SPEN MUTATED    16  10   3   2
  SPEN WILD-TYPE 446 315 104  66
D23V5, multiclass
    clus
vv   SPEN MUTATED SPEN WILD-TYPE
  N0           16            446
  N1           10            315
  N2            3            104
  N3            2             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V6, binary
                cls
clus               0   1
  SPEN MUTATED    26   0
  SPEN WILD-TYPE 816  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  SPEN MUTATED     26    0
  SPEN WILD-TYPE  816   16
   clus
vv  SPEN MUTATED SPEN WILD-TYPE
  0           26            816
  1            0             16
[1] 2 2
[1] FALSE
D23V7, binary
                cls
clus               0   1
  SPEN MUTATED    32   0
  SPEN WILD-TYPE 936   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  SPEN MUTATED     32    0
  SPEN WILD-TYPE  936    9
        clus
vv       SPEN MUTATED SPEN WILD-TYPE
  FEMALE           32            936
  MALE              0              9
[1] 2 2
[1] FALSE
D23V8, binary
                cls
clus               0   1
  SPEN MUTATED    10  18
  SPEN WILD-TYPE 377 484
[1] "tbl2"
                cls
clus             [,1] [,2]
  SPEN MUTATED     10   18
  SPEN WILD-TYPE  377  484
     clus
vv    SPEN MUTATED SPEN WILD-TYPE
  NO            10            377
  YES           18            484
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  SPEN MUTATED                            0                            24
  SPEN WILD-TYPE                          1                           687
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  SPEN MUTATED                                8                   0
  SPEN WILD-TYPE                            164                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  SPEN MUTATED                       0                                0
  SPEN WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  SPEN MUTATED                    0              0
  SPEN WILD-TYPE                 14             40
D23V9, multiclass
                                  clus
vv                                 SPEN MUTATED SPEN WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA              24            687
  INFILTRATING LOBULAR CARCINOMA              8            164
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              0             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SPEN MUTATED                                  0     0
  SPEN WILD-TYPE                                1    57
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  SPEN MUTATED                           2    25
  SPEN WILD-TYPE                       119   680
D23V11, multiclass
                                  clus
vv                                 SPEN MUTATED SPEN WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             57
  BLACK OR AFRICAN AMERICAN                   2            119
  WHITE                                      25            680
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V12, binary
                cls
clus               0   1
  SPEN MUTATED     1  23
  SPEN WILD-TYPE  33 749
[1] "tbl2"
                cls
clus             [,1] [,2]
  SPEN MUTATED      1   23
  SPEN WILD-TYPE   33  749
                        clus
vv                       SPEN MUTATED SPEN WILD-TYPE
  HISPANIC OR LATINO                1             33
  NOT HISPANIC OR LATINO           23            749
[1] 2 2
[1] FALSE

Clustering(24) Variable = NF1 MUTATION ANALYSIS
D24V1, survival
               sevent
clus2             0   1
  NF1 MUTATED    23   5
  NF1 WILD-TYPE 803 133
  NF1 MUTATED NF1 WILD-TYPE 
           28           936 
  NF1 MUTATED NF1 WILD-TYPE 
            5           133 
$`NF1 MUTATED`
TCGA-E2-A1BC TCGA-A2-A04Q TCGA-A2-A0CR TCGA-A2-A0YK TCGA-A7-A0DC TCGA-A8-A06X 
       16.47        78.41       107.93        19.33        29.79        31.00 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23H TCGA-AC-A3TM TCGA-AC-A5EH TCGA-AN-A046 
       38.04        19.23         5.72        25.05        16.80         0.33 
TCGA-AN-A0AL TCGA-AN-A0XW TCGA-AO-A12H TCGA-AR-A1AW TCGA-B6-A0IB TCGA-B6-A0IK 
        7.46         5.59        40.57        86.53       129.57        18.77 
TCGA-BH-A0H9 TCGA-BH-A18F TCGA-BH-A18G TCGA-C8-A3M7 TCGA-D8-A1J8 TCGA-D8-A1JN 
       41.00        32.91         4.90        33.99        14.17        20.38 
TCGA-D8-A1XK TCGA-E2-A1LS TCGA-E9-A3QA TCGA-LL-A5YL 
       14.50        52.73        30.18        17.06 

$`NF1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1L8 
       89.16        10.42        21.14        14.79        50.79        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
      121.94        73.84        87.25       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CS TCGA-A2-A0CT 
       99.12        24.79       114.81        92.48        77.19        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 
        5.19        98.99       107.93        56.81        53.13        67.33 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       34.55        33.76        61.58        25.22       101.72       134.40 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
       80.28       118.45        79.76        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       34.29        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 
       54.64        27.12        44.88        50.43        44.28        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.13         8.38        49.84        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT 
       21.67        49.48        18.61        48.46        31.73        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       23.47        17.36        60.72        22.45        20.25        19.20 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E 
       16.47        52.47        42.44        17.19        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU 
       10.59        36.23        39.65        33.93        91.07        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       32.75        56.28        47.31        35.93        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        35.31        34.29        35.47        30.61        37.45 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H 
       35.67        33.11        31.73        20.19        25.15        29.56 
TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF 
       23.74        20.61        11.34        10.59        10.29        13.41 
TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE 
       14.70        14.93        13.74        14.66        14.50        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P 
       17.92        14.73        12.10        10.72        13.02        13.02 
TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
        1.02        17.98        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U 
       12.00        32.05         9.99        10.98         8.98        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        18.05        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       38.01        28.96        19.96        12.00        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       31.00        31.00         0.99       112.08        43.00        40.01 
TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       30.97        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       50.04        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-AC-A23E TCGA-AC-A23G 
       21.04         0.99        27.02        17.03        22.95        73.91 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5XU TCGA-AC-A62Y 
       14.99        15.48        23.24        24.79        14.96        17.42 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.33         0.23         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        1.71         9.96         7.36         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.53         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27       113.62       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.03       102.31        98.27        82.68        70.42        60.56 
TCGA-AO-A12G TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       53.88        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L 
       61.28        86.43        33.73       160.90        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
      120.33        99.78       118.59         2.76       104.28       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       97.84       105.27       102.84       105.30        50.96        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       98.66        89.00        99.62        93.30        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM 
       93.83       166.42        20.25        86.53        54.21        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       38.17        39.39        40.54        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA 
       77.62       143.38       281.29        32.58        11.90       275.87 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IM 
       50.70        65.52       146.50       112.37       233.62       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28       263.28       162.05       102.77       140.28 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       282.90       169.51        97.48       188.68        79.46 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.01       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.55        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       68.12        18.84       103.63        71.15        62.93        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 
       20.45        25.55        63.09        81.44        37.74        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.16        70.22        84.13        51.58        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        72.23        75.48        74.14        76.60        85.87 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       77.75        49.94        77.95        74.14        41.75        46.39 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        81.73        77.98        67.10        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       29.98        13.91        78.28        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       79.00        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30         9.63        44.81        81.83        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       63.32        30.35        10.78        15.16        63.39        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI 
       24.56        23.08        52.96        26.50        23.90        20.38 
TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
        5.85         2.37        16.96         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
       12.89        51.32        27.25        50.79         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18I TCGA-BH-A18J 
       24.95        42.35        44.81        23.05        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07        53.98        55.50        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       26.14        38.60        83.31        57.83       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.79        20.12        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
        0.16        12.03        12.33        12.95        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.53        12.36        12.95        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M8 TCGA-D8-A13Y 
        0.03         9.76        24.56        14.43        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       19.20        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       20.12        20.09        19.40        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        15.22        14.73        21.83 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       19.92        17.69        55.30        16.41        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.64        12.99        15.16        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       15.52         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43        48.03        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
       17.06         1.61        10.09        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       33.37        18.51        21.67        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       46.59        40.41        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       47.15        44.68        40.96        38.24        38.60        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       75.98        43.33        34.26        32.02        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       18.51        63.62        69.96        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        25.05        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       20.58        11.05        19.56        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       76.57        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       37.25        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX 
      106.75       102.61         8.75        43.04        34.55        43.56 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 
        8.28        30.61        34.92        38.76        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       36.82        34.16        36.20        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ 
       35.77        35.24        25.84        18.94         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 
       28.27        34.95         2.56         6.12         3.02        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE 
       48.23        45.01        32.09        40.24         1.12        46.65 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
        6.58        21.27        46.59        47.64        34.45        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
       42.25        37.74        39.09        38.37        41.03        41.72 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 
       40.73        40.50        20.12         0.69        38.99         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        7.13        24.56        12.33        29.72         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       32.91        30.44        23.90        23.84        26.70         0.79 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       25.81        26.40        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX 
       18.90        13.25        16.57        28.77        25.94        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 
       29.85        40.41        41.13        39.78        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       18.48        30.08         7.86        18.90        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       13.94        10.52        34.55        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 
       25.91        22.09        34.03        17.49        17.52         7.40 
TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF 
      109.87        59.57       216.76        79.10        83.34        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      110.50        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       13.55        18.12         2.60        62.47        11.84        11.57 
TCGA-LL-A441 TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U 
       32.75        15.32        14.70        14.47        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  NF1 MUTATED NF1 WILD-TYPE 
         0.33          0.03 
  NF1 MUTATED NF1 WILD-TYPE 
       129.57        282.90 
  NF1 MUTATED NF1 WILD-TYPE 
       22.715        31.000 
[1] "0.3 - 129.6 (22.7)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.8"
D24V2, continuous
               vv
clus            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  NF1 MUTATED         1        5        0        0         8         7
  NF1 WILD-TYPE      87       66        6        4       318       220
               vv
clus            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  NF1 MUTATED           0          2          3          1        1       0
  NF1 WILD-TYPE         2        135         21         56       14      12
D24V3, multiclass
            clus
vv           NF1 MUTATED NF1 WILD-TYPE
  STAGE I              1            87
  STAGE IA             5            66
  STAGE IB             0             6
  STAGE II             0             4
  STAGE IIA            8           318
  STAGE IIB            7           220
  STAGE III            0             2
  STAGE IIIA           2           135
  STAGE IIIB           3            21
  STAGE IIIC           1            56
  STAGE IV             1            14
  STAGE X              0            12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus             T1  T2  T3  T4
  NF1 MUTATED     6  14   5   3
  NF1 WILD-TYPE 251 550 115  32
D24V4, multiclass
    clus
vv   NF1 MUTATED NF1 WILD-TYPE
  T1           6           251
  T2          14           550
  T3           5           115
  T4           3            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus             N0  N1  N2  N3
  NF1 MUTATED    17   7   1   2
  NF1 WILD-TYPE 445 318 106  66
D24V5, multiclass
    clus
vv   NF1 MUTATED NF1 WILD-TYPE
  N0          17           445
  N1           7           318
  N2           1           106
  N3           2            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V6, binary
               cls
clus              0   1
  NF1 MUTATED    22   1
  NF1 WILD-TYPE 820  15
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED     22    1
  NF1 WILD-TYPE  820   15
   clus
vv  NF1 MUTATED NF1 WILD-TYPE
  0          22           820
  1           1            15
[1] 2 2
[1] FALSE
D24V7, binary
               cls
clus              0   1
  NF1 MUTATED    28   0
  NF1 WILD-TYPE 940   9
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED     28    0
  NF1 WILD-TYPE  940    9
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  FEMALE          28           940
  MALE             0             9
[1] 2 2
[1] FALSE
D24V8, binary
               cls
clus              0   1
  NF1 MUTATED    17  11
  NF1 WILD-TYPE 370 491
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED     17   11
  NF1 WILD-TYPE  370  491
     clus
vv    NF1 MUTATED NF1 WILD-TYPE
  NO           17           370
  YES          11           491
[1] 2 2
[1] FALSE
               vv
clus            INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  NF1 MUTATED                            0                            19
  NF1 WILD-TYPE                          1                           692
               vv
clus            INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  NF1 MUTATED                                6                   1
  NF1 WILD-TYPE                            166                   4
               vv
clus            METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  NF1 MUTATED                       0                                1
  NF1 WILD-TYPE                     6                               26
               vv
clus            MUCINOUS CARCINOMA OTHER, SPECIFY
  NF1 MUTATED                    0              1
  NF1 WILD-TYPE                 14             39
D24V9, multiclass
                                  clus
vv                                 NF1 MUTATED NF1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                 0             1
  INFILTRATING DUCTAL CARCINOMA             19           692
  INFILTRATING LOBULAR CARCINOMA             6           166
  MEDULLARY CARCINOMA                        1             4
  METAPLASTIC CARCINOMA                      0             6
  MIXED HISTOLOGY (PLEASE SPECIFY)           1            26
  MUCINOUS CARCINOMA                         0            14
  OTHER, SPECIFY                             1            39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V10, continuous
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NF1 MUTATED                                  0     2
  NF1 WILD-TYPE                                1    55
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  NF1 MUTATED                           2    21
  NF1 WILD-TYPE                       119   684
D24V11, multiclass
                                  clus
vv                                 NF1 MUTATED NF1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      2            55
  BLACK OR AFRICAN AMERICAN                  2           119
  WHITE                                     21           684
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V12, binary
               cls
clus              0   1
  NF1 MUTATED     0  21
  NF1 WILD-TYPE  34 751
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED      0   21
  NF1 WILD-TYPE   34  751
                        clus
vv                       NF1 MUTATED NF1 WILD-TYPE
  HISPANIC OR LATINO               0            34
  NOT HISPANIC OR LATINO          21           751
[1] 2 2
[1] FALSE

Clustering(25) Variable = TCP11 MUTATION ANALYSIS
D25V1, survival
                 sevent
clus2               0   1
  TCP11 MUTATED     5   0
  TCP11 WILD-TYPE 821 138
  TCP11 MUTATED TCP11 WILD-TYPE 
              5             959 
  TCP11 MUTATED TCP11 WILD-TYPE 
              0             138 
$`TCP11 MUTATED`
TCGA-A2-A0CP TCGA-A2-A0YK TCGA-B6-A0IA TCGA-B6-A0IJ TCGA-BH-A0HX 
       92.48        19.33       275.87       233.62        27.25 

$`TCP11 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CR 
       55.43       136.73        99.12        24.79       114.81       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YL 
       50.47        21.90        21.67        49.48        18.61        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27       113.62       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.03       102.31        98.27        82.68        70.42        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       23.31        64.83        55.86        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      134.14       125.16       108.36       101.00       103.86        97.68 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT 
       96.00        86.07        93.90        99.32        37.81        41.82 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      104.28       112.77        97.84       105.27       102.84       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
       50.96        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       85.64        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
       11.90       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
       18.77       127.33        84.59       165.76       129.07       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO 
      255.68        68.45       212.25       234.28       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.28        89.46       282.90       169.51        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.46        18.35        21.01       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.55        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        74.99        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 
       37.74        39.55        39.16        70.22        84.13        51.58 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       51.68        37.22        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        85.87        77.75        49.94        77.95        74.14 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       41.75        46.39        89.06        90.97        81.73        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP 
       67.10        38.01        29.98        13.91        78.28        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        79.00        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        81.83 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        63.32        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       63.39        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       26.50        23.90        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HY 
        2.50        13.61        36.85        12.89        51.32        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        36.82        36.79        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       10.52       110.60        20.88        18.64        23.51        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        48.53        12.56        12.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       13.51        12.59        12.59        12.92        12.46        12.49 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.95        15.45        16.87        16.70         0.03         9.76 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z 
       24.56        14.43        33.99        12.95        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02        11.15        48.23        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       40.24         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       115.69       106.06       101.62       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        58.52        31.99        58.62        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       65.62        41.92        47.01        64.21        86.96 

  TCP11 MUTATED TCP11 WILD-TYPE 
          19.33            0.03 
  TCP11 MUTATED TCP11 WILD-TYPE 
         275.87          282.90 
  TCP11 MUTATED TCP11 WILD-TYPE 
          92.48           30.61 
[1] "19.3 - 275.9 (92.5)" "0.0 - 282.9 (30.6)" 
[1] "hr="   "1e+07"
D25V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  TCP11 MUTATED         0        1        0        0         2         3
  TCP11 WILD-TYPE      88       70        6        4       324       224
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  TCP11 MUTATED           0          0          0          0        0       0
  TCP11 WILD-TYPE         2        137         24         57       15      12
D25V3, multiclass
            clus
vv           TCP11 MUTATED TCP11 WILD-TYPE
  STAGE I                0              88
  STAGE IA               1              70
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              2             324
  STAGE IIB              3             224
  STAGE III              0               2
  STAGE IIIA             0             137
  STAGE IIIB             0              24
  STAGE IIIC             0              57
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  TCP11 MUTATED     1   3   2   0
  TCP11 WILD-TYPE 256 561 118  35
D25V4, multiclass
    clus
vv   TCP11 MUTATED TCP11 WILD-TYPE
  T1             1             256
  T2             3             561
  T3             2             118
  T4             0              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  TCP11 MUTATED     5   1   0   0
  TCP11 WILD-TYPE 457 324 107  68
D25V5, multiclass
    clus
vv   TCP11 MUTATED TCP11 WILD-TYPE
  N0             5             457
  N1             1             324
  N2             0             107
  N3             0              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V6, binary
                 cls
clus                0   1
  TCP11 MUTATED     6   0
  TCP11 WILD-TYPE 836  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TCP11 MUTATED      6    0
  TCP11 WILD-TYPE  836   16
   clus
vv  TCP11 MUTATED TCP11 WILD-TYPE
  0             6             836
  1             0              16
[1] 2 2
[1] FALSE
D25V7, binary
                 cls
clus                0   1
  TCP11 MUTATED     6   0
  TCP11 WILD-TYPE 962   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TCP11 MUTATED      6    0
  TCP11 WILD-TYPE  962    9
        clus
vv       TCP11 MUTATED TCP11 WILD-TYPE
  FEMALE             6             962
  MALE               0               9
[1] 2 2
[1] FALSE
D25V8, binary
                 cls
clus                0   1
  TCP11 MUTATED     4   1
  TCP11 WILD-TYPE 383 501
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TCP11 MUTATED      4    1
  TCP11 WILD-TYPE  383  501
     clus
vv    TCP11 MUTATED TCP11 WILD-TYPE
  NO              4             383
  YES             1             501
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  TCP11 MUTATED                            0                             3
  TCP11 WILD-TYPE                          1                           708
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  TCP11 MUTATED                                2                   0
  TCP11 WILD-TYPE                            170                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  TCP11 MUTATED                       0                                0
  TCP11 WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  TCP11 MUTATED                    0              1
  TCP11 WILD-TYPE                 14             39
D25V9, multiclass
                                  clus
vv                                 TCP11 MUTATED TCP11 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA                3             708
  INFILTRATING LOBULAR CARCINOMA               2             170
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               1              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TCP11 MUTATED                                  0     0
  TCP11 WILD-TYPE                                1    57
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  TCP11 MUTATED                           1     4
  TCP11 WILD-TYPE                       120   701
D25V11, multiclass
                                  clus
vv                                 TCP11 MUTATED TCP11 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              57
  BLACK OR AFRICAN AMERICAN                    1             120
  WHITE                                        4             701
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V12, binary
                 cls
clus                0   1
  TCP11 MUTATED     0   4
  TCP11 WILD-TYPE  34 768
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TCP11 MUTATED      0    4
  TCP11 WILD-TYPE   34  768
                        clus
vv                       TCP11 MUTATED TCP11 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO             4             768
[1] 2 2
[1] FALSE

Clustering(26) Variable = SF3B1 MUTATION ANALYSIS
D26V1, survival
                 sevent
clus2               0   1
  SF3B1 MUTATED    15   1
  SF3B1 WILD-TYPE 811 137
  SF3B1 MUTATED SF3B1 WILD-TYPE 
             16             948 
  SF3B1 MUTATED SF3B1 WILD-TYPE 
              1             137 
$`SF3B1 MUTATED`
TCGA-AR-A1AM TCGA-A2-A0EV TCGA-A8-A075 TCGA-AC-A23H TCGA-AC-A2B8 TCGA-B6-A0I2 
       98.33        31.82        17.03         5.72        22.26       143.38 
TCGA-B6-A0WT TCGA-BH-A0DQ TCGA-BH-A0HP TCGA-BH-A0HY TCGA-BH-A201 TCGA-C8-A26V 
      188.68         3.22        13.61        50.79        28.14        20.25 
TCGA-E2-A10F TCGA-E2-A56Z TCGA-E9-A1R3 TCGA-EW-A1P5 
       28.87         8.28         2.56        23.11 

$`SF3B1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
        2.56        32.91        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       72.00        35.05        34.29        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       17.52        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
       26.01         1.02        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        43.00        40.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N 
        9.99         9.99        12.00        50.04        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2BK 
       17.03        38.04        19.23        22.95        73.91        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       26.04        74.14        33.04        19.33        14.66        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN 
        6.48        16.31        14.83        22.19        25.05        14.99 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y 
       15.48        23.24        24.79        16.80        14.96        17.42 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A 
        0.33         0.33         0.23         0.33         0.62         2.96 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        1.78         1.71         9.96         7.36         7.46         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.33         0.33         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV 
        7.00         7.59         7.17         6.90         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL 
        0.36         0.33         0.33         0.33         0.53         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       81.63        95.70        68.75        69.83        58.95        44.42 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       32.78        21.40        52.18        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       22.36        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        65.10        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
      113.62       108.72       106.78       108.03       102.31        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       97.08        82.62        11.51        24.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY 
       15.62        32.52        84.10        23.31        64.83        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        37.81        41.82        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       89.00        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        54.21        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      281.29        32.58        11.90       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.52       146.50       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28       263.28       162.05       102.77       140.28 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WV TCGA-B6-A0WW 
       89.46       282.90       169.51        97.48        79.46        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       21.01       113.79       206.86       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       68.94        58.55        43.59       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
      170.17        37.87         7.07        85.35        74.99        68.12 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       18.84       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 
       25.55        63.09        81.44        37.74        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       70.22        84.13        51.58        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       18.21        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        81.73        77.98        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       13.91        78.28        15.65         2.56        79.00        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       70.88        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        81.83        24.49        31.00        63.32        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        63.39        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK 
       41.00        52.96        26.50        23.90        20.38         5.85 
TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
        2.37        16.96         2.50        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       27.25         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       17.69        25.81        31.53        97.48        25.08       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.83        33.99        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A202 TCGA-BH-A203 
       45.63        72.07        53.98        55.50        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        36.82        36.79        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       10.52       110.60        20.88        18.64        23.51        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        48.53        12.56        12.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       13.51        12.59        12.59        12.92        12.46        12.49 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y 
       12.33        12.95        12.33        12.53        12.36        12.95 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       15.45        16.87        16.70         0.03         9.76        24.56 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       14.43        33.99        12.95        56.81        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        13.97        14.17        13.48        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       17.49        16.50        55.50        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       12.03        53.00        14.01        18.97        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       20.09        19.40        20.38        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        15.22        14.73        21.83 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       14.50        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       16.31        16.64        12.99        15.16        43.04        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       15.32        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       16.04        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V 
       13.48        17.06         1.61        10.09        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 
       12.26        33.37        18.51        21.67        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       27.52        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       47.15        44.68        40.96        38.24        38.60        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       75.98        43.33        34.26        32.02        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       18.51        63.62        69.96        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        25.05        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       20.58        11.05        19.56        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       76.57        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       37.25        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        52.73        34.55 
TCGA-E2-A3DX TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 
       43.56        30.61        34.92        38.76        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       36.82        34.16        36.20        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ 
       35.77        35.24        25.84        18.94         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       28.27        34.95         6.12         3.02        11.15        48.23 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
       45.01        32.09        40.24         1.12        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
       21.27        46.59        47.64        34.45        32.05        42.25 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       37.74        39.09        38.37        41.03        41.72        40.73 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       40.50        20.12         0.69        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       24.56        12.33        29.72         9.47        38.07        32.91 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       30.18        30.44        23.90        23.84        26.70         0.79 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       25.81        26.40        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX 
       18.90        13.25        16.57        28.77        25.94        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P6 
       29.85        40.41        41.13        39.78        29.82        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        17.52         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 
       18.12         2.60        62.47        11.84        11.57        32.75 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U 
       17.06        15.32        14.70        14.47        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  SF3B1 MUTATED SF3B1 WILD-TYPE 
           2.56            0.03 
  SF3B1 MUTATED SF3B1 WILD-TYPE 
         188.68          282.90 
  SF3B1 MUTATED SF3B1 WILD-TYPE 
         22.685          31.000 
[1] "2.6 - 188.7 (22.7)" "0.0 - 282.9 (31.0)"
[1] "hr=" "2.6"
D26V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  SF3B1 MUTATED         1        3        0        0         2         6
  SF3B1 WILD-TYPE      87       68        6        4       324       221
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  SF3B1 MUTATED           0          3          0          1        0       0
  SF3B1 WILD-TYPE         2        134         24         56       15      12
D26V3, multiclass
            clus
vv           SF3B1 MUTATED SF3B1 WILD-TYPE
  STAGE I                1              87
  STAGE IA               3              68
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              2             324
  STAGE IIB              6             221
  STAGE III              0               2
  STAGE IIIA             3             134
  STAGE IIIB             0              24
  STAGE IIIC             1              56
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  SF3B1 MUTATED     4   8   4   0
  SF3B1 WILD-TYPE 253 556 116  35
D26V4, multiclass
    clus
vv   SF3B1 MUTATED SF3B1 WILD-TYPE
  T1             4             253
  T2             8             556
  T3             4             116
  T4             0              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  SF3B1 MUTATED     6   6   2   1
  SF3B1 WILD-TYPE 456 319 105  67
D26V5, multiclass
    clus
vv   SF3B1 MUTATED SF3B1 WILD-TYPE
  N0             6             456
  N1             6             319
  N2             2             105
  N3             1              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V6, binary
                 cls
clus                0   1
  SF3B1 MUTATED    16   0
  SF3B1 WILD-TYPE 826  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SF3B1 MUTATED     16    0
  SF3B1 WILD-TYPE  826   16
   clus
vv  SF3B1 MUTATED SF3B1 WILD-TYPE
  0            16             826
  1             0              16
[1] 2 2
[1] FALSE
D26V7, binary
                 cls
clus                0   1
  SF3B1 MUTATED    16   0
  SF3B1 WILD-TYPE 952   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SF3B1 MUTATED     16    0
  SF3B1 WILD-TYPE  952    9
        clus
vv       SF3B1 MUTATED SF3B1 WILD-TYPE
  FEMALE            16             952
  MALE               0               9
[1] 2 2
[1] FALSE
D26V8, binary
                 cls
clus                0   1
  SF3B1 MUTATED     5  11
  SF3B1 WILD-TYPE 382 491
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SF3B1 MUTATED      5   11
  SF3B1 WILD-TYPE  382  491
     clus
vv    SF3B1 MUTATED SF3B1 WILD-TYPE
  NO              5             382
  YES            11             491
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  SF3B1 MUTATED                            0                            12
  SF3B1 WILD-TYPE                          1                           699
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  SF3B1 MUTATED                                4                   0
  SF3B1 WILD-TYPE                            168                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  SF3B1 MUTATED                       0                                0
  SF3B1 WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  SF3B1 MUTATED                    0              0
  SF3B1 WILD-TYPE                 14             40
D26V9, multiclass
                                  clus
vv                                 SF3B1 MUTATED SF3B1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA               12             699
  INFILTRATING LOBULAR CARCINOMA               4             168
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               0              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SF3B1 MUTATED                                  0     1
  SF3B1 WILD-TYPE                                1    56
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  SF3B1 MUTATED                           1    13
  SF3B1 WILD-TYPE                       120   692
D26V11, multiclass
                                  clus
vv                                 SF3B1 MUTATED SF3B1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        1              56
  BLACK OR AFRICAN AMERICAN                    1             120
  WHITE                                       13             692
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V12, binary
                 cls
clus                0   1
  SF3B1 MUTATED     0  13
  SF3B1 WILD-TYPE  34 759
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SF3B1 MUTATED      0   13
  SF3B1 WILD-TYPE   34  759
                        clus
vv                       SF3B1 MUTATED SF3B1 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO            13             759
[1] 2 2
[1] FALSE

Clustering(27) Variable = ERBB2 MUTATION ANALYSIS
D27V1, survival
                 sevent
clus2               0   1
  ERBB2 MUTATED    15   5
  ERBB2 WILD-TYPE 811 133
  ERBB2 MUTATED ERBB2 WILD-TYPE 
             20             944 
  ERBB2 MUTATED ERBB2 WILD-TYPE 
              5             133 
$`ERBB2 MUTATED`
TCGA-A2-A0T6 TCGA-A2-A3XV TCGA-A8-A06Z TCGA-A8-A08Z TCGA-A8-A0A6 TCGA-A8-A0AB 
       18.90        32.75         1.02        40.01        21.04        17.03 
TCGA-AC-A3YI TCGA-AN-A046 TCGA-AO-A128 TCGA-BH-A0C1 TCGA-BH-A0HF TCGA-BH-A18P 
       23.24         0.33       106.78        46.39        23.90        30.28 
TCGA-BH-A1FE TCGA-C8-A135 TCGA-C8-A274 TCGA-C8-A3M7 TCGA-D8-A1XM TCGA-E9-A1R5 
       74.73        12.92        16.70        33.99        17.69         3.02 
TCGA-EW-A1PD TCGA-OL-A5D6 
       13.94        36.30 

$`ERBB2 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       20.52        17.46        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       33.93        91.07        29.98        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
       26.01        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
      112.08        43.00        30.97        41.98        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00        50.04        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AD TCGA-AC-A23C 
       19.04        13.02         0.99        27.02        38.04        19.23 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72        22.26        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 
       16.31        14.83        22.19        25.05        14.99        15.48 
TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y 
       24.79        16.80        14.96        17.42         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.23         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 
       55.33        71.80       115.27       113.62       108.72       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
      102.31        98.27        82.68        70.42        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      112.77        97.84       105.27       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       71.05        93.83       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       63.62        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 
       10.59        77.62       143.38       281.29        32.58        11.90 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       74.14        41.75        89.06        90.97        81.73        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP 
       67.10        38.01        29.98        13.91        78.28        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        79.00        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        81.83 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        63.32        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       63.39        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO 
       26.50        20.38         5.85         2.37        16.96         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
       13.61        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       72.56        37.74        55.63        37.55        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       51.39        51.16        69.93        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       42.28        12.00        55.69        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FG 
       31.53        97.48        25.08       114.15        33.17       122.83 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
       33.99        63.35        55.00        45.63        72.07        53.98 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       55.50        28.14        26.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        36.82        36.79        20.12        10.52       110.60 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
       20.88        18.64        23.51        11.93        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
       12.66        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 
       12.66        48.53        12.56        12.16        13.51        12.59 
TCGA-C8-A134 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.59        12.46        12.49        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
       11.28         0.16        12.03        12.33        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       20.25        12.53        12.36        12.95        15.45        16.87 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M8 TCGA-D8-A13Y 
        0.03         9.76        24.56        14.43        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XQ 
       14.73        21.83        14.50        19.92        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        6.12        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW 
       23.84        26.70         0.79        25.81        26.40        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       28.77        25.94        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        29.82        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       18.90        19.99         6.15        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.52         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.84        11.57        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D7 TCGA-OL-A5D8 
       14.47        27.91        22.39         2.10        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE 
       64.21        86.96 

  ERBB2 MUTATED ERBB2 WILD-TYPE 
           0.33            0.03 
  ERBB2 MUTATED ERBB2 WILD-TYPE 
         106.78          282.90 
  ERBB2 MUTATED ERBB2 WILD-TYPE 
          22.14           31.00 
[1] "0.3 - 106.8 (22.1)" "0.0 - 282.9 (31.0)"
[1] "hr=" "3.3"
D27V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  ERBB2 MUTATED         1        3        0        0         7         4
  ERBB2 WILD-TYPE      87       68        6        4       319       223
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  ERBB2 MUTATED           0          1          1          2        0       0
  ERBB2 WILD-TYPE         2        136         23         55       15      12
D27V3, multiclass
            clus
vv           ERBB2 MUTATED ERBB2 WILD-TYPE
  STAGE I                1              87
  STAGE IA               3              68
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              7             319
  STAGE IIB              4             223
  STAGE III              0               2
  STAGE IIIA             1             136
  STAGE IIIB             1              23
  STAGE IIIC             2              55
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  ERBB2 MUTATED     6   9   3   2
  ERBB2 WILD-TYPE 251 555 117  33
D27V4, multiclass
    clus
vv   ERBB2 MUTATED ERBB2 WILD-TYPE
  T1             6             251
  T2             9             555
  T3             3             117
  T4             2              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  ERBB2 MUTATED    13   3   1   3
  ERBB2 WILD-TYPE 449 322 106  65
D27V5, multiclass
    clus
vv   ERBB2 MUTATED ERBB2 WILD-TYPE
  N0            13             449
  N1             3             322
  N2             1             106
  N3             3              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V6, binary
                 cls
clus                0   1
  ERBB2 MUTATED    18   0
  ERBB2 WILD-TYPE 824  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB2 MUTATED     18    0
  ERBB2 WILD-TYPE  824   16
   clus
vv  ERBB2 MUTATED ERBB2 WILD-TYPE
  0            18             824
  1             0              16
[1] 2 2
[1] FALSE
D27V7, binary
                 cls
clus                0   1
  ERBB2 MUTATED    19   1
  ERBB2 WILD-TYPE 949   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB2 MUTATED     19    1
  ERBB2 WILD-TYPE  949    8
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  FEMALE            19             949
  MALE               1               8
[1] 2 2
[1] FALSE
D27V8, binary
                 cls
clus                0   1
  ERBB2 MUTATED     6  10
  ERBB2 WILD-TYPE 381 492
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB2 MUTATED      6   10
  ERBB2 WILD-TYPE  381  492
     clus
vv    ERBB2 MUTATED ERBB2 WILD-TYPE
  NO              6             381
  YES            10             492
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  ERBB2 MUTATED                            0                            14
  ERBB2 WILD-TYPE                          1                           697
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  ERBB2 MUTATED                                6                   0
  ERBB2 WILD-TYPE                            166                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  ERBB2 MUTATED                       0                                0
  ERBB2 WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  ERBB2 MUTATED                    0              0
  ERBB2 WILD-TYPE                 14             40
D27V9, multiclass
                                  clus
vv                                 ERBB2 MUTATED ERBB2 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA               14             697
  INFILTRATING LOBULAR CARCINOMA               6             166
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               0              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ERBB2 MUTATED                                  0     3
  ERBB2 WILD-TYPE                                1    54
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  ERBB2 MUTATED                           2    11
  ERBB2 WILD-TYPE                       119   694
D27V11, multiclass
                                  clus
vv                                 ERBB2 MUTATED ERBB2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        3              54
  BLACK OR AFRICAN AMERICAN                    2             119
  WHITE                                       11             694
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V12, binary
                 cls
clus                0   1
  ERBB2 MUTATED     1  13
  ERBB2 WILD-TYPE  33 759
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB2 MUTATED      1   13
  ERBB2 WILD-TYPE   33  759
                        clus
vv                       ERBB2 MUTATED ERBB2 WILD-TYPE
  HISPANIC OR LATINO                 1              33
  NOT HISPANIC OR LATINO            13             759
[1] 2 2
[1] FALSE

Clustering(28) Variable = RAB42 MUTATION ANALYSIS
D28V1, survival
                 sevent
clus2               0   1
  RAB42 MUTATED     2   2
  RAB42 WILD-TYPE 824 136
  RAB42 MUTATED RAB42 WILD-TYPE 
              4             960 
  RAB42 MUTATED RAB42 WILD-TYPE 
              2             136 
$`RAB42 MUTATED`
TCGA-A2-A0CM TCGA-A8-A0A1 TCGA-B6-A0WX TCGA-BH-A0E6 
       24.79        12.00        21.01         9.63 

$`RAB42 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
       55.43       136.73        99.12       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       35.47        30.61        37.45        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J 
       31.73        20.19        25.15        29.56        23.74        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA 
       11.34        10.59        10.29        13.41        14.70        14.93 
TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       13.74        14.66        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       12.10        10.72        13.02        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        33.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 
       31.00         0.99       112.08        43.00        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       41.98        12.00         9.99         9.99        12.00        50.04 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       33.07         1.02        25.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
        0.99        14.01        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27       113.62       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.03       102.31        98.27        82.68        70.42        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       23.31        64.83        55.86        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      134.14       125.16       108.36       101.00       103.86        97.68 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT 
       96.00        86.07        93.90        99.32        37.81        41.82 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      104.28       112.77        97.84       105.27       102.84       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
       50.96        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       85.64        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       11.90       275.87       129.57        50.70        65.52       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      263.28       162.05       102.77       140.28        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WY 
      169.51        97.48       188.68        79.46        18.35       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E7 TCGA-BH-A0E9 
       16.27         4.41        15.68        14.30        44.81        81.83 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        63.32        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       63.39        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       26.50        23.90        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       17.69        25.81        31.53        97.48        25.08       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.83        33.99        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       110.60        20.88        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.49        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       70.36        33.73        33.70        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 
       22.19        60.99        11.08        54.18        60.36        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       24.59        75.81        28.90       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        52.73        34.55        43.56         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        38.76        34.82        32.88        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       36.20        36.56        39.55        41.62        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       25.84        18.94         9.86        24.82        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02        11.15        48.23        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       32.09        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       20.12         0.69        38.99         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       12.33        29.72         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       26.40        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        28.77        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        17.52         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 
       18.12         2.60        62.47        11.84        11.57        32.75 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U 
       17.06        15.32        14.70        14.47        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  RAB42 MUTATED RAB42 WILD-TYPE 
           9.63            0.03 
  RAB42 MUTATED RAB42 WILD-TYPE 
          24.79          282.90 
  RAB42 MUTATED RAB42 WILD-TYPE 
         16.505          31.000 
[1] "9.6 - 24.8 (16.5)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "19" 
D28V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  RAB42 MUTATED         0        1        0        0         2         0
  RAB42 WILD-TYPE      88       70        6        4       324       227
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  RAB42 MUTATED           0          1          0          0        0       0
  RAB42 WILD-TYPE         2        136         24         57       15      12
D28V3, multiclass
            clus
vv           RAB42 MUTATED RAB42 WILD-TYPE
  STAGE I                0              88
  STAGE IA               1              70
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              2             324
  STAGE IIB              0             227
  STAGE III              0               2
  STAGE IIIA             1             136
  STAGE IIIB             0              24
  STAGE IIIC             0              57
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  RAB42 MUTATED     1   2   1   0
  RAB42 WILD-TYPE 256 562 119  35
D28V4, multiclass
    clus
vv   RAB42 MUTATED RAB42 WILD-TYPE
  T1             1             256
  T2             2             562
  T3             1             119
  T4             0              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  RAB42 MUTATED     3   1   0   0
  RAB42 WILD-TYPE 459 324 107  68
D28V5, multiclass
    clus
vv   RAB42 MUTATED RAB42 WILD-TYPE
  N0             3             459
  N1             1             324
  N2             0             107
  N3             0              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V6, binary
                 cls
clus                0   1
  RAB42 MUTATED     4   0
  RAB42 WILD-TYPE 838  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RAB42 MUTATED      4    0
  RAB42 WILD-TYPE  838   16
   clus
vv  RAB42 MUTATED RAB42 WILD-TYPE
  0             4             838
  1             0              16
[1] 2 2
[1] FALSE
D28V7, binary
                 cls
clus                0   1
  RAB42 MUTATED     4   0
  RAB42 WILD-TYPE 964   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RAB42 MUTATED      4    0
  RAB42 WILD-TYPE  964    9
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  FEMALE             4             964
  MALE               0               9
[1] 2 2
[1] FALSE
D28V8, binary
                 cls
clus                0   1
  RAB42 MUTATED     2   1
  RAB42 WILD-TYPE 385 501
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RAB42 MUTATED      2    1
  RAB42 WILD-TYPE  385  501
     clus
vv    RAB42 MUTATED RAB42 WILD-TYPE
  NO              2             385
  YES             1             501
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  RAB42 MUTATED                            0                             2
  RAB42 WILD-TYPE                          1                           709
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  RAB42 MUTATED                                1                   0
  RAB42 WILD-TYPE                            171                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  RAB42 MUTATED                       0                                0
  RAB42 WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  RAB42 MUTATED                    0              1
  RAB42 WILD-TYPE                 14             39
D28V9, multiclass
                                  clus
vv                                 RAB42 MUTATED RAB42 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA                2             709
  INFILTRATING LOBULAR CARCINOMA               1             171
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               1              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  RAB42 MUTATED                                  0     0
  RAB42 WILD-TYPE                                1    57
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  RAB42 MUTATED                           2     1
  RAB42 WILD-TYPE                       119   704
D28V11, multiclass
                                  clus
vv                                 RAB42 MUTATED RAB42 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              57
  BLACK OR AFRICAN AMERICAN                    2             119
  WHITE                                        1             704
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V12, binary
                 cls
clus                0   1
  RAB42 MUTATED     0   2
  RAB42 WILD-TYPE  34 770
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RAB42 MUTATED      0    2
  RAB42 WILD-TYPE   34  770
                        clus
vv                       RAB42 MUTATED RAB42 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO             2             770
[1] 2 2
[1] FALSE

Clustering(29) Variable = CDC42EP1 MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                  0   1
  CDC42EP1 MUTATED     5   0
  CDC42EP1 WILD-TYPE 821 138
  CDC42EP1 MUTATED CDC42EP1 WILD-TYPE 
                 5                959 
  CDC42EP1 MUTATED CDC42EP1 WILD-TYPE 
                 0                138 
$`CDC42EP1 MUTATED`
TCGA-AC-A5XS TCGA-A8-A07R TCGA-AN-A0FY TCGA-AO-A128 TCGA-BH-A0BM 
       19.33         8.98         0.33       106.78        61.68 

$`CDC42EP1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       14.53        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       35.47        30.61        37.45        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J 
       31.73        20.19        25.15        29.56        23.74        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA 
       11.34        10.59        10.29        13.41        14.70        14.93 
TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       13.74        14.66        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       12.10        10.72        13.02        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        33.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
       32.05         9.99        10.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FZ 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.53         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A 
       71.80       115.27       113.62       108.72       108.03       102.31 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        82.68        70.42        60.56        53.88        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J 
       20.45        97.08        82.62        11.51        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX 
      130.09        15.62        32.52        84.10        23.31        64.83 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH 
       55.86        65.36       133.22        83.87       134.14       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO 
      108.36       101.00       103.86        97.68        96.00        86.07 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV 
       93.90        99.32        37.81        41.82        94.29        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L 
       86.53        86.43        33.73       160.90        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
      120.33        99.78       118.59         2.76       104.28       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       97.84       105.27       102.84       105.30        50.96        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       98.66        89.00        99.62        93.30        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM 
       93.83       166.42        20.25        86.53        54.21        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       38.17        39.39        40.54        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA 
       77.62       143.38       281.29        32.58        11.90       275.87 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      129.57        50.70        65.52       146.50       112.37       233.62 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
       18.77       127.33        84.59       165.76       129.07       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO 
      255.68        68.45       212.25       234.28       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.28        89.46       282.90       169.51        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.46        18.35        21.01       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.55        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        74.99        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 
       37.74        39.55        39.16        70.22        84.13        51.58 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       51.68        37.22        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       21.70        74.89        72.23        75.48        74.14        76.60 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 
       85.87        77.75        49.94        77.95        74.14        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       46.39        89.06        90.97        81.73        77.98        67.10 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ 
       38.01        29.98        13.91        78.28        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        79.00        67.86        70.88        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB 
       15.68        14.30         9.63        44.81        81.83        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        63.32        30.35        10.78        15.16        63.39 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       53.26        24.56        23.08        41.00        52.96        26.50 
TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO 
       23.90        20.38         5.85         2.37        16.96         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
       13.61        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        36.82        36.79        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       10.52       110.60        20.88        18.64        23.51        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        48.53        12.56        12.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       13.51        12.59        12.59        12.92        12.46        12.49 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.95        15.45        16.87        16.70         0.03         9.76 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z 
       24.56        14.43        33.99        12.95        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02        11.15        48.23        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       40.24         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       115.69       106.06       101.62       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        58.52        31.99        58.62        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       65.62        41.92        47.01        64.21        86.96 

  CDC42EP1 MUTATED CDC42EP1 WILD-TYPE 
              0.33               0.03 
  CDC42EP1 MUTATED CDC42EP1 WILD-TYPE 
            106.78             282.90 
  CDC42EP1 MUTATED CDC42EP1 WILD-TYPE 
             19.33              30.97 
[1] "0.3 - 106.8 (19.3)" "0.0 - 282.9 (31.0)"
[1] "hr="     "3300000"
D29V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  CDC42EP1 MUTATED         0        1        0        0         2         1
  CDC42EP1 WILD-TYPE      88       70        6        4       324       226
                    vv
clus                 STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  CDC42EP1 MUTATED           0          0          0          1        0
  CDC42EP1 WILD-TYPE         2        137         24         56       15
                    vv
clus                 STAGE X
  CDC42EP1 MUTATED         0
  CDC42EP1 WILD-TYPE      12
D29V3, multiclass
            clus
vv           CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  STAGE I                   0                 88
  STAGE IA                  1                 70
  STAGE IB                  0                  6
  STAGE II                  0                  4
  STAGE IIA                 2                324
  STAGE IIB                 1                226
  STAGE III                 0                  2
  STAGE IIIA                0                137
  STAGE IIIB                0                 24
  STAGE IIIC                1                 56
  STAGE IV                  0                 15
  STAGE X                   0                 12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                  T1  T2  T3  T4
  CDC42EP1 MUTATED     1   4   0   0
  CDC42EP1 WILD-TYPE 256 560 120  35
D29V4, multiclass
    clus
vv   CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  T1                1                256
  T2                4                560
  T3                0                120
  T4                0                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                  N0  N1  N2  N3
  CDC42EP1 MUTATED     3   1   0   1
  CDC42EP1 WILD-TYPE 459 324 107  67
D29V5, multiclass
    clus
vv   CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  N0                3                459
  N1                1                324
  N2                0                107
  N3                1                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V6, binary
                    cls
clus                   0   1
  CDC42EP1 MUTATED     4   0
  CDC42EP1 WILD-TYPE 838  16
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  CDC42EP1 MUTATED      4    0
  CDC42EP1 WILD-TYPE  838   16
   clus
vv  CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  0                4                838
  1                0                 16
[1] 2 2
[1] FALSE
D29V7, binary
                    cls
clus                   0   1
  CDC42EP1 MUTATED     5   0
  CDC42EP1 WILD-TYPE 963   9
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  CDC42EP1 MUTATED      5    0
  CDC42EP1 WILD-TYPE  963    9
        clus
vv       CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  FEMALE                5                963
  MALE                  0                  9
[1] 2 2
[1] FALSE
D29V8, binary
                    cls
clus                   0   1
  CDC42EP1 MUTATED     3   1
  CDC42EP1 WILD-TYPE 384 501
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  CDC42EP1 MUTATED      3    1
  CDC42EP1 WILD-TYPE  384  501
     clus
vv    CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  NO                 3                384
  YES                1                501
[1] 2 2
[1] FALSE
                    vv
clus                 INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  CDC42EP1 MUTATED                            0                             4
  CDC42EP1 WILD-TYPE                          1                           707
                    vv
clus                 INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  CDC42EP1 MUTATED                                1                   0
  CDC42EP1 WILD-TYPE                            171                   5
                    vv
clus                 METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  CDC42EP1 MUTATED                       0                                0
  CDC42EP1 WILD-TYPE                     6                               27
                    vv
clus                 MUCINOUS CARCINOMA OTHER, SPECIFY
  CDC42EP1 MUTATED                    0              0
  CDC42EP1 WILD-TYPE                 14             40
D29V9, multiclass
                                  clus
vv                                 CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                      0                  1
  INFILTRATING DUCTAL CARCINOMA                   4                707
  INFILTRATING LOBULAR CARCINOMA                  1                171
  MEDULLARY CARCINOMA                             0                  5
  METAPLASTIC CARCINOMA                           0                  6
  MIXED HISTOLOGY (PLEASE SPECIFY)                0                 27
  MUCINOUS CARCINOMA                              0                 14
  OTHER, SPECIFY                                  0                 40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V10, continuous
                    vv
clus                 AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CDC42EP1 MUTATED                                  0     0
  CDC42EP1 WILD-TYPE                                1    57
                    vv
clus                 BLACK OR AFRICAN AMERICAN WHITE
  CDC42EP1 MUTATED                           0     4
  CDC42EP1 WILD-TYPE                       121   701
D29V11, multiclass
                                  clus
vv                                 CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                0                  1
  ASIAN                                           0                 57
  BLACK OR AFRICAN AMERICAN                       0                121
  WHITE                                           4                701
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V12, binary
                    cls
clus                   0   1
  CDC42EP1 MUTATED     0   3
  CDC42EP1 WILD-TYPE  34 769
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  CDC42EP1 MUTATED      0    3
  CDC42EP1 WILD-TYPE   34  769
                        clus
vv                       CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  HISPANIC OR LATINO                    0                 34
  NOT HISPANIC OR LATINO                3                769
[1] 2 2
[1] FALSE

Clustering(30) Variable = KDM6A MUTATION ANALYSIS
D30V1, survival
                 sevent
clus2               0   1
  KDM6A MUTATED    12   2
  KDM6A WILD-TYPE 814 136
  KDM6A MUTATED KDM6A WILD-TYPE 
             14             950 
  KDM6A MUTATED KDM6A WILD-TYPE 
              2             136 
$`KDM6A MUTATED`
TCGA-A2-A0CK TCGA-A2-A0T4 TCGA-A8-A06Y TCGA-A8-A0A6 TCGA-AC-A23H TCGA-AO-A12A 
      136.73        20.52        26.01        21.04         5.72       102.31 
TCGA-AR-A24Q TCGA-BH-A0DL TCGA-BH-A0HA TCGA-BH-A18G TCGA-D8-A1JH TCGA-E2-A1LK 
      104.28        78.28        52.96         4.90        14.01         8.75 
TCGA-E9-A1RF TCGA-OL-A5D7 
        6.58        58.52 

$`KDM6A WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
       55.43        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T5 
       44.28        17.52        17.13         8.38        49.84        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        43.00        40.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N 
        9.99         9.99        12.00        50.04        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       12.00        19.04        13.02         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK 
       38.04        19.23        22.95        73.91        22.26        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB 
       26.04        74.14        33.04        19.33        14.66        32.45 
TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN 
        6.48        16.31        14.83        22.19        25.05        14.99 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y 
       15.48        23.24        24.79        16.80        14.96        17.42 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A 
        0.33         0.33         0.23         0.33         0.62         2.96 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        1.78         1.71         9.96         7.36         7.46         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.33         0.33         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV 
        7.00         7.59         7.17         6.90         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL 
        0.36         0.33         0.33         0.33         0.53         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       81.63        95.70        68.75        69.83        58.95        44.42 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       32.78        21.40        52.18        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       22.36        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        65.10        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12B TCGA-AO-A12D 
      113.62       108.72       106.78       108.03        98.27        82.68 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       70.42        60.56        53.88        40.57        20.45        97.08 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 
       82.62        11.51        24.79        26.93       130.09        15.62 
TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 
       32.52        84.10        23.31        64.83        55.86        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      133.22        83.87       134.14       125.16       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
      103.86        97.68        96.00        86.07        93.90        99.32 
TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       37.81        41.82        94.29        61.28        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       33.73       160.90        50.89        94.22       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
      118.59         2.76       112.77        97.84       105.27       102.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
      105.30        50.96        98.76        98.66        89.00        99.62 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       93.30        85.64        71.05        93.83       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       86.53        54.21        63.62        38.17        39.39        40.54 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       33.30        38.96        10.59        77.62       143.38       281.29 
TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
       32.58        11.90       275.87       129.57        50.70        65.52 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      146.50       112.37       233.62        18.77       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH 
      165.76       129.07       140.88       255.68        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
      234.28       263.28       162.05       102.77       140.28        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      282.90       169.51        97.48       188.68        79.46        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       21.01       113.79       206.86       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       68.94        58.55        43.59       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
      170.17        37.87         7.07        85.35        74.99        68.12 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       18.84       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 
       25.55        63.09        81.44        37.74        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       70.22        84.13        51.58        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       18.21        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        81.73        77.98        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       13.91        15.65         3.22         2.56        79.00        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       70.88        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        81.83        24.49        31.00        63.32        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        63.39        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       41.00        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       44.81        23.05        32.91        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       17.69        25.81        31.53        97.48        25.08       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.83        33.99        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       110.60        20.88        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.49        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.15        18.90        12.03        53.00        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LL TCGA-E2-A1LS 
       75.81        28.90       106.75       102.61        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
        1.12        46.65        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       19.99         6.15        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.52         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.84        11.57        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D8 
       14.47        27.91        22.39         2.10        36.30        31.99 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE 
       64.21        86.96 

  KDM6A MUTATED KDM6A WILD-TYPE 
           4.90            0.03 
  KDM6A MUTATED KDM6A WILD-TYPE 
         136.73          282.90 
  KDM6A MUTATED KDM6A WILD-TYPE 
         23.525          30.985 
[1] "4.9 - 136.7 (23.5)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.2"
D30V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  KDM6A MUTATED         1        2        0        0         6         2
  KDM6A WILD-TYPE      87       69        6        4       320       225
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  KDM6A MUTATED           0          2          0          2        0       0
  KDM6A WILD-TYPE         2        135         24         55       15      12
D30V3, multiclass
            clus
vv           KDM6A MUTATED KDM6A WILD-TYPE
  STAGE I                1              87
  STAGE IA               2              69
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              6             320
  STAGE IIB              2             225
  STAGE III              0               2
  STAGE IIIA             2             135
  STAGE IIIB             0              24
  STAGE IIIC             2              55
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  KDM6A MUTATED     3   8   3   1
  KDM6A WILD-TYPE 254 556 117  34
D30V4, multiclass
    clus
vv   KDM6A MUTATED KDM6A WILD-TYPE
  T1             3             254
  T2             8             556
  T3             3             117
  T4             1              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  KDM6A MUTATED    10   0   2   2
  KDM6A WILD-TYPE 452 325 105  66
D30V5, multiclass
    clus
vv   KDM6A MUTATED KDM6A WILD-TYPE
  N0            10             452
  N1             0             325
  N2             2             105
  N3             2              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V6, binary
                 cls
clus                0   1
  KDM6A MUTATED    14   0
  KDM6A WILD-TYPE 828  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KDM6A MUTATED     14    0
  KDM6A WILD-TYPE  828   16
   clus
vv  KDM6A MUTATED KDM6A WILD-TYPE
  0            14             828
  1             0              16
[1] 2 2
[1] FALSE
D30V7, binary
                 cls
clus                0   1
  KDM6A MUTATED    15   0
  KDM6A WILD-TYPE 953   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KDM6A MUTATED     15    0
  KDM6A WILD-TYPE  953    9
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  FEMALE            15             953
  MALE               0               9
[1] 2 2
[1] FALSE
D30V8, binary
                 cls
clus                0   1
  KDM6A MUTATED     5   9
  KDM6A WILD-TYPE 382 493
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KDM6A MUTATED      5    9
  KDM6A WILD-TYPE  382  493
     clus
vv    KDM6A MUTATED KDM6A WILD-TYPE
  NO              5             382
  YES             9             493
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  KDM6A MUTATED                            0                            10
  KDM6A WILD-TYPE                          1                           701
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  KDM6A MUTATED                                4                   0
  KDM6A WILD-TYPE                            168                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  KDM6A MUTATED                       0                                0
  KDM6A WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  KDM6A MUTATED                    0              1
  KDM6A WILD-TYPE                 14             39
D30V9, multiclass
                                  clus
vv                                 KDM6A MUTATED KDM6A WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA               10             701
  INFILTRATING LOBULAR CARCINOMA               4             168
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               1              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  KDM6A MUTATED                                  0     0
  KDM6A WILD-TYPE                                1    57
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  KDM6A MUTATED                           2    10
  KDM6A WILD-TYPE                       119   695
D30V11, multiclass
                                  clus
vv                                 KDM6A MUTATED KDM6A WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              57
  BLACK OR AFRICAN AMERICAN                    2             119
  WHITE                                       10             695
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V12, binary
                 cls
clus                0   1
  KDM6A MUTATED     0  11
  KDM6A WILD-TYPE  34 761
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KDM6A MUTATED      0   11
  KDM6A WILD-TYPE   34  761
                        clus
vv                       KDM6A MUTATED KDM6A WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO            11             761
[1] 2 2
[1] FALSE

Clustering(31) Variable = AQP12A MUTATION ANALYSIS
D31V1, survival
                  sevent
clus2                0   1
  AQP12A MUTATED     6   0
  AQP12A WILD-TYPE 820 138
  AQP12A MUTATED AQP12A WILD-TYPE 
               6              958 
  AQP12A MUTATED AQP12A WILD-TYPE 
               0              138 
$`AQP12A MUTATED`
TCGA-A7-A26F TCGA-A7-A56D TCGA-A8-A08G TCGA-AO-A12E TCGA-AQ-A1H2 TCGA-AR-A1AP 
       24.26        14.73        19.96        70.42        15.62        93.90 

$`AQP12A WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       38.30        23.61        31.36        23.80        21.73        22.32 
TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       11.28        11.97        11.05        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       35.47        30.61        37.45        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J 
       31.73        20.19        25.15        29.56        23.74        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA 
       11.34        10.59        10.29        13.41        14.70        14.93 
TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A5ZV 
       13.74        14.66        14.50        21.17        17.92        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        43.00        40.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N 
        9.99         9.99        12.00        50.04        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       17.03        38.04        19.23        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH 
       25.05        14.99        15.48        23.24        24.79        16.80 
TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 
       14.96        17.42         0.33         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.53         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27       113.62       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
      102.31        98.27        82.68        60.56        53.88        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J 
       20.45        97.08        82.62        11.51        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY 
      130.09        32.52        84.10        23.31        64.83        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AQ 
      101.00       103.86        97.68        96.00        86.07        99.32 
TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       37.81        41.82        94.29        61.28        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       33.73       160.90        50.89        94.22       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
      118.59         2.76       104.28       112.77        97.84       105.27 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
      102.84       105.30        50.96        98.76        98.66        89.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       99.62        93.30        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       40.54        33.30        38.96        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      281.29        32.58        11.90       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.52       146.50       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28       263.28       162.05       102.77       140.28 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       282.90       169.51        97.48       188.68        79.46 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.01       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.55        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       68.12        18.84       103.63        71.15        62.93        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 
       20.45        25.55        63.09        81.44        37.74        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.16        70.22        84.13        51.58        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        72.23        75.48        74.14        76.60        85.87 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       77.75        49.94        77.95        74.14        41.75        46.39 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        81.73        77.98        67.10        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       29.98        13.91        78.28        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       79.00        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30         9.63        44.81        81.83        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       63.32        30.35        10.78        15.16        63.39        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF 
       24.56        23.08        41.00        52.96        26.50        23.90 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP 
       20.38         5.85         2.37        16.96         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       36.85        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        4.90        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       37.74        30.28        55.63        37.55        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       51.39        51.16        69.93        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       42.28        12.00        55.69        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       31.53        97.48        25.08       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN 
      122.83        33.99        63.35        55.00        45.63        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
       53.98        55.50        28.14        26.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       57.83       130.16        36.82        36.79        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M 
      110.60        20.88        18.64        23.51        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        48.53        12.56        12.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       12.59        12.59        12.92        12.46        12.49        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM 
       10.92        11.34        11.28         0.16        12.03        12.33 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y 
       12.95        12.33        20.25        12.53        12.36        12.95 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       15.45        16.87        16.70         0.03         9.76        24.56 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       14.43        33.99        12.95        56.81        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        13.97        14.17        13.48        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       17.49        16.50        55.50        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       12.03        53.00        14.01        18.97        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       20.09        19.40        20.38        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        15.22        14.73        21.83 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       14.50        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       16.31        16.64        12.99        15.16        43.04        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       15.32        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       16.04        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V 
       13.48        17.06         1.61        10.09        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 
       12.26        33.37        18.51        21.67        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       27.52        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.87        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        75.98        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       69.34        18.51        63.62        69.96        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       20.71        21.63        18.21        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        11.05        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       28.50        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW 
       23.84        26.70         0.79        25.81        26.40        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       28.77        25.94        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        29.82        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG 
       18.90        19.99         6.15        13.94        10.52        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA 
       17.49        17.52         7.40       109.87        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
       79.10        83.34        70.85        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      115.69       106.06       101.62       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       69.30        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM 
       62.47        11.84        11.57        32.75        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.70        14.47        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       58.52        31.99        58.62        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       41.92        47.01        64.21        86.96 

  AQP12A MUTATED AQP12A WILD-TYPE 
           14.73             0.03 
  AQP12A MUTATED AQP12A WILD-TYPE 
            93.9            282.9 
  AQP12A MUTATED AQP12A WILD-TYPE 
          22.110           30.985 
[1] "14.7 - 93.9 (22.1)" "0.0 - 282.9 (31.0)"
[1] "hr="     "3300000"
D31V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  AQP12A MUTATED         1        1        0        0         2         1
  AQP12A WILD-TYPE      87       70        6        4       324       226
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  AQP12A MUTATED           0          1          0          0        0       0
  AQP12A WILD-TYPE         2        136         24         57       15      12
D31V3, multiclass
            clus
vv           AQP12A MUTATED AQP12A WILD-TYPE
  STAGE I                 1               87
  STAGE IA                1               70
  STAGE IB                0                6
  STAGE II                0                4
  STAGE IIA               2              324
  STAGE IIB               1              226
  STAGE III               0                2
  STAGE IIIA              1              136
  STAGE IIIB              0               24
  STAGE IIIC              0               57
  STAGE IV                0               15
  STAGE X                 0               12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  AQP12A MUTATED     2   3   1   0
  AQP12A WILD-TYPE 255 561 119  35
D31V4, multiclass
    clus
vv   AQP12A MUTATED AQP12A WILD-TYPE
  T1              2              255
  T2              3              561
  T3              1              119
  T4              0               35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  AQP12A MUTATED     5   0   1   0
  AQP12A WILD-TYPE 457 325 106  68
D31V5, multiclass
    clus
vv   AQP12A MUTATED AQP12A WILD-TYPE
  N0              5              457
  N1              0              325
  N2              1              106
  N3              0               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V6, binary
                  cls
clus                 0   1
  AQP12A MUTATED     5   0
  AQP12A WILD-TYPE 837  16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  AQP12A MUTATED      5    0
  AQP12A WILD-TYPE  837   16
   clus
vv  AQP12A MUTATED AQP12A WILD-TYPE
  0              5              837
  1              0               16
[1] 2 2
[1] FALSE
D31V7, binary
                  cls
clus                 0   1
  AQP12A MUTATED     6   0
  AQP12A WILD-TYPE 962   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  AQP12A MUTATED      6    0
  AQP12A WILD-TYPE  962    9
        clus
vv       AQP12A MUTATED AQP12A WILD-TYPE
  FEMALE              6              962
  MALE                0                9
[1] 2 2
[1] FALSE
D31V8, binary
                  cls
clus                 0   1
  AQP12A MUTATED     2   4
  AQP12A WILD-TYPE 385 498
[1] "tbl2"
                  cls
clus               [,1] [,2]
  AQP12A MUTATED      2    4
  AQP12A WILD-TYPE  385  498
     clus
vv    AQP12A MUTATED AQP12A WILD-TYPE
  NO               2              385
  YES              4              498
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  AQP12A MUTATED                            0                             4
  AQP12A WILD-TYPE                          1                           707
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  AQP12A MUTATED                                1                   0
  AQP12A WILD-TYPE                            171                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  AQP12A MUTATED                       0                                0
  AQP12A WILD-TYPE                     6                               27
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  AQP12A MUTATED                    0              1
  AQP12A WILD-TYPE                 14             39
D31V9, multiclass
                                  clus
vv                                 AQP12A MUTATED AQP12A WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA                 4              707
  INFILTRATING LOBULAR CARCINOMA                1              171
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)              0               27
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                                1               39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  AQP12A MUTATED                                  0     0
  AQP12A WILD-TYPE                                1    57
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  AQP12A MUTATED                           1     4
  AQP12A WILD-TYPE                       120   701
D31V11, multiclass
                                  clus
vv                                 AQP12A MUTATED AQP12A WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               57
  BLACK OR AFRICAN AMERICAN                     1              120
  WHITE                                         4              701
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V12, binary
                  cls
clus                 0   1
  AQP12A MUTATED     0   5
  AQP12A WILD-TYPE  34 767
[1] "tbl2"
                  cls
clus               [,1] [,2]
  AQP12A MUTATED      0    5
  AQP12A WILD-TYPE   34  767
                        clus
vv                       AQP12A MUTATED AQP12A WILD-TYPE
  HISPANIC OR LATINO                  0               34
  NOT HISPANIC OR LATINO              5              767
[1] 2 2
[1] FALSE

Clustering(32) Variable = KRAS MUTATION ANALYSIS
D32V1, survival
                sevent
clus2              0   1
  KRAS MUTATED     5   1
  KRAS WILD-TYPE 821 137
  KRAS MUTATED KRAS WILD-TYPE 
             6            958 
  KRAS MUTATED KRAS WILD-TYPE 
             1            137 
$`KRAS MUTATED`
TCGA-AN-A046 TCGA-AR-A1AL TCGA-AR-A1AS TCGA-C8-A131 TCGA-E2-A1IF TCGA-E9-A1NG 
        0.33        97.68        37.81        13.51        37.41        25.84 

$`KRAS WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U 
       12.00        32.05         9.99        10.98         8.98        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        18.05        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       38.01        28.96        19.96        12.00        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       31.00        31.00         0.99       112.08        43.00        40.01 
TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       30.97        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       50.04        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       21.04         0.99        27.02        17.03        38.04        19.23 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72        22.26        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 
       16.31        14.83        22.19        25.05        14.99        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X 
       23.24        24.79        16.80        14.96        17.42         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.33         0.23         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        9.96         7.36         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.53         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        5.59        80.28        61.35        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       68.75        69.83        58.95        44.42        32.78        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       52.18        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        65.10 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       62.04        55.33        71.80       115.27       113.62       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03       102.31        98.27        82.68        70.42 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       60.56        53.88        40.57        20.45        97.08        82.62 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       11.51        24.79        26.93       130.09        15.62        32.52 
TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 
       84.10        23.31        64.83        55.86        65.36       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       134.14       125.16       108.36       101.00       103.86 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AT TCGA-AR-A1AU 
       96.00        86.07        93.90        99.32        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      112.77        97.84       105.27       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       71.05        93.83       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       63.62        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 
       10.59        77.62       143.38       281.29        32.58        11.90 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       52.96        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07        53.98        55.50        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       26.14        38.60        83.31        57.83       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.79        20.12        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.56        12.16        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.49        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IG 
       33.01        32.35        28.50        37.25        77.65        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NH 
       36.56        39.55        41.62        35.77        35.24        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW 
       23.84        26.70         0.79        25.81        26.40        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       28.77        25.94        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        29.82        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG 
       18.90        19.99         6.15        13.94        10.52        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA 
       17.49        17.52         7.40       109.87        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
       79.10        83.34        70.85        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      115.69       106.06       101.62       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       69.30        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM 
       62.47        11.84        11.57        32.75        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.70        14.47        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       58.52        31.99        58.62        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       41.92        47.01        64.21        86.96 

  KRAS MUTATED KRAS WILD-TYPE 
          0.33           0.03 
  KRAS MUTATED KRAS WILD-TYPE 
         97.68         282.90 
  KRAS MUTATED KRAS WILD-TYPE 
        31.625         30.790 
[1] "0.3 - 97.7 (31.6)"  "0.0 - 282.9 (30.8)"
[1] "hr=" "1.4"
D32V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  KRAS MUTATED         1        0        0        0         2         1
  KRAS WILD-TYPE      87       71        6        4       324       226
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  KRAS MUTATED           0          2          0          0        0       0
  KRAS WILD-TYPE         2        135         24         57       15      12
D32V3, multiclass
            clus
vv           KRAS MUTATED KRAS WILD-TYPE
  STAGE I               1             87
  STAGE IA              0             71
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             2            324
  STAGE IIB             1            226
  STAGE III             0              2
  STAGE IIIA            2            135
  STAGE IIIB            0             24
  STAGE IIIC            0             57
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  KRAS MUTATED     1   4   1   0
  KRAS WILD-TYPE 256 560 119  35
D32V4, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            1            256
  T2            4            560
  T3            1            119
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  KRAS MUTATED     3   2   1   0
  KRAS WILD-TYPE 459 323 106  68
D32V5, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  N0            3            459
  N1            2            323
  N2            1            106
  N3            0             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V6, binary
                cls
clus               0   1
  KRAS MUTATED     6   0
  KRAS WILD-TYPE 836  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      6    0
  KRAS WILD-TYPE  836   16
   clus
vv  KRAS MUTATED KRAS WILD-TYPE
  0            6            836
  1            0             16
[1] 2 2
[1] FALSE
D32V7, binary
                cls
clus               0   1
  KRAS MUTATED     6   0
  KRAS WILD-TYPE 962   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      6    0
  KRAS WILD-TYPE  962    9
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE            6            962
  MALE              0              9
[1] 2 2
[1] FALSE
D32V8, binary
                cls
clus               0   1
  KRAS MUTATED     4   2
  KRAS WILD-TYPE 383 500
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      4    2
  KRAS WILD-TYPE  383  500
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  NO             4            383
  YES            2            500
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  KRAS MUTATED                            0                             5
  KRAS WILD-TYPE                          1                           706
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  KRAS MUTATED                                1                   0
  KRAS WILD-TYPE                            171                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  KRAS MUTATED                       0                                0
  KRAS WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  KRAS MUTATED                    0              0
  KRAS WILD-TYPE                 14             40
D32V9, multiclass
                                  clus
vv                                 KRAS MUTATED KRAS WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA               5            706
  INFILTRATING LOBULAR CARCINOMA              1            171
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              0             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  KRAS MUTATED                                  0     2
  KRAS WILD-TYPE                                1    55
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  KRAS MUTATED                           0     4
  KRAS WILD-TYPE                       121   701
D32V11, multiclass
                                  clus
vv                                 KRAS MUTATED KRAS WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       2             55
  BLACK OR AFRICAN AMERICAN                   0            121
  WHITE                                       4            701
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V12, binary
                cls
clus               0   1
  KRAS MUTATED     0   5
  KRAS WILD-TYPE  34 767
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      0    5
  KRAS WILD-TYPE   34  767
                        clus
vv                       KRAS MUTATED KRAS WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO            5            767
[1] 2 2
[1] FALSE

Clustering(33) Variable = NBPF9 MUTATION ANALYSIS
D33V1, survival
                 sevent
clus2               0   1
  NBPF9 MUTATED     4   1
  NBPF9 WILD-TYPE 822 137
  NBPF9 MUTATED NBPF9 WILD-TYPE 
              5             959 
  NBPF9 MUTATED NBPF9 WILD-TYPE 
              1             137 
$`NBPF9 MUTATED`
TCGA-A8-A06P TCGA-A8-A07F TCGA-A8-A07W TCGA-A8-A08T TCGA-AN-A0AL 
       13.02        18.97         9.99       112.08         7.46 

$`NBPF9 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R 
       14.73        12.10        10.72        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       43.00        33.99        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07Z TCGA-A8-A082 
        9.99        10.98         8.98        24.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       43.00        40.01        30.97        41.98        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00        50.04        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       19.04        13.02        21.04         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       38.04        19.23        22.95        73.91         5.72        22.26 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
       73.05        99.35        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       87.12        26.04        74.14        33.04        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM 
       32.45         6.48        16.31        14.83        22.19        25.05 
TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU 
       14.99        15.48        23.24        24.79        16.80        14.96 
TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
       17.42         0.33         0.33         0.23         0.33         0.62 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AM 
        2.96         1.78         1.71         9.96         7.36         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.33         0.33         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV 
        7.00         7.59         7.17         6.90         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL 
        0.36         0.33         0.33         0.33         0.53         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       81.63        95.70        68.75        69.83        58.95        44.42 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       32.78        21.40        52.18        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       22.36        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        65.10        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
      113.62       108.72       106.78       108.03       102.31        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       97.08        82.62        11.51        24.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY 
       15.62        32.52        84.10        23.31        64.83        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        37.81        41.82        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       89.00        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        54.21        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
      143.38       281.29        32.58        11.90       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
       50.70        65.52       146.50       112.37       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      127.33        84.59       165.76       129.07       140.88       255.68 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
       68.45       212.25       234.28       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.28        89.46       282.90       169.51        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 
       79.46        18.35        21.01       113.79       206.86       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF 
      245.10        28.27        68.94        58.55        43.59       101.52 
TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
       73.51       139.17       170.17        37.87         7.07        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
       74.99        68.12        18.84       103.63        71.15        62.93 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 
       59.84        20.45        25.55        63.09        81.44        37.74 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 
       39.55        39.16        70.22        84.13        51.58        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ 
       37.22        32.02        18.21        43.53        61.51        21.70 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       74.89        61.68        72.23        75.48        74.14        76.60 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 
       85.87        77.75        49.94        77.95        74.14        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       46.39        89.06        90.97        81.73        77.98        67.10 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ 
       38.01        29.98        13.91        78.28        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        79.00        67.86        70.88        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB 
       15.68        14.30         9.63        44.81        81.83        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        63.32        30.35        10.78        15.16        63.39 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       53.26        24.56        23.08        41.00        52.96        26.50 
TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO 
       23.90        20.38         5.85         2.37        16.96         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
       13.61        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        36.82        36.79        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       10.52       110.60        20.88        18.64        23.51        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        48.53        12.56        12.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       13.51        12.59        12.59        12.92        12.46        12.49 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.95        15.45        16.87        16.70         0.03         9.76 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z 
       24.56        14.43        33.99        12.95        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02        11.15        48.23        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       40.24         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       115.69       106.06       101.62       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        58.52        31.99        58.62        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       65.62        41.92        47.01        64.21        86.96 

  NBPF9 MUTATED NBPF9 WILD-TYPE 
           7.46            0.03 
  NBPF9 MUTATED NBPF9 WILD-TYPE 
         112.08          282.90 
  NBPF9 MUTATED NBPF9 WILD-TYPE 
          13.02           31.00 
[1] "7.5 - 112.1 (13.0)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.9"
D33V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  NBPF9 MUTATED         0        0        0        0         0         1
  NBPF9 WILD-TYPE      88       71        6        4       326       226
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  NBPF9 MUTATED           0          1          1          0        2       0
  NBPF9 WILD-TYPE         2        136         23         57       13      12
D33V3, multiclass
            clus
vv           NBPF9 MUTATED NBPF9 WILD-TYPE
  STAGE I                0              88
  STAGE IA               0              71
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              0             326
  STAGE IIB              1             226
  STAGE III              0               2
  STAGE IIIA             1             136
  STAGE IIIB             1              23
  STAGE IIIC             0              57
  STAGE IV               2              13
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  NBPF9 MUTATED     1   3   0   1
  NBPF9 WILD-TYPE 256 561 120  34
D33V4, multiclass
    clus
vv   NBPF9 MUTATED NBPF9 WILD-TYPE
  T1             1             256
  T2             3             561
  T3             0             120
  T4             1              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  NBPF9 MUTATED     1   2   1   0
  NBPF9 WILD-TYPE 461 323 106  68
D33V5, multiclass
    clus
vv   NBPF9 MUTATED NBPF9 WILD-TYPE
  N0             1             461
  N1             2             323
  N2             1             106
  N3             0              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V6, binary
                 cls
clus                0   1
  NBPF9 MUTATED     3   2
  NBPF9 WILD-TYPE 839  14
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NBPF9 MUTATED      3    2
  NBPF9 WILD-TYPE  839   14
   clus
vv  NBPF9 MUTATED NBPF9 WILD-TYPE
  0             3             839
  1             2              14
[1] 2 2
[1] FALSE
D33V7, binary
                 cls
clus                0   1
  NBPF9 MUTATED     5   0
  NBPF9 WILD-TYPE 963   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NBPF9 MUTATED      5    0
  NBPF9 WILD-TYPE  963    9
        clus
vv       NBPF9 MUTATED NBPF9 WILD-TYPE
  FEMALE             5             963
  MALE               0               9
[1] 2 2
[1] FALSE
D33V8, binary
                 cls
clus                0   1
  NBPF9 MUTATED     3   2
  NBPF9 WILD-TYPE 384 500
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NBPF9 MUTATED      3    2
  NBPF9 WILD-TYPE  384  500
     clus
vv    NBPF9 MUTATED NBPF9 WILD-TYPE
  NO              3             384
  YES             2             500
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  NBPF9 MUTATED                            0                             5
  NBPF9 WILD-TYPE                          1                           706
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  NBPF9 MUTATED                                0                   0
  NBPF9 WILD-TYPE                            172                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  NBPF9 MUTATED                       0                                0
  NBPF9 WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  NBPF9 MUTATED                    0              0
  NBPF9 WILD-TYPE                 14             40
D33V9, multiclass
                                  clus
vv                                 NBPF9 MUTATED NBPF9 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA                5             706
  INFILTRATING LOBULAR CARCINOMA               0             172
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               0              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V10, continuous
[1] "Remove cluster labels:" "NBPF9 MUTATED"         
clus
  NBPF9 MUTATED NBPF9 WILD-TYPE 
              1             825 
     TCGA-A1-A0SP      TCGA-A2-A04V      TCGA-A2-A04Y      TCGA-A2-A0CQ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A1G4      TCGA-A2-A25A      TCGA-A7-A0CD      TCGA-A7-A13G 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A26E      TCGA-A7-A26F      TCGA-A7-A26H      TCGA-A7-A26I 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A2KD      TCGA-A7-A3J1      TCGA-A7-A426      TCGA-A7-A5ZX 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A3W5      TCGA-AC-A3W6      TCGA-AC-A5EI      TCGA-AC-A5XS 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A62X      TCGA-AO-A0JI      TCGA-AO-A1KT      TCGA-AQ-A0Y5 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AQ-A54N      TCGA-AQ-A54O      TCGA-AR-A1AM      TCGA-AR-A1AR 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A2LL      TCGA-AR-A2LR      TCGA-AR-A5QM      TCGA-BH-A0B6 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0DO      TCGA-BH-A0EA      TCGA-BH-A18H      TCGA-BH-A1F5 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A146      TCGA-E2-A158      TCGA-E2-A1BC      TCGA-E2-A1L8 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1LG      TCGA-E2-A2P5      TCGA-EW-A1J5      TCGA-EW-A1P3 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-GM-A2DD      TCGA-GM-A2DO      TCGA-LL-A440      TCGA-LL-A50Y 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-LL-A5YP      TCGA-OL-A5RU      TCGA-A1-A0SB      TCGA-A1-A0SD 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A1-A0SE      TCGA-A1-A0SF      TCGA-A1-A0SG      TCGA-A1-A0SH 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A1-A0SI      TCGA-A1-A0SJ      TCGA-A1-A0SK      TCGA-A1-A0SM 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A1-A0SN      TCGA-A1-A0SQ      TCGA-A2-A04N      TCGA-A2-A04P 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A04Q      TCGA-A2-A04R      TCGA-A2-A04T      TCGA-A2-A04U 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A04W      TCGA-A2-A04X      TCGA-A2-A0CK      TCGA-A2-A0CL 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0CM      TCGA-A2-A0CO      TCGA-A2-A0CP      TCGA-A2-A0CR 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0CS      TCGA-A2-A0CT      TCGA-A2-A0CU      TCGA-A2-A0CV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0CW      TCGA-A2-A0CX      TCGA-A2-A0CZ      TCGA-A2-A0D0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0D1      TCGA-A2-A0D2      TCGA-A2-A0D3      TCGA-A2-A0D4 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0EM      TCGA-A2-A0EN      TCGA-A2-A0EO      TCGA-A2-A0EP 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0EQ      TCGA-A2-A0ER      TCGA-A2-A0ES      TCGA-A2-A0ET 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0EU      TCGA-A2-A0EV      TCGA-A2-A0EW      TCGA-A2-A0EX 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0EY      TCGA-A2-A0ST      TCGA-A2-A0SU      TCGA-A2-A0SV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0SW      TCGA-A2-A0SX      TCGA-A2-A0SY      TCGA-A2-A0T0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0T1      TCGA-A2-A0T2      TCGA-A2-A0T3      TCGA-A2-A0T4 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0T5      TCGA-A2-A0T6      TCGA-A2-A0T7      TCGA-A2-A0YC 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0YD      TCGA-A2-A0YE      TCGA-A2-A0YF      TCGA-A2-A0YG 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0YH      TCGA-A2-A0YI      TCGA-A2-A0YJ      TCGA-A2-A0YK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0YL      TCGA-A2-A0YM      TCGA-A2-A0YT      TCGA-A2-A1FV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A1FW      TCGA-A2-A1FX      TCGA-A2-A1FZ      TCGA-A2-A1G0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A1G1      TCGA-A2-A1G6      TCGA-A2-A259      TCGA-A2-A25B 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A25C      TCGA-A2-A25D      TCGA-A2-A25E      TCGA-A2-A25F 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A3KC      TCGA-A2-A3KD      TCGA-A2-A3XS      TCGA-A2-A3XT 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A3XU      TCGA-A2-A3XV      TCGA-A2-A3XW      TCGA-A2-A3XX 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A3XY      TCGA-A2-A3XZ      TCGA-A2-A3Y0      TCGA-A2-A4RW 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A4RX      TCGA-A2-A4RY      TCGA-A2-A4S0      TCGA-A2-A4S1 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A4S2      TCGA-A2-A4S3      TCGA-A7-A0CE      TCGA-A7-A0CG 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A0CH      TCGA-A7-A0CJ      TCGA-A7-A0D9      TCGA-A7-A0DA 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A0DB      TCGA-A7-A0DC      TCGA-A7-A13D      TCGA-A7-A13E 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A13F      TCGA-A7-A13H      TCGA-A7-A26G      TCGA-A7-A26J 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A3IY      TCGA-A7-A3J0      TCGA-A7-A3RF      TCGA-A7-A425 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A4SA      TCGA-A7-A4SB      TCGA-A7-A4SC      TCGA-A7-A4SD 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A4SE      TCGA-A7-A4SF      TCGA-A7-A56D      TCGA-A7-A5ZV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A5ZW      TCGA-AC-A23C      TCGA-AC-A23E      TCGA-AC-A23G 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A2B8      TCGA-AC-A2BK      TCGA-AC-A2BM      TCGA-AC-A2FB 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A2FE      TCGA-AC-A2FF      TCGA-AC-A2FG      TCGA-AC-A2FK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A2FM      TCGA-AC-A2FO      TCGA-AC-A2QH      TCGA-AC-A2QI 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A2QJ      TCGA-AC-A3BB      TCGA-AC-A3EH      TCGA-AC-A3HN 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A3OD      TCGA-AC-A3QP      TCGA-AC-A3TM      TCGA-AC-A3TN 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A3W7      TCGA-AC-A3YI      TCGA-AC-A3YJ      TCGA-AC-A5EH 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A5XU      TCGA-AC-A62Y      TCGA-AN-A03X      TCGA-AN-A03Y 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A041      TCGA-AN-A046      TCGA-AN-A049      TCGA-AN-A04A 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A04C      TCGA-AN-A04D      TCGA-AN-A0AJ      TCGA-AN-A0AK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A0AM      TCGA-AN-A0AR      TCGA-AN-A0AS      TCGA-AN-A0AT 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A0FD      TCGA-AN-A0FF      TCGA-AN-A0FJ      TCGA-AN-A0FK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A0FL      TCGA-AN-A0FN      TCGA-AN-A0FS      TCGA-AN-A0FT 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A0FV      TCGA-AN-A0FW      TCGA-AN-A0FX      TCGA-AN-A0FY 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A0FZ      TCGA-AN-A0G0      TCGA-AN-A0XL      TCGA-AN-A0XN 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A0XO      TCGA-AN-A0XP      TCGA-AN-A0XR      TCGA-AN-A0XS 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A0XT      TCGA-AN-A0XU      TCGA-AN-A0XV      TCGA-AN-A0XW 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A03L      TCGA-AO-A03M      TCGA-AO-A03N      TCGA-AO-A03O 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A03P      TCGA-AO-A03R      TCGA-AO-A03T      TCGA-AO-A03U 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A03V      TCGA-AO-A0J2      TCGA-AO-A0J3      TCGA-AO-A0J4 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A0J5      TCGA-AO-A0J6      TCGA-AO-A0J7      TCGA-AO-A0J8 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A0J9      TCGA-AO-A0JA      TCGA-AO-A0JB      TCGA-AO-A0JC 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A0JD      TCGA-AO-A0JE      TCGA-AO-A0JF      TCGA-AO-A0JJ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A0JL      TCGA-AO-A0JM      TCGA-AO-A124      TCGA-AO-A125 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A126      TCGA-AO-A128      TCGA-AO-A129      TCGA-AO-A12A 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A12B      TCGA-AO-A12D      TCGA-AO-A12E      TCGA-AO-A12F 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A12G      TCGA-AO-A12H      TCGA-AO-A1KO      TCGA-AO-A1KP 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A1KR      TCGA-AO-A1KS      TCGA-AQ-A04H      TCGA-AQ-A04J 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AQ-A04L      TCGA-AQ-A1H2      TCGA-AQ-A1H3      TCGA-AR-A0TS 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A0TU      TCGA-AR-A0TX      TCGA-AR-A0TY      TCGA-AR-A0U0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A0U1      TCGA-AR-A0U2      TCGA-AR-A0U3      TCGA-AR-A1AH 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A1AI      TCGA-AR-A1AJ      TCGA-AR-A1AK      TCGA-AR-A1AL 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A1AN      TCGA-AR-A1AO      TCGA-AR-A1AP      TCGA-AR-A1AQ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A1AS      TCGA-AR-A1AT      TCGA-AR-A1AU      TCGA-AR-A1AV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A1AW      TCGA-AR-A1AX      TCGA-AR-A1AY      TCGA-AR-A24H 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A24K      TCGA-AR-A24L      TCGA-AR-A24M      TCGA-AR-A24N 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A24O      TCGA-AR-A24P      TCGA-AR-A24Q      TCGA-AR-A24R 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A24S      TCGA-AR-A24T      TCGA-AR-A24U      TCGA-AR-A24V 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A24W      TCGA-AR-A24X      TCGA-AR-A24Z      TCGA-AR-A250 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A251      TCGA-AR-A252      TCGA-AR-A254      TCGA-AR-A255 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A256      TCGA-AR-A2LE      TCGA-AR-A2LH      TCGA-AR-A2LJ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A2LK      TCGA-AR-A2LM      TCGA-AR-A2LN      TCGA-AR-A2LO 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A2LQ      TCGA-AR-A5QN      TCGA-AR-A5QP      TCGA-AR-A5QQ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0I1      TCGA-B6-A0I2      TCGA-B6-A0I5      TCGA-B6-A0I6 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0IA      TCGA-B6-A0IB      TCGA-B6-A0IE      TCGA-B6-A0IG 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0IH      TCGA-B6-A0IJ      TCGA-B6-A0IK      TCGA-B6-A0IM 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0IO      TCGA-B6-A0IP      TCGA-B6-A0IQ      TCGA-B6-A0RE 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0RG      TCGA-B6-A0RH      TCGA-B6-A0RI      TCGA-B6-A0RN 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0RO      TCGA-B6-A0RP      TCGA-B6-A0RQ      TCGA-B6-A0RT 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0RU      TCGA-B6-A0RV      TCGA-B6-A0WT      TCGA-B6-A0WV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0WW      TCGA-B6-A0WX      TCGA-B6-A0WY      TCGA-B6-A0WZ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0X0      TCGA-B6-A0X1      TCGA-B6-A0X4      TCGA-B6-A0X5 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A1KC      TCGA-B6-A1KF      TCGA-B6-A1KI      TCGA-B6-A1KN 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A2IU      TCGA-B6-A3ZX      TCGA-B6-A400      TCGA-B6-A401 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A402      TCGA-B6-A408      TCGA-B6-A409      TCGA-B6-A40B 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A40C      TCGA-BH-A0AU      TCGA-BH-A0AV      TCGA-BH-A0AW 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0AY      TCGA-BH-A0AZ      TCGA-BH-A0B0      TCGA-BH-A0B1 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0B3      TCGA-BH-A0B4      TCGA-BH-A0B5      TCGA-BH-A0B7 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0B8      TCGA-BH-A0B9      TCGA-BH-A0BA      TCGA-BH-A0BC 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0BD      TCGA-BH-A0BF      TCGA-BH-A0BG      TCGA-BH-A0BJ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0BL      TCGA-BH-A0BM      TCGA-BH-A0BO      TCGA-BH-A0BP 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0BQ      TCGA-BH-A0BR      TCGA-BH-A0BS      TCGA-BH-A0BV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0BW      TCGA-BH-A0BZ      TCGA-BH-A0C0      TCGA-BH-A0C1 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0C3      TCGA-BH-A0C7      TCGA-BH-A0DD      TCGA-BH-A0DE 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0DG      TCGA-BH-A0DH      TCGA-BH-A0DI      TCGA-BH-A0DK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0DL      TCGA-BH-A0DP      TCGA-BH-A0DQ      TCGA-BH-A0DS 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0DT      TCGA-BH-A0DV      TCGA-BH-A0DX      TCGA-BH-A0DZ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0E0      TCGA-BH-A0E1      TCGA-BH-A0E2      TCGA-BH-A0E6 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0E7      TCGA-BH-A0E9      TCGA-BH-A0EB      TCGA-BH-A0EE 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0EI      TCGA-BH-A0GY      TCGA-BH-A0GZ      TCGA-BH-A0H0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0H3      TCGA-BH-A0H5      TCGA-BH-A0H6      TCGA-BH-A0H7 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0H9      TCGA-BH-A0HA      TCGA-BH-A0HB      TCGA-BH-A0HF 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0HI      TCGA-BH-A0HK      TCGA-BH-A0HL      TCGA-BH-A0HN 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0HO      TCGA-BH-A0HP      TCGA-BH-A0HQ      TCGA-BH-A0HU 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0HW      TCGA-BH-A0HX      TCGA-BH-A0HY      TCGA-BH-A0RX 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0W3      TCGA-BH-A0W5      TCGA-BH-A0W7      TCGA-BH-A0WA 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A18F      TCGA-BH-A18G      TCGA-BH-A18I      TCGA-BH-A18K 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A18L      TCGA-BH-A18M      TCGA-BH-A18N      TCGA-BH-A18P 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A18Q      TCGA-BH-A18R      TCGA-BH-A18S      TCGA-BH-A18U 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A18V      TCGA-BH-A1EO      TCGA-BH-A1ES      TCGA-BH-A1ET 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A1EV      TCGA-BH-A1EW      TCGA-BH-A1EX      TCGA-BH-A1EY 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A1F0      TCGA-BH-A1F2      TCGA-BH-A1F6      TCGA-BH-A1F8 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A1FC      TCGA-BH-A1FD      TCGA-BH-A1FE      TCGA-BH-A1FH 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A1FJ      TCGA-BH-A1FL      TCGA-BH-A1FM      TCGA-BH-A1FN 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A1FR      TCGA-BH-A1FU      TCGA-BH-A201      TCGA-BH-A202 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A203      TCGA-BH-A204      TCGA-BH-A208      TCGA-BH-A209 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A28O      TCGA-BH-A28Q      TCGA-BH-A2L8      TCGA-BH-A42V 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A5IZ      TCGA-BH-A5J0      TCGA-C8-A12K      TCGA-C8-A12T 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-C8-A12V      TCGA-C8-A12Z      TCGA-C8-A131      TCGA-C8-A132 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-C8-A135      TCGA-C8-A273      TCGA-C8-A3M7      TCGA-D8-A13Y 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A13Z      TCGA-D8-A140      TCGA-D8-A141      TCGA-D8-A142 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A143      TCGA-D8-A145      TCGA-D8-A147      TCGA-D8-A1J8 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1J9      TCGA-D8-A1JB      TCGA-D8-A1JC      TCGA-D8-A1JD 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1JE      TCGA-D8-A1JF      TCGA-D8-A1JG      TCGA-D8-A1JI 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1JJ      TCGA-D8-A1JK      TCGA-D8-A1JL      TCGA-D8-A1JM 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1JN      TCGA-D8-A1JS      TCGA-D8-A1JT      TCGA-D8-A1JU 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1X5      TCGA-D8-A1X6      TCGA-D8-A1X7      TCGA-D8-A1X8 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1X9      TCGA-D8-A1XA      TCGA-D8-A1XB      TCGA-D8-A1XC 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1XF      TCGA-D8-A1XG      TCGA-D8-A1XJ      TCGA-D8-A1XK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1XL      TCGA-D8-A1XM      TCGA-D8-A1XO      TCGA-D8-A1XQ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1XR      TCGA-D8-A1XS      TCGA-D8-A1XT      TCGA-D8-A1XU 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1XV      TCGA-D8-A1XW      TCGA-D8-A1XY      TCGA-D8-A1XZ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1Y0      TCGA-D8-A1Y1      TCGA-D8-A1Y2      TCGA-D8-A1Y3 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A27E      TCGA-D8-A27F      TCGA-D8-A27G      TCGA-D8-A27I 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A27K      TCGA-D8-A27L      TCGA-D8-A27N      TCGA-D8-A27P 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A27R      TCGA-D8-A27T      TCGA-D8-A27V      TCGA-D8-A27W 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A3Z5      TCGA-D8-A3Z6      TCGA-D8-A4Z1      TCGA-E2-A105 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A107      TCGA-E2-A108      TCGA-E2-A109      TCGA-E2-A10A 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A10B      TCGA-E2-A10C      TCGA-E2-A10E      TCGA-E2-A10F 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A14N      TCGA-E2-A14O      TCGA-E2-A14P      TCGA-E2-A14Q 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A14R      TCGA-E2-A14S      TCGA-E2-A14T      TCGA-E2-A14U 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A14V      TCGA-E2-A14W      TCGA-E2-A14X      TCGA-E2-A14Y 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A14Z      TCGA-E2-A150      TCGA-E2-A152      TCGA-E2-A153 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A154      TCGA-E2-A155      TCGA-E2-A156      TCGA-E2-A159 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A15A      TCGA-E2-A15C      TCGA-E2-A15D      TCGA-E2-A15E 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A15F      TCGA-E2-A15G      TCGA-E2-A15H      TCGA-E2-A15I 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A15J      TCGA-E2-A15K      TCGA-E2-A15L      TCGA-E2-A15M 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A15P      TCGA-E2-A15R      TCGA-E2-A15S      TCGA-E2-A15T 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1AZ      TCGA-E2-A1B0      TCGA-E2-A1B1      TCGA-E2-A1B4 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1B5      TCGA-E2-A1B6      TCGA-E2-A1BD      TCGA-E2-A1IE 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1IF      TCGA-E2-A1IG      TCGA-E2-A1IH      TCGA-E2-A1II 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1IJ      TCGA-E2-A1IK      TCGA-E2-A1IL      TCGA-E2-A1IN 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1IO      TCGA-E2-A1IU      TCGA-E2-A1L6      TCGA-E2-A1L7 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1L9      TCGA-E2-A1LA      TCGA-E2-A1LB      TCGA-E2-A1LE 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1LH      TCGA-E2-A1LI      TCGA-E2-A1LK      TCGA-E2-A1LL 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1LS      TCGA-E2-A2P6      TCGA-E2-A3DX      TCGA-E2-A56Z 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A570      TCGA-E2-A573      TCGA-E2-A574      TCGA-E9-A1N3 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1N4      TCGA-E9-A1N5      TCGA-E9-A1N8      TCGA-E9-A1N9 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1NA      TCGA-E9-A1NC      TCGA-E9-A1ND      TCGA-E9-A1NE 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1NF      TCGA-E9-A1NG      TCGA-E9-A1NH      TCGA-E9-A1NI 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1QZ      TCGA-E9-A1R0      TCGA-E9-A1R2      TCGA-E9-A1R3 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1R4      TCGA-E9-A1R5      TCGA-E9-A1R6      TCGA-E9-A1R7 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1RA      TCGA-E9-A1RB      TCGA-E9-A1RC      TCGA-E9-A1RD 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1RE      TCGA-E9-A1RF      TCGA-E9-A1RG      TCGA-E9-A1RH 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1RI      TCGA-E9-A226      TCGA-E9-A227      TCGA-E9-A228 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A229      TCGA-E9-A22A      TCGA-E9-A22B      TCGA-E9-A22D 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A22E      TCGA-E9-A22G      TCGA-E9-A22H      TCGA-E9-A243 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A244      TCGA-E9-A245      TCGA-E9-A247      TCGA-E9-A248 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A249      TCGA-E9-A24A      TCGA-E9-A295      TCGA-E9-A2JS 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A2JT      TCGA-E9-A3HO      TCGA-E9-A3Q9      TCGA-E9-A3QA 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A3X8      TCGA-E9-A54X      TCGA-E9-A54Y      TCGA-E9-A5FK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A5FL      TCGA-E9-A5UO      TCGA-E9-A5UP      TCGA-EW-A1IW 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1IX      TCGA-EW-A1IY      TCGA-EW-A1IZ      TCGA-EW-A1J1 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1J2      TCGA-EW-A1J3      TCGA-EW-A1J6      TCGA-EW-A1OV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1OX      TCGA-EW-A1OY      TCGA-EW-A1OZ      TCGA-EW-A1P0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1P1      TCGA-EW-A1P4      TCGA-EW-A1P5      TCGA-EW-A1P6 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1P7      TCGA-EW-A1P8      TCGA-EW-A1PA      TCGA-EW-A1PB 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1PC      TCGA-EW-A1PD      TCGA-EW-A1PE      TCGA-EW-A1PG 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1PH      TCGA-EW-A2FR      TCGA-EW-A2FS      TCGA-EW-A2FV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A2FW      TCGA-EW-A3E8      TCGA-EW-A3U0      TCGA-EW-A423 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-GI-A2C8      TCGA-GI-A2C9      TCGA-GM-A2D9      TCGA-GM-A2DA 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-GM-A2DB      TCGA-GM-A2DC      TCGA-GM-A2DF      TCGA-GM-A2DH 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-GM-A2DI      TCGA-GM-A2DK      TCGA-GM-A2DL      TCGA-GM-A2DM 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-GM-A2DN      TCGA-GM-A3NW      TCGA-GM-A3NY      TCGA-GM-A3XG 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-GM-A3XL      TCGA-GM-A3XN      TCGA-GM-A4E0      TCGA-GM-A5PV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-GM-A5PX      TCGA-HN-A2NL      TCGA-HN-A2OB      TCGA-JL-A3YW 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-JL-A3YX      TCGA-LL-A441      TCGA-LL-A5YL      TCGA-LL-A5YN 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-LL-A5YO      TCGA-LQ-A4E4      TCGA-MS-A51U      TCGA-OK-A5Q2 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-OL-A5RV      TCGA-OL-A5RW      TCGA-OL-A5RY      TCGA-OL-A5S0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-OL-A66I      TCGA-OL-A66J      TCGA-PE-A5DC      TCGA-PE-A5DD 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-PE-A5DE 
"NBPF9 WILD-TYPE" 
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NBPF9 MUTATED                                  0     0
  NBPF9 WILD-TYPE                                1    57
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  NBPF9 MUTATED                           0     1
  NBPF9 WILD-TYPE                       121   704
D33V11, multiclass
[1] "Remove cluster labels:" "NBPF9 MUTATED"         
clus
  NBPF9 MUTATED NBPF9 WILD-TYPE 
              1             883 
     TCGA-A2-A04V      TCGA-A2-A04Y      TCGA-A2-A0CQ      TCGA-A2-A1G4 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A25A      TCGA-A7-A0CD      TCGA-A7-A13G      TCGA-A7-A26E 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A26F      TCGA-A7-A26H      TCGA-A7-A26I      TCGA-A7-A2KD 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A3J1      TCGA-A7-A426      TCGA-A7-A5ZX      TCGA-AC-A3W5 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A3W6      TCGA-AC-A5EI      TCGA-AC-A5XS      TCGA-AC-A62X 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A0JI      TCGA-AO-A1KT      TCGA-AQ-A0Y5      TCGA-AQ-A54N 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AQ-A54O      TCGA-AR-A1AM      TCGA-AR-A1AR      TCGA-AR-A2LL 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A2LR      TCGA-AR-A5QM      TCGA-B6-A0I8      TCGA-BH-A0B6 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0DO      TCGA-BH-A0EA      TCGA-BH-A18H      TCGA-BH-A1F5 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-C8-A1HL      TCGA-D8-A146      TCGA-E2-A158      TCGA-E2-A15O 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1L8      TCGA-E2-A1LG      TCGA-E2-A2P5      TCGA-EW-A1J5 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1P3      TCGA-GM-A2DD      TCGA-GM-A2DO      TCGA-LL-A440 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-LL-A50Y      TCGA-LL-A5YP      TCGA-OL-A5RU      TCGA-A1-A0SB 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A1-A0SD      TCGA-A1-A0SE      TCGA-A1-A0SF      TCGA-A1-A0SG 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A1-A0SH      TCGA-A1-A0SI      TCGA-A1-A0SJ      TCGA-A1-A0SK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A1-A0SM      TCGA-A1-A0SN      TCGA-A1-A0SQ      TCGA-A2-A04N 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A04P      TCGA-A2-A04Q      TCGA-A2-A04R      TCGA-A2-A04T 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A04U      TCGA-A2-A04W      TCGA-A2-A04X      TCGA-A2-A0CK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0CL      TCGA-A2-A0CM      TCGA-A2-A0CO      TCGA-A2-A0CP 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0CR      TCGA-A2-A0CS      TCGA-A2-A0CT      TCGA-A2-A0CU 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0CV      TCGA-A2-A0CW      TCGA-A2-A0CX      TCGA-A2-A0CZ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0D0      TCGA-A2-A0D1      TCGA-A2-A0D2      TCGA-A2-A0D3 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0D4      TCGA-A2-A0EM      TCGA-A2-A0EN      TCGA-A2-A0EO 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0EP      TCGA-A2-A0EQ      TCGA-A2-A0ER      TCGA-A2-A0ES 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0ET      TCGA-A2-A0EU      TCGA-A2-A0EV      TCGA-A2-A0EW 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0EX      TCGA-A2-A0EY      TCGA-A2-A0ST      TCGA-A2-A0SU 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0SV      TCGA-A2-A0SW      TCGA-A2-A0SX      TCGA-A2-A0SY 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0T0      TCGA-A2-A0T1      TCGA-A2-A0T2      TCGA-A2-A0T3 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0T4      TCGA-A2-A0T5      TCGA-A2-A0T6      TCGA-A2-A0T7 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0YC      TCGA-A2-A0YD      TCGA-A2-A0YE      TCGA-A2-A0YF 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0YG      TCGA-A2-A0YH      TCGA-A2-A0YI      TCGA-A2-A0YJ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A0YK      TCGA-A2-A0YL      TCGA-A2-A0YM      TCGA-A2-A0YT 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A1FV      TCGA-A2-A1FW      TCGA-A2-A1FX      TCGA-A2-A1FZ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A1G0      TCGA-A2-A1G1      TCGA-A2-A1G6      TCGA-A2-A259 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A25B      TCGA-A2-A25C      TCGA-A2-A25D      TCGA-A2-A25E 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A25F      TCGA-A2-A3KC      TCGA-A2-A3KD      TCGA-A2-A3XS 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A3XT      TCGA-A2-A3XU      TCGA-A2-A3XV      TCGA-A2-A3XW 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A3XX      TCGA-A2-A3XY      TCGA-A2-A3XZ      TCGA-A2-A3Y0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A4RW      TCGA-A2-A4RX      TCGA-A2-A4RY      TCGA-A2-A4S0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A2-A4S1      TCGA-A2-A4S2      TCGA-A2-A4S3      TCGA-A7-A0CE 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A0CG      TCGA-A7-A0CH      TCGA-A7-A0CJ      TCGA-A7-A0D9 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A0DA      TCGA-A7-A0DB      TCGA-A7-A0DC      TCGA-A7-A13D 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A13E      TCGA-A7-A13F      TCGA-A7-A13H      TCGA-A7-A26G 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A26J      TCGA-A7-A3IY      TCGA-A7-A3IZ      TCGA-A7-A3J0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A3RF      TCGA-A7-A425      TCGA-A7-A4SA      TCGA-A7-A4SB 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A4SC      TCGA-A7-A4SD      TCGA-A7-A4SE      TCGA-A7-A4SF 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-A7-A56D      TCGA-A7-A5ZV      TCGA-A7-A5ZW      TCGA-AC-A23C 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A23E      TCGA-AC-A23G      TCGA-AC-A23H      TCGA-AC-A2B8 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A2BK      TCGA-AC-A2BM      TCGA-AC-A2FB      TCGA-AC-A2FE 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A2FF      TCGA-AC-A2FG      TCGA-AC-A2FK      TCGA-AC-A2FM 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A2FO      TCGA-AC-A2QH      TCGA-AC-A2QI      TCGA-AC-A2QJ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A3BB      TCGA-AC-A3EH      TCGA-AC-A3HN      TCGA-AC-A3OD 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A3QP      TCGA-AC-A3TM      TCGA-AC-A3TN      TCGA-AC-A3W7 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A3YI      TCGA-AC-A3YJ      TCGA-AC-A5EH      TCGA-AC-A5XU 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AC-A62Y      TCGA-AN-A03X      TCGA-AN-A03Y      TCGA-AN-A041 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A046      TCGA-AN-A049      TCGA-AN-A04A      TCGA-AN-A04C 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A04D      TCGA-AN-A0AJ      TCGA-AN-A0AK      TCGA-AN-A0AM 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A0AR      TCGA-AN-A0AS      TCGA-AN-A0AT      TCGA-AN-A0FD 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A0FF      TCGA-AN-A0FJ      TCGA-AN-A0FK      TCGA-AN-A0FL 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A0FN      TCGA-AN-A0FS      TCGA-AN-A0FT      TCGA-AN-A0FV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A0FW      TCGA-AN-A0FX      TCGA-AN-A0FY      TCGA-AN-A0FZ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A0G0      TCGA-AN-A0XL      TCGA-AN-A0XN      TCGA-AN-A0XO 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A0XP      TCGA-AN-A0XR      TCGA-AN-A0XS      TCGA-AN-A0XT 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AN-A0XU      TCGA-AN-A0XV      TCGA-AN-A0XW      TCGA-AO-A03L 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A03M      TCGA-AO-A03N      TCGA-AO-A03O      TCGA-AO-A03P 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A03R      TCGA-AO-A03T      TCGA-AO-A03U      TCGA-AO-A03V 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A0J2      TCGA-AO-A0J3      TCGA-AO-A0J4      TCGA-AO-A0J5 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A0J6      TCGA-AO-A0J7      TCGA-AO-A0J8      TCGA-AO-A0J9 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A0JA      TCGA-AO-A0JB      TCGA-AO-A0JC      TCGA-AO-A0JD 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A0JE      TCGA-AO-A0JF      TCGA-AO-A0JJ      TCGA-AO-A0JL 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A124      TCGA-AO-A125      TCGA-AO-A126      TCGA-AO-A128 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A129      TCGA-AO-A12A      TCGA-AO-A12B      TCGA-AO-A12D 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A12E      TCGA-AO-A12F      TCGA-AO-A12G      TCGA-AO-A12H 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AO-A1KO      TCGA-AO-A1KP      TCGA-AO-A1KR      TCGA-AO-A1KS 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AQ-A04H      TCGA-AQ-A04J      TCGA-AQ-A04L      TCGA-AQ-A1H2 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AQ-A1H3      TCGA-AR-A0TS      TCGA-AR-A0TY      TCGA-AR-A0U0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A0U1      TCGA-AR-A0U2      TCGA-AR-A0U3      TCGA-AR-A1AH 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A1AI      TCGA-AR-A1AJ      TCGA-AR-A1AK      TCGA-AR-A1AL 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A1AN      TCGA-AR-A1AO      TCGA-AR-A1AP      TCGA-AR-A1AQ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A1AS      TCGA-AR-A1AT      TCGA-AR-A1AU      TCGA-AR-A1AV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A1AW      TCGA-AR-A1AX      TCGA-AR-A1AY      TCGA-AR-A24H 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A24K      TCGA-AR-A24L      TCGA-AR-A24M      TCGA-AR-A24N 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A24O      TCGA-AR-A24P      TCGA-AR-A24Q      TCGA-AR-A24R 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A24S      TCGA-AR-A24T      TCGA-AR-A24U      TCGA-AR-A24V 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A24W      TCGA-AR-A24X      TCGA-AR-A24Z      TCGA-AR-A250 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A251      TCGA-AR-A252      TCGA-AR-A254      TCGA-AR-A255 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A256      TCGA-AR-A2LE      TCGA-AR-A2LH      TCGA-AR-A2LJ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A2LK      TCGA-AR-A2LM      TCGA-AR-A2LN      TCGA-AR-A2LO 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-AR-A2LQ      TCGA-AR-A5QN      TCGA-AR-A5QP      TCGA-AR-A5QQ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0I1      TCGA-B6-A0I2      TCGA-B6-A0I5      TCGA-B6-A0I6 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0I9      TCGA-B6-A0IA      TCGA-B6-A0IB      TCGA-B6-A0IC 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0IE      TCGA-B6-A0IG      TCGA-B6-A0IH      TCGA-B6-A0IJ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0IK      TCGA-B6-A0IM      TCGA-B6-A0IN      TCGA-B6-A0IO 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0IP      TCGA-B6-A0IQ      TCGA-B6-A0RE      TCGA-B6-A0RG 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0RH      TCGA-B6-A0RI      TCGA-B6-A0RN      TCGA-B6-A0RO 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0RP      TCGA-B6-A0RQ      TCGA-B6-A0RT      TCGA-B6-A0RU 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0RV      TCGA-B6-A0WS      TCGA-B6-A0WT      TCGA-B6-A0WV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0WW      TCGA-B6-A0WX      TCGA-B6-A0WY      TCGA-B6-A0WZ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0X0      TCGA-B6-A0X1      TCGA-B6-A0X4      TCGA-B6-A0X5 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A0X7      TCGA-B6-A1KC      TCGA-B6-A1KF      TCGA-B6-A1KI 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A1KN      TCGA-B6-A2IU      TCGA-B6-A3ZX      TCGA-B6-A400 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A401      TCGA-B6-A402      TCGA-B6-A408      TCGA-B6-A409 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-B6-A40B      TCGA-B6-A40C      TCGA-BH-A0AU      TCGA-BH-A0AV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0AW      TCGA-BH-A0AY      TCGA-BH-A0AZ      TCGA-BH-A0B0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0B1      TCGA-BH-A0B3      TCGA-BH-A0B4      TCGA-BH-A0B5 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0B7      TCGA-BH-A0B8      TCGA-BH-A0B9      TCGA-BH-A0BA 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0BC      TCGA-BH-A0BD      TCGA-BH-A0BF      TCGA-BH-A0BG 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0BJ      TCGA-BH-A0BL      TCGA-BH-A0BM      TCGA-BH-A0BO 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0BP      TCGA-BH-A0BQ      TCGA-BH-A0BR      TCGA-BH-A0BS 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0BT      TCGA-BH-A0BV      TCGA-BH-A0BW      TCGA-BH-A0BZ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0C0      TCGA-BH-A0C1      TCGA-BH-A0C3      TCGA-BH-A0C7 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0DD      TCGA-BH-A0DE      TCGA-BH-A0DG      TCGA-BH-A0DH 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0DI      TCGA-BH-A0DK      TCGA-BH-A0DL      TCGA-BH-A0DP 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0DQ      TCGA-BH-A0DS      TCGA-BH-A0DT      TCGA-BH-A0DV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0DX      TCGA-BH-A0DZ      TCGA-BH-A0E0      TCGA-BH-A0E1 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0E2      TCGA-BH-A0E6      TCGA-BH-A0E7      TCGA-BH-A0E9 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0EB      TCGA-BH-A0EE      TCGA-BH-A0EI      TCGA-BH-A0GY 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0GZ      TCGA-BH-A0H0      TCGA-BH-A0H3      TCGA-BH-A0H5 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0H6      TCGA-BH-A0H7      TCGA-BH-A0H9      TCGA-BH-A0HA 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0HB      TCGA-BH-A0HF      TCGA-BH-A0HI      TCGA-BH-A0HK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0HL      TCGA-BH-A0HN      TCGA-BH-A0HO      TCGA-BH-A0HP 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0HQ      TCGA-BH-A0HU      TCGA-BH-A0HW      TCGA-BH-A0HX 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0HY      TCGA-BH-A0RX      TCGA-BH-A0W3      TCGA-BH-A0W4 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A0W5      TCGA-BH-A0W7      TCGA-BH-A0WA      TCGA-BH-A18F 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A18G      TCGA-BH-A18I      TCGA-BH-A18J      TCGA-BH-A18K 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A18L      TCGA-BH-A18M      TCGA-BH-A18N      TCGA-BH-A18P 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A18Q      TCGA-BH-A18R      TCGA-BH-A18S      TCGA-BH-A18T 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A18U      TCGA-BH-A18V      TCGA-BH-A1EN      TCGA-BH-A1EO 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A1ES      TCGA-BH-A1ET      TCGA-BH-A1EU      TCGA-BH-A1EV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A1EW      TCGA-BH-A1EX      TCGA-BH-A1EY      TCGA-BH-A1F0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A1F2      TCGA-BH-A1F6      TCGA-BH-A1F8      TCGA-BH-A1FC 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A1FD      TCGA-BH-A1FE      TCGA-BH-A1FG      TCGA-BH-A1FH 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A1FJ      TCGA-BH-A1FL      TCGA-BH-A1FM      TCGA-BH-A1FN 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A1FR      TCGA-BH-A1FU      TCGA-BH-A201      TCGA-BH-A202 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A203      TCGA-BH-A204      TCGA-BH-A208      TCGA-BH-A209 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A28O      TCGA-BH-A28Q      TCGA-BH-A2L8      TCGA-BH-A42T 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-BH-A42U      TCGA-BH-A42V      TCGA-BH-A5IZ      TCGA-BH-A5J0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-C8-A12K      TCGA-C8-A12L      TCGA-C8-A12M      TCGA-C8-A12N 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-C8-A12O      TCGA-C8-A12P      TCGA-C8-A12Q      TCGA-C8-A12T 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-C8-A12U      TCGA-C8-A12V      TCGA-C8-A12W      TCGA-C8-A12X 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-C8-A12Y      TCGA-C8-A12Z      TCGA-C8-A130      TCGA-C8-A131 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-C8-A132      TCGA-C8-A133      TCGA-C8-A134      TCGA-C8-A135 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-C8-A137      TCGA-C8-A138      TCGA-C8-A1HE      TCGA-C8-A1HF 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-C8-A1HG      TCGA-C8-A1HI      TCGA-C8-A1HJ      TCGA-C8-A1HK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-C8-A1HM      TCGA-C8-A1HN      TCGA-C8-A1HO      TCGA-C8-A26V 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-C8-A26W      TCGA-C8-A26X      TCGA-C8-A26Y      TCGA-C8-A26Z 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-C8-A273      TCGA-C8-A274      TCGA-C8-A275      TCGA-C8-A278 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-C8-A27A      TCGA-C8-A27B      TCGA-C8-A3M7      TCGA-C8-A3M8 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A13Y      TCGA-D8-A13Z      TCGA-D8-A140      TCGA-D8-A141 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A142      TCGA-D8-A143      TCGA-D8-A145      TCGA-D8-A147 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1J8      TCGA-D8-A1J9      TCGA-D8-A1JA      TCGA-D8-A1JB 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1JC      TCGA-D8-A1JD      TCGA-D8-A1JE      TCGA-D8-A1JF 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1JG      TCGA-D8-A1JH      TCGA-D8-A1JI      TCGA-D8-A1JJ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1JK      TCGA-D8-A1JL      TCGA-D8-A1JM      TCGA-D8-A1JN 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1JP      TCGA-D8-A1JS      TCGA-D8-A1JT      TCGA-D8-A1JU 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1X5      TCGA-D8-A1X6      TCGA-D8-A1X7      TCGA-D8-A1X8 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1X9      TCGA-D8-A1XA      TCGA-D8-A1XB      TCGA-D8-A1XC 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1XF      TCGA-D8-A1XG      TCGA-D8-A1XJ      TCGA-D8-A1XK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1XL      TCGA-D8-A1XM      TCGA-D8-A1XO      TCGA-D8-A1XQ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1XR      TCGA-D8-A1XS      TCGA-D8-A1XT      TCGA-D8-A1XU 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1XV      TCGA-D8-A1XW      TCGA-D8-A1XY      TCGA-D8-A1XZ 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A1Y0      TCGA-D8-A1Y1      TCGA-D8-A1Y2      TCGA-D8-A1Y3 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A27E      TCGA-D8-A27F      TCGA-D8-A27G      TCGA-D8-A27H 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A27I      TCGA-D8-A27K      TCGA-D8-A27L      TCGA-D8-A27M 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A27N      TCGA-D8-A27P      TCGA-D8-A27R      TCGA-D8-A27T 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A27V      TCGA-D8-A27W      TCGA-D8-A3Z5      TCGA-D8-A3Z6 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-D8-A4Z1      TCGA-E2-A105      TCGA-E2-A107      TCGA-E2-A108 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A109      TCGA-E2-A10A      TCGA-E2-A10B      TCGA-E2-A10C 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A10E      TCGA-E2-A10F      TCGA-E2-A14N      TCGA-E2-A14O 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A14P      TCGA-E2-A14Q      TCGA-E2-A14R      TCGA-E2-A14S 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A14T      TCGA-E2-A14U      TCGA-E2-A14V      TCGA-E2-A14W 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A14X      TCGA-E2-A14Y      TCGA-E2-A14Z      TCGA-E2-A150 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A152      TCGA-E2-A153      TCGA-E2-A154      TCGA-E2-A155 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A156      TCGA-E2-A159      TCGA-E2-A15A      TCGA-E2-A15C 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A15D      TCGA-E2-A15E      TCGA-E2-A15F      TCGA-E2-A15G 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A15H      TCGA-E2-A15I      TCGA-E2-A15J      TCGA-E2-A15K 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A15L      TCGA-E2-A15M      TCGA-E2-A15P      TCGA-E2-A15R 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A15S      TCGA-E2-A15T      TCGA-E2-A1AZ      TCGA-E2-A1B0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1B1      TCGA-E2-A1B4      TCGA-E2-A1B5      TCGA-E2-A1B6 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1BD      TCGA-E2-A1IE      TCGA-E2-A1IF      TCGA-E2-A1IG 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1IH      TCGA-E2-A1II      TCGA-E2-A1IJ      TCGA-E2-A1IK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1IL      TCGA-E2-A1IN      TCGA-E2-A1IO      TCGA-E2-A1IU 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1L6      TCGA-E2-A1L7      TCGA-E2-A1L9      TCGA-E2-A1LB 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1LE      TCGA-E2-A1LH      TCGA-E2-A1LI      TCGA-E2-A1LK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A1LL      TCGA-E2-A1LS      TCGA-E2-A3DX      TCGA-E2-A56Z 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E2-A570      TCGA-E2-A573      TCGA-E2-A574      TCGA-E9-A1N3 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1N4      TCGA-E9-A1N5      TCGA-E9-A1N8      TCGA-E9-A1N9 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1NA      TCGA-E9-A1NC      TCGA-E9-A1ND      TCGA-E9-A1NE 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1NF      TCGA-E9-A1NG      TCGA-E9-A1NH      TCGA-E9-A1NI 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1QZ      TCGA-E9-A1R0      TCGA-E9-A1R2      TCGA-E9-A1R3 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1R4      TCGA-E9-A1R5      TCGA-E9-A1R6      TCGA-E9-A1R7 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1RA      TCGA-E9-A1RB      TCGA-E9-A1RC      TCGA-E9-A1RD 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1RE      TCGA-E9-A1RF      TCGA-E9-A1RG      TCGA-E9-A1RH 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A1RI      TCGA-E9-A226      TCGA-E9-A227      TCGA-E9-A228 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A229      TCGA-E9-A22A      TCGA-E9-A22B      TCGA-E9-A22D 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A22E      TCGA-E9-A22G      TCGA-E9-A22H      TCGA-E9-A243 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A244      TCGA-E9-A245      TCGA-E9-A247      TCGA-E9-A248 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A249      TCGA-E9-A24A      TCGA-E9-A295      TCGA-E9-A2JS 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A2JT      TCGA-E9-A3HO      TCGA-E9-A3Q9      TCGA-E9-A3QA 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A3X8      TCGA-E9-A54X      TCGA-E9-A54Y      TCGA-E9-A5FK 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-E9-A5FL      TCGA-E9-A5UO      TCGA-E9-A5UP      TCGA-EW-A1IW 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1IX      TCGA-EW-A1IY      TCGA-EW-A1IZ      TCGA-EW-A1J1 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1J2      TCGA-EW-A1J3      TCGA-EW-A1J6      TCGA-EW-A1OV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1OX      TCGA-EW-A1OY      TCGA-EW-A1OZ      TCGA-EW-A1P0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1P1      TCGA-EW-A1P4      TCGA-EW-A1P5      TCGA-EW-A1P6 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1P7      TCGA-EW-A1P8      TCGA-EW-A1PA      TCGA-EW-A1PB 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1PC      TCGA-EW-A1PD      TCGA-EW-A1PE      TCGA-EW-A1PG 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A1PH      TCGA-EW-A2FR      TCGA-EW-A2FS      TCGA-EW-A2FV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-EW-A2FW      TCGA-EW-A3E8      TCGA-EW-A3U0      TCGA-EW-A423 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-GI-A2C8      TCGA-GI-A2C9      TCGA-GM-A2D9      TCGA-GM-A2DA 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-GM-A2DB      TCGA-GM-A2DC      TCGA-GM-A2DF      TCGA-GM-A2DH 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-GM-A2DI      TCGA-GM-A2DK      TCGA-GM-A2DL      TCGA-GM-A2DM 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-GM-A2DN      TCGA-GM-A3NW      TCGA-GM-A3NY      TCGA-GM-A3XG 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-GM-A3XL      TCGA-GM-A3XN      TCGA-GM-A4E0      TCGA-GM-A5PV 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-GM-A5PX      TCGA-JL-A3YW      TCGA-JL-A3YX      TCGA-LL-A441 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-LL-A5YL      TCGA-LL-A5YM      TCGA-LL-A5YN      TCGA-LL-A5YO 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-LQ-A4E4      TCGA-MS-A51U      TCGA-OL-A5D6      TCGA-OL-A5D7 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-OL-A5D8      TCGA-OL-A5DA      TCGA-OL-A5RV      TCGA-OL-A5RW 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-OL-A5RX      TCGA-OL-A5RY      TCGA-OL-A5RZ      TCGA-OL-A5S0 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-OL-A66H      TCGA-OL-A66I      TCGA-OL-A66J      TCGA-OL-A66K 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
     TCGA-PE-A5DC      TCGA-PE-A5DD      TCGA-PE-A5DE 
"NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" "NBPF9 WILD-TYPE" 
D33V12, binary
                 cls
clus                0   1
  NBPF9 MUTATED     0   1
  NBPF9 WILD-TYPE  34 771
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NBPF9 MUTATED      0    1
  NBPF9 WILD-TYPE   34  771
                        clus
vv                       NBPF9 MUTATED NBPF9 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO             1             771
[1] 2 2
[1] FALSE

Clustering(34) Variable = MYB MUTATION ANALYSIS
D34V1, survival
               sevent
clus2             0   1
  MYB MUTATED    11   0
  MYB WILD-TYPE 815 138
  MYB MUTATED MYB WILD-TYPE 
           11           953 
  MYB MUTATED MYB WILD-TYPE 
            0           138 
$`MYB MUTATED`
TCGA-A1-A0SB TCGA-A1-A0SI TCGA-A2-A0ET TCGA-A2-A0SY TCGA-A2-A1FZ TCGA-A8-A095 
        8.52        20.88        35.05        44.28        22.45        41.98 
TCGA-B6-A0RE TCGA-BH-A0E7 TCGA-BH-A0HQ TCGA-D8-A142 TCGA-E2-A15G 
      255.68        44.81        36.85        13.97        18.21 

$`MYB WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SD 
       85.35        24.95        25.05        14.79        40.08        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SJ TCGA-A1-A0SK 
       43.43        48.10        14.27        47.24        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        39.32        18.21       143.15        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
      121.94        73.84        87.25       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12        24.79       114.81        92.48       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ 
       75.25         5.19        98.99       107.93        56.81        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       34.29        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0T1 
       54.64        27.12        44.88        50.43        17.52        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 
        8.38        49.84        20.52        17.46        18.90        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH 
       32.55        25.28        18.21        50.47        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT 
       49.48        18.61        19.33        48.46        31.73        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 
       23.47        17.36        60.72        20.25        19.20        16.47 
TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F 
       52.47        42.44        17.19        18.15       105.34        10.59 
TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV 
       36.23        39.65        33.93        91.07        29.98        32.75 
TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW 
       56.28        47.31        35.93        50.37        50.83         7.30 
TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 
       24.39        21.30        23.21        26.96        21.14        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA 
       35.31        34.29        35.47        30.61        37.45        35.67 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H 
       33.11        29.79        31.73        20.19        25.15        29.56 
TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF 
       23.74        20.61        11.34        10.59        10.29        13.41 
TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE 
       14.70        14.93        13.74        14.66        14.50        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P 
       17.92        14.73        12.10        10.72        13.02        13.02 
TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 
        1.02        17.98        31.00        26.01         1.02        17.03 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G 
       53.98         9.01        43.00        33.99        18.97        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R 
       14.01        12.00        32.05         9.99        10.98         8.98 
TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 
       24.99         9.99        45.07        18.05        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
        0.99        38.01        28.96        19.96        12.00        37.05 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X 
        9.99        31.00        31.00         0.99       112.08        43.00 
TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       40.01        30.97        12.00         9.99         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       50.04        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       21.04         0.99        27.02        17.03        38.04        19.23 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72        22.26        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 
       16.31        14.83        22.19        25.05        14.99        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X 
       23.24        24.79        16.80        14.96        17.42         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.23         0.33         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        1.71         9.96         7.36         7.46         0.16         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        0.33         0.33         6.44         5.65         7.96         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW 
        7.59         7.17         6.90         7.04         0.33         0.36 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN 
        0.33         0.33         0.33         0.53         5.36         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU 
       12.33         0.30         0.33         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O 
        5.33         5.59        80.28        61.35        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       95.70        68.75        69.83        58.95        44.42        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 
       21.40        52.18        26.04        37.48        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE 
       53.03        21.53        50.70        50.86        72.00        76.77 
TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 
       65.10        62.04        55.33        71.80       115.27       113.62 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
      108.72       106.78       108.03       102.31        98.27        82.68 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       70.42        60.56        53.88        40.57        20.45        97.08 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 
       82.62        11.51        24.79        26.93       130.09        15.62 
TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 
       32.52        84.10        23.31        64.83        55.86        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      133.22        83.87       134.14       125.16       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
      103.86        97.68        96.00        86.07        93.90        99.32 
TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       37.81        41.82        94.29        61.28        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       33.73       160.90        50.89        94.22       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
      118.59         2.76       104.28       112.77        97.84       105.27 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
      102.84       105.30        50.96        98.76        98.66        89.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       99.62        93.30        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       40.54        33.30        38.96        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      281.29        32.58        11.90       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.52       146.50       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RG TCGA-B6-A0RH 
       84.59       165.76       129.07       140.88        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
      234.28       263.28       162.05       102.77       140.28        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      282.90       169.51        97.48       188.68        79.46        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       21.01       113.79       206.86       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       68.94        58.55        43.59       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
      170.17        37.87         7.07        85.35        74.99        68.12 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       18.84       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 
       25.55        63.09        81.44        37.74        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       70.22        84.13        51.58        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       18.21        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        81.73        77.98        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        78.28        15.65         3.22         2.56        79.00 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        70.88        16.27         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
        9.63        81.83        24.49        31.00        63.32        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        63.39        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK 
       41.00        52.96        26.50        23.90        20.38         5.85 
TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HU TCGA-BH-A0HW 
        2.37        16.96         2.50        13.61        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07        53.98        55.50        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       26.14        38.60        83.31        57.83       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.79        20.12        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
        0.16        12.03        12.33        12.95        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.53        12.36        12.95        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A143 TCGA-D8-A145 
       56.81        20.88        13.25        20.58        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I 
       22.82        17.29        20.71        21.63        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02        11.15        48.23        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       40.24         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       115.69       106.06       101.62       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        58.52        31.99        58.62        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       65.62        41.92        47.01        64.21        86.96 

  MYB MUTATED MYB WILD-TYPE 
         8.52          0.03 
  MYB MUTATED MYB WILD-TYPE 
       255.68        282.90 
  MYB MUTATED MYB WILD-TYPE 
        35.05         30.61 
[1] "8.5 - 255.7 (35.0)" "0.0 - 282.9 (30.6)"
[1] "hr="     "9500000"
D34V2, continuous
               vv
clus            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  MYB MUTATED         2        0        0        0         3         3
  MYB WILD-TYPE      86       71        6        4       323       224
               vv
clus            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  MYB MUTATED           0          3          0          0        0       1
  MYB WILD-TYPE         2        134         24         57       15      11
D34V3, multiclass
            clus
vv           MYB MUTATED MYB WILD-TYPE
  STAGE I              2            86
  STAGE IA             0            71
  STAGE IB             0             6
  STAGE II             0             4
  STAGE IIA            3           323
  STAGE IIB            3           224
  STAGE III            0             2
  STAGE IIIA           3           134
  STAGE IIIB           0            24
  STAGE IIIC           0            57
  STAGE IV             0            15
  STAGE X              1            11
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus             T1  T2  T3  T4
  MYB MUTATED     2   6   3   0
  MYB WILD-TYPE 255 558 117  35
D34V4, multiclass
    clus
vv   MYB MUTATED MYB WILD-TYPE
  T1           2           255
  T2           6           558
  T3           3           117
  T4           0            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus             N0  N1  N2  N3
  MYB MUTATED     7   4   1   0
  MYB WILD-TYPE 455 321 106  68
D34V5, multiclass
    clus
vv   MYB MUTATED MYB WILD-TYPE
  N0           7           455
  N1           4           321
  N2           1           106
  N3           0            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V6, binary
               cls
clus              0   1
  MYB MUTATED    12   0
  MYB WILD-TYPE 830  16
[1] "tbl2"
               cls
clus            [,1] [,2]
  MYB MUTATED     12    0
  MYB WILD-TYPE  830   16
   clus
vv  MYB MUTATED MYB WILD-TYPE
  0          12           830
  1           0            16
[1] 2 2
[1] FALSE
D34V7, binary
               cls
clus              0   1
  MYB MUTATED    12   0
  MYB WILD-TYPE 956   9
[1] "tbl2"
               cls
clus            [,1] [,2]
  MYB MUTATED     12    0
  MYB WILD-TYPE  956    9
        clus
vv       MYB MUTATED MYB WILD-TYPE
  FEMALE          12           956
  MALE             0             9
[1] 2 2
[1] FALSE
D34V8, binary
               cls
clus              0   1
  MYB MUTATED     2   7
  MYB WILD-TYPE 385 495
[1] "tbl2"
               cls
clus            [,1] [,2]
  MYB MUTATED      2    7
  MYB WILD-TYPE  385  495
     clus
vv    MYB MUTATED MYB WILD-TYPE
  NO            2           385
  YES           7           495
[1] 2 2
[1] FALSE
               vv
clus            INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  MYB MUTATED                            0                             8
  MYB WILD-TYPE                          1                           703
               vv
clus            INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  MYB MUTATED                                1                   0
  MYB WILD-TYPE                            171                   5
               vv
clus            METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  MYB MUTATED                       0                                1
  MYB WILD-TYPE                     6                               26
               vv
clus            MUCINOUS CARCINOMA OTHER, SPECIFY
  MYB MUTATED                    0              2
  MYB WILD-TYPE                 14             38
D34V9, multiclass
                                  clus
vv                                 MYB MUTATED MYB WILD-TYPE
  INFILTRATING CARCINOMA NOS                 0             1
  INFILTRATING DUCTAL CARCINOMA              8           703
  INFILTRATING LOBULAR CARCINOMA             1           171
  MEDULLARY CARCINOMA                        0             5
  METAPLASTIC CARCINOMA                      0             6
  MIXED HISTOLOGY (PLEASE SPECIFY)           1            26
  MUCINOUS CARCINOMA                         0            14
  OTHER, SPECIFY                             2            38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V10, continuous
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MYB MUTATED                                  0     0
  MYB WILD-TYPE                                1    57
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  MYB MUTATED                           1    10
  MYB WILD-TYPE                       120   695
D34V11, multiclass
                                  clus
vv                                 MYB MUTATED MYB WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      0            57
  BLACK OR AFRICAN AMERICAN                  1           120
  WHITE                                     10           695
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V12, binary
               cls
clus              0   1
  MYB MUTATED     0   9
  MYB WILD-TYPE  34 763
[1] "tbl2"
               cls
clus            [,1] [,2]
  MYB MUTATED      0    9
  MYB WILD-TYPE   34  763
                        clus
vv                       MYB MUTATED MYB WILD-TYPE
  HISPANIC OR LATINO               0            34
  NOT HISPANIC OR LATINO           9           763
[1] 2 2
[1] FALSE

Clustering(35) Variable = ZNF362 MUTATION ANALYSIS
D35V1, survival
                  sevent
clus2                0   1
  ZNF362 MUTATED     4   1
  ZNF362 WILD-TYPE 822 137
  ZNF362 MUTATED ZNF362 WILD-TYPE 
               5              959 
  ZNF362 MUTATED ZNF362 WILD-TYPE 
               1              137 
$`ZNF362 MUTATED`
TCGA-A2-A0CU TCGA-A8-A07Z TCGA-BH-A0BR TCGA-BH-A0HA TCGA-BH-A0HF 
        5.19        45.07        76.60        52.96        23.90 

$`ZNF362 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
      107.93        77.19        75.25        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       35.47        30.61        37.45        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J 
       31.73        20.19        25.15        29.56        23.74        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA 
       11.34        10.59        10.29        13.41        14.70        14.93 
TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       13.74        14.66        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       12.10        10.72        13.02        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        33.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27       113.62       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.03       102.31        98.27        82.68        70.42        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       23.31        64.83        55.86        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      134.14       125.16       108.36       101.00       103.86        97.68 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT 
       96.00        86.07        93.90        99.32        37.81        41.82 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      104.28       112.77        97.84       105.27       102.84       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
       50.96        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       85.64        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       11.90       275.87       129.57        50.70        65.52       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      263.28       162.05       102.77       140.28        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      169.51        97.48       188.68        79.46        18.35        21.01 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       58.55        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 
       37.87         7.07        85.35        74.99        68.12        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
      103.63        71.15        62.93        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       63.09        81.44        37.74        39.55        39.16        70.22 
TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       84.13        51.58        51.68        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       43.53        61.51        21.70        74.89        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       75.48        74.14        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO 
       26.50        20.38         5.85         2.37        16.96         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
       13.61        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        36.82        36.79        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       10.52       110.60        20.88        18.64        23.51        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        48.53        12.56        12.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       13.51        12.59        12.59        12.92        12.46        12.49 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.95        15.45        16.87        16.70         0.03         9.76 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z 
       24.56        14.43        33.99        12.95        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02        11.15        48.23        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       40.24         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       115.69       106.06       101.62       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        58.52        31.99        58.62        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       65.62        41.92        47.01        64.21        86.96 

  ZNF362 MUTATED ZNF362 WILD-TYPE 
            5.19             0.03 
  ZNF362 MUTATED ZNF362 WILD-TYPE 
            76.6            282.9 
  ZNF362 MUTATED ZNF362 WILD-TYPE 
           45.07            30.61 
[1] "5.2 - 76.6 (45.1)"  "0.0 - 282.9 (30.6)"
[1] "hr=" "1.7"
D35V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  ZNF362 MUTATED         2        1        0        0         2         0
  ZNF362 WILD-TYPE      86       70        6        4       324       227
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  ZNF362 MUTATED           0          0          0          0        0       0
  ZNF362 WILD-TYPE         2        137         24         57       15      12
D35V3, multiclass
            clus
vv           ZNF362 MUTATED ZNF362 WILD-TYPE
  STAGE I                 2               86
  STAGE IA                1               70
  STAGE IB                0                6
  STAGE II                0                4
  STAGE IIA               2              324
  STAGE IIB               0              227
  STAGE III               0                2
  STAGE IIIA              0              137
  STAGE IIIB              0               24
  STAGE IIIC              0               57
  STAGE IV                0               15
  STAGE X                 0               12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  ZNF362 MUTATED     3   2   0   0
  ZNF362 WILD-TYPE 254 562 120  35
D35V4, multiclass
    clus
vv   ZNF362 MUTATED ZNF362 WILD-TYPE
  T1              3              254
  T2              2              562
  T3              0              120
  T4              0               35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  ZNF362 MUTATED     5   0   0   0
  ZNF362 WILD-TYPE 457 325 107  68
D35V5, multiclass
    clus
vv   ZNF362 MUTATED ZNF362 WILD-TYPE
  N0              5              457
  N1              0              325
  N2              0              107
  N3              0               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V6, binary
                  cls
clus                 0   1
  ZNF362 MUTATED     5   0
  ZNF362 WILD-TYPE 837  16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF362 MUTATED      5    0
  ZNF362 WILD-TYPE  837   16
   clus
vv  ZNF362 MUTATED ZNF362 WILD-TYPE
  0              5              837
  1              0               16
[1] 2 2
[1] FALSE
D35V7, binary
                  cls
clus                 0   1
  ZNF362 MUTATED     5   0
  ZNF362 WILD-TYPE 963   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF362 MUTATED      5    0
  ZNF362 WILD-TYPE  963    9
        clus
vv       ZNF362 MUTATED ZNF362 WILD-TYPE
  FEMALE              5              963
  MALE                0                9
[1] 2 2
[1] FALSE
D35V8, binary
                  cls
clus                 0   1
  ZNF362 MUTATED     3   2
  ZNF362 WILD-TYPE 384 500
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF362 MUTATED      3    2
  ZNF362 WILD-TYPE  384  500
     clus
vv    ZNF362 MUTATED ZNF362 WILD-TYPE
  NO               3              384
  YES              2              500
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  ZNF362 MUTATED                            0                             5
  ZNF362 WILD-TYPE                          1                           706
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  ZNF362 MUTATED                                0                   0
  ZNF362 WILD-TYPE                            172                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  ZNF362 MUTATED                       0                                0
  ZNF362 WILD-TYPE                     6                               27
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  ZNF362 MUTATED                    0              0
  ZNF362 WILD-TYPE                 14             40
D35V9, multiclass
                                  clus
vv                                 ZNF362 MUTATED ZNF362 WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA                 5              706
  INFILTRATING LOBULAR CARCINOMA                0              172
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)              0               27
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                                0               40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ZNF362 MUTATED                                  0     0
  ZNF362 WILD-TYPE                                1    57
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  ZNF362 MUTATED                           0     4
  ZNF362 WILD-TYPE                       121   701
D35V11, multiclass
                                  clus
vv                                 ZNF362 MUTATED ZNF362 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               57
  BLACK OR AFRICAN AMERICAN                     0              121
  WHITE                                         4              701
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V12, binary
                  cls
clus                 0   1
  ZNF362 MUTATED     0   3
  ZNF362 WILD-TYPE  34 769
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF362 MUTATED      0    3
  ZNF362 WILD-TYPE   34  769
                        clus
vv                       ZNF362 MUTATED ZNF362 WILD-TYPE
  HISPANIC OR LATINO                  0               34
  NOT HISPANIC OR LATINO              3              769
[1] 2 2
[1] FALSE

Clustering(36) Variable = TBL1XR1 MUTATION ANALYSIS
D36V1, survival
                   sevent
clus2                 0   1
  TBL1XR1 MUTATED     5   3
  TBL1XR1 WILD-TYPE 821 135
  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
                8               956 
  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
                3               135 
$`TBL1XR1 MUTATED`
TCGA-A2-A0CS TCGA-A8-A08Z TCGA-B6-A0RN TCGA-BH-A18P TCGA-BH-A18R TCGA-E2-A15G 
       77.19        40.01       263.28        30.28        37.55        18.21 
TCGA-E2-A15P TCGA-E2-A3DX 
       19.56        43.56 

$`TBL1XR1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
      107.93        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       35.47        30.61        37.45        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J 
       31.73        20.19        25.15        29.56        23.74        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA 
       11.34        10.59        10.29        13.41        14.70        14.93 
TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       13.74        14.66        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       12.10        10.72        13.02        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        33.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A092 TCGA-A8-A095 
       31.00         0.99       112.08        43.00        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27       113.62       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.03       102.31        98.27        82.68        70.42        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       23.31        64.83        55.86        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      134.14       125.16       108.36       101.00       103.86        97.68 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT 
       96.00        86.07        93.90        99.32        37.81        41.82 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      104.28       112.77        97.84       105.27       102.84       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
       50.96        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       85.64        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       11.90       275.87       129.57        50.70        65.52       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       52.96        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18Q TCGA-BH-A18S 
       90.84        26.66        72.56        37.74        55.63        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        36.82        36.79        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       10.52       110.60        20.88        18.64        23.51        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        48.53        12.56        12.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       13.51        12.59        12.59        12.92        12.46        12.49 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.95        15.45        16.87        16.70         0.03         9.76 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z 
       24.56        14.43        33.99        12.95        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       17.29        20.71        21.63        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
        9.04        20.58        11.05        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       76.57        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       37.25        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        52.73        34.55 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 
        8.28        30.61        34.92        38.76        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       36.82        34.16        36.20        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ 
       35.77        35.24        25.84        18.94         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 
       28.27        34.95         2.56         6.12         3.02        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE 
       48.23        45.01        32.09        40.24         1.12        46.65 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
        6.58        21.27        46.59        47.64        34.45        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
       42.25        37.74        39.09        38.37        41.03        41.72 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 
       40.73        40.50        20.12         0.69        38.99         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        7.13        24.56        12.33        29.72         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       32.91        30.18        30.44        23.90        23.84        26.70 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
        0.79        25.81        26.40        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV 
       18.21        18.90        13.25        16.57        28.77        25.94 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 
       29.95        29.85        40.41        41.13        39.78        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       23.11        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
        6.15        13.94        10.52        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        17.52 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
        7.40       109.87        59.57       216.76        79.10        83.34 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
      101.62       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       11.57        32.75        17.06        15.32        14.70        14.47 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       27.91        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE 
       64.21        86.96 

  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
            18.21              0.03 
  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
           263.28            282.90 
  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
            38.78             30.61 
[1] "18.2 - 263.3 (38.8)" "0.0 - 282.9 (30.6)" 
[1] "hr=" "1.5"
D36V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  TBL1XR1 MUTATED         1        2        0        0         3         0
  TBL1XR1 WILD-TYPE      87       69        6        4       323       227
                   vv
clus                STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  TBL1XR1 MUTATED           0          0          0          1        1       0
  TBL1XR1 WILD-TYPE         2        137         24         56       14      12
D36V3, multiclass
            clus
vv           TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  STAGE I                  1                87
  STAGE IA                 2                69
  STAGE IB                 0                 6
  STAGE II                 0                 4
  STAGE IIA                3               323
  STAGE IIB                0               227
  STAGE III                0                 2
  STAGE IIIA               0               137
  STAGE IIIB               0                24
  STAGE IIIC               1                56
  STAGE IV                 1                14
  STAGE X                  0                12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                 T1  T2  T3  T4
  TBL1XR1 MUTATED     3   4   0   2
  TBL1XR1 WILD-TYPE 254 560 120  33
D36V4, multiclass
    clus
vv   TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  T1               3               254
  T2               4               560
  T3               0               120
  T4               2                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                 N0  N1  N2  N3
  TBL1XR1 MUTATED     5   1   0   3
  TBL1XR1 WILD-TYPE 457 324 107  65
D36V5, multiclass
    clus
vv   TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  N0               5               457
  N1               1               324
  N2               0               107
  N3               3                65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V6, binary
                   cls
clus                  0   1
  TBL1XR1 MUTATED     8   1
  TBL1XR1 WILD-TYPE 834  15
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TBL1XR1 MUTATED      8    1
  TBL1XR1 WILD-TYPE  834   15
   clus
vv  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  0               8               834
  1               1                15
[1] 2 2
[1] FALSE
D36V7, binary
                   cls
clus                  0   1
  TBL1XR1 MUTATED     9   0
  TBL1XR1 WILD-TYPE 959   9
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TBL1XR1 MUTATED      9    0
  TBL1XR1 WILD-TYPE  959    9
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  FEMALE               9               959
  MALE                 0                 9
[1] 2 2
[1] FALSE
D36V8, binary
                   cls
clus                  0   1
  TBL1XR1 MUTATED     0   5
  TBL1XR1 WILD-TYPE 387 497
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TBL1XR1 MUTATED      0    5
  TBL1XR1 WILD-TYPE  387  497
     clus
vv    TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  NO                0               387
  YES               5               497
[1] 2 2
[1] FALSE
                   vv
clus                INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  TBL1XR1 MUTATED                            0                             7
  TBL1XR1 WILD-TYPE                          1                           704
                   vv
clus                INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  TBL1XR1 MUTATED                                1                   0
  TBL1XR1 WILD-TYPE                            171                   5
                   vv
clus                METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  TBL1XR1 MUTATED                       0                                1
  TBL1XR1 WILD-TYPE                     6                               26
                   vv
clus                MUCINOUS CARCINOMA OTHER, SPECIFY
  TBL1XR1 MUTATED                    0              0
  TBL1XR1 WILD-TYPE                 14             40
D36V9, multiclass
                                  clus
vv                                 TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                     0                 1
  INFILTRATING DUCTAL CARCINOMA                  7               704
  INFILTRATING LOBULAR CARCINOMA                 1               171
  MEDULLARY CARCINOMA                            0                 5
  METAPLASTIC CARCINOMA                          0                 6
  MIXED HISTOLOGY (PLEASE SPECIFY)               1                26
  MUCINOUS CARCINOMA                             0                14
  OTHER, SPECIFY                                 0                40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V10, continuous
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TBL1XR1 MUTATED                                  0     0
  TBL1XR1 WILD-TYPE                                1    57
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  TBL1XR1 MUTATED                           0     7
  TBL1XR1 WILD-TYPE                       121   698
D36V11, multiclass
                                  clus
vv                                 TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          0                57
  BLACK OR AFRICAN AMERICAN                      0               121
  WHITE                                          7               698
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V12, binary
                   cls
clus                  0   1
  TBL1XR1 MUTATED     0   6
  TBL1XR1 WILD-TYPE  34 766
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TBL1XR1 MUTATED      0    6
  TBL1XR1 WILD-TYPE   34  766
                        clus
vv                       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  HISPANIC OR LATINO                   0                34
  NOT HISPANIC OR LATINO               6               766
[1] 2 2
[1] FALSE

Clustering(37) Variable = SP3 MUTATION ANALYSIS
D37V1, survival
               sevent
clus2             0   1
  SP3 MUTATED     3   3
  SP3 WILD-TYPE 823 135
  SP3 MUTATED SP3 WILD-TYPE 
            6           958 
  SP3 MUTATED SP3 WILD-TYPE 
            3           135 
$`SP3 MUTATED`
TCGA-AC-A5XS TCGA-AC-A23H TCGA-B6-A0I9 TCGA-B6-A0IN TCGA-BH-A0HF TCGA-E2-A15P 
       19.33         5.72        11.90        84.59        23.90        19.56 

$`SP3 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       14.53        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       35.47        30.61        37.45        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J 
       31.73        20.19        25.15        29.56        23.74        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA 
       11.34        10.59        10.29        13.41        14.70        14.93 
TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       13.74        14.66        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       12.10        10.72        13.02        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        33.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 
       31.00         0.99       112.08        43.00        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       41.98        12.00         9.99         9.99        12.00        50.04 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       33.07         1.02        25.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        0.99        14.01        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
        0.99        27.02        17.03        38.04        19.23        22.95 
TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
       73.91        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27       113.62       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.03       102.31        98.27        82.68        70.42        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       23.31        64.83        55.86        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      134.14       125.16       108.36       101.00       103.86        97.68 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT 
       96.00        86.07        93.90        99.32        37.81        41.82 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      104.28       112.77        97.84       105.27       102.84       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
       50.96        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       85.64        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
      233.62        18.77       127.33       165.76       129.07       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO 
      255.68        68.45       212.25       234.28       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.28        89.46       282.90       169.51        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.46        18.35        21.01       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.55        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        74.99        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 
       37.74        39.55        39.16        70.22        84.13        51.58 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       51.68        37.22        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        85.87        77.75        49.94        77.95        74.14 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       41.75        46.39        89.06        90.97        81.73        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP 
       67.10        38.01        29.98        13.91        78.28        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        79.00        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        81.83 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        63.32        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       63.39        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO 
       26.50        20.38         5.85         2.37        16.96         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
       13.61        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        36.82        36.79        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       10.52       110.60        20.88        18.64        23.51        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        48.53        12.56        12.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       13.51        12.59        12.59        12.92        12.46        12.49 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.95        15.45        16.87        16.70         0.03         9.76 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z 
       24.56        14.43        33.99        12.95        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15R TCGA-E2-A15S 
       53.92         9.04        20.58        11.05        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       28.50        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW 
       23.84        26.70         0.79        25.81        26.40        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       28.77        25.94        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        29.82        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG 
       18.90        19.99         6.15        13.94        10.52        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA 
       17.49        17.52         7.40       109.87        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
       79.10        83.34        70.85        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      115.69       106.06       101.62       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       69.30        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM 
       62.47        11.84        11.57        32.75        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.70        14.47        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       58.52        31.99        58.62        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       41.92        47.01        64.21        86.96 

  SP3 MUTATED SP3 WILD-TYPE 
         5.72          0.03 
  SP3 MUTATED SP3 WILD-TYPE 
        84.59        282.90 
  SP3 MUTATED SP3 WILD-TYPE 
       19.445        31.000 
[1] "5.7 - 84.6 (19.4)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "6.9"
D37V2, continuous
               vv
clus            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  SP3 MUTATED         0        2        0        0         2         1
  SP3 WILD-TYPE      88       69        6        4       324       226
               vv
clus            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  SP3 MUTATED           0          0          0          0        1       1
  SP3 WILD-TYPE         2        137         24         57       14      11
D37V3, multiclass
            clus
vv           SP3 MUTATED SP3 WILD-TYPE
  STAGE I              0            88
  STAGE IA             2            69
  STAGE IB             0             6
  STAGE II             0             4
  STAGE IIA            2           324
  STAGE IIB            1           226
  STAGE III            0             2
  STAGE IIIA           0           137
  STAGE IIIB           0            24
  STAGE IIIC           0            57
  STAGE IV             1            14
  STAGE X              1            11
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus             T1  T2  T3  T4
  SP3 MUTATED     3   3   1   0
  SP3 WILD-TYPE 254 561 119  35
D37V4, multiclass
    clus
vv   SP3 MUTATED SP3 WILD-TYPE
  T1           3           254
  T2           3           561
  T3           1           119
  T4           0            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus             N0  N1  N2  N3
  SP3 MUTATED     3   1   0   0
  SP3 WILD-TYPE 459 324 107  68
D37V5, multiclass
    clus
vv   SP3 MUTATED SP3 WILD-TYPE
  N0           3           459
  N1           1           324
  N2           0           107
  N3           0            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V6, binary
               cls
clus              0   1
  SP3 MUTATED     4   1
  SP3 WILD-TYPE 838  15
[1] "tbl2"
               cls
clus            [,1] [,2]
  SP3 MUTATED      4    1
  SP3 WILD-TYPE  838   15
   clus
vv  SP3 MUTATED SP3 WILD-TYPE
  0           4           838
  1           1            15
[1] 2 2
[1] FALSE
D37V7, binary
               cls
clus              0   1
  SP3 MUTATED     7   0
  SP3 WILD-TYPE 961   9
[1] "tbl2"
               cls
clus            [,1] [,2]
  SP3 MUTATED      7    0
  SP3 WILD-TYPE  961    9
        clus
vv       SP3 MUTATED SP3 WILD-TYPE
  FEMALE           7           961
  MALE             0             9
[1] 2 2
[1] FALSE
D37V8, binary
               cls
clus              0   1
  SP3 MUTATED     4   3
  SP3 WILD-TYPE 383 499
[1] "tbl2"
               cls
clus            [,1] [,2]
  SP3 MUTATED      4    3
  SP3 WILD-TYPE  383  499
     clus
vv    SP3 MUTATED SP3 WILD-TYPE
  NO            4           383
  YES           3           499
[1] 2 2
[1] FALSE
               vv
clus            INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  SP3 MUTATED                            0                             5
  SP3 WILD-TYPE                          1                           706
               vv
clus            INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  SP3 MUTATED                                1                   0
  SP3 WILD-TYPE                            171                   5
               vv
clus            METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  SP3 MUTATED                       0                                0
  SP3 WILD-TYPE                     6                               27
               vv
clus            MUCINOUS CARCINOMA OTHER, SPECIFY
  SP3 MUTATED                    0              1
  SP3 WILD-TYPE                 14             39
D37V9, multiclass
                                  clus
vv                                 SP3 MUTATED SP3 WILD-TYPE
  INFILTRATING CARCINOMA NOS                 0             1
  INFILTRATING DUCTAL CARCINOMA              5           706
  INFILTRATING LOBULAR CARCINOMA             1           171
  MEDULLARY CARCINOMA                        0             5
  METAPLASTIC CARCINOMA                      0             6
  MIXED HISTOLOGY (PLEASE SPECIFY)           0            27
  MUCINOUS CARCINOMA                         0            14
  OTHER, SPECIFY                             1            39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V10, continuous
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  SP3 MUTATED                                  0     0
  SP3 WILD-TYPE                                1    57
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  SP3 MUTATED                           0     7
  SP3 WILD-TYPE                       121   698
D37V11, multiclass
                                  clus
vv                                 SP3 MUTATED SP3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      0            57
  BLACK OR AFRICAN AMERICAN                  0           121
  WHITE                                      7           698
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V12, binary
               cls
clus              0   1
  SP3 MUTATED     0   6
  SP3 WILD-TYPE  34 766
[1] "tbl2"
               cls
clus            [,1] [,2]
  SP3 MUTATED      0    6
  SP3 WILD-TYPE   34  766
                        clus
vv                       SP3 MUTATED SP3 WILD-TYPE
  HISPANIC OR LATINO               0            34
  NOT HISPANIC OR LATINO           6           766
[1] 2 2
[1] FALSE

Clustering(38) Variable = FGFR2 MUTATION ANALYSIS
D38V1, survival
                 sevent
clus2               0   1
  FGFR2 MUTATED    10   1
  FGFR2 WILD-TYPE 816 137
  FGFR2 MUTATED FGFR2 WILD-TYPE 
             11             953 
  FGFR2 MUTATED FGFR2 WILD-TYPE 
              1             137 
$`FGFR2 MUTATED`
TCGA-A8-A084 TCGA-A8-A09X TCGA-AN-A046 TCGA-AN-A0FL TCGA-D8-A1JA TCGA-D8-A1XL 
       15.06        14.01         0.33         7.59        16.50        19.92 
TCGA-E2-A14W TCGA-E2-A15K TCGA-E9-A1NA TCGA-GI-A2C8 TCGA-PE-A5DE 
       32.02         9.04        36.56         7.40        86.96 

$`FGFR2 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       19.99        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       35.47        30.61        37.45        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J 
       31.73        20.19        25.15        29.56        23.74        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA 
       11.34        10.59        10.29        13.41        14.70        14.93 
TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       13.74        14.66        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       12.10        10.72        13.02        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        33.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 
       31.00         0.99       112.08        43.00        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       41.98        12.00         9.99         9.99        12.00        50.04 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       33.07         1.02        25.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
        0.99        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        5.65         7.96         7.00         7.17         6.90         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        0.33         0.36         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        69.83        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       44.42        32.78        21.40        52.18        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       72.00        76.77        65.10        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      115.27       113.62       108.72       106.78       108.03       102.31 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        82.68        70.42        60.56        53.88        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J 
       20.45        97.08        82.62        11.51        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX 
      130.09        15.62        32.52        84.10        23.31        64.83 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH 
       55.86        65.36       133.22        83.87       134.14       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO 
      108.36       101.00       103.86        97.68        96.00        86.07 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV 
       93.90        99.32        37.81        41.82        94.29        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L 
       86.53        86.43        33.73       160.90        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
      120.33        99.78       118.59         2.76       104.28       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       97.84       105.27       102.84       105.30        50.96        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       98.66        89.00        99.62        93.30        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM 
       93.83       166.42        20.25        86.53        54.21        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       38.17        39.39        40.54        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA 
       77.62       143.38       281.29        32.58        11.90       275.87 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      129.57        50.70        65.52       146.50       112.37       233.62 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
       18.77       127.33        84.59       165.76       129.07       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO 
      255.68        68.45       212.25       234.28       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.28        89.46       282.90       169.51        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.46        18.35        21.01       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.55        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        74.99        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 
       37.74        39.55        39.16        70.22        84.13        51.58 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       51.68        37.22        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        85.87        77.75        49.94        77.95        74.14 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       41.75        46.39        89.06        90.97        81.73        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP 
       67.10        38.01        29.98        13.91        78.28        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        79.00        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        81.83 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        63.32        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       63.39        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       26.50        23.90        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       17.69        25.81        31.53        97.48        25.08       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.83        33.99        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       110.60        20.88        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.49        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       19.20        14.17        17.49        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       21.83        14.50        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       16.31        16.64        12.99        15.16        43.04        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       15.32        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       16.04        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V 
       13.48        17.06         1.61        10.09        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 
       12.26        33.37        18.51        21.67        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       27.52        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.87        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14X TCGA-E2-A14Y 
       33.17        75.98        43.33        34.26        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       18.51        63.62        69.96        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        25.05        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15L 
       21.63        18.21        12.92        55.63        53.92        20.58 
TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ 
       11.05        19.56        56.94        14.07        51.39        76.57 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD 
       53.62        87.22        33.01        32.35        28.50        37.25 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ 
       77.65        37.41        70.36        33.73        33.70        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       59.18         3.88        22.19        60.99        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH 
       60.36        19.66        24.59        75.81        28.90       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX 
      102.61         8.75        43.04        52.73        34.55        43.56 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 
        8.28        30.61        34.92        38.76        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       36.82        34.16        36.20        39.55        41.62        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.24        25.84        18.94         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       34.95         2.56         6.12         3.02        11.15        48.23 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
       45.01        32.09        40.24         1.12        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
       21.27        46.59        47.64        34.45        32.05        42.25 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       37.74        39.09        38.37        41.03        41.72        40.73 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       40.50        20.12         0.69        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       24.56        12.33        29.72         9.47        38.07        32.91 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       30.18        30.44        23.90        23.84        26.70         0.79 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       25.81        26.40        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX 
       18.90        13.25        16.57        28.77        25.94        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 
       29.85        40.41        41.13        39.78        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       18.48        30.08         7.86        18.90        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       13.94        10.52        34.55        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C9 
       25.91        22.09        34.03        17.49        17.52       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 
       18.12         2.60        62.47        11.84        11.57        32.75 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U 
       17.06        15.32        14.70        14.47        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD 
       23.47        65.62        41.92        47.01        64.21 

  FGFR2 MUTATED FGFR2 WILD-TYPE 
           0.33            0.03 
  FGFR2 MUTATED FGFR2 WILD-TYPE 
          86.96          282.90 
  FGFR2 MUTATED FGFR2 WILD-TYPE 
          15.06           31.00 
[1] "0.3 - 87.0 (15.1)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "1.6"
D38V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  FGFR2 MUTATED         0        0        0        0         5         3
  FGFR2 WILD-TYPE      88       71        6        4       321       224
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  FGFR2 MUTATED           0          0          1          1        0       0
  FGFR2 WILD-TYPE         2        137         23         56       15      12
D38V3, multiclass
            clus
vv           FGFR2 MUTATED FGFR2 WILD-TYPE
  STAGE I                0              88
  STAGE IA               0              71
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              5             321
  STAGE IIB              3             224
  STAGE III              0               2
  STAGE IIIA             0             137
  STAGE IIIB             1              23
  STAGE IIIC             1              56
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  FGFR2 MUTATED     0   9   0   2
  FGFR2 WILD-TYPE 257 555 120  33
D38V4, multiclass
    clus
vv   FGFR2 MUTATED FGFR2 WILD-TYPE
  T1             0             257
  T2             9             555
  T3             0             120
  T4             2              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  FGFR2 MUTATED     6   3   0   1
  FGFR2 WILD-TYPE 456 322 107  67
D38V5, multiclass
    clus
vv   FGFR2 MUTATED FGFR2 WILD-TYPE
  N0             6             456
  N1             3             322
  N2             0             107
  N3             1              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V6, binary
                 cls
clus                0   1
  FGFR2 MUTATED     9   0
  FGFR2 WILD-TYPE 833  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGFR2 MUTATED      9    0
  FGFR2 WILD-TYPE  833   16
   clus
vv  FGFR2 MUTATED FGFR2 WILD-TYPE
  0             9             833
  1             0              16
[1] 2 2
[1] FALSE
D38V7, binary
                 cls
clus                0   1
  FGFR2 MUTATED    10   1
  FGFR2 WILD-TYPE 958   8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGFR2 MUTATED     10    1
  FGFR2 WILD-TYPE  958    8
        clus
vv       FGFR2 MUTATED FGFR2 WILD-TYPE
  FEMALE            10             958
  MALE               1               8
[1] 2 2
[1] FALSE
D38V8, binary
                 cls
clus                0   1
  FGFR2 MUTATED     3   7
  FGFR2 WILD-TYPE 384 495
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGFR2 MUTATED      3    7
  FGFR2 WILD-TYPE  384  495
     clus
vv    FGFR2 MUTATED FGFR2 WILD-TYPE
  NO              3             384
  YES             7             495
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  FGFR2 MUTATED                            0                             8
  FGFR2 WILD-TYPE                          1                           703
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  FGFR2 MUTATED                                2                   0
  FGFR2 WILD-TYPE                            170                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  FGFR2 MUTATED                       0                                1
  FGFR2 WILD-TYPE                     6                               26
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  FGFR2 MUTATED                    0              0
  FGFR2 WILD-TYPE                 14             40
D38V9, multiclass
                                  clus
vv                                 FGFR2 MUTATED FGFR2 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA                8             703
  INFILTRATING LOBULAR CARCINOMA               2             170
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             1              26
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               0              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  FGFR2 MUTATED                                  0     0
  FGFR2 WILD-TYPE                                1    57
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  FGFR2 MUTATED                           0     9
  FGFR2 WILD-TYPE                       121   696
D38V11, multiclass
                                  clus
vv                                 FGFR2 MUTATED FGFR2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              57
  BLACK OR AFRICAN AMERICAN                    0             121
  WHITE                                        9             696
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V12, binary
                 cls
clus                0   1
  FGFR2 MUTATED     0   8
  FGFR2 WILD-TYPE  34 764
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGFR2 MUTATED      0    8
  FGFR2 WILD-TYPE   34  764
                        clus
vv                       FGFR2 MUTATED FGFR2 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO             8             764
[1] 2 2
[1] FALSE

Clustering(39) Variable = ZBTB7C MUTATION ANALYSIS
D39V1, survival
                  sevent
clus2                0   1
  ZBTB7C MUTATED     5   0
  ZBTB7C WILD-TYPE 821 138
  ZBTB7C MUTATED ZBTB7C WILD-TYPE 
               5              959 
  ZBTB7C MUTATED ZBTB7C WILD-TYPE 
               0              138 
$`ZBTB7C MUTATED`
TCGA-A2-A0CZ TCGA-AN-A0FW TCGA-D8-A1J8 TCGA-E9-A1N5 TCGA-GM-A3XN 
       53.13         0.36        14.17        36.82        66.38 

$`ZBTB7C WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       56.81        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       35.47        30.61        37.45        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J 
       31.73        20.19        25.15        29.56        23.74        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA 
       11.34        10.59        10.29        13.41        14.70        14.93 
TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       13.74        14.66        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       12.10        10.72        13.02        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        33.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 
       31.00         0.99       112.08        43.00        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       41.98        12.00         9.99         9.99        12.00        50.04 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       33.07         1.02        25.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        0.99        14.01        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
        0.99        27.02        17.03        38.04        19.23        22.95 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
       73.91         5.72        22.26        73.05        99.35        40.57 
TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       86.66        90.71        60.92        87.12        26.04        74.14 
TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN 
       33.04        19.33        14.66        32.45         6.48        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI 
       14.83        22.19        25.05        14.99        15.48        23.24 
TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y 
       24.79        16.80        14.96        17.42         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.23         0.33         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        9.96         7.36         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY 
        7.17         6.90         7.04         0.33         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27       113.62       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.03       102.31        98.27        82.68        70.42        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       23.31        64.83        55.86        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      134.14       125.16       108.36       101.00       103.86        97.68 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT 
       96.00        86.07        93.90        99.32        37.81        41.82 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      104.28       112.77        97.84       105.27       102.84       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
       50.96        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       85.64        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       11.90       275.87       129.57        50.70        65.52       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      263.28       162.05       102.77       140.28        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      169.51        97.48       188.68        79.46        18.35        21.01 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       58.55        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 
       37.87         7.07        85.35        74.99        68.12        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
      103.63        71.15        62.93        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       63.09        81.44        37.74        39.55        39.16        70.22 
TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       84.13        51.58        51.68        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       43.53        61.51        21.70        74.89        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV 
       75.48        74.14        76.60        85.87        77.75        49.94 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 
       77.95        74.14        41.75        46.39        89.06        90.97 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       81.73        77.98        67.10        38.01        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       78.28        15.65         3.22         2.56        79.00        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       70.88        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        81.83        24.49        31.00        63.32        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        63.39        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK 
       41.00        52.96        26.50        23.90        20.38         5.85 
TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
        2.37        16.96         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       51.32        27.25        50.79         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       42.35        44.81        23.05        32.91         4.90        35.93 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
       20.12        90.84        26.66        72.56        37.74        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       55.63        37.55        66.05         7.36        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       69.93        91.99       113.82        82.85        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 
       55.69        49.58        17.69        25.81        31.53        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       25.08       114.15        33.17        74.73       122.83        33.99 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       63.35        55.00        45.63        72.07        53.98        55.50 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       28.14        26.14        38.60        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       36.82        36.79        20.12        10.52       110.60        20.88 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       18.64        23.51        11.93        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       48.53        12.56        12.16        13.51        12.59        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92        12.46        12.49        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
       11.28         0.16        12.03        12.33        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       20.25        12.53        12.36        12.95        15.45        16.87 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
       16.70         0.03         9.76        24.56        14.43        33.99 
TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
       12.95        56.81        20.88        13.25        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       14.17        13.48        19.20        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM 
       15.22        14.73        21.83        14.50        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU 
       55.30        16.41        15.85        16.31        16.64        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       15.16        43.04        16.54        15.32        15.52         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H 
       14.24        14.14        17.42        16.04        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P 
       14.43        48.03        16.41        13.48        17.06         1.61 
TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 
       10.09        13.08        12.53        12.26        33.37        18.51 
TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       21.67        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O 
       37.51        40.11        28.44        28.87        47.15        44.68 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       40.96        38.24        38.60        33.17        75.98        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       34.26        32.02        31.96        69.34        18.51        63.62 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 
       69.96        23.24        19.43        21.04        23.87        25.05 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G 
       23.34        22.82        17.29        20.71        21.63        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        55.63        53.92         9.04        20.58        11.05 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 
       19.56        56.94        14.07        51.39        76.57        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE 
       87.22        33.01        32.35        28.50        37.25        77.65 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.41        70.36        33.73        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
        3.88        22.19        60.99        11.08        54.18        60.36 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI 
       19.66        24.59        75.81        28.90       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
        8.75        43.04        52.73        34.55        43.56         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N8 
       30.61        34.92        38.76        34.82        32.88        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       36.20        36.56        39.55        41.62        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       25.84        18.94         9.86        24.82        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02        11.15        48.23        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       32.09        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       20.12         0.69        38.99         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       12.33        29.72         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       26.40        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        28.77        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        17.52         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       38.20        43.73        69.30        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        58.52        31.99        58.62        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       65.62        41.92        47.01        64.21        86.96 

  ZBTB7C MUTATED ZBTB7C WILD-TYPE 
            0.36             0.03 
  ZBTB7C MUTATED ZBTB7C WILD-TYPE 
           66.38           282.90 
  ZBTB7C MUTATED ZBTB7C WILD-TYPE 
           36.82            30.61 
[1] "0.4 - 66.4 (36.8)"  "0.0 - 282.9 (30.6)"
[1] "hr="     "1200000"
D39V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  ZBTB7C MUTATED         0        0        0        0         1         2
  ZBTB7C WILD-TYPE      88       71        6        4       325       225
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  ZBTB7C MUTATED           0          2          0          0        0       0
  ZBTB7C WILD-TYPE         2        135         24         57       15      12
D39V3, multiclass
            clus
vv           ZBTB7C MUTATED ZBTB7C WILD-TYPE
  STAGE I                 0               88
  STAGE IA                0               71
  STAGE IB                0                6
  STAGE II                0                4
  STAGE IIA               1              325
  STAGE IIB               2              225
  STAGE III               0                2
  STAGE IIIA              2              135
  STAGE IIIB              0               24
  STAGE IIIC              0               57
  STAGE IV                0               15
  STAGE X                 0               12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  ZBTB7C MUTATED     1   4   0   0
  ZBTB7C WILD-TYPE 256 560 120  35
D39V4, multiclass
    clus
vv   ZBTB7C MUTATED ZBTB7C WILD-TYPE
  T1              1              256
  T2              4              560
  T3              0              120
  T4              0               35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  ZBTB7C MUTATED     1   2   2   0
  ZBTB7C WILD-TYPE 461 323 105  68
D39V5, multiclass
    clus
vv   ZBTB7C MUTATED ZBTB7C WILD-TYPE
  N0              1              461
  N1              2              323
  N2              2              105
  N3              0               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V6, binary
                  cls
clus                 0   1
  ZBTB7C MUTATED     5   0
  ZBTB7C WILD-TYPE 837  16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZBTB7C MUTATED      5    0
  ZBTB7C WILD-TYPE  837   16
   clus
vv  ZBTB7C MUTATED ZBTB7C WILD-TYPE
  0              5              837
  1              0               16
[1] 2 2
[1] FALSE
D39V7, binary
                  cls
clus                 0   1
  ZBTB7C MUTATED     5   0
  ZBTB7C WILD-TYPE 963   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZBTB7C MUTATED      5    0
  ZBTB7C WILD-TYPE  963    9
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  FEMALE              5              963
  MALE                0                9
[1] 2 2
[1] FALSE
D39V8, binary
                  cls
clus                 0   1
  ZBTB7C MUTATED     4   1
  ZBTB7C WILD-TYPE 383 501
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZBTB7C MUTATED      4    1
  ZBTB7C WILD-TYPE  383  501
     clus
vv    ZBTB7C MUTATED ZBTB7C WILD-TYPE
  NO               4              383
  YES              1              501
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  ZBTB7C MUTATED                            0                             3
  ZBTB7C WILD-TYPE                          1                           708
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  ZBTB7C MUTATED                                1                   0
  ZBTB7C WILD-TYPE                            171                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  ZBTB7C MUTATED                       0                                1
  ZBTB7C WILD-TYPE                     6                               26
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  ZBTB7C MUTATED                    0              0
  ZBTB7C WILD-TYPE                 14             40
D39V9, multiclass
                                  clus
vv                                 ZBTB7C MUTATED ZBTB7C WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA                 3              708
  INFILTRATING LOBULAR CARCINOMA                1              171
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)              1               26
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                                0               40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ZBTB7C MUTATED                                  0     0
  ZBTB7C WILD-TYPE                                1    57
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  ZBTB7C MUTATED                           0     5
  ZBTB7C WILD-TYPE                       121   700
D39V11, multiclass
                                  clus
vv                                 ZBTB7C MUTATED ZBTB7C WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               57
  BLACK OR AFRICAN AMERICAN                     0              121
  WHITE                                         5              700
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V12, binary
                  cls
clus                 0   1
  ZBTB7C MUTATED     0   5
  ZBTB7C WILD-TYPE  34 767
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZBTB7C MUTATED      0    5
  ZBTB7C WILD-TYPE   34  767
                        clus
vv                       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  HISPANIC OR LATINO                  0               34
  NOT HISPANIC OR LATINO              5              767
[1] 2 2
[1] FALSE

Clustering(40) Variable = NCDN MUTATION ANALYSIS
D40V1, survival
                sevent
clus2              0   1
  NCDN MUTATED     4   0
  NCDN WILD-TYPE 822 138
  NCDN MUTATED NCDN WILD-TYPE 
             4            960 
  NCDN MUTATED NCDN WILD-TYPE 
             0            138 
$`NCDN MUTATED`
TCGA-A2-A0D0 TCGA-A2-A0T5 TCGA-AN-A049 TCGA-D8-A1XV 
       67.33        17.46         0.62        15.16 

$`NCDN WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       56.81        53.13        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.33         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.53         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27       113.62       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
      102.31        98.27        82.68        70.42        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      112.77        97.84       105.27       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       71.05        93.83       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       63.62        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 
       10.59        77.62       143.38       281.29        32.58        11.90 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       52.96        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07        53.98        55.50        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       26.14        38.60        83.31        57.83       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.79        20.12        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
        0.16        12.03        12.33        12.95        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.53        12.36        12.95        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM 
       15.22        14.73        21.83        14.50        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU 
       55.30        16.41        15.85        16.31        16.64        12.99 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       70.36        33.73        33.70        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 
       22.19        60.99        11.08        54.18        60.36        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       24.59        75.81        28.90       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        52.73        34.55        43.56         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        38.76        34.82        32.88        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       36.20        36.56        39.55        41.62        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       25.84        18.94         9.86        24.82        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02        11.15        48.23        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       32.09        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       20.12         0.69        38.99         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       12.33        29.72         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       26.40        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        28.77        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        17.52         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 
       18.12         2.60        62.47        11.84        11.57        32.75 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U 
       17.06        15.32        14.70        14.47        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  NCDN MUTATED NCDN WILD-TYPE 
          0.62           0.03 
  NCDN MUTATED NCDN WILD-TYPE 
         67.33         282.90 
  NCDN MUTATED NCDN WILD-TYPE 
        16.310         30.985 
[1] "0.6 - 67.3 (16.3)"  "0.0 - 282.9 (31.0)"
[1] "hr="     "1200000"
D40V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  NCDN MUTATED         0        0        0        0         4         0
  NCDN WILD-TYPE      88       71        6        4       322       227
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  NCDN MUTATED           0          0          0          0        0       0
  NCDN WILD-TYPE         2        137         24         57       15      12
D40V3, multiclass
            clus
vv           NCDN MUTATED NCDN WILD-TYPE
  STAGE I               0             88
  STAGE IA              0             71
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             4            322
  STAGE IIB             0            227
  STAGE III             0              2
  STAGE IIIA            0            137
  STAGE IIIB            0             24
  STAGE IIIC            0             57
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  NCDN MUTATED     0   4   0   0
  NCDN WILD-TYPE 257 560 120  35
D40V4, multiclass
    clus
vv   NCDN MUTATED NCDN WILD-TYPE
  T1            0            257
  T2            4            560
  T3            0            120
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  NCDN MUTATED     4   0   0   0
  NCDN WILD-TYPE 458 325 107  68
D40V5, multiclass
    clus
vv   NCDN MUTATED NCDN WILD-TYPE
  N0            4            458
  N1            0            325
  N2            0            107
  N3            0             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V6, binary
                cls
clus               0   1
  NCDN MUTATED     4   0
  NCDN WILD-TYPE 838  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  NCDN MUTATED      4    0
  NCDN WILD-TYPE  838   16
   clus
vv  NCDN MUTATED NCDN WILD-TYPE
  0            4            838
  1            0             16
[1] 2 2
[1] FALSE
D40V7, binary
                cls
clus               0   1
  NCDN MUTATED     4   0
  NCDN WILD-TYPE 964   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  NCDN MUTATED      4    0
  NCDN WILD-TYPE  964    9
        clus
vv       NCDN MUTATED NCDN WILD-TYPE
  FEMALE            4            964
  MALE              0              9
[1] 2 2
[1] FALSE
D40V8, binary
                cls
clus               0   1
  NCDN MUTATED     3   0
  NCDN WILD-TYPE 384 502
[1] "tbl2"
                cls
clus             [,1] [,2]
  NCDN MUTATED      3    0
  NCDN WILD-TYPE  384  502
     clus
vv    NCDN MUTATED NCDN WILD-TYPE
  NO             3            384
  YES            0            502
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  NCDN MUTATED                            0                             3
  NCDN WILD-TYPE                          1                           708
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  NCDN MUTATED                                0                   0
  NCDN WILD-TYPE                            172                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  NCDN MUTATED                       0                                0
  NCDN WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  NCDN MUTATED                    1              0
  NCDN WILD-TYPE                 13             40
D40V9, multiclass
                                  clus
vv                                 NCDN MUTATED NCDN WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA               3            708
  INFILTRATING LOBULAR CARCINOMA              0            172
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          1             13
  OTHER, SPECIFY                              0             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NCDN MUTATED                                  0     0
  NCDN WILD-TYPE                                1    57
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  NCDN MUTATED                           1     3
  NCDN WILD-TYPE                       120   702
D40V11, multiclass
                                  clus
vv                                 NCDN MUTATED NCDN WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             57
  BLACK OR AFRICAN AMERICAN                   1            120
  WHITE                                       3            702
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V12, binary
                cls
clus               0   1
  NCDN MUTATED     0   4
  NCDN WILD-TYPE  34 768
[1] "tbl2"
                cls
clus             [,1] [,2]
  NCDN MUTATED      0    4
  NCDN WILD-TYPE   34  768
                        clus
vv                       NCDN MUTATED NCDN WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO            4            768
[1] 2 2
[1] FALSE

Clustering(41) Variable = MUC6 MUTATION ANALYSIS
D41V1, survival
                sevent
clus2              0   1
  MUC6 MUTATED    11   3
  MUC6 WILD-TYPE 815 135
  MUC6 MUTATED MUC6 WILD-TYPE 
            14            950 
  MUC6 MUTATED MUC6 WILD-TYPE 
             3            135 
$`MUC6 MUTATED`
TCGA-A1-A0SK TCGA-A2-A0T5 TCGA-A2-A3Y0 TCGA-A8-A06P TCGA-A8-A07I TCGA-AC-A23H 
       31.79        17.46        50.83        13.02        14.01         5.72 
TCGA-AN-A0FJ TCGA-AO-A03L TCGA-AO-A12E TCGA-BH-A0BP TCGA-BH-A0RX TCGA-E2-A1LB 
        7.96        80.28        70.42        75.48         5.59        75.81 
TCGA-E9-A3QA TCGA-HN-A2NL 
       30.18         2.60 

$`MUC6 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       13.68         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.37         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ 
       25.15        29.56        23.74        20.61        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC 
       10.29        13.41        14.70        14.93        13.74        14.66 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z 
       13.02         1.02        17.98        31.00        26.01         1.02 
TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F 
       17.03        53.98         9.01        43.00        33.99        18.97 
TCGA-A8-A07G TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R 
       18.97        12.00        32.05         9.99        10.98         8.98 
TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 
       24.99         9.99        45.07        18.05        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
        0.99        38.01        28.96        19.96        12.00        37.05 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X 
        9.99        31.00        31.00         0.99       112.08        43.00 
TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A 
       40.01        30.97        41.98        12.00         9.99         9.99 
TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R 
       12.00        50.04        33.07         1.02        25.02         8.98 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       19.04        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD 
       13.02        21.04         0.99        27.02        17.03        38.04 
TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       19.23        22.95        73.91        22.26        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 
       16.31        14.83        22.19        25.05        14.99        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X 
       23.24        24.79        16.80        14.96        17.42         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.23         0.33         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        1.71         9.96         7.36         7.46         0.16         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         0.33         6.44         5.65         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.53         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
        5.59        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27       113.62       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G 
      108.03       102.31        98.27        82.68        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      112.77        97.84       105.27       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       71.05        93.83       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       63.62        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 
       10.59        77.62       143.38       281.29        32.58        11.90 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BQ 
       61.51        21.70        74.89        61.68        72.23        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        85.87        77.75        49.94        77.95        74.14 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       41.75        46.39        89.06        90.97        81.73        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP 
       67.10        38.01        29.98        13.91        78.28        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        79.00        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        81.83 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        63.32        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       63.39        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       26.50        23.90        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
       50.79        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        36.82        36.79        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       10.52       110.60        20.88        18.64        23.51        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        48.53        12.56        12.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       13.51        12.59        12.59        12.92        12.46        12.49 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.95        15.45        16.87        16.70         0.03         9.76 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z 
       24.56        14.43        33.99        12.95        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
        9.47        38.07        32.91        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       19.99         6.15        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.52         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2OB TCGA-JL-A3YW 
       66.38        72.03        13.55        18.12        62.47        11.84 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       11.57        32.75        17.06        15.32        14.70        14.47 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       27.91        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE 
       64.21        86.96 

  MUC6 MUTATED MUC6 WILD-TYPE 
          2.60           0.03 
  MUC6 MUTATED MUC6 WILD-TYPE 
         80.28         282.90 
  MUC6 MUTATED MUC6 WILD-TYPE 
        23.820         30.985 
[1] "2.6 - 80.3 (23.8)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "2.1"
D41V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  MUC6 MUTATED         1        0        0        0         6         3
  MUC6 WILD-TYPE      87       71        6        4       320       224
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  MUC6 MUTATED           0          3          0          0        1       0
  MUC6 WILD-TYPE         2        134         24         57       14      12
D41V3, multiclass
            clus
vv           MUC6 MUTATED MUC6 WILD-TYPE
  STAGE I               1             87
  STAGE IA              0             71
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             6            320
  STAGE IIB             3            224
  STAGE III             0              2
  STAGE IIIA            3            134
  STAGE IIIB            0             24
  STAGE IIIC            0             57
  STAGE IV              1             14
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  MUC6 MUTATED     2  10   2   0
  MUC6 WILD-TYPE 255 554 118  35
D41V4, multiclass
    clus
vv   MUC6 MUTATED MUC6 WILD-TYPE
  T1            2            255
  T2           10            554
  T3            2            118
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  MUC6 MUTATED     7   2   4   0
  MUC6 WILD-TYPE 455 323 103  68
D41V5, multiclass
    clus
vv   MUC6 MUTATED MUC6 WILD-TYPE
  N0            7            455
  N1            2            323
  N2            4            103
  N3            0             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V6, binary
                cls
clus               0   1
  MUC6 MUTATED    13   1
  MUC6 WILD-TYPE 829  15
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC6 MUTATED     13    1
  MUC6 WILD-TYPE  829   15
   clus
vv  MUC6 MUTATED MUC6 WILD-TYPE
  0           13            829
  1            1             15
[1] 2 2
[1] FALSE
D41V7, binary
                cls
clus               0   1
  MUC6 MUTATED    14   0
  MUC6 WILD-TYPE 954   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC6 MUTATED     14    0
  MUC6 WILD-TYPE  954    9
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  FEMALE           14            954
  MALE              0              9
[1] 2 2
[1] FALSE
D41V8, binary
                cls
clus               0   1
  MUC6 MUTATED     5   7
  MUC6 WILD-TYPE 382 495
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC6 MUTATED      5    7
  MUC6 WILD-TYPE  382  495
     clus
vv    MUC6 MUTATED MUC6 WILD-TYPE
  NO             5            382
  YES            7            495
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  MUC6 MUTATED                            0                            10
  MUC6 WILD-TYPE                          1                           701
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  MUC6 MUTATED                                2                   1
  MUC6 WILD-TYPE                            170                   4
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  MUC6 MUTATED                       0                                0
  MUC6 WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  MUC6 MUTATED                    0              1
  MUC6 WILD-TYPE                 14             39
D41V9, multiclass
                                  clus
vv                                 MUC6 MUTATED MUC6 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA              10            701
  INFILTRATING LOBULAR CARCINOMA              2            170
  MEDULLARY CARCINOMA                         1              4
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              1             39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MUC6 MUTATED                                  0     2
  MUC6 WILD-TYPE                                1    55
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  MUC6 MUTATED                           2     7
  MUC6 WILD-TYPE                       119   698
D41V11, multiclass
                                  clus
vv                                 MUC6 MUTATED MUC6 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       2             55
  BLACK OR AFRICAN AMERICAN                   2            119
  WHITE                                       7            698
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V12, binary
                cls
clus               0   1
  MUC6 MUTATED     0  10
  MUC6 WILD-TYPE  34 762
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC6 MUTATED      0   10
  MUC6 WILD-TYPE   34  762
                        clus
vv                       MUC6 MUTATED MUC6 WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO           10            762
[1] 2 2
[1] FALSE

Clustering(42) Variable = TGS1 MUTATION ANALYSIS
D42V1, survival
                sevent
clus2              0   1
  TGS1 MUTATED    10   2
  TGS1 WILD-TYPE 816 136
  TGS1 MUTATED TGS1 WILD-TYPE 
            12            952 
  TGS1 MUTATED TGS1 WILD-TYPE 
             2            136 
$`TGS1 MUTATED`
TCGA-GM-A2DO TCGA-LL-A50Y TCGA-A8-A06Q TCGA-AC-A23H TCGA-AN-A0XN TCGA-AO-A128 
       85.35        25.05         1.02         5.72         0.33       106.78 
TCGA-AR-A0TX TCGA-AR-A5QN TCGA-B6-A2IU TCGA-BH-A0HF TCGA-BH-A1EY TCGA-D8-A1JS 
       64.83        33.30       170.17        23.90        17.69        12.20 

$`TGS1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-LL-A440 TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE 
       24.95        14.79        40.08         8.52        14.37        43.43 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       48.10        14.27        47.24        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        39.32        18.21       143.15        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
      121.94        73.84        87.25       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12        24.79       114.81        92.48       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ 
       75.25         5.19        98.99       107.93        56.81        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       17.52        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       10.72        13.02        13.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        43.00        40.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N 
        9.99         9.99        12.00        50.04        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 
       17.03        38.04        19.23        22.95        73.91        22.26 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
       73.05        99.35        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       87.12        26.04        74.14        33.04        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM 
       32.45         6.48        16.31        14.83        22.19        25.05 
TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU 
       14.99        15.48        23.24        24.79        16.80        14.96 
TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
       17.42         0.33         0.33         0.23         0.33         0.62 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        2.96         1.78         1.71         9.96         7.36         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        0.16         0.33         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        7.96         7.00         7.59         7.17         6.90         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        0.33         0.36         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        5.36        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       81.63        95.70        68.75        69.83        58.95        44.42 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       32.78        21.40        52.18        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       22.36        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        65.10        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
      113.62       108.72       108.03       102.31        98.27        82.68 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       70.42        60.56        53.88        40.57        20.45        97.08 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 
       82.62        11.51        24.79        26.93       130.09        15.62 
TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 
       32.52        84.10        23.31        55.86        65.36       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       134.14       125.16       108.36       101.00       103.86 
TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS 
       97.68        96.00        86.07        93.90        99.32        37.81 
TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       41.82        94.29        61.28        86.53        86.43        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
      160.90        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28       112.77        97.84       105.27       102.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
      105.30        50.96        98.76        98.66        89.00        99.62 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       93.30        85.64        71.05        93.83       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       86.53        54.21        63.62        38.17        39.39        40.54 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       11.90       275.87       129.57        50.70        65.52       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      263.28       162.05       102.77       140.28        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      169.51        97.48       188.68        79.46        18.35        21.01 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A3ZX 
       58.55        43.59       101.52        73.51       139.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       52.96        26.50        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        36.82        36.79        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       10.52       110.60        20.88        18.64        23.51        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        48.53        12.56        12.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       13.51        12.59        12.59        12.92        12.46        12.49 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.95        15.45        16.87        16.70         0.03         9.76 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z 
       24.56        14.43        33.99        12.95        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JT 
       20.12        20.09        19.40        20.38        21.01        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        15.22        14.73        21.83 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       14.50        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       16.31        16.64        12.99        15.16        43.04        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       15.32        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       16.04        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V 
       13.48        17.06         1.61        10.09        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 
       12.26        33.37        18.51        21.67        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       27.52        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.87        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        75.98        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       69.34        18.51        63.62        69.96        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       20.71        21.63        18.21        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        11.05        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       28.50        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW 
       23.84        26.70         0.79        25.81        26.40        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       28.77        25.94        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        29.82        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG 
       18.90        19.99         6.15        13.94        10.52        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA 
       17.49        17.52         7.40       109.87        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
       79.10        83.34        70.85        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      115.69       106.06       101.62       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       69.30        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM 
       62.47        11.84        11.57        32.75        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.70        14.47        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       58.52        31.99        58.62        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       41.92        47.01        64.21        86.96 

  TGS1 MUTATED TGS1 WILD-TYPE 
          0.33           0.03 
  TGS1 MUTATED TGS1 WILD-TYPE 
        170.17         282.90 
  TGS1 MUTATED TGS1 WILD-TYPE 
        24.475         30.985 
[1] "0.3 - 170.2 (24.5)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1"  
D42V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  TGS1 MUTATED         1        2        0        0         6         1
  TGS1 WILD-TYPE      87       69        6        4       320       226
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  TGS1 MUTATED           0          2          0          1        0       0
  TGS1 WILD-TYPE         2        135         24         56       15      12
D42V3, multiclass
            clus
vv           TGS1 MUTATED TGS1 WILD-TYPE
  STAGE I               1             87
  STAGE IA              2             69
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             6            320
  STAGE IIB             1            226
  STAGE III             0              2
  STAGE IIIA            2            135
  STAGE IIIB            0             24
  STAGE IIIC            1             56
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  TGS1 MUTATED     4   7   2   0
  TGS1 WILD-TYPE 253 557 118  35
D42V4, multiclass
    clus
vv   TGS1 MUTATED TGS1 WILD-TYPE
  T1            4            253
  T2            7            557
  T3            2            118
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  TGS1 MUTATED     8   1   2   1
  TGS1 WILD-TYPE 454 324 105  67
D42V5, multiclass
    clus
vv   TGS1 MUTATED TGS1 WILD-TYPE
  N0            8            454
  N1            1            324
  N2            2            105
  N3            1             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V6, binary
                cls
clus               0   1
  TGS1 MUTATED    12   0
  TGS1 WILD-TYPE 830  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  TGS1 MUTATED     12    0
  TGS1 WILD-TYPE  830   16
   clus
vv  TGS1 MUTATED TGS1 WILD-TYPE
  0           12            830
  1            0             16
[1] 2 2
[1] FALSE
D42V7, binary
                cls
clus               0   1
  TGS1 MUTATED    13   0
  TGS1 WILD-TYPE 955   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  TGS1 MUTATED     13    0
  TGS1 WILD-TYPE  955    9
        clus
vv       TGS1 MUTATED TGS1 WILD-TYPE
  FEMALE           13            955
  MALE              0              9
[1] 2 2
[1] FALSE
D42V8, binary
                cls
clus               0   1
  TGS1 MUTATED     5   6
  TGS1 WILD-TYPE 382 496
[1] "tbl2"
                cls
clus             [,1] [,2]
  TGS1 MUTATED      5    6
  TGS1 WILD-TYPE  382  496
     clus
vv    TGS1 MUTATED TGS1 WILD-TYPE
  NO             5            382
  YES            6            496
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  TGS1 MUTATED                            0                             7
  TGS1 WILD-TYPE                          1                           704
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  TGS1 MUTATED                                5                   0
  TGS1 WILD-TYPE                            167                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  TGS1 MUTATED                       0                                0
  TGS1 WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  TGS1 MUTATED                    0              1
  TGS1 WILD-TYPE                 14             39
D42V9, multiclass
                                  clus
vv                                 TGS1 MUTATED TGS1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA               7            704
  INFILTRATING LOBULAR CARCINOMA              5            167
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              1             39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TGS1 MUTATED                                  0     0
  TGS1 WILD-TYPE                                1    57
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  TGS1 MUTATED                           1     9
  TGS1 WILD-TYPE                       120   696
D42V11, multiclass
                                  clus
vv                                 TGS1 MUTATED TGS1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             57
  BLACK OR AFRICAN AMERICAN                   1            120
  WHITE                                       9            696
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V12, binary
                cls
clus               0   1
  TGS1 MUTATED     1   8
  TGS1 WILD-TYPE  33 764
[1] "tbl2"
                cls
clus             [,1] [,2]
  TGS1 MUTATED      1    8
  TGS1 WILD-TYPE   33  764
                        clus
vv                       TGS1 MUTATED TGS1 WILD-TYPE
  HISPANIC OR LATINO                1             33
  NOT HISPANIC OR LATINO            8            764
[1] 2 2
[1] FALSE

Clustering(43) Variable = TFE3 MUTATION ANALYSIS
D43V1, survival
                sevent
clus2              0   1
  TFE3 MUTATED     5   2
  TFE3 WILD-TYPE 821 136
  TFE3 MUTATED TFE3 WILD-TYPE 
             7            957 
  TFE3 MUTATED TFE3 WILD-TYPE 
             2            136 
$`TFE3 MUTATED`
TCGA-AR-A1AR TCGA-A8-A097 TCGA-A8-A0A6 TCGA-AN-A04C TCGA-AO-A128 TCGA-AR-A0TY 
       17.23        12.00        21.04         1.78       106.78        55.86 
TCGA-BH-A0HA 
       52.96 

$`TFE3 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
        2.56        32.91        98.33        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       35.47        30.61        37.45        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J 
       31.73        20.19        25.15        29.56        23.74        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA 
       11.34        10.59        10.29        13.41        14.70        14.93 
TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       13.74        14.66        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       12.10        10.72        13.02        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        33.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 
       31.00         0.99       112.08        43.00        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       41.98         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 
       14.01        12.00        19.04        13.02         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       17.03        38.04        19.23        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH 
       25.05        14.99        15.48        23.24        24.79        16.80 
TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 
       14.96        17.42         0.33         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        0.62         2.96         1.71         9.96         7.36         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        0.16         0.33         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        7.96         7.00         7.59         7.17         6.90         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        0.33         0.36         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        69.83        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       44.42        32.78        21.40        52.18        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       72.00        76.77        65.10        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
      115.27       113.62       108.72       108.03       102.31        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       97.08        82.62        11.51        24.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0U0 
       15.62        32.52        84.10        23.31        64.83        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      133.22        83.87       134.14       125.16       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
      103.86        97.68        96.00        86.07        93.90        99.32 
TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       37.81        41.82        94.29        61.28        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       33.73       160.90        50.89        94.22       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
      118.59         2.76       104.28       112.77        97.84       105.27 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
      102.84       105.30        50.96        98.76        98.66        89.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       99.62        93.30        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       40.54        33.30        38.96        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      281.29        32.58        11.90       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.52       146.50       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28       263.28       162.05       102.77       140.28 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       282.90       169.51        97.48       188.68        79.46 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.01       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.55        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       68.12        18.84       103.63        71.15        62.93        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 
       20.45        25.55        63.09        81.44        37.74        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.16        70.22        84.13        51.58        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        72.23        75.48        74.14        76.60        85.87 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       77.75        49.94        77.95        74.14        41.75        46.39 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        81.73        77.98        67.10        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       29.98        13.91        78.28        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       79.00        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30         9.63        44.81        81.83        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       63.32        30.35        10.78        15.16        63.39        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI 
       24.56        23.08        41.00        26.50        23.90        20.38 
TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
        5.85         2.37        16.96         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
       12.89        51.32        27.25        50.79         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05        32.91         4.90 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
       35.93        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       30.28        55.63        37.55        66.05         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.16        69.93        91.99       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       12.00        55.69        49.58        17.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48        25.08       114.15        33.17        74.73       122.83 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
       33.99        63.35        55.00        45.63        72.07        53.98 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       55.50        28.14        26.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        36.82        36.79        20.12        10.52       110.60 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
       20.88        18.64        23.51        11.93        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
       12.66        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 
       12.66        48.53        12.56        12.16        13.51        12.59 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
       12.59        12.92        12.46        12.49        12.33        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN 
       11.34        11.28         0.16        12.03        12.33        12.95 
TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z 
       12.33        20.25        12.53        12.36        12.95        15.45 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B 
       16.87        16.70         0.03         9.76        24.56        14.43 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 
       33.99        12.95        56.81        20.88        13.25        20.58 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 
       13.97        14.17        13.48        19.20        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF 
       16.50        55.50        15.78        18.15        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL 
       53.00        14.01        18.97        20.09        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       19.40        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA 
       18.58        17.79        16.73        25.74        23.90        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK 
       18.15        12.39        15.22        14.73        21.83        14.50 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       19.92        17.69        55.30        16.41        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.64        12.99        15.16        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       15.52         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43        48.03        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
       17.06         1.61        10.09        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       33.37        18.51        21.67        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       46.59        40.41        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       47.15        44.68        40.96        38.24        38.60        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       75.98        43.33        34.26        32.02        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       18.51        63.62        69.96        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        25.05        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       20.58        11.05        19.56        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       76.57        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       37.25        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        52.73        34.55 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 
       43.56         8.28        30.61        34.92        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        34.16        36.20        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       41.62        35.77        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       19.99         6.15        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.52         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.84        11.57        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       47.01        64.21        86.96 

  TFE3 MUTATED TFE3 WILD-TYPE 
          1.78           0.03 
  TFE3 MUTATED TFE3 WILD-TYPE 
        106.78         282.90 
  TFE3 MUTATED TFE3 WILD-TYPE 
         21.04          30.97 
[1] "1.8 - 106.8 (21.0)" "0.0 - 282.9 (31.0)"
[1] "hr=" "2.4"
D43V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  TFE3 MUTATED         1        0        0        0         2         2
  TFE3 WILD-TYPE      87       71        6        4       324       225
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  TFE3 MUTATED           0          1          0          1        0       0
  TFE3 WILD-TYPE         2        136         24         56       15      12
D43V3, multiclass
            clus
vv           TFE3 MUTATED TFE3 WILD-TYPE
  STAGE I               1             87
  STAGE IA              0             71
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             2            324
  STAGE IIB             2            225
  STAGE III             0              2
  STAGE IIIA            1            136
  STAGE IIIB            0             24
  STAGE IIIC            1             56
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  TFE3 MUTATED     2   5   0   0
  TFE3 WILD-TYPE 255 559 120  35
D43V4, multiclass
    clus
vv   TFE3 MUTATED TFE3 WILD-TYPE
  T1            2            255
  T2            5            559
  T3            0            120
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  TFE3 MUTATED     3   2   1   1
  TFE3 WILD-TYPE 459 323 106  67
D43V5, multiclass
    clus
vv   TFE3 MUTATED TFE3 WILD-TYPE
  N0            3            459
  N1            2            323
  N2            1            106
  N3            1             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V6, binary
                cls
clus               0   1
  TFE3 MUTATED     7   0
  TFE3 WILD-TYPE 835  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  TFE3 MUTATED      7    0
  TFE3 WILD-TYPE  835   16
   clus
vv  TFE3 MUTATED TFE3 WILD-TYPE
  0            7            835
  1            0             16
[1] 2 2
[1] FALSE
D43V7, binary
                cls
clus               0   1
  TFE3 MUTATED     7   0
  TFE3 WILD-TYPE 961   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  TFE3 MUTATED      7    0
  TFE3 WILD-TYPE  961    9
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  FEMALE            7            961
  MALE              0              9
[1] 2 2
[1] FALSE
D43V8, binary
                cls
clus               0   1
  TFE3 MUTATED     2   4
  TFE3 WILD-TYPE 385 498
[1] "tbl2"
                cls
clus             [,1] [,2]
  TFE3 MUTATED      2    4
  TFE3 WILD-TYPE  385  498
     clus
vv    TFE3 MUTATED TFE3 WILD-TYPE
  NO             2            385
  YES            4            498
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  TFE3 MUTATED                            0                             6
  TFE3 WILD-TYPE                          1                           705
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  TFE3 MUTATED                                1                   0
  TFE3 WILD-TYPE                            171                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  TFE3 MUTATED                       0                                0
  TFE3 WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  TFE3 MUTATED                    0              0
  TFE3 WILD-TYPE                 14             40
D43V9, multiclass
                                  clus
vv                                 TFE3 MUTATED TFE3 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA               6            705
  INFILTRATING LOBULAR CARCINOMA              1            171
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              0             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TFE3 MUTATED                                  0     0
  TFE3 WILD-TYPE                                1    57
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  TFE3 MUTATED                           0     5
  TFE3 WILD-TYPE                       121   700
D43V11, multiclass
                                  clus
vv                                 TFE3 MUTATED TFE3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             57
  BLACK OR AFRICAN AMERICAN                   0            121
  WHITE                                       5            700
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V12, binary
                cls
clus               0   1
  TFE3 MUTATED     0   5
  TFE3 WILD-TYPE  34 767
[1] "tbl2"
                cls
clus             [,1] [,2]
  TFE3 MUTATED      0    5
  TFE3 WILD-TYPE   34  767
                        clus
vv                       TFE3 MUTATED TFE3 WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO            5            767
[1] 2 2
[1] FALSE

Clustering(44) Variable = IRS4 MUTATION ANALYSIS
D44V1, survival
                sevent
clus2              0   1
  IRS4 MUTATED    10   1
  IRS4 WILD-TYPE 816 137
  IRS4 MUTATED IRS4 WILD-TYPE 
            11            953 
  IRS4 MUTATED IRS4 WILD-TYPE 
             1            137 
$`IRS4 MUTATED`
TCGA-BH-A0B6 TCGA-A1-A0SH TCGA-A2-A0T2 TCGA-A8-A0A6 TCGA-AN-A04C TCGA-AO-A03M 
       81.63        47.24         8.38        21.04         1.78        61.35 
TCGA-BH-A0HK TCGA-C8-A1HO TCGA-D8-A140 TCGA-D8-A1XK TCGA-E9-A1NC 
        5.85        12.33        13.25        14.50        39.55 

$`IRS4 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       73.35        24.62        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       43.43        48.10        14.27        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        39.32        18.21       143.15        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
      121.94        73.84        87.25       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12        24.79       114.81        92.48       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ 
       75.25         5.19        98.99       107.93        56.81        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.52        17.13        49.84        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       19.20        16.47        52.47        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT 
      105.34        10.59        36.23        39.65        33.93        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.83         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ 
       25.15        29.56        23.74        20.61        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC 
       10.29        13.41        14.70        14.93        13.74        14.66 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       13.02        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        43.00        40.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N 
        9.99         9.99        12.00        50.04        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       12.00        19.04        13.02         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       38.04        19.23        22.95        73.91         5.72        22.26 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
       73.05        99.35        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       87.12        26.04        74.14        33.04        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM 
       32.45         6.48        16.31        14.83        22.19        25.05 
TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU 
       14.99        15.48        23.24        24.79        16.80        14.96 
TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
       17.42         0.33         0.33         0.23         0.33         0.62 
TCGA-AN-A04A TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        2.96         1.71         9.96         7.36         7.46         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.33         0.33         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV 
        7.00         7.59         7.17         6.90         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL 
        0.36         0.33         0.33         0.33         0.53         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N TCGA-AO-A03O 
        0.33         5.33         5.59        80.28        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       95.70        68.75        69.83        58.95        44.42        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 
       21.40        52.18        26.04        37.48        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE 
       53.03        21.53        50.70        50.86        72.00        76.77 
TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 
       65.10        62.04        55.33        71.80       115.27       113.62 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
      108.72       106.78       108.03       102.31        98.27        82.68 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       70.42        60.56        53.88        40.57        20.45        97.08 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 
       82.62        11.51        24.79        26.93       130.09        15.62 
TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 
       32.52        84.10        23.31        64.83        55.86        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      133.22        83.87       134.14       125.16       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
      103.86        97.68        96.00        86.07        93.90        99.32 
TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       37.81        41.82        94.29        61.28        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       33.73       160.90        50.89        94.22       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
      118.59         2.76       104.28       112.77        97.84       105.27 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
      102.84       105.30        50.96        98.76        98.66        89.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       99.62        93.30        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       40.54        33.30        38.96        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      281.29        32.58        11.90       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.52       146.50       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28       263.28       162.05       102.77       140.28 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       282.90       169.51        97.48       188.68        79.46 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.01       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.55        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       68.12        18.84       103.63        71.15        62.93        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 
       20.45        25.55        63.09        81.44        37.74        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.16        70.22        84.13        51.58        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        72.23        75.48        74.14        76.60        85.87 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       77.75        49.94        77.95        74.14        41.75        46.39 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        81.73        77.98        67.10        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       29.98        13.91        78.28        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       79.00        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30         9.63        44.81        81.83        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       63.32        30.35        10.78        15.16        63.39        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF 
       24.56        23.08        41.00        52.96        26.50        23.90 
TCGA-BH-A0HI TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
       20.38         2.37        16.96         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
       12.89        51.32        27.25        50.79         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05        32.91         4.90 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
       35.93        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       30.28        55.63        37.55        66.05         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.16        69.93        91.99       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       12.00        55.69        49.58        17.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48        25.08       114.15        33.17        74.73       122.83 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
       33.99        63.35        55.00        45.63        72.07        53.98 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       55.50        28.14        26.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        36.82        36.79        20.12        10.52       110.60 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
       20.88        18.64        23.51        11.93        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
       12.66        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 
       12.66        48.53        12.56        12.16        13.51        12.59 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
       12.59        12.92        12.46        12.49        12.33        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN 
       11.34        11.28         0.16        12.03        12.33        12.95 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       20.25        12.53        12.36        12.95        15.45        16.87 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
       16.70         0.03         9.76        24.56        14.43        33.99 
TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       12.95        56.81        20.88        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       15.22        14.73        21.83        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       70.36        33.73        33.70        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 
       22.19        60.99        11.08        54.18        60.36        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       24.59        75.81        28.90       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        52.73        34.55        43.56         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        38.76        34.82        32.88        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.20        36.56        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02        11.15        48.23        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       40.24         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       115.69       106.06       101.62       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        58.52        31.99        58.62        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       65.62        41.92        47.01        64.21        86.96 

  IRS4 MUTATED IRS4 WILD-TYPE 
          1.78           0.03 
  IRS4 MUTATED IRS4 WILD-TYPE 
         81.63         282.90 
  IRS4 MUTATED IRS4 WILD-TYPE 
          14.5           31.0 
[1] "1.8 - 81.6 (14.5)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "1.2"
D44V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  IRS4 MUTATED         2        0        0        0         1         5
  IRS4 WILD-TYPE      86       71        6        4       325       222
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  IRS4 MUTATED           0          0          0          2        1       0
  IRS4 WILD-TYPE         2        137         24         55       14      12
D44V3, multiclass
            clus
vv           IRS4 MUTATED IRS4 WILD-TYPE
  STAGE I               2             86
  STAGE IA              0             71
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             1            325
  STAGE IIB             5            222
  STAGE III             0              2
  STAGE IIIA            0            137
  STAGE IIIB            0             24
  STAGE IIIC            2             55
  STAGE IV              1             14
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  IRS4 MUTATED     2   7   2   0
  IRS4 WILD-TYPE 255 557 118  35
D44V4, multiclass
    clus
vv   IRS4 MUTATED IRS4 WILD-TYPE
  T1            2            255
  T2            7            557
  T3            2            118
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  IRS4 MUTATED     3   5   0   3
  IRS4 WILD-TYPE 459 320 107  65
D44V5, multiclass
    clus
vv   IRS4 MUTATED IRS4 WILD-TYPE
  N0            3            459
  N1            5            320
  N2            0            107
  N3            3             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V6, binary
                cls
clus               0   1
  IRS4 MUTATED     9   1
  IRS4 WILD-TYPE 833  15
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRS4 MUTATED      9    1
  IRS4 WILD-TYPE  833   15
   clus
vv  IRS4 MUTATED IRS4 WILD-TYPE
  0            9            833
  1            1             15
[1] 2 2
[1] FALSE
D44V7, binary
                cls
clus               0   1
  IRS4 MUTATED    11   0
  IRS4 WILD-TYPE 957   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRS4 MUTATED     11    0
  IRS4 WILD-TYPE  957    9
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  FEMALE           11            957
  MALE              0              9
[1] 2 2
[1] FALSE
D44V8, binary
                cls
clus               0   1
  IRS4 MUTATED     6   3
  IRS4 WILD-TYPE 381 499
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRS4 MUTATED      6    3
  IRS4 WILD-TYPE  381  499
     clus
vv    IRS4 MUTATED IRS4 WILD-TYPE
  NO             6            381
  YES            3            499
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  IRS4 MUTATED                            0                             9
  IRS4 WILD-TYPE                          1                           702
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  IRS4 MUTATED                                1                   0
  IRS4 WILD-TYPE                            171                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  IRS4 MUTATED                       0                                1
  IRS4 WILD-TYPE                     6                               26
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  IRS4 MUTATED                    0              0
  IRS4 WILD-TYPE                 14             40
D44V9, multiclass
                                  clus
vv                                 IRS4 MUTATED IRS4 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA               9            702
  INFILTRATING LOBULAR CARCINOMA              1            171
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            1             26
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              0             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  IRS4 MUTATED                                  0     1
  IRS4 WILD-TYPE                                1    56
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  IRS4 MUTATED                           0     9
  IRS4 WILD-TYPE                       121   696
D44V11, multiclass
                                  clus
vv                                 IRS4 MUTATED IRS4 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       1             56
  BLACK OR AFRICAN AMERICAN                   0            121
  WHITE                                       9            696
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V12, binary
                cls
clus               0   1
  IRS4 MUTATED     0   9
  IRS4 WILD-TYPE  34 763
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRS4 MUTATED      0    9
  IRS4 WILD-TYPE   34  763
                        clus
vv                       IRS4 MUTATED IRS4 WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO            9            763
[1] 2 2
[1] FALSE

Clustering(45) Variable = NLGN3 MUTATION ANALYSIS
D45V1, survival
                 sevent
clus2               0   1
  NLGN3 MUTATED     9   1
  NLGN3 WILD-TYPE 817 137
  NLGN3 MUTATED NLGN3 WILD-TYPE 
             10             954 
  NLGN3 MUTATED NLGN3 WILD-TYPE 
              1             137 
$`NLGN3 MUTATED`
TCGA-A8-A093 TCGA-A2-A4RY TCGA-AN-A0AK TCGA-B6-A0IC TCGA-BH-A0BZ TCGA-BH-A0HA 
       17.95        21.30         7.36        50.70        74.14        52.96 
TCGA-BH-A18G TCGA-C8-A12W TCGA-C8-A26Y TCGA-EW-A1P6 
        4.90        12.66        12.95        18.48 

$`NLGN3 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A09C 
       19.99        15.06        33.01        33.01        33.01         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4S0 
       35.93        50.37        50.83         7.30        24.39        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.53         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27       113.62       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
      102.31        98.27        82.68        70.42        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      112.77        97.84       105.27       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       71.05        93.83       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       63.62        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 
       10.59        77.62       143.38       281.29        32.58        11.90 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      275.87       129.57        65.52       146.50       112.37       233.62 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
       18.77       127.33        84.59       165.76       129.07       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO 
      255.68        68.45       212.25       234.28       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.28        89.46       282.90       169.51        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.46        18.35        21.01       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.55        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        74.99        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 
       37.74        39.55        39.16        70.22        84.13        51.58 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       51.68        37.22        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0C0 
       76.60        85.87        77.75        49.94        77.95        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       46.39        89.06        90.97        81.73        77.98        67.10 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ 
       38.01        29.98        13.91        78.28        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        79.00        67.86        70.88        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB 
       15.68        14.30         9.63        44.81        81.83        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        63.32        30.35        10.78        15.16        63.39 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HF 
       53.26        24.56        23.08        41.00        26.50        23.90 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP 
       20.38         5.85         2.37        16.96         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       36.85        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
       35.93        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       30.28        55.63        37.55        66.05         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.16        69.93        91.99       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       12.00        55.69        49.58        17.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48        25.08       114.15        33.17        74.73       122.83 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
       33.99        63.35        55.00        45.63        72.07        53.98 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       55.50        28.14        26.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        36.82        36.79        20.12        10.52       110.60 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
       20.88        18.64        23.51        11.93        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12X 
       12.66        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       48.53        12.56        12.16        13.51        12.59        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92        12.46        12.49        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
       11.28         0.16        12.03        12.33        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       20.25        12.53        12.36        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM 
       15.22        14.73        21.83        14.50        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU 
       55.30        16.41        15.85        16.31        16.64        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       15.16        43.04        16.54        15.32        15.52         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H 
       14.24        14.14        17.42        16.04        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P 
       14.43        48.03        16.41        13.48        17.06         1.61 
TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 
       10.09        13.08        12.53        12.26        33.37        18.51 
TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       21.67        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O 
       37.51        40.11        28.44        28.87        47.15        44.68 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       40.96        38.24        38.60        33.17        75.98        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       34.26        32.02        31.96        69.34        18.51        63.62 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 
       69.96        23.24        19.43        21.04        23.87        25.05 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G 
       23.34        22.82        17.29        20.71        21.63        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        55.63        53.92         9.04        20.58        11.05 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 
       19.56        56.94        14.07        51.39        76.57        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE 
       87.22        33.01        32.35        28.50        37.25        77.65 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.41        70.36        33.73        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
        3.88        22.19        60.99        11.08        54.18        60.36 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI 
       19.66        24.59        75.81        28.90       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
        8.75        43.04        52.73        34.55        43.56         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       30.61        34.92        38.76        34.82        32.88        36.82 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       34.16        36.20        36.56        39.55        41.62        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.24        25.84        18.94         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       34.95         2.56         6.12         3.02        11.15        48.23 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
       45.01        32.09        40.24         1.12        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
       21.27        46.59        47.64        34.45        32.05        42.25 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       37.74        39.09        38.37        41.03        41.72        40.73 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       40.50        20.12         0.69        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       24.56        12.33        29.72         9.47        38.07        32.91 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       30.18        30.44        23.90        23.84        26.70         0.79 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       25.81        26.40        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX 
       18.90        13.25        16.57        28.77        25.94        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 
       29.85        40.41        41.13        39.78        29.82        23.11 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        17.52         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 
       18.12         2.60        62.47        11.84        11.57        32.75 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U 
       17.06        15.32        14.70        14.47        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  NLGN3 MUTATED NLGN3 WILD-TYPE 
           4.90            0.03 
  NLGN3 MUTATED NLGN3 WILD-TYPE 
          74.14          282.90 
  NLGN3 MUTATED NLGN3 WILD-TYPE 
         18.215          31.000 
[1] "4.9 - 74.1 (18.2)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "1.4"
D45V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  NLGN3 MUTATED         1        1        0        0         3         2
  NLGN3 WILD-TYPE      87       70        6        4       323       225
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  NLGN3 MUTATED           0          1          1          1        0       1
  NLGN3 WILD-TYPE         2        136         23         56       15      11
D45V3, multiclass
            clus
vv           NLGN3 MUTATED NLGN3 WILD-TYPE
  STAGE I                1              87
  STAGE IA               1              70
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              3             323
  STAGE IIB              2             225
  STAGE III              0               2
  STAGE IIIA             1             136
  STAGE IIIB             1              23
  STAGE IIIC             1              56
  STAGE IV               0              15
  STAGE X                1              11
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  NLGN3 MUTATED     2   5   3   1
  NLGN3 WILD-TYPE 255 559 117  34
D45V4, multiclass
    clus
vv   NLGN3 MUTATED NLGN3 WILD-TYPE
  T1             2             255
  T2             5             559
  T3             3             117
  T4             1              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  NLGN3 MUTATED     6   3   0   1
  NLGN3 WILD-TYPE 456 322 107  67
D45V5, multiclass
    clus
vv   NLGN3 MUTATED NLGN3 WILD-TYPE
  N0             6             456
  N1             3             322
  N2             0             107
  N3             1              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V6, binary
                 cls
clus                0   1
  NLGN3 MUTATED    10   0
  NLGN3 WILD-TYPE 832  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLGN3 MUTATED     10    0
  NLGN3 WILD-TYPE  832   16
   clus
vv  NLGN3 MUTATED NLGN3 WILD-TYPE
  0            10             832
  1             0              16
[1] 2 2
[1] FALSE
D45V7, binary
                 cls
clus                0   1
  NLGN3 MUTATED    11   0
  NLGN3 WILD-TYPE 957   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLGN3 MUTATED     11    0
  NLGN3 WILD-TYPE  957    9
        clus
vv       NLGN3 MUTATED NLGN3 WILD-TYPE
  FEMALE            11             957
  MALE               0               9
[1] 2 2
[1] FALSE
D45V8, binary
                 cls
clus                0   1
  NLGN3 MUTATED     5   5
  NLGN3 WILD-TYPE 382 497
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLGN3 MUTATED      5    5
  NLGN3 WILD-TYPE  382  497
     clus
vv    NLGN3 MUTATED NLGN3 WILD-TYPE
  NO              5             382
  YES             5             497
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  NLGN3 MUTATED                            0                             8
  NLGN3 WILD-TYPE                          1                           703
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  NLGN3 MUTATED                                2                   0
  NLGN3 WILD-TYPE                            170                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  NLGN3 MUTATED                       0                                0
  NLGN3 WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  NLGN3 MUTATED                    0              1
  NLGN3 WILD-TYPE                 14             39
D45V9, multiclass
                                  clus
vv                                 NLGN3 MUTATED NLGN3 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA                8             703
  INFILTRATING LOBULAR CARCINOMA               2             170
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               1              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  NLGN3 MUTATED                                  0     2
  NLGN3 WILD-TYPE                                1    55
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  NLGN3 MUTATED                           0     7
  NLGN3 WILD-TYPE                       121   698
D45V11, multiclass
                                  clus
vv                                 NLGN3 MUTATED NLGN3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        2              55
  BLACK OR AFRICAN AMERICAN                    0             121
  WHITE                                        7             698
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V12, binary
                 cls
clus                0   1
  NLGN3 MUTATED     1   8
  NLGN3 WILD-TYPE  33 764
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLGN3 MUTATED      1    8
  NLGN3 WILD-TYPE   33  764
                        clus
vv                       NLGN3 MUTATED NLGN3 WILD-TYPE
  HISPANIC OR LATINO                 1              33
  NOT HISPANIC OR LATINO             8             764
[1] 2 2
[1] FALSE

Clustering(46) Variable = IL1RAP MUTATION ANALYSIS
D46V1, survival
                  sevent
clus2                0   1
  IL1RAP MUTATED     8   1
  IL1RAP WILD-TYPE 818 137
  IL1RAP MUTATED IL1RAP WILD-TYPE 
               9              955 
  IL1RAP MUTATED IL1RAP WILD-TYPE 
               1              137 
$`IL1RAP MUTATED`
TCGA-EW-A1J5 TCGA-A2-A0CX TCGA-AN-A046 TCGA-D8-A1JK TCGA-D8-A1JP TCGA-D8-A1XK 
       15.68        56.81         0.33        20.12        21.01        14.50 
TCGA-D8-A1XW TCGA-D8-A1Y1 TCGA-D8-A27G 
       43.04         9.93        13.45 

$`IL1RAP WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       73.64        50.07        26.99        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CZ 
       77.19        75.25         5.19        98.99       107.93        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       17.52        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.53         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27       113.62       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
      102.31        98.27        82.68        70.42        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      112.77        97.84       105.27       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       71.05        93.83       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       63.62        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 
       10.59        77.62       143.38       281.29        32.58        11.90 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       52.96        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07        53.98        55.50        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       26.14        38.60        83.31        57.83       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.79        20.12        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
        0.16        12.03        12.33        12.95        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.53        12.36        12.95        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JS 
       18.97        20.09        20.09        19.40        20.38        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       21.83        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.31        16.64        12.99        15.16        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H 
       15.52        14.24        14.14        17.42        16.04        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P 
       14.43        48.03        16.41        13.48        17.06         1.61 
TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 
       10.09        13.08        12.53        12.26        33.37        18.51 
TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       21.67        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O 
       37.51        40.11        28.44        28.87        47.15        44.68 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       40.96        38.24        38.60        33.17        75.98        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       34.26        32.02        31.96        69.34        18.51        63.62 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 
       69.96        23.24        19.43        21.04        23.87        25.05 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G 
       23.34        22.82        17.29        20.71        21.63        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        55.63        53.92         9.04        20.58        11.05 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 
       19.56        56.94        14.07        51.39        76.57        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE 
       87.22        33.01        32.35        28.50        37.25        77.65 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.41        70.36        33.73        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
        3.88        22.19        60.99        11.08        54.18        60.36 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI 
       19.66        24.59        75.81        28.90       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
        8.75        43.04        52.73        34.55        43.56         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       30.61        34.92        38.76        34.82        32.88        36.82 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       34.16        36.20        36.56        39.55        41.62        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.24        25.84        18.94         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       34.95         2.56         6.12         3.02        11.15        48.23 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
       45.01        32.09        40.24         1.12        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
       21.27        46.59        47.64        34.45        32.05        42.25 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       37.74        39.09        38.37        41.03        41.72        40.73 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       40.50        20.12         0.69        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       24.56        12.33        29.72         9.47        38.07        32.91 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       30.18        30.44        23.90        23.84        26.70         0.79 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       25.81        26.40        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX 
       18.90        13.25        16.57        28.77        25.94        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 
       29.85        40.41        41.13        39.78        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       18.48        30.08         7.86        18.90        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       13.94        10.52        34.55        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 
       25.91        22.09        34.03        17.49        17.52         7.40 
TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF 
      109.87        59.57       216.76        79.10        83.34        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      110.50        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       13.55        18.12         2.60        62.47        11.84        11.57 
TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 
       32.75        17.06        15.32        14.70        14.47        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       22.39         2.10        36.30        58.52        31.99        58.62 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 
       34.92        36.36        28.87        24.72        22.32        20.38 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD 
       26.70        23.47        65.62        41.92        47.01        64.21 
TCGA-PE-A5DE 
       86.96 

  IL1RAP MUTATED IL1RAP WILD-TYPE 
            0.33             0.03 
  IL1RAP MUTATED IL1RAP WILD-TYPE 
           56.81           282.90 
  IL1RAP MUTATED IL1RAP WILD-TYPE 
           15.68            31.00 
[1] "0.3 - 56.8 (15.7)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "2.2"
D46V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  IL1RAP MUTATED         0        1        0        0         5         2
  IL1RAP WILD-TYPE      88       70        6        4       321       225
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  IL1RAP MUTATED           0          1          0          0        0       0
  IL1RAP WILD-TYPE         2        136         24         57       15      12
D46V3, multiclass
            clus
vv           IL1RAP MUTATED IL1RAP WILD-TYPE
  STAGE I                 0               88
  STAGE IA                1               70
  STAGE IB                0                6
  STAGE II                0                4
  STAGE IIA               5              321
  STAGE IIB               2              225
  STAGE III               0                2
  STAGE IIIA              1              136
  STAGE IIIB              0               24
  STAGE IIIC              0               57
  STAGE IV                0               15
  STAGE X                 0               12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  IL1RAP MUTATED     1   6   2   0
  IL1RAP WILD-TYPE 256 558 118  35
D46V4, multiclass
    clus
vv   IL1RAP MUTATED IL1RAP WILD-TYPE
  T1              1              256
  T2              6              558
  T3              2              118
  T4              0               35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  IL1RAP MUTATED     7   2   0   0
  IL1RAP WILD-TYPE 455 323 107  68
D46V5, multiclass
    clus
vv   IL1RAP MUTATED IL1RAP WILD-TYPE
  N0              7              455
  N1              2              323
  N2              0              107
  N3              0               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V6, binary
                  cls
clus                 0   1
  IL1RAP MUTATED     7   0
  IL1RAP WILD-TYPE 835  16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL1RAP MUTATED      7    0
  IL1RAP WILD-TYPE  835   16
   clus
vv  IL1RAP MUTATED IL1RAP WILD-TYPE
  0              7              835
  1              0               16
[1] 2 2
[1] FALSE
D46V7, binary
                  cls
clus                 0   1
  IL1RAP MUTATED     9   0
  IL1RAP WILD-TYPE 959   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL1RAP MUTATED      9    0
  IL1RAP WILD-TYPE  959    9
        clus
vv       IL1RAP MUTATED IL1RAP WILD-TYPE
  FEMALE              9              959
  MALE                0                9
[1] 2 2
[1] FALSE
D46V8, binary
                  cls
clus                 0   1
  IL1RAP MUTATED     7   2
  IL1RAP WILD-TYPE 380 500
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL1RAP MUTATED      7    2
  IL1RAP WILD-TYPE  380  500
     clus
vv    IL1RAP MUTATED IL1RAP WILD-TYPE
  NO               7              380
  YES              2              500
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  IL1RAP MUTATED                            0                             7
  IL1RAP WILD-TYPE                          1                           704
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  IL1RAP MUTATED                                2                   0
  IL1RAP WILD-TYPE                            170                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  IL1RAP MUTATED                       0                                0
  IL1RAP WILD-TYPE                     6                               27
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  IL1RAP MUTATED                    0              0
  IL1RAP WILD-TYPE                 14             40
D46V9, multiclass
                                  clus
vv                                 IL1RAP MUTATED IL1RAP WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA                 7              704
  INFILTRATING LOBULAR CARCINOMA                2              170
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)              0               27
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                                0               40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  IL1RAP MUTATED                                  0     0
  IL1RAP WILD-TYPE                                1    57
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  IL1RAP MUTATED                           0     9
  IL1RAP WILD-TYPE                       121   696
D46V11, multiclass
                                  clus
vv                                 IL1RAP MUTATED IL1RAP WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               57
  BLACK OR AFRICAN AMERICAN                     0              121
  WHITE                                         9              696
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V12, binary
                  cls
clus                 0   1
  IL1RAP MUTATED     0   9
  IL1RAP WILD-TYPE  34 763
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL1RAP MUTATED      0    9
  IL1RAP WILD-TYPE   34  763
                        clus
vv                       IL1RAP MUTATED IL1RAP WILD-TYPE
  HISPANIC OR LATINO                  0               34
  NOT HISPANIC OR LATINO              9              763
[1] 2 2
[1] FALSE

Clustering(47) Variable = USP36 MUTATION ANALYSIS
D47V1, survival
                 sevent
clus2               0   1
  USP36 MUTATED     7   0
  USP36 WILD-TYPE 819 138
  USP36 MUTATED USP36 WILD-TYPE 
              7             957 
  USP36 MUTATED USP36 WILD-TYPE 
              0             138 
$`USP36 MUTATED`
TCGA-A8-A07R TCGA-BH-A0B9 TCGA-BH-A0BV TCGA-BH-A18G TCGA-C8-A3M8 TCGA-E2-A155 
        8.98        51.68        49.94         4.90        12.95        21.04 
TCGA-E2-A15J 
       53.92 

$`USP36 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07U TCGA-A8-A07W 
       12.00        32.05         9.99        10.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 
       31.00         0.99       112.08        43.00        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       41.98        12.00         9.99         9.99        12.00        50.04 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       33.07         1.02        25.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        0.99        14.01        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
        0.99        27.02        17.03        38.04        19.23        22.95 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
       73.91         5.72        22.26        73.05        99.35        40.57 
TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       86.66        90.71        60.92        87.12        26.04        74.14 
TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN 
       33.04        19.33        14.66        32.45         6.48        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI 
       14.83        22.19        25.05        14.99        15.48        23.24 
TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y 
       24.79        16.80        14.96        17.42         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.23         0.33         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        9.96         7.36         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.53         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        5.59        80.28        61.35        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       68.75        69.83        58.95        44.42        32.78        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       52.18        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        65.10 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       62.04        55.33        71.80       115.27       113.62       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03       102.31        98.27        82.68        70.42 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       60.56        53.88        40.57        20.45        97.08        82.62 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       11.51        24.79        26.93       130.09        15.62        32.52 
TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 
       84.10        23.31        64.83        55.86        65.36       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       134.14       125.16       108.36       101.00       103.86 
TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS 
       97.68        96.00        86.07        93.90        99.32        37.81 
TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       41.82        94.29        61.28        86.53        86.43        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
      160.90        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28       112.77        97.84       105.27       102.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
      105.30        50.96        98.76        98.66        89.00        99.62 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       93.30        85.64        71.05        93.83       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       86.53        54.21        63.62        38.17        39.39        40.54 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       33.30        38.96        10.59        77.62       143.38       281.29 
TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
       32.58        11.90       275.87       129.57        50.70        65.52 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      146.50       112.37       233.62        18.77       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH 
      165.76       129.07       140.88       255.68        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
      234.28       263.28       162.05       102.77       140.28        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      282.90       169.51        97.48       188.68        79.46        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       21.01       113.79       206.86       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       68.94        58.55        43.59       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
      170.17        37.87         7.07        85.35        74.99        68.12 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       18.84       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 
       25.55        63.09        81.44        37.74        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       70.22        84.13        51.58        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       43.53        61.51        21.70        74.89        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BW 
       75.48        74.14        76.60        85.87        77.75        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       52.96        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       44.81        23.05        32.91        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       17.69        25.81        31.53        97.48        25.08       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.83        33.99        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       110.60        20.88        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.49        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-D8-A13Y TCGA-D8-A13Z 
        9.76        24.56        14.43        33.99        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       19.43        23.87        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15K 
       20.71        21.63        18.21        12.92        55.63         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       20.58        11.05        19.56        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       76.57        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       37.25        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        52.73        34.55 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 
       43.56         8.28        30.61        34.92        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        34.16        36.20        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       41.62        35.77        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       19.99         6.15        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.52         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.84        11.57        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       47.01        64.21        86.96 

  USP36 MUTATED USP36 WILD-TYPE 
           4.90            0.03 
  USP36 MUTATED USP36 WILD-TYPE 
          53.92          282.90 
  USP36 MUTATED USP36 WILD-TYPE 
          21.04           30.97 
[1] "4.9 - 53.9 (21.0)"  "0.0 - 282.9 (31.0)"
[1] "hr="     "1200000"
D47V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  USP36 MUTATED         1        3        0        0         0         2
  USP36 WILD-TYPE      87       68        6        4       326       225
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  USP36 MUTATED           0          0          1          1        0       0
  USP36 WILD-TYPE         2        137         23         56       15      12
D47V3, multiclass
            clus
vv           USP36 MUTATED USP36 WILD-TYPE
  STAGE I                1              87
  STAGE IA               3              68
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              0             326
  STAGE IIB              2             225
  STAGE III              0               2
  STAGE IIIA             0             137
  STAGE IIIB             1              23
  STAGE IIIC             1              56
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  USP36 MUTATED     4   3   0   1
  USP36 WILD-TYPE 253 561 120  34
D47V4, multiclass
    clus
vv   USP36 MUTATED USP36 WILD-TYPE
  T1             4             253
  T2             3             561
  T3             0             120
  T4             1              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  USP36 MUTATED     5   2   0   1
  USP36 WILD-TYPE 457 323 107  67
D47V5, multiclass
    clus
vv   USP36 MUTATED USP36 WILD-TYPE
  N0             5             457
  N1             2             323
  N2             0             107
  N3             1              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V6, binary
                 cls
clus                0   1
  USP36 MUTATED     8   0
  USP36 WILD-TYPE 834  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  USP36 MUTATED      8    0
  USP36 WILD-TYPE  834   16
   clus
vv  USP36 MUTATED USP36 WILD-TYPE
  0             8             834
  1             0              16
[1] 2 2
[1] FALSE
D47V7, binary
                 cls
clus                0   1
  USP36 MUTATED     8   0
  USP36 WILD-TYPE 960   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  USP36 MUTATED      8    0
  USP36 WILD-TYPE  960    9
        clus
vv       USP36 MUTATED USP36 WILD-TYPE
  FEMALE             8             960
  MALE               0               9
[1] 2 2
[1] FALSE
D47V8, binary
                 cls
clus                0   1
  USP36 MUTATED     4   2
  USP36 WILD-TYPE 383 500
[1] "tbl2"
                 cls
clus              [,1] [,2]
  USP36 MUTATED      4    2
  USP36 WILD-TYPE  383  500
     clus
vv    USP36 MUTATED USP36 WILD-TYPE
  NO              4             383
  YES             2             500
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  USP36 MUTATED                            0                             7
  USP36 WILD-TYPE                          1                           704
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  USP36 MUTATED                                1                   0
  USP36 WILD-TYPE                            171                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  USP36 MUTATED                       0                                0
  USP36 WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  USP36 MUTATED                    0              0
  USP36 WILD-TYPE                 14             40
D47V9, multiclass
                                  clus
vv                                 USP36 MUTATED USP36 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA                7             704
  INFILTRATING LOBULAR CARCINOMA               1             171
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               0              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  USP36 MUTATED                                  0     1
  USP36 WILD-TYPE                                1    56
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  USP36 MUTATED                           0     5
  USP36 WILD-TYPE                       121   700
D47V11, multiclass
                                  clus
vv                                 USP36 MUTATED USP36 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        1              56
  BLACK OR AFRICAN AMERICAN                    0             121
  WHITE                                        5             700
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V12, binary
                 cls
clus                0   1
  USP36 MUTATED     0   4
  USP36 WILD-TYPE  34 768
[1] "tbl2"
                 cls
clus              [,1] [,2]
  USP36 MUTATED      0    4
  USP36 WILD-TYPE   34  768
                        clus
vv                       USP36 MUTATED USP36 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO             4             768
[1] 2 2
[1] FALSE

Clustering(48) Variable = CASZ1 MUTATION ANALYSIS
D48V1, survival
                 sevent
clus2               0   1
  CASZ1 MUTATED    10   4
  CASZ1 WILD-TYPE 816 134
  CASZ1 MUTATED CASZ1 WILD-TYPE 
             14             950 
  CASZ1 MUTATED CASZ1 WILD-TYPE 
              4             134 
$`CASZ1 MUTATED`
TCGA-A8-A09K TCGA-A2-A0CR TCGA-A2-A0YE TCGA-A2-A3XY TCGA-A8-A07C TCGA-AC-A23H 
       29.98       107.93        18.21        35.93        33.99         5.72 
TCGA-AN-A046 TCGA-AO-A12E TCGA-BH-A0C1 TCGA-BH-A1FL TCGA-D8-A27G TCGA-E2-A15I 
        0.33        70.42        46.39        55.00        13.45        55.63 
TCGA-E2-A573 TCGA-E9-A228 
       34.92        42.25 

$`CASZ1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
        1.02        49.05        45.07        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CS 
      136.73        99.12        24.79       114.81        92.48        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ 
       75.25         5.19        98.99       107.93        56.81        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       17.52        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YF TCGA-A2-A0YG 
       18.90        20.75        32.55        25.28        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       19.20        16.47        52.47        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT 
      105.34        10.59        36.23        39.65        33.93        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XZ TCGA-A2-A3Y0 
       29.98        32.75        56.28        47.31        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        35.31        34.29        35.47        30.61        37.45 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F 
       35.67        33.11        29.79        31.73        20.19        25.15 
TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       29.56        23.74        20.61        11.34        10.59        10.29 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD 
       13.41        14.70        14.93        13.74        14.66        14.50 
TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O 
       21.17        17.92        14.73        12.10        10.72        13.02 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z 
       13.02         1.02        17.98        31.00        26.01         1.02 
TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07F TCGA-A8-A07G 
       17.03        53.98         9.01        43.00        18.97        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R 
       14.01        12.00        32.05         9.99        10.98         8.98 
TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 
       24.99         9.99        45.07        18.05        36.95        13.02 
TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
        0.99        38.01        28.96        19.96        12.00        37.05 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X 
        9.99        31.00        31.00         0.99       112.08        43.00 
TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A 
       40.01        30.97        41.98        12.00         9.99         9.99 
TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R 
       12.00        50.04        33.07         1.02        25.02         8.98 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       19.04        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD 
       13.02        21.04         0.99        27.02        17.03        38.04 
TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       19.23        22.95        73.91        22.26        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 
       16.31        14.83        22.19        25.05        14.99        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X 
       23.24        24.79        16.80        14.96        17.42         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.33         0.23         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        9.96         7.36         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.53         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        5.59        80.28        61.35        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       68.75        69.83        58.95        44.42        32.78        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       52.18        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        65.10 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       62.04        55.33        71.80       115.27       113.62       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12F 
      106.78       108.03       102.31        98.27        82.68        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       23.31        64.83        55.86        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      134.14       125.16       108.36       101.00       103.86        97.68 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT 
       96.00        86.07        93.90        99.32        37.81        41.82 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      104.28       112.77        97.84       105.27       102.84       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
       50.96        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       85.64        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       11.90       275.87       129.57        50.70        65.52       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      263.28       162.05       102.77       140.28        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      169.51        97.48       188.68        79.46        18.35        21.01 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       58.55        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 
       37.87         7.07        85.35        74.99        68.12        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
      103.63        71.15        62.93        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       63.09        81.44        37.74        39.55        39.16        70.22 
TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       84.13        51.58        51.68        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       43.53        61.51        21.70        74.89        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV 
       75.48        74.14        76.60        85.87        77.75        49.94 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       77.95        74.14        41.75        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       52.96        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       110.60        20.88        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.49        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       14.14        17.42        16.04        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15J 
       17.29        20.71        21.63        18.21        12.92        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        11.05        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       28.50        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A574 TCGA-E9-A1N3 
       34.55        43.56         8.28        30.61        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        34.16        36.20        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       41.62        35.77        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
       32.05        37.74        39.09        38.37        41.03        41.72 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 
       40.73        40.50        20.12         0.69        38.99         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        7.13        24.56        12.33        29.72         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       32.91        30.18        30.44        23.90        23.84        26.70 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
        0.79        25.81        26.40        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV 
       18.21        18.90        13.25        16.57        28.77        25.94 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 
       29.95        29.85        40.41        41.13        39.78        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       23.11        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
        6.15        13.94        10.52        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        17.52 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
        7.40       109.87        59.57       216.76        79.10        83.34 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
      101.62       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       11.57        32.75        17.06        15.32        14.70        14.47 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       27.91        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE 
       64.21        86.96 

  CASZ1 MUTATED CASZ1 WILD-TYPE 
           0.33            0.03 
  CASZ1 MUTATED CASZ1 WILD-TYPE 
         107.93          282.90 
  CASZ1 MUTATED CASZ1 WILD-TYPE 
         35.425          30.525 
[1] "0.3 - 107.9 (35.4)" "0.0 - 282.9 (30.5)"
[1] "hr=" "2.4"
D48V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  CASZ1 MUTATED         0        1        0        0         6         6
  CASZ1 WILD-TYPE      88       70        6        4       320       221
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  CASZ1 MUTATED           0          1          0          0        0       0
  CASZ1 WILD-TYPE         2        136         24         57       15      12
D48V3, multiclass
            clus
vv           CASZ1 MUTATED CASZ1 WILD-TYPE
  STAGE I                0              88
  STAGE IA               1              70
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              6             320
  STAGE IIB              6             221
  STAGE III              0               2
  STAGE IIIA             1             136
  STAGE IIIB             0              24
  STAGE IIIC             0              57
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  CASZ1 MUTATED     2   9   3   0
  CASZ1 WILD-TYPE 255 555 117  35
D48V4, multiclass
    clus
vv   CASZ1 MUTATED CASZ1 WILD-TYPE
  T1             2             255
  T2             9             555
  T3             3             117
  T4             0              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  CASZ1 MUTATED     7   5   1   0
  CASZ1 WILD-TYPE 455 320 106  68
D48V5, multiclass
    clus
vv   CASZ1 MUTATED CASZ1 WILD-TYPE
  N0             7             455
  N1             5             320
  N2             1             106
  N3             0              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V6, binary
                 cls
clus                0   1
  CASZ1 MUTATED    14   0
  CASZ1 WILD-TYPE 828  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CASZ1 MUTATED     14    0
  CASZ1 WILD-TYPE  828   16
   clus
vv  CASZ1 MUTATED CASZ1 WILD-TYPE
  0            14             828
  1             0              16
[1] 2 2
[1] FALSE
D48V7, binary
                 cls
clus                0   1
  CASZ1 MUTATED    14   0
  CASZ1 WILD-TYPE 954   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CASZ1 MUTATED     14    0
  CASZ1 WILD-TYPE  954    9
        clus
vv       CASZ1 MUTATED CASZ1 WILD-TYPE
  FEMALE            14             954
  MALE               0               9
[1] 2 2
[1] FALSE
D48V8, binary
                 cls
clus                0   1
  CASZ1 MUTATED     7   6
  CASZ1 WILD-TYPE 380 496
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CASZ1 MUTATED      7    6
  CASZ1 WILD-TYPE  380  496
     clus
vv    CASZ1 MUTATED CASZ1 WILD-TYPE
  NO              7             380
  YES             6             496
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  CASZ1 MUTATED                            0                            10
  CASZ1 WILD-TYPE                          1                           701
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  CASZ1 MUTATED                                4                   0
  CASZ1 WILD-TYPE                            168                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  CASZ1 MUTATED                       0                                0
  CASZ1 WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  CASZ1 MUTATED                    0              0
  CASZ1 WILD-TYPE                 14             40
D48V9, multiclass
                                  clus
vv                                 CASZ1 MUTATED CASZ1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA               10             701
  INFILTRATING LOBULAR CARCINOMA               4             168
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               0              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CASZ1 MUTATED                                  0     1
  CASZ1 WILD-TYPE                                1    56
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  CASZ1 MUTATED                           2     9
  CASZ1 WILD-TYPE                       119   696
D48V11, multiclass
                                  clus
vv                                 CASZ1 MUTATED CASZ1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        1              56
  BLACK OR AFRICAN AMERICAN                    2             119
  WHITE                                        9             696
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V12, binary
                 cls
clus                0   1
  CASZ1 MUTATED     0  12
  CASZ1 WILD-TYPE  34 760
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CASZ1 MUTATED      0   12
  CASZ1 WILD-TYPE   34  760
                        clus
vv                       CASZ1 MUTATED CASZ1 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO            12             760
[1] 2 2
[1] FALSE

Clustering(49) Variable = EYS MUTATION ANALYSIS
D49V1, survival
               sevent
clus2             0   1
  EYS MUTATED    19   1
  EYS WILD-TYPE 807 137
  EYS MUTATED EYS WILD-TYPE 
           20           944 
  EYS MUTATED EYS WILD-TYPE 
            1           137 
$`EYS MUTATED`
TCGA-A7-A5ZX TCGA-BH-A0B6 TCGA-A2-A0EQ TCGA-A2-A0SY TCGA-A7-A5ZV TCGA-A8-A079 
       11.05        81.63        79.76        44.28        12.10         9.01 
TCGA-A8-A07R TCGA-AC-A23H TCGA-AN-A046 TCGA-AN-A0FW TCGA-AO-A0JD TCGA-C8-A12L 
        8.98         5.72         0.33         0.36        72.00        11.93 
TCGA-C8-A1HM TCGA-C8-A26W TCGA-C8-A26Y TCGA-D8-A1JK TCGA-E2-A150 TCGA-E2-A152 
       12.33        12.53        12.95        20.12        63.62        69.96 
TCGA-E9-A22B TCGA-GI-A2C9 
       38.37       109.87 

$`EYS WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       22.32        11.28        11.97        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 TCGA-C8-A1HL 
       24.62        54.05        32.58        21.44        89.16        10.42 
TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 TCGA-E2-A1LG 
       21.14        14.79        50.79        16.47        73.64        50.07 
TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A440 
       26.99        15.68        52.96        75.02        85.35        24.95 
TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE 
       25.05        14.79        40.08         8.52        14.37        43.43 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       48.10        14.27        47.24        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        39.32        18.21       143.15        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
      121.94        73.84        87.25       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12        24.79       114.81        92.48       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ 
       75.25         5.19        98.99       107.93        56.81        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
      134.40        80.28       118.45        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       34.29        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0T1 
       54.64        27.12        44.88        50.43        17.52        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 
        8.38        49.84        20.52        17.46        18.90        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH 
       32.55        25.28        18.21        50.47        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT 
       49.48        18.61        19.33        48.46        31.73        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       23.47        17.36        60.72        22.45        20.25        19.20 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E 
       16.47        52.47        42.44        17.19        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU 
       10.59        36.23        39.65        33.93        91.07        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       32.75        56.28        47.31        35.93        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        35.31        34.29        35.47        30.61        37.45 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F 
       35.67        33.11        29.79        31.73        20.19        25.15 
TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       29.56        23.74        20.61        11.34        10.59        10.29 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD 
       13.41        14.70        14.93        13.74        14.66        14.50 
TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P 
       21.17        17.92        14.73        10.72        13.02        13.02 
TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 
        1.02        17.98        31.00        26.01         1.02        17.03 
TCGA-A8-A076 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
       53.98        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07U TCGA-A8-A07W 
       12.00        32.05         9.99        10.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 
       31.00         0.99       112.08        43.00        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       41.98        12.00         9.99         9.99        12.00        50.04 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       33.07         1.02        25.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        0.99        14.01        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
        0.99        27.02        17.03        38.04        19.23        22.95 
TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
       73.91        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        7.04         0.33         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        69.83        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       44.42        32.78        21.40        52.18        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        65.10        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
      113.62       108.72       106.78       108.03       102.31        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       97.08        82.62        11.51        24.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY 
       15.62        32.52        84.10        23.31        64.83        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        37.81        41.82        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       89.00        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        54.21        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
      143.38       281.29        32.58        11.90       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
       50.70        65.52       146.50       112.37       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      127.33        84.59       165.76       129.07       140.88       255.68 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
       68.45       212.25       234.28       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.28        89.46       282.90       169.51        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 
       79.46        18.35        21.01       113.79       206.86       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF 
      245.10        28.27        68.94        58.55        43.59       101.52 
TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
       73.51       139.17       170.17        37.87         7.07        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
       74.99        68.12        18.84       103.63        71.15        62.93 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 
       59.84        20.45        25.55        63.09        81.44        37.74 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 
       39.55        39.16        70.22        84.13        51.58        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ 
       37.22        32.02        18.21        43.53        61.51        21.70 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       74.89        61.68        72.23        75.48        74.14        76.60 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 
       85.87        77.75        49.94        77.95        74.14        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       46.39        89.06        90.97        81.73        77.98        67.10 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ 
       38.01        29.98        13.91        78.28        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        79.00        67.86        70.88        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB 
       15.68        14.30         9.63        44.81        81.83        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        63.32        30.35        10.78        15.16        63.39 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       53.26        24.56        23.08        41.00        52.96        26.50 
TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO 
       23.90        20.38         5.85         2.37        16.96         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
       13.61        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        36.82        36.79        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12M 
       10.52       110.60        20.88        18.64        23.51        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        48.53        12.56        12.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       12.59        12.59        12.92        12.46        12.49        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HN 
       10.92        11.34        11.28         0.16        12.03        12.95 
TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.33        20.25        12.36        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       18.97        20.09        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A153 TCGA-E2-A154 
       32.02        31.96        69.34        18.51        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       20.71        21.63        18.21        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        11.05        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       28.50        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22D 
       34.45        32.05        42.25        37.74        39.09        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       19.99         6.15        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
       17.52         7.40        59.57       216.76        79.10        83.34 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
      101.62       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       11.57        32.75        17.06        15.32        14.70        14.47 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       27.91        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE 
       64.21        86.96 

  EYS MUTATED EYS WILD-TYPE 
         0.33          0.03 
  EYS MUTATED EYS WILD-TYPE 
       109.87        282.90 
  EYS MUTATED EYS WILD-TYPE 
        12.74         31.00 
[1] "0.3 - 109.9 (12.7)" "0.0 - 282.9 (31.0)"
[1] "hr=" "2.1"
D49V2, continuous
               vv
clus            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  EYS MUTATED         2        1        0        0        10         2
  EYS WILD-TYPE      86       70        6        4       316       225
               vv
clus            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  EYS MUTATED           0          3          1          2        0       0
  EYS WILD-TYPE         2        134         23         55       15      12
D49V3, multiclass
            clus
vv           EYS MUTATED EYS WILD-TYPE
  STAGE I              2            86
  STAGE IA             1            70
  STAGE IB             0             6
  STAGE II             0             4
  STAGE IIA           10           316
  STAGE IIB            2           225
  STAGE III            0             2
  STAGE IIIA           3           134
  STAGE IIIB           1            23
  STAGE IIIC           2            55
  STAGE IV             0            15
  STAGE X              0            12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus             T1  T2  T3  T4
  EYS MUTATED     3  14   3   1
  EYS WILD-TYPE 254 550 117  34
D49V4, multiclass
    clus
vv   EYS MUTATED EYS WILD-TYPE
  T1           3           254
  T2          14           550
  T3           3           117
  T4           1            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus             N0  N1  N2  N3
  EYS MUTATED    13   3   1   3
  EYS WILD-TYPE 449 322 106  65
D49V5, multiclass
    clus
vv   EYS MUTATED EYS WILD-TYPE
  N0          13           449
  N1           3           322
  N2           1           106
  N3           3            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V6, binary
               cls
clus              0   1
  EYS MUTATED    20   0
  EYS WILD-TYPE 822  16
[1] "tbl2"
               cls
clus            [,1] [,2]
  EYS MUTATED     20    0
  EYS WILD-TYPE  822   16
   clus
vv  EYS MUTATED EYS WILD-TYPE
  0          20           822
  1           0            16
[1] 2 2
[1] FALSE
D49V7, binary
               cls
clus              0   1
  EYS MUTATED    21   0
  EYS WILD-TYPE 947   9
[1] "tbl2"
               cls
clus            [,1] [,2]
  EYS MUTATED     21    0
  EYS WILD-TYPE  947    9
        clus
vv       EYS MUTATED EYS WILD-TYPE
  FEMALE          21           947
  MALE             0             9
[1] 2 2
[1] FALSE
D49V8, binary
               cls
clus              0   1
  EYS MUTATED    10   9
  EYS WILD-TYPE 377 493
[1] "tbl2"
               cls
clus            [,1] [,2]
  EYS MUTATED     10    9
  EYS WILD-TYPE  377  493
     clus
vv    EYS MUTATED EYS WILD-TYPE
  NO           10           377
  YES           9           493
[1] 2 2
[1] FALSE
               vv
clus            INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  EYS MUTATED                            1                            17
  EYS WILD-TYPE                          0                           694
               vv
clus            INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  EYS MUTATED                                2                   0
  EYS WILD-TYPE                            170                   5
               vv
clus            METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  EYS MUTATED                       0                                1
  EYS WILD-TYPE                     6                               26
               vv
clus            MUCINOUS CARCINOMA OTHER, SPECIFY
  EYS MUTATED                    0              0
  EYS WILD-TYPE                 14             40
D49V9, multiclass
                                  clus
vv                                 EYS MUTATED EYS WILD-TYPE
  INFILTRATING CARCINOMA NOS                 1             0
  INFILTRATING DUCTAL CARCINOMA             17           694
  INFILTRATING LOBULAR CARCINOMA             2           170
  MEDULLARY CARCINOMA                        0             5
  METAPLASTIC CARCINOMA                      0             6
  MIXED HISTOLOGY (PLEASE SPECIFY)           1            26
  MUCINOUS CARCINOMA                         0            14
  OTHER, SPECIFY                             0            40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V10, continuous
               vv
clus            AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  EYS MUTATED                                  0     5
  EYS WILD-TYPE                                1    52
               vv
clus            BLACK OR AFRICAN AMERICAN WHITE
  EYS MUTATED                           3    11
  EYS WILD-TYPE                       118   694
D49V11, multiclass
                                  clus
vv                                 EYS MUTATED EYS WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE           0             1
  ASIAN                                      5            52
  BLACK OR AFRICAN AMERICAN                  3           118
  WHITE                                     11           694
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V12, binary
               cls
clus              0   1
  EYS MUTATED     0  19
  EYS WILD-TYPE  34 753
[1] "tbl2"
               cls
clus            [,1] [,2]
  EYS MUTATED      0   19
  EYS WILD-TYPE   34  753
                        clus
vv                       EYS MUTATED EYS WILD-TYPE
  HISPANIC OR LATINO               0            34
  NOT HISPANIC OR LATINO          19           753
[1] 2 2
[1] FALSE

Clustering(50) Variable = KCNN3 MUTATION ANALYSIS
D50V1, survival
                 sevent
clus2               0   1
  KCNN3 MUTATED     8   1
  KCNN3 WILD-TYPE 818 137
  KCNN3 MUTATED KCNN3 WILD-TYPE 
              9             955 
  KCNN3 MUTATED KCNN3 WILD-TYPE 
              1             137 
$`KCNN3 MUTATED`
TCGA-A2-A0D0 TCGA-A2-A0T0 TCGA-A8-A097 TCGA-AO-A0J5 TCGA-C8-A138 TCGA-D8-A1XL 
       67.33        17.52        12.00        26.04        12.49        19.92 
TCGA-D8-A1XT TCGA-E9-A1N9 TCGA-EW-A1J6 
       16.64        36.20        28.77 

$`KCNN3 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       56.81        53.13        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N 
        9.99         9.99        12.00        50.04        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       17.03        38.04        19.23        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH 
       25.05        14.99        15.48        23.24        24.79        16.80 
TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 
       14.96        17.42         0.33         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.53         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J6 
       58.95        44.42        32.78        21.40        52.18        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       72.00        76.77        65.10        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      115.27       113.62       108.72       106.78       108.03       102.31 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        82.68        70.42        60.56        53.88        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J 
       20.45        97.08        82.62        11.51        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX 
      130.09        15.62        32.52        84.10        23.31        64.83 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH 
       55.86        65.36       133.22        83.87       134.14       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO 
      108.36       101.00       103.86        97.68        96.00        86.07 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV 
       93.90        99.32        37.81        41.82        94.29        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L 
       86.53        86.43        33.73       160.90        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
      120.33        99.78       118.59         2.76       104.28       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       97.84       105.27       102.84       105.30        50.96        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       98.66        89.00        99.62        93.30        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM 
       93.83       166.42        20.25        86.53        54.21        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       38.17        39.39        40.54        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA 
       77.62       143.38       281.29        32.58        11.90       275.87 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      129.57        50.70        65.52       146.50       112.37       233.62 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
       18.77       127.33        84.59       165.76       129.07       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO 
      255.68        68.45       212.25       234.28       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.28        89.46       282.90       169.51        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.46        18.35        21.01       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.55        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        74.99        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 
       37.74        39.55        39.16        70.22        84.13        51.58 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       51.68        37.22        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        85.87        77.75        49.94        77.95        74.14 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       41.75        46.39        89.06        90.97        81.73        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP 
       67.10        38.01        29.98        13.91        78.28        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        79.00        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        81.83 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        63.32        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       63.39        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       26.50        23.90        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       17.69        25.81        31.53        97.48        25.08       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.83        33.99        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       110.60        20.88        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.95        15.45        16.87        16.70         0.03         9.76 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z 
       24.56        14.43        33.99        12.95        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       21.83        14.50        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.31        12.99        15.16        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       15.52         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43        48.03        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
       17.06         1.61        10.09        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       33.37        18.51        21.67        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       46.59        40.41        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       47.15        44.68        40.96        38.24        38.60        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       75.98        43.33        34.26        32.02        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       18.51        63.62        69.96        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        25.05        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       20.58        11.05        19.56        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       76.57        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       37.25        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        52.73        34.55 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 
       43.56         8.28        30.61        34.92        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       32.88        36.82        34.16        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ 
       35.77        35.24        25.84        18.94         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 
       28.27        34.95         2.56         6.12         3.02        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE 
       48.23        45.01        32.09        40.24         1.12        46.65 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
        6.58        21.27        46.59        47.64        34.45        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
       42.25        37.74        39.09        38.37        41.03        41.72 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 
       40.73        40.50        20.12         0.69        38.99         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        7.13        24.56        12.33        29.72         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       32.91        30.18        30.44        23.90        23.84        26.70 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
        0.79        25.81        26.40        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1OV TCGA-EW-A1OX 
       18.21        18.90        13.25        16.57        25.94        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 
       29.85        40.41        41.13        39.78        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       18.48        30.08         7.86        18.90        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       13.94        10.52        34.55        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 
       25.91        22.09        34.03        17.49        17.52         7.40 
TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF 
      109.87        59.57       216.76        79.10        83.34        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      110.50        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       13.55        18.12         2.60        62.47        11.84        11.57 
TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 
       32.75        17.06        15.32        14.70        14.47        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       22.39         2.10        36.30        58.52        31.99        58.62 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 
       34.92        36.36        28.87        24.72        22.32        20.38 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD 
       26.70        23.47        65.62        41.92        47.01        64.21 
TCGA-PE-A5DE 
       86.96 

  KCNN3 MUTATED KCNN3 WILD-TYPE 
          12.00            0.03 
  KCNN3 MUTATED KCNN3 WILD-TYPE 
          67.33          282.90 
  KCNN3 MUTATED KCNN3 WILD-TYPE 
          19.92           31.00 
[1] "12.0 - 67.3 (19.9)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.8"
D50V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  KCNN3 MUTATED         1        0        0        0         3         3
  KCNN3 WILD-TYPE      87       71        6        4       323       224
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  KCNN3 MUTATED           0          1          0          0        1       0
  KCNN3 WILD-TYPE         2        136         24         57       14      12
D50V3, multiclass
            clus
vv           KCNN3 MUTATED KCNN3 WILD-TYPE
  STAGE I                1              87
  STAGE IA               0              71
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              3             323
  STAGE IIB              3             224
  STAGE III              0               2
  STAGE IIIA             1             136
  STAGE IIIB             0              24
  STAGE IIIC             0              57
  STAGE IV               1              14
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  KCNN3 MUTATED     2   6   0   1
  KCNN3 WILD-TYPE 255 558 120  34
D50V4, multiclass
    clus
vv   KCNN3 MUTATED KCNN3 WILD-TYPE
  T1             2             255
  T2             6             558
  T3             0             120
  T4             1              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  KCNN3 MUTATED     3   5   1   0
  KCNN3 WILD-TYPE 459 320 106  68
D50V5, multiclass
    clus
vv   KCNN3 MUTATED KCNN3 WILD-TYPE
  N0             3             459
  N1             5             320
  N2             1             106
  N3             0              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V6, binary
                 cls
clus                0   1
  KCNN3 MUTATED     7   1
  KCNN3 WILD-TYPE 835  15
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNN3 MUTATED      7    1
  KCNN3 WILD-TYPE  835   15
   clus
vv  KCNN3 MUTATED KCNN3 WILD-TYPE
  0             7             835
  1             1              15
[1] 2 2
[1] FALSE
D50V7, binary
                 cls
clus                0   1
  KCNN3 MUTATED     9   0
  KCNN3 WILD-TYPE 959   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNN3 MUTATED      9    0
  KCNN3 WILD-TYPE  959    9
        clus
vv       KCNN3 MUTATED KCNN3 WILD-TYPE
  FEMALE             9             959
  MALE               0               9
[1] 2 2
[1] FALSE
D50V8, binary
                 cls
clus                0   1
  KCNN3 MUTATED     5   4
  KCNN3 WILD-TYPE 382 498
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNN3 MUTATED      5    4
  KCNN3 WILD-TYPE  382  498
     clus
vv    KCNN3 MUTATED KCNN3 WILD-TYPE
  NO              5             382
  YES             4             498
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  KCNN3 MUTATED                            0                             7
  KCNN3 WILD-TYPE                          1                           704
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  KCNN3 MUTATED                                0                   0
  KCNN3 WILD-TYPE                            172                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  KCNN3 MUTATED                       0                                1
  KCNN3 WILD-TYPE                     6                               26
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  KCNN3 MUTATED                    0              1
  KCNN3 WILD-TYPE                 14             39
D50V9, multiclass
                                  clus
vv                                 KCNN3 MUTATED KCNN3 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA                7             704
  INFILTRATING LOBULAR CARCINOMA               0             172
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             1              26
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               1              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  KCNN3 MUTATED                                  0     1
  KCNN3 WILD-TYPE                                1    56
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  KCNN3 MUTATED                           1     6
  KCNN3 WILD-TYPE                       120   699
D50V11, multiclass
                                  clus
vv                                 KCNN3 MUTATED KCNN3 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        1              56
  BLACK OR AFRICAN AMERICAN                    1             120
  WHITE                                        6             699
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V12, binary
                 cls
clus                0   1
  KCNN3 MUTATED     1   7
  KCNN3 WILD-TYPE  33 765
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNN3 MUTATED      1    7
  KCNN3 WILD-TYPE   33  765
                        clus
vv                       KCNN3 MUTATED KCNN3 WILD-TYPE
  HISPANIC OR LATINO                 1              33
  NOT HISPANIC OR LATINO             7             765
[1] 2 2
[1] FALSE

Clustering(51) Variable = ZFP36L1 MUTATION ANALYSIS
D51V1, survival
                   sevent
clus2                 0   1
  ZFP36L1 MUTATED     7   1
  ZFP36L1 WILD-TYPE 819 137
  ZFP36L1 MUTATED ZFP36L1 WILD-TYPE 
                8               956 
  ZFP36L1 MUTATED ZFP36L1 WILD-TYPE 
                1               137 
$`ZFP36L1 MUTATED`
TCGA-A8-A084 TCGA-A2-A0T4 TCGA-A2-A3XU TCGA-A8-A07F TCGA-AN-A03X TCGA-C8-A1HN 
       15.06        20.52        29.98        18.97         0.33        12.95 
TCGA-D8-A1XA TCGA-GM-A2DC 
       27.58        83.34 

$`ZFP36L1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       19.99        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T5 
       44.28        17.52        17.13         8.38        49.84        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       91.07        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.83         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ 
       25.15        29.56        23.74        20.61        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC 
       10.29        13.41        14.70        14.93        13.74        14.66 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       13.02        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 
        8.98        24.99         9.99        45.07        18.05        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I 
       13.02         0.99        38.01        28.96        19.96        12.00 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T 
       37.05         9.99        31.00        31.00         0.99       112.08 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       43.00        40.01        30.97        41.98        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00        50.04        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       19.04        13.02        21.04         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       38.04        19.23        22.95        73.91         5.72        22.26 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
       73.05        99.35        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       87.12        26.04        74.14        33.04        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM 
       32.45         6.48        16.31        14.83        22.19        25.05 
TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU 
       14.99        15.48        23.24        24.79        16.80        14.96 
TCGA-AC-A62Y TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A 
       17.42         0.33         0.23         0.33         0.62         2.96 
TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM 
        1.78         1.71         9.96         7.36         7.46         0.16 
TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ 
        0.33         0.33         0.33         6.44         5.65         7.96 
TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV 
        7.00         7.59         7.17         6.90         7.04         0.33 
TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL 
        0.36         0.33         0.33         0.33         0.53         5.36 
TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT 
        0.33        12.33         0.30         0.33         0.33         0.33 
TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N 
        0.33         5.33         5.59        80.28        61.35        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       81.63        95.70        68.75        69.83        58.95        44.42 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       32.78        21.40        52.18        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       22.36        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        65.10        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
      113.62       108.72       106.78       108.03       102.31        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       97.08        82.62        11.51        24.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY 
       15.62        32.52        84.10        23.31        64.83        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        37.81        41.82        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       89.00        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        54.21        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
      143.38       281.29        32.58        11.90       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
       50.70        65.52       146.50       112.37       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      127.33        84.59       165.76       129.07       140.88       255.68 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
       68.45       212.25       234.28       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.28        89.46       282.90       169.51        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 
       79.46        18.35        21.01       113.79       206.86       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF 
      245.10        28.27        68.94        58.55        43.59       101.52 
TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
       73.51       139.17       170.17        37.87         7.07        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
       74.99        68.12        18.84       103.63        71.15        62.93 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 
       59.84        20.45        25.55        63.09        81.44        37.74 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 
       39.55        39.16        70.22        84.13        51.58        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ 
       37.22        32.02        18.21        43.53        61.51        21.70 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       74.89        61.68        72.23        75.48        74.14        76.60 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 
       85.87        77.75        49.94        77.95        74.14        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       46.39        89.06        90.97        81.73        77.98        67.10 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ 
       38.01        29.98        13.91        78.28        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        79.00        67.86        70.88        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB 
       15.68        14.30         9.63        44.81        81.83        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        63.32        30.35        10.78        15.16        63.39 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       53.26        24.56        23.08        41.00        52.96        26.50 
TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO 
       23.90        20.38         5.85         2.37        16.96         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
       13.61        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        36.82        36.79        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       10.52       110.60        20.88        18.64        23.51        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        48.53        12.56        12.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       13.51        12.59        12.59        12.92        12.46        12.49 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y 
       12.33        12.33        20.25        12.53        12.36        12.95 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       15.45        16.87        16.70         0.03         9.76        24.56 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       14.43        33.99        12.95        56.81        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        13.97        14.17        13.48        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       17.49        16.50        55.50        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       12.03        53.00        14.01        18.97        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       20.09        19.40        20.38        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK 
       18.15        12.39        15.22        14.73        21.83        14.50 
TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS 
       19.92        17.69        55.30        16.41        15.85        16.31 
TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ 
       16.64        12.99        15.16        43.04        16.54        15.32 
TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       15.52         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43        48.03        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
       17.06         1.61        10.09        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       33.37        18.51        21.67        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       46.59        40.41        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       47.15        44.68        40.96        38.24        38.60        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       75.98        43.33        34.26        32.02        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       18.51        63.62        69.96        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        25.05        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       20.58        11.05        19.56        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       76.57        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       37.25        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        52.73        34.55 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 
       43.56         8.28        30.61        34.92        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        34.16        36.20        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       41.62        35.77        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       19.99         6.15        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.52         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
      101.62       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       11.57        32.75        17.06        15.32        14.70        14.47 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       27.91        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE 
       64.21        86.96 

  ZFP36L1 MUTATED ZFP36L1 WILD-TYPE 
             0.33              0.03 
  ZFP36L1 MUTATED ZFP36L1 WILD-TYPE 
            83.34            282.90 
  ZFP36L1 MUTATED ZFP36L1 WILD-TYPE 
           19.745            31.000 
[1] "0.3 - 83.3 (19.7)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "1.8"
D51V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  ZFP36L1 MUTATED         0        1        0        0         4         3
  ZFP36L1 WILD-TYPE      88       70        6        4       322       224
                   vv
clus                STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  ZFP36L1 MUTATED           0          0          0          0        0       0
  ZFP36L1 WILD-TYPE         2        137         24         57       15      12
D51V3, multiclass
            clus
vv           ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  STAGE I                  0                88
  STAGE IA                 1                70
  STAGE IB                 0                 6
  STAGE II                 0                 4
  STAGE IIA                4               322
  STAGE IIB                3               224
  STAGE III                0                 2
  STAGE IIIA               0               137
  STAGE IIIB               0                24
  STAGE IIIC               0                57
  STAGE IV                 0                15
  STAGE X                  0                12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                 T1  T2  T3  T4
  ZFP36L1 MUTATED     2   6   0   0
  ZFP36L1 WILD-TYPE 255 558 120  35
D51V4, multiclass
    clus
vv   ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  T1               2               255
  T2               6               558
  T3               0               120
  T4               0                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                 N0  N1  N2  N3
  ZFP36L1 MUTATED     4   4   0   0
  ZFP36L1 WILD-TYPE 458 321 107  68
D51V5, multiclass
    clus
vv   ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  N0               4               458
  N1               4               321
  N2               0               107
  N3               0                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V6, binary
                   cls
clus                  0   1
  ZFP36L1 MUTATED     8   0
  ZFP36L1 WILD-TYPE 834  16
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZFP36L1 MUTATED      8    0
  ZFP36L1 WILD-TYPE  834   16
   clus
vv  ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  0               8               834
  1               0                16
[1] 2 2
[1] FALSE
D51V7, binary
                   cls
clus                  0   1
  ZFP36L1 MUTATED     8   0
  ZFP36L1 WILD-TYPE 960   9
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZFP36L1 MUTATED      8    0
  ZFP36L1 WILD-TYPE  960    9
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  FEMALE               8               960
  MALE                 0                 9
[1] 2 2
[1] FALSE
D51V8, binary
                   cls
clus                  0   1
  ZFP36L1 MUTATED     3   5
  ZFP36L1 WILD-TYPE 384 497
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZFP36L1 MUTATED      3    5
  ZFP36L1 WILD-TYPE  384  497
     clus
vv    ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  NO                3               384
  YES               5               497
[1] 2 2
[1] FALSE
                   vv
clus                INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  ZFP36L1 MUTATED                            0                             7
  ZFP36L1 WILD-TYPE                          1                           704
                   vv
clus                INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  ZFP36L1 MUTATED                                1                   0
  ZFP36L1 WILD-TYPE                            171                   5
                   vv
clus                METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  ZFP36L1 MUTATED                       0                                0
  ZFP36L1 WILD-TYPE                     6                               27
                   vv
clus                MUCINOUS CARCINOMA OTHER, SPECIFY
  ZFP36L1 MUTATED                    0              0
  ZFP36L1 WILD-TYPE                 14             40
D51V9, multiclass
                                  clus
vv                                 ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                     0                 1
  INFILTRATING DUCTAL CARCINOMA                  7               704
  INFILTRATING LOBULAR CARCINOMA                 1               171
  MEDULLARY CARCINOMA                            0                 5
  METAPLASTIC CARCINOMA                          0                 6
  MIXED HISTOLOGY (PLEASE SPECIFY)               0                27
  MUCINOUS CARCINOMA                             0                14
  OTHER, SPECIFY                                 0                40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V10, continuous
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ZFP36L1 MUTATED                                  0     1
  ZFP36L1 WILD-TYPE                                1    56
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  ZFP36L1 MUTATED                           1     4
  ZFP36L1 WILD-TYPE                       120   701
D51V11, multiclass
                                  clus
vv                                 ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          1                56
  BLACK OR AFRICAN AMERICAN                      1               120
  WHITE                                          4               701
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V12, binary
                   cls
clus                  0   1
  ZFP36L1 MUTATED     0   6
  ZFP36L1 WILD-TYPE  34 766
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZFP36L1 MUTATED      0    6
  ZFP36L1 WILD-TYPE   34  766
                        clus
vv                       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  HISPANIC OR LATINO                   0                34
  NOT HISPANIC OR LATINO               6               766
[1] 2 2
[1] FALSE

Clustering(52) Variable = ICOSLG MUTATION ANALYSIS
D52V1, survival
                  sevent
clus2                0   1
  ICOSLG MUTATED     4   1
  ICOSLG WILD-TYPE 822 137
  ICOSLG MUTATED ICOSLG WILD-TYPE 
               5              959 
  ICOSLG MUTATED ICOSLG WILD-TYPE 
               1              137 
$`ICOSLG MUTATED`
TCGA-A8-A091 TCGA-EW-A1J5 TCGA-AO-A0JL TCGA-AR-A24S TCGA-B6-A0WW 
       33.01        15.68        55.33        97.84        18.35 

$`ICOSLG WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A093 TCGA-A8-A09C 
       19.99        15.06        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A440 
       50.07        26.99        52.96        75.02        85.35        24.95 
TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE 
       25.05        14.79        40.08         8.52        14.37        43.43 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       48.10        14.27        47.24        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        39.32        18.21       143.15        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
      121.94        73.84        87.25       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12        24.79       114.81        92.48       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ 
       75.25         5.19        98.99       107.93        56.81        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       17.52        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27       113.62       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
      102.31        98.27        82.68        70.42        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
      112.77       105.27       102.84       105.30        50.96        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       98.66        89.00        99.62        93.30        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM 
       93.83       166.42        20.25        86.53        54.21        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       38.17        39.39        40.54        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA 
       77.62       143.38       281.29        32.58        11.90       275.87 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      129.57        50.70        65.52       146.50       112.37       233.62 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
       18.77       127.33        84.59       165.76       129.07       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO 
      255.68        68.45       212.25       234.28       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.28        89.46       282.90       169.51        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 
      188.68        79.46        21.01       113.79       206.86       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF 
      245.10        28.27        68.94        58.55        43.59       101.52 
TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
       73.51       139.17       170.17        37.87         7.07        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
       74.99        68.12        18.84       103.63        71.15        62.93 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 
       59.84        20.45        25.55        63.09        81.44        37.74 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 
       39.55        39.16        70.22        84.13        51.58        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ 
       37.22        32.02        18.21        43.53        61.51        21.70 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       74.89        61.68        72.23        75.48        74.14        76.60 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 
       85.87        77.75        49.94        77.95        74.14        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       46.39        89.06        90.97        81.73        77.98        67.10 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ 
       38.01        29.98        13.91        78.28        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        79.00        67.86        70.88        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB 
       15.68        14.30         9.63        44.81        81.83        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        63.32        30.35        10.78        15.16        63.39 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       53.26        24.56        23.08        41.00        52.96        26.50 
TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO 
       23.90        20.38         5.85         2.37        16.96         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
       13.61        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        36.82        36.79        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       10.52       110.60        20.88        18.64        23.51        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        48.53        12.56        12.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       13.51        12.59        12.59        12.92        12.46        12.49 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.95        15.45        16.87        16.70         0.03         9.76 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z 
       24.56        14.43        33.99        12.95        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02        11.15        48.23        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       40.24         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       115.69       106.06       101.62       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        58.52        31.99        58.62        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       65.62        41.92        47.01        64.21        86.96 

  ICOSLG MUTATED ICOSLG WILD-TYPE 
           15.68             0.03 
  ICOSLG MUTATED ICOSLG WILD-TYPE 
           97.84           282.90 
  ICOSLG MUTATED ICOSLG WILD-TYPE 
           33.01            30.61 
[1] "15.7 - 97.8 (33.0)" "0.0 - 282.9 (30.6)"
[1] "hr=" "1.4"
D52V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  ICOSLG MUTATED         1        0        0        0         1         1
  ICOSLG WILD-TYPE      87       71        6        4       325       226
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  ICOSLG MUTATED           0          1          0          0        0       1
  ICOSLG WILD-TYPE         2        136         24         57       15      11
D52V3, multiclass
            clus
vv           ICOSLG MUTATED ICOSLG WILD-TYPE
  STAGE I                 1               87
  STAGE IA                0               71
  STAGE IB                0                6
  STAGE II                0                4
  STAGE IIA               1              325
  STAGE IIB               1              226
  STAGE III               0                2
  STAGE IIIA              1              136
  STAGE IIIB              0               24
  STAGE IIIC              0               57
  STAGE IV                0               15
  STAGE X                 1               11
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  ICOSLG MUTATED     1   3   1   0
  ICOSLG WILD-TYPE 256 561 119  35
D52V4, multiclass
    clus
vv   ICOSLG MUTATED ICOSLG WILD-TYPE
  T1              1              256
  T2              3              561
  T3              1              119
  T4              0               35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  ICOSLG MUTATED     3   1   1   0
  ICOSLG WILD-TYPE 459 324 106  68
D52V5, multiclass
    clus
vv   ICOSLG MUTATED ICOSLG WILD-TYPE
  N0              3              459
  N1              1              324
  N2              1              106
  N3              0               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V6, binary
                  cls
clus                 0   1
  ICOSLG MUTATED     4   0
  ICOSLG WILD-TYPE 838  16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ICOSLG MUTATED      4    0
  ICOSLG WILD-TYPE  838   16
   clus
vv  ICOSLG MUTATED ICOSLG WILD-TYPE
  0              4              838
  1              0               16
[1] 2 2
[1] FALSE
D52V7, binary
                  cls
clus                 0   1
  ICOSLG MUTATED     5   0
  ICOSLG WILD-TYPE 963   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ICOSLG MUTATED      5    0
  ICOSLG WILD-TYPE  963    9
        clus
vv       ICOSLG MUTATED ICOSLG WILD-TYPE
  FEMALE              5              963
  MALE                0                9
[1] 2 2
[1] FALSE
D52V8, binary
                  cls
clus                 0   1
  ICOSLG MUTATED     1   4
  ICOSLG WILD-TYPE 386 498
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ICOSLG MUTATED      1    4
  ICOSLG WILD-TYPE  386  498
     clus
vv    ICOSLG MUTATED ICOSLG WILD-TYPE
  NO               1              386
  YES              4              498
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  ICOSLG MUTATED                            0                             4
  ICOSLG WILD-TYPE                          1                           707
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  ICOSLG MUTATED                                1                   0
  ICOSLG WILD-TYPE                            171                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  ICOSLG MUTATED                       0                                0
  ICOSLG WILD-TYPE                     6                               27
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  ICOSLG MUTATED                    0              0
  ICOSLG WILD-TYPE                 14             40
D52V9, multiclass
                                  clus
vv                                 ICOSLG MUTATED ICOSLG WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA                 4              707
  INFILTRATING LOBULAR CARCINOMA                1              171
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)              0               27
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                                0               40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ICOSLG MUTATED                                  0     0
  ICOSLG WILD-TYPE                                1    57
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  ICOSLG MUTATED                           1     3
  ICOSLG WILD-TYPE                       120   702
D52V11, multiclass
                                  clus
vv                                 ICOSLG MUTATED ICOSLG WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               57
  BLACK OR AFRICAN AMERICAN                     1              120
  WHITE                                         3              702
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V12, binary
                  cls
clus                 0   1
  ICOSLG MUTATED     0   4
  ICOSLG WILD-TYPE  34 768
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ICOSLG MUTATED      0    4
  ICOSLG WILD-TYPE   34  768
                        clus
vv                       ICOSLG MUTATED ICOSLG WILD-TYPE
  HISPANIC OR LATINO                  0               34
  NOT HISPANIC OR LATINO              4              768
[1] 2 2
[1] FALSE

Clustering(53) Variable = ACTL6B MUTATION ANALYSIS
D53V1, survival
                  sevent
clus2                0   1
  ACTL6B MUTATED     7   3
  ACTL6B WILD-TYPE 819 135
  ACTL6B MUTATED ACTL6B WILD-TYPE 
              10              954 
  ACTL6B MUTATED ACTL6B WILD-TYPE 
               3              135 
$`ACTL6B MUTATED`
TCGA-A2-A0CO TCGA-A2-A0T2 TCGA-A8-A06P TCGA-AR-A24H TCGA-B6-A0IG TCGA-B6-A0RU 
      114.81         8.38        13.02       160.90       146.50       282.90 
TCGA-BH-A0BR TCGA-BH-A0H0 TCGA-D8-A1X6 TCGA-D8-A27H 
       76.60        15.16        17.79        13.05 

$`ACTL6B WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CP TCGA-A2-A0CR 
       55.43       136.73        99.12        24.79        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       44.28        17.52        17.13        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       10.72        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        43.00        40.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N 
        9.99         9.99        12.00        50.04        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       17.03        38.04        19.23        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH 
       25.05        14.99        15.48        23.24        24.79        16.80 
TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 
       14.96        17.42         0.33         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.53         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27       113.62       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
      102.31        98.27        82.68        70.42        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L 
       61.28        86.53        86.43        33.73        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
      120.33        99.78       118.59         2.76       104.28       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       97.84       105.27       102.84       105.30        50.96        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       98.66        89.00        99.62        93.30        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM 
       93.83       166.42        20.25        86.53        54.21        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       38.17        39.39        40.54        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA 
       77.62       143.38       281.29        32.58        11.90       275.87 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
      129.57        50.70        65.52       112.37       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      127.33        84.59       165.76       129.07       140.88       255.68 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
       68.45       212.25       234.28       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
      140.28        89.46       169.51        97.48       188.68        79.46 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.01       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.55        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       68.12        18.84       103.63        71.15        62.93        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 
       20.45        25.55        63.09        81.44        37.74        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.16        70.22        84.13        51.58        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT 
       61.68        72.23        75.48        74.14        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        81.73        77.98        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        78.28        15.65         3.22         2.56        79.00 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        70.88        16.27         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
        9.63        44.81        81.83        24.49        31.00        63.32 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       30.35        10.78        63.39        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK 
       41.00        52.96        26.50        23.90        20.38         5.85 
TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
        2.37        16.96         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       51.32        27.25        50.79         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       42.35        44.81        23.05        32.91         4.90        35.93 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
       20.12        90.84        26.66        72.56        37.74        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       55.63        37.55        66.05         7.36        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       69.93        91.99       113.82        82.85        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 
       55.69        49.58        17.69        25.81        31.53        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       25.08       114.15        33.17        74.73       122.83        33.99 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       63.35        55.00        45.63        72.07        53.98        55.50 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       28.14        26.14        38.60        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       36.82        36.79        20.12        10.52       110.60        20.88 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       18.64        23.51        11.93        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       48.53        12.56        12.16        13.51        12.59        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92        12.46        12.49        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
       11.28         0.16        12.03        12.33        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       20.25        12.53        12.36        12.95        15.45        16.87 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
       16.70         0.03         9.76        24.56        14.43        33.99 
TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
       12.95        56.81        20.88        13.25        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA 
       14.17        13.48        19.20        14.17        17.49        16.50 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG 
       55.50        15.78        18.15        18.90        12.03        53.00 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       14.01        18.97        20.09        20.12        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 
       20.38        21.01        12.20        13.32        14.70        18.58 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM 
       15.22        14.73        21.83        14.50        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU 
       55.30        16.41        15.85        16.31        16.64        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       15.16        43.04        16.54        15.32        15.52         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27I 
       14.24        14.14        17.42        16.04        13.45        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       70.36        33.73        33.70        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 
       22.19        60.99        11.08        54.18        60.36        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       24.59        75.81        28.90       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        52.73        34.55        43.56         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        38.76        34.82        32.88        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       36.20        36.56        39.55        41.62        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       25.84        18.94         9.86        24.82        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02        11.15        48.23        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       32.09        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       20.12         0.69        38.99         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       12.33        29.72         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       26.40        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        28.77        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        17.52         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 
       18.12         2.60        62.47        11.84        11.57        32.75 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U 
       17.06        15.32        14.70        14.47        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  ACTL6B MUTATED ACTL6B WILD-TYPE 
            8.38             0.03 
  ACTL6B MUTATED ACTL6B WILD-TYPE 
          282.90           281.29 
  ACTL6B MUTATED ACTL6B WILD-TYPE 
          47.195           30.790 
[1] "8.4 - 282.9 (47.2)" "0.0 - 281.3 (30.8)"
[1] "hr=" "1.3"
D53V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  ACTL6B MUTATED         1        2        0        0         2         2
  ACTL6B WILD-TYPE      87       69        6        4       324       225
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  ACTL6B MUTATED           0          2          0          0        1       0
  ACTL6B WILD-TYPE         2        135         24         57       14      12
D53V3, multiclass
            clus
vv           ACTL6B MUTATED ACTL6B WILD-TYPE
  STAGE I                 1               87
  STAGE IA                2               69
  STAGE IB                0                6
  STAGE II                0                4
  STAGE IIA               2              324
  STAGE IIB               2              225
  STAGE III               0                2
  STAGE IIIA              2              135
  STAGE IIIB              0               24
  STAGE IIIC              0               57
  STAGE IV                1               14
  STAGE X                 0               12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  ACTL6B MUTATED     4   3   3   0
  ACTL6B WILD-TYPE 253 561 117  35
D53V4, multiclass
    clus
vv   ACTL6B MUTATED ACTL6B WILD-TYPE
  T1              4              253
  T2              3              561
  T3              3              117
  T4              0               35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  ACTL6B MUTATED     6   1   2   1
  ACTL6B WILD-TYPE 456 324 105  67
D53V5, multiclass
    clus
vv   ACTL6B MUTATED ACTL6B WILD-TYPE
  N0              6              456
  N1              1              324
  N2              2              105
  N3              1               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V6, binary
                  cls
clus                 0   1
  ACTL6B MUTATED     8   1
  ACTL6B WILD-TYPE 834  15
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACTL6B MUTATED      8    1
  ACTL6B WILD-TYPE  834   15
   clus
vv  ACTL6B MUTATED ACTL6B WILD-TYPE
  0              8              834
  1              1               15
[1] 2 2
[1] FALSE
D53V7, binary
                  cls
clus                 0   1
  ACTL6B MUTATED    10   0
  ACTL6B WILD-TYPE 958   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACTL6B MUTATED     10    0
  ACTL6B WILD-TYPE  958    9
        clus
vv       ACTL6B MUTATED ACTL6B WILD-TYPE
  FEMALE             10              958
  MALE                0                9
[1] 2 2
[1] FALSE
D53V8, binary
                  cls
clus                 0   1
  ACTL6B MUTATED     3   7
  ACTL6B WILD-TYPE 384 495
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACTL6B MUTATED      3    7
  ACTL6B WILD-TYPE  384  495
     clus
vv    ACTL6B MUTATED ACTL6B WILD-TYPE
  NO               3              384
  YES              7              495
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  ACTL6B MUTATED                            0                             7
  ACTL6B WILD-TYPE                          1                           704
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  ACTL6B MUTATED                                2                   0
  ACTL6B WILD-TYPE                            170                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  ACTL6B MUTATED                       0                                0
  ACTL6B WILD-TYPE                     6                               27
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  ACTL6B MUTATED                    0              1
  ACTL6B WILD-TYPE                 14             39
D53V9, multiclass
                                  clus
vv                                 ACTL6B MUTATED ACTL6B WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA                 7              704
  INFILTRATING LOBULAR CARCINOMA                2              170
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)              0               27
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                                1               39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ACTL6B MUTATED                                  0     0
  ACTL6B WILD-TYPE                                1    57
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  ACTL6B MUTATED                           0     9
  ACTL6B WILD-TYPE                       121   696
D53V11, multiclass
                                  clus
vv                                 ACTL6B MUTATED ACTL6B WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               57
  BLACK OR AFRICAN AMERICAN                     0              121
  WHITE                                         9              696
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V12, binary
                  cls
clus                 0   1
  ACTL6B MUTATED     0   8
  ACTL6B WILD-TYPE  34 764
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACTL6B MUTATED      0    8
  ACTL6B WILD-TYPE   34  764
                        clus
vv                       ACTL6B MUTATED ACTL6B WILD-TYPE
  HISPANIC OR LATINO                  0               34
  NOT HISPANIC OR LATINO              8              764
[1] 2 2
[1] FALSE

Clustering(54) Variable = MYH9 MUTATION ANALYSIS
D54V1, survival
                sevent
clus2              0   1
  MYH9 MUTATED    16   2
  MYH9 WILD-TYPE 810 136
  MYH9 MUTATED MYH9 WILD-TYPE 
            18            946 
  MYH9 MUTATED MYH9 WILD-TYPE 
             2            136 
$`MYH9 MUTATED`
TCGA-EW-A1J5 TCGA-A2-A0CP TCGA-A2-A0T5 TCGA-A7-A3IZ TCGA-A8-A0A7 TCGA-AC-A23H 
       15.68        92.48        17.46        10.59         0.99         5.72 
TCGA-AC-A2FB TCGA-AR-A1AT TCGA-AR-A2LE TCGA-B6-A0RN TCGA-BH-A0HK TCGA-BH-A18G 
       40.57        41.82       166.42       263.28         5.85         4.90 
TCGA-C8-A12L TCGA-D8-A1XK TCGA-D8-A27N TCGA-E2-A1LS TCGA-GM-A5PX TCGA-OL-A5DA 
       11.93        14.50        17.06        52.73        18.12        58.62 

$`MYH9 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       73.64        50.07        26.99        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CR TCGA-A2-A0CS 
      136.73        99.12        24.79       114.81       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ 
       75.25         5.19        98.99       107.93        56.81        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T6 
       17.52        17.13         8.38        49.84        20.52        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       19.20        16.47        52.47        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT 
      105.34        10.59        36.23        39.65        33.93        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.83         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3J0 
       25.15        29.56        23.74        20.61        11.34        10.29 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD 
       13.41        14.70        14.93        13.74        14.66        14.50 
TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O 
       21.17        17.92        14.73        12.10        10.72        13.02 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z 
       13.02         1.02        17.98        31.00        26.01         1.02 
TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F 
       17.03        53.98         9.01        43.00        33.99        18.97 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 
        8.98        24.99         9.99        45.07        18.05        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I 
       13.02         0.99        38.01        28.96        19.96        12.00 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T 
       37.05         9.99        31.00        31.00         0.99       112.08 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       43.00        40.01        30.97        41.98        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00        50.04        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD 
       19.04        13.02        21.04        27.02        17.03        38.04 
TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       19.23        22.95        73.91        22.26        73.05        99.35 
TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       86.66        90.71        60.92        87.12        26.04        74.14 
TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN 
       33.04        19.33        14.66        32.45         6.48        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI 
       14.83        22.19        25.05        14.99        15.48        23.24 
TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y 
       24.79        16.80        14.96        17.42         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.23         0.33         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        9.96         7.36         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.53         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        5.59        80.28        61.35        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       68.75        69.83        58.95        44.42        32.78        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       52.18        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        65.10 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       62.04        55.33        71.80       115.27       113.62       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03       102.31        98.27        82.68        70.42 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       60.56        53.88        40.57        20.45        97.08        82.62 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       11.51        24.79        26.93       130.09        15.62        32.52 
TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 
       84.10        23.31        64.83        55.86        65.36       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       134.14       125.16       108.36       101.00       103.86 
TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS 
       97.68        96.00        86.07        93.90        99.32        37.81 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      104.28       112.77        97.84       105.27       102.84       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
       50.96        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       85.64        71.05        93.83        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       63.62        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 
       10.59        77.62       143.38       281.29        32.58        11.90 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RO 
      140.88       255.68        68.45       212.25       234.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.28        89.46       282.90       169.51        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.46        18.35        21.01       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.55        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        74.99        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 
       37.74        39.55        39.16        70.22        84.13        51.58 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       51.68        37.22        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        85.87        77.75        49.94        77.95        74.14 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       41.75        46.39        89.06        90.97        81.73        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP 
       67.10        38.01        29.98        13.91        78.28        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        79.00        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        81.83 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        63.32        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       63.39        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO 
       26.50        23.90        20.38         2.37        16.96         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
       13.61        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
       32.91        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       37.74        30.28        55.63        37.55        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       51.39        51.16        69.93        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       42.28        12.00        55.69        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       31.53        97.48        25.08       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN 
      122.83        33.99        63.35        55.00        45.63        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
       53.98        55.50        28.14        26.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       57.83       130.16        36.82        36.79        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12M TCGA-C8-A12N 
      110.60        20.88        18.64        23.51        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W 
       12.66        11.77        12.66        12.66        12.66        12.66 
TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 
       12.66        48.53        12.56        12.16        13.51        12.59 
TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF 
       12.59        12.92        12.46        12.49        12.33        10.92 
TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN 
       11.34        11.28         0.16        12.03        12.33        12.95 
TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z 
       12.33        20.25        12.53        12.36        12.95        15.45 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B 
       16.87        16.70         0.03         9.76        24.56        14.43 
TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 
       33.99        12.95        56.81        20.88        13.25        20.58 
TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 
       13.97        14.17        13.48        19.20        14.17        17.49 
TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF 
       16.50        55.50        15.78        18.15        18.90        12.03 
TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL 
       53.00        14.01        18.97        20.09        20.12        20.09 
TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU 
       19.40        20.38        21.01        12.20        13.32        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA 
       18.58        17.79        16.73        25.74        23.90        27.58 
TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL 
       18.15        12.39        15.22        14.73        21.83        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       17.69        55.30        16.41        15.85        16.31        16.64 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 
       12.99        15.16        43.04        16.54        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
        9.93        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27P 
       13.05        14.43        48.03        16.41        13.48         1.61 
TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 
       10.09        13.08        12.53        12.26        33.37        18.51 
TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       21.67        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O 
       37.51        40.11        28.44        28.87        47.15        44.68 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       40.96        38.24        38.60        33.17        75.98        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       34.26        32.02        31.96        69.34        18.51        63.62 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 
       69.96        23.24        19.43        21.04        23.87        25.05 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G 
       23.34        22.82        17.29        20.71        21.63        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        55.63        53.92         9.04        20.58        11.05 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 
       19.56        56.94        14.07        51.39        76.57        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE 
       87.22        33.01        32.35        28.50        37.25        77.65 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.41        70.36        33.73        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
        3.88        22.19        60.99        11.08        54.18        60.36 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI 
       19.66        24.59        75.81        28.90       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
        8.75        43.04        34.55        43.56         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        38.76        34.82        32.88        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       36.20        36.56        39.55        41.62        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       25.84        18.94         9.86        24.82        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02        11.15        48.23        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       32.09        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       20.12         0.69        38.99         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       12.33        29.72         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       26.40        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        28.77        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        17.52         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       36.30        58.52        31.99        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       41.92        47.01        64.21        86.96 

  MYH9 MUTATED MYH9 WILD-TYPE 
          0.99           0.03 
  MYH9 MUTATED MYH9 WILD-TYPE 
        263.28         282.90 
  MYH9 MUTATED MYH9 WILD-TYPE 
         17.26          31.00 
[1] "1.0 - 263.3 (17.3)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.6"
D54V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  MYH9 MUTATED         1        4        0        0         7         5
  MYH9 WILD-TYPE      87       67        6        4       319       222
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  MYH9 MUTATED           0          1          0          0        0       0
  MYH9 WILD-TYPE         2        136         24         57       15      12
D54V3, multiclass
            clus
vv           MYH9 MUTATED MYH9 WILD-TYPE
  STAGE I               1             87
  STAGE IA              4             67
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             7            319
  STAGE IIB             5            222
  STAGE III             0              2
  STAGE IIIA            1            136
  STAGE IIIB            0             24
  STAGE IIIC            0             57
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  MYH9 MUTATED     5  12   1   0
  MYH9 WILD-TYPE 252 552 119  35
D54V4, multiclass
    clus
vv   MYH9 MUTATED MYH9 WILD-TYPE
  T1            5            252
  T2           12            552
  T3            1            119
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  MYH9 MUTATED    12   4   1   0
  MYH9 WILD-TYPE 450 321 106  68
D54V5, multiclass
    clus
vv   MYH9 MUTATED MYH9 WILD-TYPE
  N0           12            450
  N1            4            321
  N2            1            106
  N3            0             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V6, binary
                cls
clus               0   1
  MYH9 MUTATED    15   0
  MYH9 WILD-TYPE 827  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  MYH9 MUTATED     15    0
  MYH9 WILD-TYPE  827   16
   clus
vv  MYH9 MUTATED MYH9 WILD-TYPE
  0           15            827
  1            0             16
[1] 2 2
[1] FALSE
D54V7, binary
                cls
clus               0   1
  MYH9 MUTATED    18   0
  MYH9 WILD-TYPE 950   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  MYH9 MUTATED     18    0
  MYH9 WILD-TYPE  950    9
        clus
vv       MYH9 MUTATED MYH9 WILD-TYPE
  FEMALE           18            950
  MALE              0              9
[1] 2 2
[1] FALSE
D54V8, binary
                cls
clus               0   1
  MYH9 MUTATED    10   7
  MYH9 WILD-TYPE 377 495
[1] "tbl2"
                cls
clus             [,1] [,2]
  MYH9 MUTATED     10    7
  MYH9 WILD-TYPE  377  495
     clus
vv    MYH9 MUTATED MYH9 WILD-TYPE
  NO            10            377
  YES            7            495
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  MYH9 MUTATED                            0                            10
  MYH9 WILD-TYPE                          1                           701
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  MYH9 MUTATED                                8                   0
  MYH9 WILD-TYPE                            164                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  MYH9 MUTATED                       0                                0
  MYH9 WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  MYH9 MUTATED                    0              0
  MYH9 WILD-TYPE                 14             40
D54V9, multiclass
                                  clus
vv                                 MYH9 MUTATED MYH9 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA              10            701
  INFILTRATING LOBULAR CARCINOMA              8            164
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              0             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MYH9 MUTATED                                  0     1
  MYH9 WILD-TYPE                                1    56
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  MYH9 MUTATED                           0    16
  MYH9 WILD-TYPE                       121   689
D54V11, multiclass
                                  clus
vv                                 MYH9 MUTATED MYH9 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       1             56
  BLACK OR AFRICAN AMERICAN                   0            121
  WHITE                                      16            689
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V12, binary
                cls
clus               0   1
  MYH9 MUTATED     0  15
  MYH9 WILD-TYPE  34 757
[1] "tbl2"
                cls
clus             [,1] [,2]
  MYH9 MUTATED      0   15
  MYH9 WILD-TYPE   34  757
                        clus
vv                       MYH9 MUTATED MYH9 WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO           15            757
[1] 2 2
[1] FALSE

Clustering(55) Variable = FBXW7 MUTATION ANALYSIS
D55V1, survival
                 sevent
clus2               0   1
  FBXW7 MUTATED    14   1
  FBXW7 WILD-TYPE 812 137
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             15             949 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
              1             137 
$`FBXW7 MUTATED`
TCGA-A1-A0SP TCGA-A2-A0D0 TCGA-A2-A3XT TCGA-A8-A09M TCGA-A8-A0A6 TCGA-AC-A2QI 
       19.20        67.33        91.07        33.07        21.04        19.33 
TCGA-AN-A046 TCGA-AR-A256 TCGA-BH-A2L8 TCGA-D8-A1XK TCGA-E2-A15L TCGA-E2-A574 
        0.33        93.83        20.12        14.50        20.58        38.76 
TCGA-E9-A22E TCGA-EW-A1PE TCGA-GM-A3XL 
       41.72        10.52        69.30 

$`FBXW7 WILD-TYPE`
TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A TCGA-A7-A0CD 
       63.12        36.13        88.60        19.56       107.70        38.30 
TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       23.61        31.36        24.26        23.80        21.73        22.32 
TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       11.28        11.97        11.05        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       53.13        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       17.52        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.83         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ 
       25.15        29.56        23.74        20.61        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC 
       10.29        13.41        14.70        14.93        13.74        14.66 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       13.02        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        43.00        40.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09N TCGA-A8-A09Q 
        9.99         9.99        12.00        50.04         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD 
       19.04        13.02         0.99        27.02        17.03        38.04 
TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK 
       19.23        22.95        73.91         5.72        22.26        73.05 
TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK 
       99.35        40.57        86.66        90.71        60.92        87.12 
TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       26.04        74.14        33.04        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 
       16.31        14.83        22.19        25.05        14.99        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X 
       23.24        24.79        16.80        14.96        17.42         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.33         0.23         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        9.96         7.36         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.53         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        5.59        80.28        61.35        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       68.75        69.83        58.95        44.42        32.78        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       52.18        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        65.10 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       62.04        55.33        71.80       115.27       113.62       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03       102.31        98.27        82.68        70.42 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       60.56        53.88        40.57        20.45        97.08        82.62 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       11.51        24.79        26.93       130.09        15.62        32.52 
TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 
       84.10        23.31        64.83        55.86        65.36       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       134.14       125.16       108.36       101.00       103.86 
TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS 
       97.68        96.00        86.07        93.90        99.32        37.81 
TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       41.82        94.29        61.28        86.53        86.43        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
      160.90        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28       112.77        97.84       105.27       102.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
      105.30        50.96        98.76        98.66        89.00        99.62 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       93.30        85.64        71.05       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       11.90       275.87       129.57        50.70        65.52       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      263.28       162.05       102.77       140.28        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      169.51        97.48       188.68        79.46        18.35        21.01 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       58.55        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 
       37.87         7.07        85.35        74.99        68.12        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
      103.63        71.15        62.93        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       63.09        81.44        37.74        39.55        39.16        70.22 
TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       84.13        51.58        51.68        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       43.53        61.51        21.70        74.89        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV 
       75.48        74.14        76.60        85.87        77.75        49.94 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 
       77.95        74.14        41.75        46.39        89.06        90.97 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       81.73        77.98        67.10        38.01        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       78.28        15.65         3.22         2.56        79.00        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       70.88        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        81.83        24.49        31.00        63.32        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        63.39        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK 
       41.00        52.96        26.50        23.90        20.38         5.85 
TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
        2.37        16.96         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       51.32        27.25        50.79         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       42.35        44.81        23.05        32.91         4.90        35.93 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
       20.12        90.84        26.66        72.56        37.74        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       55.63        37.55        66.05         7.36        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       69.93        91.99       113.82        82.85        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 
       55.69        49.58        17.69        25.81        31.53        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       25.08       114.15        33.17        74.73       122.83        33.99 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       63.35        55.00        45.63        72.07        53.98        55.50 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       28.14        26.14        38.60        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.82        36.79        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
        0.16        12.03        12.33        12.95        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.53        12.36        12.95        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       15.22        14.73        21.83        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       55.63        53.92         9.04        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.03        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
       19.99         6.15        13.94        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        17.52 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
        7.40       109.87        59.57       216.76        79.10        83.34 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XN TCGA-GM-A4E0 
      101.62       110.50        38.20        43.73        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       13.55        18.12         2.60        62.47        11.84        11.57 
TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 
       32.75        17.06        15.32        14.70        14.47        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       22.39         2.10        36.30        58.52        31.99        58.62 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 
       34.92        36.36        28.87        24.72        22.32        20.38 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD 
       26.70        23.47        65.62        41.92        47.01        64.21 
TCGA-PE-A5DE 
       86.96 

  FBXW7 MUTATED FBXW7 WILD-TYPE 
           0.33            0.03 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
          93.83          282.90 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
          21.04           30.97 
[1] "0.3 - 93.8 (21.0)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "1.7"
D55V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  FBXW7 MUTATED         0        0        0        0         9         2
  FBXW7 WILD-TYPE      88       71        6        4       317       225
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  FBXW7 MUTATED           0          2          0          2        0       0
  FBXW7 WILD-TYPE         2        135         24         55       15      12
D55V3, multiclass
            clus
vv           FBXW7 MUTATED FBXW7 WILD-TYPE
  STAGE I                0              88
  STAGE IA               0              71
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              9             317
  STAGE IIB              2             225
  STAGE III              0               2
  STAGE IIIA             2             135
  STAGE IIIB             0              24
  STAGE IIIC             2              55
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  FBXW7 MUTATED     1  13   1   0
  FBXW7 WILD-TYPE 256 551 119  35
D55V4, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  T1             1             256
  T2            13             551
  T3             1             119
  T4             0              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  FBXW7 MUTATED     8   4   1   2
  FBXW7 WILD-TYPE 454 321 106  66
D55V5, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  N0             8             454
  N1             4             321
  N2             1             106
  N3             2              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V6, binary
                 cls
clus                0   1
  FBXW7 MUTATED    13   0
  FBXW7 WILD-TYPE 829  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     13    0
  FBXW7 WILD-TYPE  829   16
   clus
vv  FBXW7 MUTATED FBXW7 WILD-TYPE
  0            13             829
  1             0              16
[1] 2 2
[1] FALSE
D55V7, binary
                 cls
clus                0   1
  FBXW7 MUTATED    15   0
  FBXW7 WILD-TYPE 953   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     15    0
  FBXW7 WILD-TYPE  953    9
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  FEMALE            15             953
  MALE               0               9
[1] 2 2
[1] FALSE
D55V8, binary
                 cls
clus                0   1
  FBXW7 MUTATED     5   9
  FBXW7 WILD-TYPE 382 493
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED      5    9
  FBXW7 WILD-TYPE  382  493
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  NO              5             382
  YES             9             493
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  FBXW7 MUTATED                            0                            11
  FBXW7 WILD-TYPE                          1                           700
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  FBXW7 MUTATED                                4                   0
  FBXW7 WILD-TYPE                            168                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  FBXW7 MUTATED                       0                                0
  FBXW7 WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  FBXW7 MUTATED                    0              0
  FBXW7 WILD-TYPE                 14             40
D55V9, multiclass
                                  clus
vv                                 FBXW7 MUTATED FBXW7 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA               11             700
  INFILTRATING LOBULAR CARCINOMA               4             168
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               0              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  FBXW7 MUTATED                                  0     0
  FBXW7 WILD-TYPE                                1    57
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  FBXW7 MUTATED                           5     7
  FBXW7 WILD-TYPE                       116   698
D55V11, multiclass
                                  clus
vv                                 FBXW7 MUTATED FBXW7 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              57
  BLACK OR AFRICAN AMERICAN                    5             116
  WHITE                                        7             698
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V12, binary
                 cls
clus                0   1
  FBXW7 MUTATED     1  11
  FBXW7 WILD-TYPE  33 761
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED      1   11
  FBXW7 WILD-TYPE   33  761
                        clus
vv                       FBXW7 MUTATED FBXW7 WILD-TYPE
  HISPANIC OR LATINO                 1              33
  NOT HISPANIC OR LATINO            11             761
[1] 2 2
[1] FALSE

Clustering(56) Variable = FRMPD2 MUTATION ANALYSIS
D56V1, survival
                  sevent
clus2                0   1
  FRMPD2 MUTATED    10   3
  FRMPD2 WILD-TYPE 816 135
  FRMPD2 MUTATED FRMPD2 WILD-TYPE 
              13              951 
  FRMPD2 MUTATED FRMPD2 WILD-TYPE 
               3              135 
$`FRMPD2 MUTATED`
TCGA-AC-A3W6 TCGA-A8-A092 TCGA-A8-A0A6 TCGA-AC-A2QJ TCGA-AC-A3TM TCGA-AN-A046 
       19.79        30.97        21.04        14.66        25.05         0.33 
TCGA-AN-A0AK TCGA-AO-A129 TCGA-AO-A12E TCGA-AR-A256 TCGA-BH-A1F2 TCGA-D8-A1XQ 
        7.36       108.03        70.42        93.83        31.53        16.41 
TCGA-E2-A10C 
       40.11 

$`FRMPD2 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A5EI 
        1.02        49.05        45.07        29.98        16.57        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       35.47        30.61        37.45        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J 
       31.73        20.19        25.15        29.56        23.74        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA 
       11.34        10.59        10.29        13.41        14.70        14.93 
TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       13.74        14.66        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       12.10        10.72        13.02        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        33.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A095 
       31.00         0.99       112.08        43.00        40.01        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 
       14.01        12.00        19.04        13.02         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       17.03        38.04        19.23        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN 
       32.45         6.48        16.31        14.83        22.19        14.99 
TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y 
       15.48        23.24        24.79        16.80        14.96        17.42 
TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.33         0.23         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        1.71         9.96         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.53         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        5.59        80.28        61.35        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       68.75        69.83        58.95        44.42        32.78        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       52.18        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        65.10 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       62.04        55.33        71.80       115.27       113.62       108.72 
TCGA-AO-A128 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G 
      106.78       102.31        98.27        82.68        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      112.77        97.84       105.27       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM 
       71.05       166.42        20.25        86.53        54.21        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       38.17        39.39        40.54        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA 
       77.62       143.38       281.29        32.58        11.90       275.87 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      129.57        50.70        65.52       146.50       112.37       233.62 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
       18.77       127.33        84.59       165.76       129.07       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO 
      255.68        68.45       212.25       234.28       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.28        89.46       282.90       169.51        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.46        18.35        21.01       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.55        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        74.99        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 
       37.74        39.55        39.16        70.22        84.13        51.58 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       51.68        37.22        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        85.87        77.75        49.94        77.95        74.14 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       41.75        46.39        89.06        90.97        81.73        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP 
       67.10        38.01        29.98        13.91        78.28        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        79.00        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        81.83 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        63.32        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       63.39        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       26.50        23.90        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       17.69        25.81        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 
       83.31        57.83       130.16        36.82        36.79        20.12 
TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L 
       10.52       110.60        20.88        18.64        23.51        11.93 
TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U 
       11.77        11.77        12.66        11.77        12.66        12.66 
TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 
       12.66        12.66        12.66        48.53        12.56        12.16 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       13.51        12.59        12.59        12.92        12.46        12.49 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.95        15.45        16.87        16.70         0.03         9.76 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z 
       24.56        14.43        33.99        12.95        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XR 
       21.83        14.50        19.92        17.69        55.30        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       16.31        16.64        12.99        15.16        43.04        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       15.32        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       16.04        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V 
       13.48        17.06         1.61        10.09        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 
       12.26        33.37        18.51        21.67        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10E TCGA-E2-A10F 
       27.52        46.59        40.41        37.51        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       47.15        44.68        40.96        38.24        38.60        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       75.98        43.33        34.26        32.02        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       18.51        63.62        69.96        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        25.05        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       20.58        11.05        19.56        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       76.57        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       37.25        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        52.73        34.55 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 
       43.56         8.28        30.61        34.92        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        34.16        36.20        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       41.62        35.77        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       19.99         6.15        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.52         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.84        11.57        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       47.01        64.21        86.96 

  FRMPD2 MUTATED FRMPD2 WILD-TYPE 
            0.33             0.03 
  FRMPD2 MUTATED FRMPD2 WILD-TYPE 
          108.03           282.90 
  FRMPD2 MUTATED FRMPD2 WILD-TYPE 
           25.05            31.00 
[1] "0.3 - 108.0 (25.1)" "0.0 - 282.9 (31.0)"
[1] "hr=" "2.1"
D56V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  FRMPD2 MUTATED         0        0        0        0         4         3
  FRMPD2 WILD-TYPE      88       71        6        4       322       224
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  FRMPD2 MUTATED           0          3          2          1        0       0
  FRMPD2 WILD-TYPE         2        134         22         56       15      12
D56V3, multiclass
            clus
vv           FRMPD2 MUTATED FRMPD2 WILD-TYPE
  STAGE I                 0               88
  STAGE IA                0               71
  STAGE IB                0                6
  STAGE II                0                4
  STAGE IIA               4              322
  STAGE IIB               3              224
  STAGE III               0                2
  STAGE IIIA              3              134
  STAGE IIIB              2               22
  STAGE IIIC              1               56
  STAGE IV                0               15
  STAGE X                 0               12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  FRMPD2 MUTATED     0   8   3   2
  FRMPD2 WILD-TYPE 257 556 117  33
D56V4, multiclass
    clus
vv   FRMPD2 MUTATED FRMPD2 WILD-TYPE
  T1              0              257
  T2              8              556
  T3              3              117
  T4              2               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  FRMPD2 MUTATED     6   5   1   1
  FRMPD2 WILD-TYPE 456 320 106  67
D56V5, multiclass
    clus
vv   FRMPD2 MUTATED FRMPD2 WILD-TYPE
  N0              6              456
  N1              5              320
  N2              1              106
  N3              1               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V6, binary
                  cls
clus                 0   1
  FRMPD2 MUTATED    12   0
  FRMPD2 WILD-TYPE 830  16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FRMPD2 MUTATED     12    0
  FRMPD2 WILD-TYPE  830   16
   clus
vv  FRMPD2 MUTATED FRMPD2 WILD-TYPE
  0             12              830
  1              0               16
[1] 2 2
[1] FALSE
D56V7, binary
                  cls
clus                 0   1
  FRMPD2 MUTATED    13   0
  FRMPD2 WILD-TYPE 955   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FRMPD2 MUTATED     13    0
  FRMPD2 WILD-TYPE  955    9
        clus
vv       FRMPD2 MUTATED FRMPD2 WILD-TYPE
  FEMALE             13              955
  MALE                0                9
[1] 2 2
[1] FALSE
D56V8, binary
                  cls
clus                 0   1
  FRMPD2 MUTATED     5   7
  FRMPD2 WILD-TYPE 382 495
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FRMPD2 MUTATED      5    7
  FRMPD2 WILD-TYPE  382  495
     clus
vv    FRMPD2 MUTATED FRMPD2 WILD-TYPE
  NO               5              382
  YES              7              495
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  FRMPD2 MUTATED                            0                             8
  FRMPD2 WILD-TYPE                          1                           703
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  FRMPD2 MUTATED                                4                   0
  FRMPD2 WILD-TYPE                            168                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  FRMPD2 MUTATED                       1                                0
  FRMPD2 WILD-TYPE                     5                               27
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  FRMPD2 MUTATED                    0              0
  FRMPD2 WILD-TYPE                 14             40
D56V9, multiclass
                                  clus
vv                                 FRMPD2 MUTATED FRMPD2 WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA                 8              703
  INFILTRATING LOBULAR CARCINOMA                4              168
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         1                5
  MIXED HISTOLOGY (PLEASE SPECIFY)              0               27
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                                0               40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  FRMPD2 MUTATED                                  0     0
  FRMPD2 WILD-TYPE                                1    57
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  FRMPD2 MUTATED                           0    11
  FRMPD2 WILD-TYPE                       121   694
D56V11, multiclass
                                  clus
vv                                 FRMPD2 MUTATED FRMPD2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               57
  BLACK OR AFRICAN AMERICAN                     0              121
  WHITE                                        11              694
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V12, binary
                  cls
clus                 0   1
  FRMPD2 MUTATED     1   9
  FRMPD2 WILD-TYPE  33 763
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FRMPD2 MUTATED      1    9
  FRMPD2 WILD-TYPE   33  763
                        clus
vv                       FRMPD2 MUTATED FRMPD2 WILD-TYPE
  HISPANIC OR LATINO                  1               33
  NOT HISPANIC OR LATINO              9              763
[1] 2 2
[1] FALSE

Clustering(57) Variable = ZFP36L2 MUTATION ANALYSIS
D57V1, survival
                   sevent
clus2                 0   1
  ZFP36L2 MUTATED     7   0
  ZFP36L2 WILD-TYPE 819 138
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                7               957 
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                0               138 
$`ZFP36L2 MUTATED`
TCGA-AR-A1AQ TCGA-BH-A0HW TCGA-BH-A0W7 TCGA-D8-A1J8 TCGA-E2-A10C TCGA-EW-A1PA 
       99.32        51.32        44.81        14.17        40.11        18.90 
TCGA-JL-A3YX 
       11.57 

$`ZFP36L2 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U 
       12.00        32.05         9.99        10.98         8.98        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        18.05        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       38.01        28.96        19.96        12.00        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       31.00        31.00         0.99       112.08        43.00        40.01 
TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       30.97        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       50.04        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       21.04         0.99        27.02        17.03        38.04        19.23 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72        22.26        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 
       16.31        14.83        22.19        25.05        14.99        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X 
       23.24        24.79        16.80        14.96        17.42         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.23         0.33         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        1.71         9.96         7.36         7.46         0.16         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        0.33         0.33         6.44         5.65         7.96         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW 
        7.59         7.17         6.90         7.04         0.33         0.36 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN 
        0.33         0.33         0.33         0.53         5.36         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU 
       12.33         0.30         0.33         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O 
        5.33         5.59        80.28        61.35        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       95.70        68.75        69.83        58.95        44.42        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 
       21.40        52.18        26.04        37.48        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE 
       53.03        21.53        50.70        50.86        72.00        76.77 
TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 
       65.10        62.04        55.33        71.80       115.27       113.62 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
      108.72       106.78       108.03       102.31        98.27        82.68 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       70.42        60.56        53.88        40.57        20.45        97.08 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 
       82.62        11.51        24.79        26.93       130.09        15.62 
TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 
       32.52        84.10        23.31        64.83        55.86        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      133.22        83.87       134.14       125.16       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AS 
      103.86        97.68        96.00        86.07        93.90        37.81 
TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       41.82        94.29        61.28        86.53        86.43        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
      160.90        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28       112.77        97.84       105.27       102.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
      105.30        50.96        98.76        98.66        89.00        99.62 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       93.30        85.64        71.05        93.83       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       86.53        54.21        63.62        38.17        39.39        40.54 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       33.30        38.96        10.59        77.62       143.38       281.29 
TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
       32.58        11.90       275.87       129.57        50.70        65.52 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      146.50       112.37       233.62        18.77       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH 
      165.76       129.07       140.88       255.68        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
      234.28       263.28       162.05       102.77       140.28        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      282.90       169.51        97.48       188.68        79.46        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       21.01       113.79       206.86       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       68.94        58.55        43.59       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
      170.17        37.87         7.07        85.35        74.99        68.12 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       18.84       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 
       25.55        63.09        81.44        37.74        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       70.22        84.13        51.58        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       18.21        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        81.73        77.98        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        78.28        15.65         3.22         2.56        79.00 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        70.88        16.27         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
        9.63        44.81        81.83        24.49        31.00        63.32 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        63.39        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI 
       23.08        41.00        52.96        26.50        23.90        20.38 
TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
        5.85         2.37        16.96         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       12.89        27.25        50.79         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       42.35        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07        53.98        55.50        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       26.14        38.60        83.31        57.83       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.79        20.12        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
        0.16        12.03        12.33        12.95        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.53        12.36        12.95        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       13.48        19.20        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02        11.15        48.23        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       40.24         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG 
        7.86        19.99         6.15        13.94        10.52        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA 
       17.49        17.52         7.40       109.87        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
       79.10        83.34        70.85        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      115.69       106.06       101.62       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       69.30        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       62.47        11.84        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       47.01        64.21        86.96 

  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
            11.57              0.03 
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
            99.32            282.90 
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
            40.11             30.61 
[1] "11.6 - 99.3 (40.1)" "0.0 - 282.9 (30.6)"
[1] "hr="     "3300000"
D57V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  ZFP36L2 MUTATED         1        1        0        0         2         3
  ZFP36L2 WILD-TYPE      87       70        6        4       324       224
                   vv
clus                STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  ZFP36L2 MUTATED           0          0          0          0        0       0
  ZFP36L2 WILD-TYPE         2        137         24         57       15      12
D57V3, multiclass
            clus
vv           ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  STAGE I                  1                87
  STAGE IA                 1                70
  STAGE IB                 0                 6
  STAGE II                 0                 4
  STAGE IIA                2               324
  STAGE IIB                3               224
  STAGE III                0                 2
  STAGE IIIA               0               137
  STAGE IIIB               0                24
  STAGE IIIC               0                57
  STAGE IV                 0                15
  STAGE X                  0                12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                 T1  T2  T3  T4
  ZFP36L2 MUTATED     2   5   0   0
  ZFP36L2 WILD-TYPE 255 559 120  35
D57V4, multiclass
    clus
vv   ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  T1               2               255
  T2               5               559
  T3               0               120
  T4               0                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                 N0  N1  N2  N3
  ZFP36L2 MUTATED     4   3   0   0
  ZFP36L2 WILD-TYPE 458 322 107  68
D57V5, multiclass
    clus
vv   ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  N0               4               458
  N1               3               322
  N2               0               107
  N3               0                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V6, binary
                   cls
clus                  0   1
  ZFP36L2 MUTATED     7   0
  ZFP36L2 WILD-TYPE 835  16
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZFP36L2 MUTATED      7    0
  ZFP36L2 WILD-TYPE  835   16
   clus
vv  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  0               7               835
  1               0                16
[1] 2 2
[1] FALSE
D57V7, binary
                   cls
clus                  0   1
  ZFP36L2 MUTATED     7   0
  ZFP36L2 WILD-TYPE 961   9
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZFP36L2 MUTATED      7    0
  ZFP36L2 WILD-TYPE  961    9
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  FEMALE               7               961
  MALE                 0                 9
[1] 2 2
[1] FALSE
D57V8, binary
                   cls
clus                  0   1
  ZFP36L2 MUTATED     2   5
  ZFP36L2 WILD-TYPE 385 497
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZFP36L2 MUTATED      2    5
  ZFP36L2 WILD-TYPE  385  497
     clus
vv    ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  NO                2               385
  YES               5               497
[1] 2 2
[1] FALSE
                   vv
clus                INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  ZFP36L2 MUTATED                            0                             6
  ZFP36L2 WILD-TYPE                          1                           705
                   vv
clus                INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  ZFP36L2 MUTATED                                1                   0
  ZFP36L2 WILD-TYPE                            171                   5
                   vv
clus                METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  ZFP36L2 MUTATED                       0                                0
  ZFP36L2 WILD-TYPE                     6                               27
                   vv
clus                MUCINOUS CARCINOMA OTHER, SPECIFY
  ZFP36L2 MUTATED                    0              0
  ZFP36L2 WILD-TYPE                 14             40
D57V9, multiclass
                                  clus
vv                                 ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  INFILTRATING CARCINOMA NOS                     0                 1
  INFILTRATING DUCTAL CARCINOMA                  6               705
  INFILTRATING LOBULAR CARCINOMA                 1               171
  MEDULLARY CARCINOMA                            0                 5
  METAPLASTIC CARCINOMA                          0                 6
  MIXED HISTOLOGY (PLEASE SPECIFY)               0                27
  MUCINOUS CARCINOMA                             0                14
  OTHER, SPECIFY                                 0                40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V10, continuous
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ZFP36L2 MUTATED                                  0     2
  ZFP36L2 WILD-TYPE                                1    55
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  ZFP36L2 MUTATED                           0     5
  ZFP36L2 WILD-TYPE                       121   700
D57V11, multiclass
                                  clus
vv                                 ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          2                55
  BLACK OR AFRICAN AMERICAN                      0               121
  WHITE                                          5               700
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V12, binary
                   cls
clus                  0   1
  ZFP36L2 MUTATED     1   5
  ZFP36L2 WILD-TYPE  33 767
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZFP36L2 MUTATED      1    5
  ZFP36L2 WILD-TYPE   33  767
                        clus
vv                       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  HISPANIC OR LATINO                   1                33
  NOT HISPANIC OR LATINO               5               767
[1] 2 2
[1] FALSE

Clustering(58) Variable = TPP2 MUTATION ANALYSIS
D58V1, survival
                sevent
clus2              0   1
  TPP2 MUTATED     6   1
  TPP2 WILD-TYPE 820 137
  TPP2 MUTATED TPP2 WILD-TYPE 
             7            957 
  TPP2 MUTATED TPP2 WILD-TYPE 
             1            137 
$`TPP2 MUTATED`
TCGA-AN-A03Y TCGA-AN-A046 TCGA-B6-A402 TCGA-D8-A1JT TCGA-E2-A15I TCGA-EW-A1PB 
        0.33         0.33        74.99        13.32        55.63        19.99 
TCGA-GM-A2D9 
       59.57 

$`TPP2 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U 
       12.00        32.05         9.99        10.98         8.98        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        18.05        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       38.01        28.96        19.96        12.00        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       31.00        31.00         0.99       112.08        43.00        40.01 
TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       30.97        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       50.04        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       21.04         0.99        27.02        17.03        38.04        19.23 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72        22.26        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 
       16.31        14.83        22.19        25.05        14.99        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X 
       23.24        24.79        16.80        14.96        17.42         0.33 
TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.23         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27       113.62       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.03       102.31        98.27        82.68        70.42        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       23.31        64.83        55.86        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      134.14       125.16       108.36       101.00       103.86        97.68 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT 
       96.00        86.07        93.90        99.32        37.81        41.82 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      104.28       112.77        97.84       105.27       102.84       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
       50.96        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       85.64        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       11.90       275.87       129.57        50.70        65.52       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      263.28       162.05       102.77       140.28        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      169.51        97.48       188.68        79.46        18.35        21.01 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       58.55        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
       37.87         7.07        85.35        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       52.96        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07        53.98        55.50        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       26.14        38.60        83.31        57.83       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.79        20.12        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
        0.16        12.03        12.33        12.95        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.53        12.36        12.95        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       21.01        12.20        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02        11.15        48.23        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       40.24         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG 
        7.86        18.90         6.15        13.94        10.52        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.49        17.52         7.40       109.87       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.84        11.57        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       47.01        64.21        86.96 

  TPP2 MUTATED TPP2 WILD-TYPE 
          0.33           0.03 
  TPP2 MUTATED TPP2 WILD-TYPE 
         74.99         282.90 
  TPP2 MUTATED TPP2 WILD-TYPE 
         19.99          30.97 
[1] "0.3 - 75.0 (20.0)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "1.4"
D58V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  TPP2 MUTATED         2        0        0        0         5         0
  TPP2 WILD-TYPE      86       71        6        4       321       227
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  TPP2 MUTATED           0          1          0          0        0       0
  TPP2 WILD-TYPE         2        136         24         57       15      12
D58V3, multiclass
            clus
vv           TPP2 MUTATED TPP2 WILD-TYPE
  STAGE I               2             86
  STAGE IA              0             71
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             5            321
  STAGE IIB             0            227
  STAGE III             0              2
  STAGE IIIA            1            136
  STAGE IIIB            0             24
  STAGE IIIC            0             57
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  TPP2 MUTATED     2   5   1   0
  TPP2 WILD-TYPE 255 559 119  35
D58V4, multiclass
    clus
vv   TPP2 MUTATED TPP2 WILD-TYPE
  T1            2            255
  T2            5            559
  T3            1            119
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  TPP2 MUTATED     7   1   0   0
  TPP2 WILD-TYPE 455 324 107  68
D58V5, multiclass
    clus
vv   TPP2 MUTATED TPP2 WILD-TYPE
  N0            7            455
  N1            1            324
  N2            0            107
  N3            0             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V6, binary
                cls
clus               0   1
  TPP2 MUTATED     7   0
  TPP2 WILD-TYPE 835  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPP2 MUTATED      7    0
  TPP2 WILD-TYPE  835   16
   clus
vv  TPP2 MUTATED TPP2 WILD-TYPE
  0            7            835
  1            0             16
[1] 2 2
[1] FALSE
D58V7, binary
                cls
clus               0   1
  TPP2 MUTATED     8   0
  TPP2 WILD-TYPE 960   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPP2 MUTATED      8    0
  TPP2 WILD-TYPE  960    9
        clus
vv       TPP2 MUTATED TPP2 WILD-TYPE
  FEMALE            8            960
  MALE              0              9
[1] 2 2
[1] FALSE
D58V8, binary
                cls
clus               0   1
  TPP2 MUTATED     5   2
  TPP2 WILD-TYPE 382 500
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPP2 MUTATED      5    2
  TPP2 WILD-TYPE  382  500
     clus
vv    TPP2 MUTATED TPP2 WILD-TYPE
  NO             5            382
  YES            2            500
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  TPP2 MUTATED                            0                             7
  TPP2 WILD-TYPE                          1                           704
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  TPP2 MUTATED                                0                   0
  TPP2 WILD-TYPE                            172                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  TPP2 MUTATED                       0                                0
  TPP2 WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  TPP2 MUTATED                    0              1
  TPP2 WILD-TYPE                 14             39
D58V9, multiclass
                                  clus
vv                                 TPP2 MUTATED TPP2 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA               7            704
  INFILTRATING LOBULAR CARCINOMA              0            172
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              1             39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  TPP2 MUTATED                                  0     1
  TPP2 WILD-TYPE                                1    56
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  TPP2 MUTATED                           2     5
  TPP2 WILD-TYPE                       119   700
D58V11, multiclass
                                  clus
vv                                 TPP2 MUTATED TPP2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       1             56
  BLACK OR AFRICAN AMERICAN                   2            119
  WHITE                                       5            700
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V12, binary
                cls
clus               0   1
  TPP2 MUTATED     0   8
  TPP2 WILD-TYPE  34 764
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPP2 MUTATED      0    8
  TPP2 WILD-TYPE   34  764
                        clus
vv                       TPP2 MUTATED TPP2 WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO            8            764
[1] 2 2
[1] FALSE

Clustering(59) Variable = C17ORF95 MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                  0   1
  C17ORF95 MUTATED     4   1
  C17ORF95 WILD-TYPE 822 137
  C17ORF95 MUTATED C17ORF95 WILD-TYPE 
                 5                959 
  C17ORF95 MUTATED C17ORF95 WILD-TYPE 
                 1                137 
$`C17ORF95 MUTATED`
TCGA-A2-A0SY TCGA-A8-A08R TCGA-AC-A23H TCGA-AN-A046 TCGA-E2-A14W 
       44.28         0.99         5.72         0.33        32.02 

$`C17ORF95 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       50.43        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       35.47        30.61        37.45        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J 
       31.73        20.19        25.15        29.56        23.74        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA 
       11.34        10.59        10.29        13.41        14.70        14.93 
TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       13.74        14.66        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       12.10        10.72        13.02        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        33.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
       31.00       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH 
       25.05        14.99        15.48        23.24        24.79        16.80 
TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 
       14.96        17.42         0.33         0.33         0.23         0.62 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        2.96         1.78         1.71         9.96         7.36         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        0.16         0.33         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        7.96         7.00         7.59         7.17         6.90         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        0.33         0.36         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        69.83        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       44.42        32.78        21.40        52.18        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       72.00        76.77        65.10        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      115.27       113.62       108.72       106.78       108.03       102.31 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        82.68        70.42        60.56        53.88        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J 
       20.45        97.08        82.62        11.51        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX 
      130.09        15.62        32.52        84.10        23.31        64.83 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH 
       55.86        65.36       133.22        83.87       134.14       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO 
      108.36       101.00       103.86        97.68        96.00        86.07 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV 
       93.90        99.32        37.81        41.82        94.29        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L 
       86.53        86.43        33.73       160.90        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
      120.33        99.78       118.59         2.76       104.28       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       97.84       105.27       102.84       105.30        50.96        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       98.66        89.00        99.62        93.30        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM 
       93.83       166.42        20.25        86.53        54.21        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       38.17        39.39        40.54        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA 
       77.62       143.38       281.29        32.58        11.90       275.87 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      129.57        50.70        65.52       146.50       112.37       233.62 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
       18.77       127.33        84.59       165.76       129.07       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO 
      255.68        68.45       212.25       234.28       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.28        89.46       282.90       169.51        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.46        18.35        21.01       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.55        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        74.99        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 
       37.74        39.55        39.16        70.22        84.13        51.58 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       51.68        37.22        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        85.87        77.75        49.94        77.95        74.14 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       41.75        46.39        89.06        90.97        81.73        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP 
       67.10        38.01        29.98        13.91        78.28        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        79.00        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        81.83 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        63.32        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       63.39        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       26.50        23.90        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       17.69        25.81        31.53        97.48        25.08       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.83        33.99        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       110.60        20.88        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.49        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02        11.15        48.23        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       40.24         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       115.69       106.06       101.62       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        58.52        31.99        58.62        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       65.62        41.92        47.01        64.21        86.96 

  C17ORF95 MUTATED C17ORF95 WILD-TYPE 
              0.33               0.03 
  C17ORF95 MUTATED C17ORF95 WILD-TYPE 
             44.28             282.90 
  C17ORF95 MUTATED C17ORF95 WILD-TYPE 
              5.72              30.97 
[1] "0.3 - 44.3 (5.7)"   "0.0 - 282.9 (31.0)"
[1] "hr=" "4.8"
D59V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  C17ORF95 MUTATED         0        0        0        0         3         1
  C17ORF95 WILD-TYPE      88       71        6        4       323       226
                    vv
clus                 STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  C17ORF95 MUTATED           0          1          0          0        0
  C17ORF95 WILD-TYPE         2        136         24         57       15
                    vv
clus                 STAGE X
  C17ORF95 MUTATED         0
  C17ORF95 WILD-TYPE      12
D59V3, multiclass
            clus
vv           C17ORF95 MUTATED C17ORF95 WILD-TYPE
  STAGE I                   0                 88
  STAGE IA                  0                 71
  STAGE IB                  0                  6
  STAGE II                  0                  4
  STAGE IIA                 3                323
  STAGE IIB                 1                226
  STAGE III                 0                  2
  STAGE IIIA                1                136
  STAGE IIIB                0                 24
  STAGE IIIC                0                 57
  STAGE IV                  0                 15
  STAGE X                   0                 12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                  T1  T2  T3  T4
  C17ORF95 MUTATED     0   4   1   0
  C17ORF95 WILD-TYPE 257 560 119  35
D59V4, multiclass
    clus
vv   C17ORF95 MUTATED C17ORF95 WILD-TYPE
  T1                0                257
  T2                4                560
  T3                1                119
  T4                0                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                  N0  N1  N2  N3
  C17ORF95 MUTATED     2   2   0   0
  C17ORF95 WILD-TYPE 460 323 107  68
D59V5, multiclass
    clus
vv   C17ORF95 MUTATED C17ORF95 WILD-TYPE
  N0                2                460
  N1                2                323
  N2                0                107
  N3                0                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V6, binary
                    cls
clus                   0   1
  C17ORF95 MUTATED     5   0
  C17ORF95 WILD-TYPE 837  16
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C17ORF95 MUTATED      5    0
  C17ORF95 WILD-TYPE  837   16
   clus
vv  C17ORF95 MUTATED C17ORF95 WILD-TYPE
  0                5                837
  1                0                 16
[1] 2 2
[1] FALSE
D59V7, binary
                    cls
clus                   0   1
  C17ORF95 MUTATED     4   1
  C17ORF95 WILD-TYPE 964   8
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C17ORF95 MUTATED      4    1
  C17ORF95 WILD-TYPE  964    8
        clus
vv       C17ORF95 MUTATED C17ORF95 WILD-TYPE
  FEMALE                4                964
  MALE                  1                  8
[1] 2 2
[1] FALSE
D59V8, binary
                    cls
clus                   0   1
  C17ORF95 MUTATED     3   1
  C17ORF95 WILD-TYPE 384 501
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C17ORF95 MUTATED      3    1
  C17ORF95 WILD-TYPE  384  501
     clus
vv    C17ORF95 MUTATED C17ORF95 WILD-TYPE
  NO                 3                384
  YES                1                501
[1] 2 2
[1] FALSE
                    vv
clus                 INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  C17ORF95 MUTATED                            0                             4
  C17ORF95 WILD-TYPE                          1                           707
                    vv
clus                 INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  C17ORF95 MUTATED                                1                   0
  C17ORF95 WILD-TYPE                            171                   5
                    vv
clus                 METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  C17ORF95 MUTATED                       0                                0
  C17ORF95 WILD-TYPE                     6                               27
                    vv
clus                 MUCINOUS CARCINOMA OTHER, SPECIFY
  C17ORF95 MUTATED                    0              0
  C17ORF95 WILD-TYPE                 14             40
D59V9, multiclass
                                  clus
vv                                 C17ORF95 MUTATED C17ORF95 WILD-TYPE
  INFILTRATING CARCINOMA NOS                      0                  1
  INFILTRATING DUCTAL CARCINOMA                   4                707
  INFILTRATING LOBULAR CARCINOMA                  1                171
  MEDULLARY CARCINOMA                             0                  5
  METAPLASTIC CARCINOMA                           0                  6
  MIXED HISTOLOGY (PLEASE SPECIFY)                0                 27
  MUCINOUS CARCINOMA                              0                 14
  OTHER, SPECIFY                                  0                 40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V10, continuous
                    vv
clus                 AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  C17ORF95 MUTATED                                  0     0
  C17ORF95 WILD-TYPE                                1    57
                    vv
clus                 BLACK OR AFRICAN AMERICAN WHITE
  C17ORF95 MUTATED                           0     4
  C17ORF95 WILD-TYPE                       121   701
D59V11, multiclass
                                  clus
vv                                 C17ORF95 MUTATED C17ORF95 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                0                  1
  ASIAN                                           0                 57
  BLACK OR AFRICAN AMERICAN                       0                121
  WHITE                                           4                701
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V12, binary
                    cls
clus                   0   1
  C17ORF95 MUTATED     0   4
  C17ORF95 WILD-TYPE  34 768
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C17ORF95 MUTATED      0    4
  C17ORF95 WILD-TYPE   34  768
                        clus
vv                       C17ORF95 MUTATED C17ORF95 WILD-TYPE
  HISPANIC OR LATINO                    0                 34
  NOT HISPANIC OR LATINO                4                768
[1] 2 2
[1] FALSE

Clustering(60) Variable = RUFY1 MUTATION ANALYSIS
D60V1, survival
                 sevent
clus2               0   1
  RUFY1 MUTATED     3   2
  RUFY1 WILD-TYPE 823 136
  RUFY1 MUTATED RUFY1 WILD-TYPE 
              5             959 
  RUFY1 MUTATED RUFY1 WILD-TYPE 
              2             136 
$`RUFY1 MUTATED`
TCGA-AN-A046 TCGA-BH-A1EO TCGA-BH-A1F8 TCGA-C8-A1HJ TCGA-D8-A1J8 
        0.33        91.99        25.08         0.16        14.17 

$`RUFY1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U 
       12.00        32.05         9.99        10.98         8.98        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        18.05        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       38.01        28.96        19.96        12.00        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       31.00        31.00         0.99       112.08        43.00        40.01 
TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       30.97        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       50.04        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       21.04         0.99        27.02        17.03        38.04        19.23 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72        22.26        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 
       16.31        14.83        22.19        25.05        14.99        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X 
       23.24        24.79        16.80        14.96        17.42         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.33         0.23         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        9.96         7.36         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.53         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        5.59        80.28        61.35        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       68.75        69.83        58.95        44.42        32.78        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       52.18        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        65.10 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       62.04        55.33        71.80       115.27       113.62       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03       102.31        98.27        82.68        70.42 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       60.56        53.88        40.57        20.45        97.08        82.62 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       11.51        24.79        26.93       130.09        15.62        32.52 
TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 
       84.10        23.31        64.83        55.86        65.36       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       134.14       125.16       108.36       101.00       103.86 
TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS 
       97.68        96.00        86.07        93.90        99.32        37.81 
TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       41.82        94.29        61.28        86.53        86.43        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
      160.90        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28       112.77        97.84       105.27       102.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
      105.30        50.96        98.76        98.66        89.00        99.62 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       93.30        85.64        71.05        93.83       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       86.53        54.21        63.62        38.17        39.39        40.54 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       33.30        38.96        10.59        77.62       143.38       281.29 
TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
       32.58        11.90       275.87       129.57        50.70        65.52 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      146.50       112.37       233.62        18.77       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH 
      165.76       129.07       140.88       255.68        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
      234.28       263.28       162.05       102.77       140.28        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      282.90       169.51        97.48       188.68        79.46        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       21.01       113.79       206.86       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       68.94        58.55        43.59       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
      170.17        37.87         7.07        85.35        74.99        68.12 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       18.84       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 
       25.55        63.09        81.44        37.74        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       70.22        84.13        51.58        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       18.21        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        81.73        77.98        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        78.28        15.65         3.22         2.56        79.00 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        70.88        16.27         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
        9.63        44.81        81.83        24.49        31.00        63.32 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        63.39        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI 
       23.08        41.00        52.96        26.50        23.90        20.38 
TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
        5.85         2.37        16.96         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
       12.89        51.32        27.25        50.79         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05        32.91         4.90 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
       35.93        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       30.28        55.63        37.55        66.05         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       51.16        69.93       113.82        82.85        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 
       55.69        49.58        17.69        25.81        31.53        97.48 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07        53.98        55.50        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       26.14        38.60        83.31        57.83       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.79        20.12        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       19.20        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02        11.15        48.23        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       40.24         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       115.69       106.06       101.62       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        58.52        31.99        58.62        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       65.62        41.92        47.01        64.21        86.96 

  RUFY1 MUTATED RUFY1 WILD-TYPE 
           0.16            0.03 
  RUFY1 MUTATED RUFY1 WILD-TYPE 
          91.99          282.90 
  RUFY1 MUTATED RUFY1 WILD-TYPE 
          14.17           31.00 
[1] "0.2 - 92.0 (14.2)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "4.8"
D60V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  RUFY1 MUTATED         0        0        0        0         3         2
  RUFY1 WILD-TYPE      88       71        6        4       323       225
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  RUFY1 MUTATED           0          0          1          0        0       0
  RUFY1 WILD-TYPE         2        137         23         57       15      12
D60V3, multiclass
            clus
vv           RUFY1 MUTATED RUFY1 WILD-TYPE
  STAGE I                0              88
  STAGE IA               0              71
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              3             323
  STAGE IIB              2             225
  STAGE III              0               2
  STAGE IIIA             0             137
  STAGE IIIB             1              23
  STAGE IIIC             0              57
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  RUFY1 MUTATED     1   3   1   1
  RUFY1 WILD-TYPE 256 561 119  34
D60V4, multiclass
    clus
vv   RUFY1 MUTATED RUFY1 WILD-TYPE
  T1             1             256
  T2             3             561
  T3             1             119
  T4             1              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  RUFY1 MUTATED     3   2   1   0
  RUFY1 WILD-TYPE 459 323 106  68
D60V5, multiclass
    clus
vv   RUFY1 MUTATED RUFY1 WILD-TYPE
  N0             3             459
  N1             2             323
  N2             1             106
  N3             0              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V6, binary
                 cls
clus                0   1
  RUFY1 MUTATED     6   0
  RUFY1 WILD-TYPE 836  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUFY1 MUTATED      6    0
  RUFY1 WILD-TYPE  836   16
   clus
vv  RUFY1 MUTATED RUFY1 WILD-TYPE
  0             6             836
  1             0              16
[1] 2 2
[1] FALSE
D60V7, binary
                 cls
clus                0   1
  RUFY1 MUTATED     6   0
  RUFY1 WILD-TYPE 962   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUFY1 MUTATED      6    0
  RUFY1 WILD-TYPE  962    9
        clus
vv       RUFY1 MUTATED RUFY1 WILD-TYPE
  FEMALE             6             962
  MALE               0               9
[1] 2 2
[1] FALSE
D60V8, binary
                 cls
clus                0   1
  RUFY1 MUTATED     2   0
  RUFY1 WILD-TYPE 385 502
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUFY1 MUTATED      2    0
  RUFY1 WILD-TYPE  385  502
     clus
vv    RUFY1 MUTATED RUFY1 WILD-TYPE
  NO              2             385
  YES             0             502
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  RUFY1 MUTATED                            0                             4
  RUFY1 WILD-TYPE                          1                           707
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  RUFY1 MUTATED                                1                   0
  RUFY1 WILD-TYPE                            171                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  RUFY1 MUTATED                       0                                1
  RUFY1 WILD-TYPE                     6                               26
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  RUFY1 MUTATED                    0              0
  RUFY1 WILD-TYPE                 14             40
D60V9, multiclass
                                  clus
vv                                 RUFY1 MUTATED RUFY1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA                4             707
  INFILTRATING LOBULAR CARCINOMA               1             171
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             1              26
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               0              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  RUFY1 MUTATED                                  0     1
  RUFY1 WILD-TYPE                                1    56
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  RUFY1 MUTATED                           0     4
  RUFY1 WILD-TYPE                       121   701
D60V11, multiclass
                                  clus
vv                                 RUFY1 MUTATED RUFY1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        1              56
  BLACK OR AFRICAN AMERICAN                    0             121
  WHITE                                        4             701
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V12, binary
                 cls
clus                0   1
  RUFY1 MUTATED     0   5
  RUFY1 WILD-TYPE  34 767
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUFY1 MUTATED      0    5
  RUFY1 WILD-TYPE   34  767
                        clus
vv                       RUFY1 MUTATED RUFY1 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO             5             767
[1] 2 2
[1] FALSE

Clustering(61) Variable = MED23 MUTATION ANALYSIS
D61V1, survival
                 sevent
clus2               0   1
  MED23 MUTATED    14   0
  MED23 WILD-TYPE 812 138
  MED23 MUTATED MED23 WILD-TYPE 
             14             950 
  MED23 MUTATED MED23 WILD-TYPE 
              0             138 
$`MED23 MUTATED`
TCGA-E2-A1BC TCGA-A1-A0SE TCGA-A2-A0D4 TCGA-A2-A0T6 TCGA-A2-A25C TCGA-A2-A3KC 
       16.47        43.43        25.22        18.90        17.19        36.23 
TCGA-A8-A07J TCGA-A8-A08B TCGA-BH-A0HA TCGA-BH-A5J0 TCGA-D8-A1JH TCGA-D8-A1XM 
       12.00        38.01        52.96        23.51        14.01        17.69 
TCGA-E9-A1R6 TCGA-GM-A3XN 
       11.15        66.38 

$`MED23 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1L8 
       89.16        10.42        21.14        14.79        50.79        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       48.10        14.27        47.24        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        39.32        18.21       143.15        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
      121.94        73.84        87.25       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12        24.79       114.81        92.48       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ 
       75.25         5.19        98.99       107.93        56.81        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0EM TCGA-A2-A0EN 
       67.33        34.55        33.76        61.58       101.72       134.40 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
       80.28       118.45        79.76        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       34.29        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 
       54.64        27.12        44.88        50.43        44.28        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T7 
       17.13         8.38        49.84        20.52        17.46        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH 
       32.55        25.28        18.21        50.47        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT 
       49.48        18.61        19.33        48.46        31.73        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       23.47        17.36        60.72        22.45        20.25        19.20 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F 
       16.47        52.47        42.44        18.15       105.34        10.59 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08C 
       45.07        18.05        36.95        13.02         0.99        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27       113.62       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.03       102.31        98.27        82.68        70.42        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       23.31        64.83        55.86        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      134.14       125.16       108.36       101.00       103.86        97.68 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT 
       96.00        86.07        93.90        99.32        37.81        41.82 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      104.28       112.77        97.84       105.27       102.84       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
       50.96        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       85.64        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       11.90       275.87       129.57        50.70        65.52       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      263.28       162.05       102.77       140.28        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      169.51        97.48       188.68        79.46        18.35        21.01 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       58.55        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 
       37.87         7.07        85.35        74.99        68.12        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
      103.63        71.15        62.93        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       63.09        81.44        37.74        39.55        39.16        70.22 
TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       84.13        51.58        51.68        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       43.53        61.51        21.70        74.89        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV 
       75.48        74.14        76.60        85.87        77.75        49.94 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 
       77.95        74.14        41.75        46.39        89.06        90.97 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       81.73        77.98        67.10        38.01        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       78.28        15.65         3.22         2.56        79.00        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       70.88        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        81.83        24.49        31.00        63.32        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        63.39        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       41.00        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07        53.98        55.50        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       26.14        38.60        83.31        57.83       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.79        20.12        10.52       110.60        20.88        18.64 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.49        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.15        18.90        12.03        53.00        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       21.83        14.50        19.92        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       16.31        16.64        12.99        15.16        43.04        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       15.32        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       16.04        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V 
       13.48        17.06         1.61        10.09        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 
       12.26        33.37        18.51        21.67        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       27.52        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.87        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        75.98        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       69.34        18.51        63.62        69.96        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       20.71        21.63        18.21        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        11.05        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       28.50        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
        3.02        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       19.99         6.15        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.52         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       11.57        32.75        17.06        15.32        14.70        14.47 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       27.91        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE 
       64.21        86.96 

  MED23 MUTATED MED23 WILD-TYPE 
          11.15            0.03 
  MED23 MUTATED MED23 WILD-TYPE 
          66.38          282.90 
  MED23 MUTATED MED23 WILD-TYPE 
         21.205          31.000 
[1] "11.2 - 66.4 (21.2)" "0.0 - 282.9 (31.0)"
[1] "hr="     "3300000"
D61V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  MED23 MUTATED         2        4        0        0         2         5
  MED23 WILD-TYPE      86       67        6        4       324       222
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  MED23 MUTATED           0          1          0          0        0       0
  MED23 WILD-TYPE         2        136         24         57       15      12
D61V3, multiclass
            clus
vv           MED23 MUTATED MED23 WILD-TYPE
  STAGE I                2              86
  STAGE IA               4              67
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              2             324
  STAGE IIB              5             222
  STAGE III              0               2
  STAGE IIIA             1             136
  STAGE IIIB             0              24
  STAGE IIIC             0              57
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  MED23 MUTATED     7   6   1   0
  MED23 WILD-TYPE 250 558 119  35
D61V4, multiclass
    clus
vv   MED23 MUTATED MED23 WILD-TYPE
  T1             7             250
  T2             6             558
  T3             1             119
  T4             0              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  MED23 MUTATED     9   4   1   0
  MED23 WILD-TYPE 453 321 106  68
D61V5, multiclass
    clus
vv   MED23 MUTATED MED23 WILD-TYPE
  N0             9             453
  N1             4             321
  N2             1             106
  N3             0              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V6, binary
                 cls
clus                0   1
  MED23 MUTATED    14   0
  MED23 WILD-TYPE 828  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MED23 MUTATED     14    0
  MED23 WILD-TYPE  828   16
   clus
vv  MED23 MUTATED MED23 WILD-TYPE
  0            14             828
  1             0              16
[1] 2 2
[1] FALSE
D61V7, binary
                 cls
clus                0   1
  MED23 MUTATED    14   0
  MED23 WILD-TYPE 954   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MED23 MUTATED     14    0
  MED23 WILD-TYPE  954    9
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  FEMALE            14             954
  MALE               0               9
[1] 2 2
[1] FALSE
D61V8, binary
                 cls
clus                0   1
  MED23 MUTATED     3  10
  MED23 WILD-TYPE 384 492
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MED23 MUTATED      3   10
  MED23 WILD-TYPE  384  492
     clus
vv    MED23 MUTATED MED23 WILD-TYPE
  NO              3             384
  YES            10             492
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  MED23 MUTATED                            0                            10
  MED23 WILD-TYPE                          1                           701
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  MED23 MUTATED                                3                   0
  MED23 WILD-TYPE                            169                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  MED23 MUTATED                       0                                1
  MED23 WILD-TYPE                     6                               26
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  MED23 MUTATED                    0              0
  MED23 WILD-TYPE                 14             40
D61V9, multiclass
                                  clus
vv                                 MED23 MUTATED MED23 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA               10             701
  INFILTRATING LOBULAR CARCINOMA               3             169
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             1              26
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               0              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MED23 MUTATED                                  0     0
  MED23 WILD-TYPE                                1    57
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  MED23 MUTATED                           3     8
  MED23 WILD-TYPE                       118   697
D61V11, multiclass
                                  clus
vv                                 MED23 MUTATED MED23 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              57
  BLACK OR AFRICAN AMERICAN                    3             118
  WHITE                                        8             697
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V12, binary
                 cls
clus                0   1
  MED23 MUTATED     0  11
  MED23 WILD-TYPE  34 761
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MED23 MUTATED      0   11
  MED23 WILD-TYPE   34  761
                        clus
vv                       MED23 MUTATED MED23 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO            11             761
[1] 2 2
[1] FALSE

Clustering(62) Variable = PAX2 MUTATION ANALYSIS
D62V1, survival
                sevent
clus2              0   1
  PAX2 MUTATED     4   0
  PAX2 WILD-TYPE 822 138
  PAX2 MUTATED PAX2 WILD-TYPE 
             4            960 
  PAX2 MUTATED PAX2 WILD-TYPE 
             0            138 
$`PAX2 MUTATED`
TCGA-AR-A24H TCGA-B6-A0IO TCGA-BH-A0BR TCGA-BH-A0E7 
      160.90       165.76        76.60        44.81 

$`PAX2 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U 
       12.00        32.05         9.99        10.98         8.98        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        18.05        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       38.01        28.96        19.96        12.00        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       31.00        31.00         0.99       112.08        43.00        40.01 
TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       30.97        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       50.04        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       21.04         0.99        27.02        17.03        38.04        19.23 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72        22.26        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 
       16.31        14.83        22.19        25.05        14.99        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X 
       23.24        24.79        16.80        14.96        17.42         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.23         0.33         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        1.71         9.96         7.36         7.46         0.16         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        0.33         0.33         6.44         5.65         7.96         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW 
        7.59         7.17         6.90         7.04         0.33         0.36 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN 
        0.33         0.33         0.33         0.53         5.36         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU 
       12.33         0.30         0.33         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O 
        5.33         5.59        80.28        61.35        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       95.70        68.75        69.83        58.95        44.42        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 
       21.40        52.18        26.04        37.48        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE 
       53.03        21.53        50.70        50.86        72.00        76.77 
TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 
       65.10        62.04        55.33        71.80       115.27       113.62 
TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D 
      108.72       106.78       108.03       102.31        98.27        82.68 
TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP 
       70.42        60.56        53.88        40.57        20.45        97.08 
TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 
       82.62        11.51        24.79        26.93       130.09        15.62 
TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 
       32.52        84.10        23.31        64.83        55.86        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      133.22        83.87       134.14       125.16       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
      103.86        97.68        96.00        86.07        93.90        99.32 
TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       37.81        41.82        94.29        61.28        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
       33.73        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28       112.77        97.84       105.27       102.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
      105.30        50.96        98.76        98.66        89.00        99.62 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       93.30        85.64        71.05        93.83       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       86.53        54.21        63.62        38.17        39.39        40.54 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       33.30        38.96        10.59        77.62       143.38       281.29 
TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
       32.58        11.90       275.87       129.57        50.70        65.52 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      146.50       112.37       233.62        18.77       127.33        84.59 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      263.28       162.05       102.77       140.28        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      169.51        97.48       188.68        79.46        18.35        21.01 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       58.55        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 
       37.87         7.07        85.35        74.99        68.12        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
      103.63        71.15        62.93        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       63.09        81.44        37.74        39.55        39.16        70.22 
TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       84.13        51.58        51.68        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       43.53        61.51        21.70        74.89        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       75.48        74.14        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E9 
       16.27         4.41        15.68        14.30         9.63        81.83 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        63.32        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       63.39        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       26.50        23.90        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       17.69        25.81        31.53        97.48        25.08       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.83        33.99        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       110.60        20.88        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.49        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       70.36        33.73        33.70        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 
       22.19        60.99        11.08        54.18        60.36        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       24.59        75.81        28.90       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        52.73        34.55        43.56         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        38.76        34.82        32.88        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       36.20        36.56        39.55        41.62        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       25.84        18.94         9.86        24.82        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02        11.15        48.23        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       32.09        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       20.12         0.69        38.99         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       12.33        29.72         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       26.40        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        28.77        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        17.52         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 
       18.12         2.60        62.47        11.84        11.57        32.75 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U 
       17.06        15.32        14.70        14.47        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  PAX2 MUTATED PAX2 WILD-TYPE 
         44.81           0.03 
  PAX2 MUTATED PAX2 WILD-TYPE 
        165.76         282.90 
  PAX2 MUTATED PAX2 WILD-TYPE 
       118.750         30.525 
[1] "44.8 - 165.8 (118.8)" "0.0 - 282.9 (30.5)"  
[1] "hr="     "9400000"
D62V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  PAX2 MUTATED         1        0        0        0         2         1
  PAX2 WILD-TYPE      87       71        6        4       324       226
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  PAX2 MUTATED           0          0          0          0        0       0
  PAX2 WILD-TYPE         2        137         24         57       15      12
D62V3, multiclass
            clus
vv           PAX2 MUTATED PAX2 WILD-TYPE
  STAGE I               1             87
  STAGE IA              0             71
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             2            324
  STAGE IIB             1            226
  STAGE III             0              2
  STAGE IIIA            0            137
  STAGE IIIB            0             24
  STAGE IIIC            0             57
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  PAX2 MUTATED     1   3   0   0
  PAX2 WILD-TYPE 256 561 120  35
D62V4, multiclass
    clus
vv   PAX2 MUTATED PAX2 WILD-TYPE
  T1            1            256
  T2            3            561
  T3            0            120
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  PAX2 MUTATED     3   1   0   0
  PAX2 WILD-TYPE 459 324 107  68
D62V5, multiclass
    clus
vv   PAX2 MUTATED PAX2 WILD-TYPE
  N0            3            459
  N1            1            324
  N2            0            107
  N3            0             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V6, binary
                cls
clus               0   1
  PAX2 MUTATED     4   0
  PAX2 WILD-TYPE 838  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAX2 MUTATED      4    0
  PAX2 WILD-TYPE  838   16
   clus
vv  PAX2 MUTATED PAX2 WILD-TYPE
  0            4            838
  1            0             16
[1] 2 2
[1] FALSE
D62V7, binary
                cls
clus               0   1
  PAX2 MUTATED     4   0
  PAX2 WILD-TYPE 964   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAX2 MUTATED      4    0
  PAX2 WILD-TYPE  964    9
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  FEMALE            4            964
  MALE              0              9
[1] 2 2
[1] FALSE
D62V8, binary
                cls
clus               0   1
  PAX2 MUTATED     1   3
  PAX2 WILD-TYPE 386 499
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAX2 MUTATED      1    3
  PAX2 WILD-TYPE  386  499
     clus
vv    PAX2 MUTATED PAX2 WILD-TYPE
  NO             1            386
  YES            3            499
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  PAX2 MUTATED                            0                             3
  PAX2 WILD-TYPE                          1                           708
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  PAX2 MUTATED                                1                   0
  PAX2 WILD-TYPE                            171                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  PAX2 MUTATED                       0                                0
  PAX2 WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  PAX2 MUTATED                    0              0
  PAX2 WILD-TYPE                 14             40
D62V9, multiclass
                                  clus
vv                                 PAX2 MUTATED PAX2 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA               3            708
  INFILTRATING LOBULAR CARCINOMA              1            171
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              0             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PAX2 MUTATED                                  0     0
  PAX2 WILD-TYPE                                1    57
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  PAX2 MUTATED                           0     4
  PAX2 WILD-TYPE                       121   701
D62V11, multiclass
                                  clus
vv                                 PAX2 MUTATED PAX2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             57
  BLACK OR AFRICAN AMERICAN                   0            121
  WHITE                                       4            701
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V12, binary
                cls
clus               0   1
  PAX2 MUTATED     0   3
  PAX2 WILD-TYPE  34 769
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAX2 MUTATED      0    3
  PAX2 WILD-TYPE   34  769
                        clus
vv                       PAX2 MUTATED PAX2 WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO            3            769
[1] 2 2
[1] FALSE

Clustering(63) Variable = MED12 MUTATION ANALYSIS
D63V1, survival
                 sevent
clus2               0   1
  MED12 MUTATED    17   3
  MED12 WILD-TYPE 809 135
  MED12 MUTATED MED12 WILD-TYPE 
             20             944 
  MED12 MUTATED MED12 WILD-TYPE 
              3             135 
$`MED12 MUTATED`
TCGA-A2-A25A TCGA-A1-A0SG TCGA-A2-A0T5 TCGA-A8-A07L TCGA-A8-A08A TCGA-A8-A0A6 
      107.70        14.27        17.46        32.05         0.99        21.04 
TCGA-AC-A23C TCGA-AC-A5XU TCGA-AR-A0TX TCGA-AR-A24T TCGA-B6-A0I6 TCGA-B6-A0IG 
       19.23        14.96        64.83       105.27        32.58       146.50 
TCGA-C8-A26Y TCGA-C8-A27A TCGA-C8-A3M7 TCGA-D8-A1JD TCGA-D8-A27G TCGA-E9-A1N4 
       12.95        24.56        33.99        18.15        13.45        32.88 
TCGA-E9-A22H TCGA-OL-A5RW 
       40.50        36.36 

$`MED12 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A7-A0CD 
       19.20        63.12        36.13        88.60        19.56        38.30 
TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       23.61        31.36        24.26        23.80        21.73        22.32 
TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       11.28        11.97        11.05        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       43.43        48.10        47.24        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        39.32        18.21       143.15        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
      121.94        73.84        87.25       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12        24.79       114.81        92.48       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ 
       75.25         5.19        98.99       107.93        56.81        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T6 
       17.52        17.13         8.38        49.84        20.52        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       19.20        16.47        52.47        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT 
      105.34        10.59        36.23        39.65        33.93        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.83         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ 
       25.15        29.56        23.74        20.61        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC 
       10.29        13.41        14.70        14.93        13.74        14.66 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       13.02        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07O TCGA-A8-A07P 
       18.97        18.97        14.01        12.00         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 
        8.98        24.99         9.99        45.07        18.05        36.95 
TCGA-A8-A086 TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J 
       13.02        38.01        28.96        19.96        12.00        37.05 
TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X 
        9.99        31.00        31.00         0.99       112.08        43.00 
TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A 
       40.01        30.97        41.98        12.00         9.99         9.99 
TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R 
       12.00        50.04        33.07         1.02        25.02         8.98 
TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 
       19.04        15.02         0.99        14.01        12.00        19.04 
TCGA-A8-A0A4 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23E 
       13.02         0.99        27.02        17.03        38.04        22.95 
TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB 
       73.91         5.72        22.26        73.05        99.35        40.57 
TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO 
       86.66        90.71        60.92        87.12        26.04        74.14 
TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN 
       33.04        19.33        14.66        32.45         6.48        16.31 
TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI 
       14.83        22.19        25.05        14.99        15.48        23.24 
TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       24.79        16.80        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27       113.62       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.03       102.31        98.27        82.68        70.42        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TU TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       23.31        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
      112.77        97.84       102.84       105.30        50.96        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       98.66        89.00        99.62        93.30        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM 
       93.83       166.42        20.25        86.53        54.21        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       38.17        39.39        40.54        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
       77.62       143.38       281.29        11.90       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       50.70        65.52       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28       263.28       162.05       102.77       140.28 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       282.90       169.51        97.48       188.68        79.46 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.01       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.55        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       68.12        18.84       103.63        71.15        62.93        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 
       20.45        25.55        63.09        81.44        37.74        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.16        70.22        84.13        51.58        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        72.23        75.48        74.14        76.60        85.87 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       77.75        49.94        77.95        74.14        41.75        46.39 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        81.73        77.98        67.10        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       29.98        13.91        78.28        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       79.00        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30         9.63        44.81        81.83        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       63.32        30.35        10.78        15.16        63.39        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF 
       24.56        23.08        41.00        52.96        26.50        23.90 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP 
       20.38         5.85         2.37        16.96         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       36.85        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        4.90        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       37.74        30.28        55.63        37.55        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       51.39        51.16        69.93        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       42.28        12.00        55.69        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       31.53        97.48        25.08       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN 
      122.83        33.99        63.35        55.00        45.63        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
       53.98        55.50        28.14        26.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       57.83       130.16        36.82        36.79        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M 
      110.60        20.88        18.64        23.51        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        48.53        12.56        12.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       12.59        12.59        12.92        12.46        12.49        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM 
       10.92        11.34        11.28         0.16        12.03        12.33 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z 
       12.95        12.33        20.25        12.53        12.36        15.45 
TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27B TCGA-C8-A3M8 
       16.87        16.70         0.03         9.76        14.43        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       15.78        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       14.14        17.42        16.04        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       38.76        34.82        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.03        41.72        40.73        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       19.99         6.15        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.52         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.84        11.57        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       31.99        58.62        34.92        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE 
       64.21        86.96 

  MED12 MUTATED MED12 WILD-TYPE 
           0.99            0.03 
  MED12 MUTATED MED12 WILD-TYPE 
          146.5           282.9 
  MED12 MUTATED MED12 WILD-TYPE 
         28.305          30.790 
[1] "1.0 - 146.5 (28.3)" "0.0 - 282.9 (30.8)"
[1] "hr=" "1.1"
D63V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  MED12 MUTATED         1        0        0        0         7         8
  MED12 WILD-TYPE      87       71        6        4       319       219
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  MED12 MUTATED           0          2          1          2        0       0
  MED12 WILD-TYPE         2        135         23         55       15      12
D63V3, multiclass
            clus
vv           MED12 MUTATED MED12 WILD-TYPE
  STAGE I                1              87
  STAGE IA               0              71
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              7             319
  STAGE IIB              8             219
  STAGE III              0               2
  STAGE IIIA             2             135
  STAGE IIIB             1              23
  STAGE IIIC             2              55
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  MED12 MUTATED     4  12   4   1
  MED12 WILD-TYPE 253 552 116  34
D63V4, multiclass
    clus
vv   MED12 MUTATED MED12 WILD-TYPE
  T1             4             253
  T2            12             552
  T3             4             116
  T4             1              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  MED12 MUTATED     8  10   1   2
  MED12 WILD-TYPE 454 315 106  66
D63V5, multiclass
    clus
vv   MED12 MUTATED MED12 WILD-TYPE
  N0             8             454
  N1            10             315
  N2             1             106
  N3             2              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V6, binary
                 cls
clus                0   1
  MED12 MUTATED    18   0
  MED12 WILD-TYPE 824  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MED12 MUTATED     18    0
  MED12 WILD-TYPE  824   16
   clus
vv  MED12 MUTATED MED12 WILD-TYPE
  0            18             824
  1             0              16
[1] 2 2
[1] FALSE
D63V7, binary
                 cls
clus                0   1
  MED12 MUTATED    21   0
  MED12 WILD-TYPE 947   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MED12 MUTATED     21    0
  MED12 WILD-TYPE  947    9
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  FEMALE            21             947
  MALE               0               9
[1] 2 2
[1] FALSE
D63V8, binary
                 cls
clus                0   1
  MED12 MUTATED     6  12
  MED12 WILD-TYPE 381 490
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MED12 MUTATED      6   12
  MED12 WILD-TYPE  381  490
     clus
vv    MED12 MUTATED MED12 WILD-TYPE
  NO              6             381
  YES            12             490
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  MED12 MUTATED                            0                            14
  MED12 WILD-TYPE                          1                           697
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  MED12 MUTATED                                5                   0
  MED12 WILD-TYPE                            167                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  MED12 MUTATED                       0                                1
  MED12 WILD-TYPE                     6                               26
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  MED12 MUTATED                    0              1
  MED12 WILD-TYPE                 14             39
D63V9, multiclass
                                  clus
vv                                 MED12 MUTATED MED12 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA               14             697
  INFILTRATING LOBULAR CARCINOMA               5             167
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             1              26
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               1              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MED12 MUTATED                                  0     3
  MED12 WILD-TYPE                                1    54
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  MED12 MUTATED                           3    10
  MED12 WILD-TYPE                       118   695
D63V11, multiclass
                                  clus
vv                                 MED12 MUTATED MED12 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        3              54
  BLACK OR AFRICAN AMERICAN                    3             118
  WHITE                                       10             695
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V12, binary
                 cls
clus                0   1
  MED12 MUTATED     0  14
  MED12 WILD-TYPE  34 758
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MED12 MUTATED      0   14
  MED12 WILD-TYPE   34  758
                        clus
vv                       MED12 MUTATED MED12 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO            14             758
[1] 2 2
[1] FALSE

Clustering(64) Variable = CHD4 MUTATION ANALYSIS
D64V1, survival
                sevent
clus2              0   1
  CHD4 MUTATED    16   3
  CHD4 WILD-TYPE 810 135
  CHD4 MUTATED CHD4 WILD-TYPE 
            19            945 
  CHD4 MUTATED CHD4 WILD-TYPE 
             3            135 
$`CHD4 MUTATED`
TCGA-A7-A5ZX TCGA-A2-A04W TCGA-A2-A0CR TCGA-A2-A0YK TCGA-A2-A4S2 TCGA-A8-A07R 
       11.05       101.98       107.93        19.33        21.14         8.98 
TCGA-A8-A0A6 TCGA-AC-A23H TCGA-AN-A046 TCGA-AO-A12E TCGA-AQ-A1H3 TCGA-B6-A0IJ 
       21.04         5.72         0.33        70.42        32.52       233.62 
TCGA-BH-A0E1 TCGA-BH-A2L8 TCGA-C8-A1HM TCGA-C8-A27B TCGA-D8-A1JN TCGA-E9-A1NG 
       15.68        20.12        12.33        14.43        20.38        25.84 
TCGA-GM-A2D9 
       59.57 

$`CHD4 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       22.32        11.28        11.97        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04X TCGA-A2-A0CK 
       78.41       121.94        73.84        87.25        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CS TCGA-A2-A0CT 
       99.12        24.79       114.81        92.48        77.19        75.25 
TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 
        5.19        98.99       107.93        56.81        53.13        67.33 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       34.55        33.76        61.58        25.22       101.72       134.40 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
       80.28       118.45        79.76        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       34.29        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 
       54.64        27.12        44.88        50.43        44.28        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.13         8.38        49.84        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT 
       21.67        49.48        18.61        48.46        31.73        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       23.47        17.36        60.72        22.45        20.25        19.20 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E 
       16.47        52.47        42.44        17.19        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU 
       10.59        36.23        39.65        33.93        91.07        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       32.75        56.28        47.31        35.93        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S3 
        7.30        24.39        21.30        23.21        26.96        21.90 
TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA 
       35.31        34.29        35.47        30.61        37.45        35.67 
TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H 
       33.11        29.79        31.73        20.19        25.15        29.56 
TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF 
       23.74        20.61        11.34        10.59        10.29        13.41 
TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE 
       14.70        14.93        13.74        14.66        14.50        21.17 
TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P 
       17.92        14.73        12.10        10.72        13.02        13.02 
TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 
        1.02        17.98        31.00        26.01         1.02        17.03 
TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G 
       53.98         9.01        43.00        33.99        18.97        18.97 
TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07U 
       14.01        12.00        32.05         9.99        10.98        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        18.05        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       38.01        28.96        19.96        12.00        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       31.00        31.00         0.99       112.08        43.00        40.01 
TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       30.97        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       50.04        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
        0.99        27.02        17.03        38.04        19.23        22.95 
TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
       73.91        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.53         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27       113.62       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
      102.31        98.27        82.68        60.56        53.88        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J 
       20.45        97.08        82.62        11.51        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY 
      130.09        15.62        84.10        23.31        64.83        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        37.81        41.82        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       89.00        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        54.21        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
      143.38       281.29        32.58        11.90       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IK TCGA-B6-A0IM 
       50.70        65.52       146.50       112.37        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28       263.28       162.05       102.77       140.28 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       282.90       169.51        97.48       188.68        79.46 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.01       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.55        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       68.12        18.84       103.63        71.15        62.93        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 
       20.45        25.55        63.09        81.44        37.74        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.16        70.22        84.13        51.58        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        72.23        75.48        74.14        76.60        85.87 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       77.75        49.94        77.95        74.14        41.75        46.39 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        81.73        77.98        67.10        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       29.98        13.91        78.28        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E2 
       79.00        67.86        70.88        16.27         4.41        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
        9.63        44.81        81.83        24.49        31.00        63.32 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        63.39        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI 
       23.08        41.00        52.96        26.50        23.90        20.38 
TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
        5.85         2.37        16.96         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
       12.89        51.32        27.25        50.79         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05        32.91         4.90 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
       35.93        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       30.28        55.63        37.55        66.05         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.16        69.93        91.99       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       12.00        55.69        49.58        17.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48        25.08       114.15        33.17        74.73       122.83 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
       33.99        63.35        55.00        45.63        72.07        53.98 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       55.50        28.14        26.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
      130.16        36.82        36.79        10.52       110.60        20.88 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       18.64        23.51        11.93        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       48.53        12.56        12.16        13.51        12.59        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92        12.46        12.49        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
       11.28         0.16        12.03        12.95        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.53        12.36        12.95        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        0.03         9.76        24.56        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JP TCGA-D8-A1JS 
       20.09        20.12        20.09        19.40        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NH 
       36.56        39.55        41.62        35.77        35.24        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW 
       23.84        26.70         0.79        25.81        26.40        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       28.77        25.94        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        29.82        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG 
       18.90        19.99         6.15        13.94        10.52        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.49        17.52         7.40       109.87       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.84        11.57        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       47.01        64.21        86.96 

  CHD4 MUTATED CHD4 WILD-TYPE 
          0.33           0.03 
  CHD4 MUTATED CHD4 WILD-TYPE 
        233.62         282.90 
  CHD4 MUTATED CHD4 WILD-TYPE 
         20.38          31.00 
[1] "0.3 - 233.6 (20.4)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.1"
D64V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  CHD4 MUTATED         1        0        0        0         6         6
  CHD4 WILD-TYPE      87       71        6        4       320       221
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  CHD4 MUTATED           0          1          0          5        0       0
  CHD4 WILD-TYPE         2        136         24         52       15      12
D64V3, multiclass
            clus
vv           CHD4 MUTATED CHD4 WILD-TYPE
  STAGE I               1             87
  STAGE IA              0             71
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             6            320
  STAGE IIB             6            221
  STAGE III             0              2
  STAGE IIIA            1            136
  STAGE IIIB            0             24
  STAGE IIIC            5             52
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  CHD4 MUTATED     1  12   6   0
  CHD4 WILD-TYPE 256 552 114  35
D64V4, multiclass
    clus
vv   CHD4 MUTATED CHD4 WILD-TYPE
  T1            1            256
  T2           12            552
  T3            6            114
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  CHD4 MUTATED    10   2   1   5
  CHD4 WILD-TYPE 452 323 106  63
D64V5, multiclass
    clus
vv   CHD4 MUTATED CHD4 WILD-TYPE
  N0           10            452
  N1            2            323
  N2            1            106
  N3            5             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V6, binary
                cls
clus               0   1
  CHD4 MUTATED    17   0
  CHD4 WILD-TYPE 825  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHD4 MUTATED     17    0
  CHD4 WILD-TYPE  825   16
   clus
vv  CHD4 MUTATED CHD4 WILD-TYPE
  0           17            825
  1            0             16
[1] 2 2
[1] FALSE
D64V7, binary
                cls
clus               0   1
  CHD4 MUTATED    19   0
  CHD4 WILD-TYPE 949   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHD4 MUTATED     19    0
  CHD4 WILD-TYPE  949    9
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  FEMALE           19            949
  MALE              0              9
[1] 2 2
[1] FALSE
D64V8, binary
                cls
clus               0   1
  CHD4 MUTATED    12   6
  CHD4 WILD-TYPE 375 496
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHD4 MUTATED     12    6
  CHD4 WILD-TYPE  375  496
     clus
vv    CHD4 MUTATED CHD4 WILD-TYPE
  NO            12            375
  YES            6            496
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  CHD4 MUTATED                            0                            10
  CHD4 WILD-TYPE                          1                           701
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  CHD4 MUTATED                                8                   0
  CHD4 WILD-TYPE                            164                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  CHD4 MUTATED                       0                                0
  CHD4 WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  CHD4 MUTATED                    0              1
  CHD4 WILD-TYPE                 14             39
D64V9, multiclass
                                  clus
vv                                 CHD4 MUTATED CHD4 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA              10            701
  INFILTRATING LOBULAR CARCINOMA              8            164
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              1             39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CHD4 MUTATED                                  0     3
  CHD4 WILD-TYPE                                1    54
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  CHD4 MUTATED                           1    13
  CHD4 WILD-TYPE                       120   692
D64V11, multiclass
                                  clus
vv                                 CHD4 MUTATED CHD4 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       3             54
  BLACK OR AFRICAN AMERICAN                   1            120
  WHITE                                      13            692
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V12, binary
                cls
clus               0   1
  CHD4 MUTATED     0  16
  CHD4 WILD-TYPE  34 756
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHD4 MUTATED      0   16
  CHD4 WILD-TYPE   34  756
                        clus
vv                       CHD4 MUTATED CHD4 WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO           16            756
[1] 2 2
[1] FALSE

Clustering(65) Variable = PFKP MUTATION ANALYSIS
D65V1, survival
                sevent
clus2              0   1
  PFKP MUTATED     6   0
  PFKP WILD-TYPE 820 138
  PFKP MUTATED PFKP WILD-TYPE 
             6            958 
  PFKP MUTATED PFKP WILD-TYPE 
             0            138 
$`PFKP MUTATED`
TCGA-AO-A0JI TCGA-A7-A0CE TCGA-AN-A0AK TCGA-BH-A18G TCGA-E2-A14R TCGA-E2-A1IN 
       50.24        35.31         7.36         4.90        38.60        22.19 

$`PFKP WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       14.53        19.33        13.71        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CG TCGA-A7-A0CH 
       23.21        26.96        21.14        21.90        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.53         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27       113.62       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
      102.31        98.27        82.68        70.42        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      112.77        97.84       105.27       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       71.05        93.83       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       63.62        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 
       10.59        77.62       143.38       281.29        32.58        11.90 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       52.96        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       44.81        23.05        32.91        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       17.69        25.81        31.53        97.48        25.08       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.83        33.99        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       110.60        20.88        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.49        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.24        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IO 
       33.73        33.70        28.44        59.18         3.88        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW 
       23.84        26.70         0.79        25.81        26.40        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       28.77        25.94        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        29.82        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG 
       18.90        19.99         6.15        13.94        10.52        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA 
       17.49        17.52         7.40       109.87        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
       79.10        83.34        70.85        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      115.69       106.06       101.62       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       69.30        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM 
       62.47        11.84        11.57        32.75        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.70        14.47        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       58.52        31.99        58.62        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       41.92        47.01        64.21        86.96 

  PFKP MUTATED PFKP WILD-TYPE 
          4.90           0.03 
  PFKP MUTATED PFKP WILD-TYPE 
         50.24         282.90 
  PFKP MUTATED PFKP WILD-TYPE 
         28.75          30.79 
[1] "4.9 - 50.2 (28.8)"  "0.0 - 282.9 (30.8)"
[1] "hr="     "1200000"
D65V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  PFKP MUTATED         1        1        0        0         4         0
  PFKP WILD-TYPE      87       70        6        4       322       227
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  PFKP MUTATED           0          0          0          0        0       0
  PFKP WILD-TYPE         2        137         24         57       15      12
D65V3, multiclass
            clus
vv           PFKP MUTATED PFKP WILD-TYPE
  STAGE I               1             87
  STAGE IA              1             70
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             4            322
  STAGE IIB             0            227
  STAGE III             0              2
  STAGE IIIA            0            137
  STAGE IIIB            0             24
  STAGE IIIC            0             57
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  PFKP MUTATED     3   3   0   0
  PFKP WILD-TYPE 254 561 120  35
D65V4, multiclass
    clus
vv   PFKP MUTATED PFKP WILD-TYPE
  T1            3            254
  T2            3            561
  T3            0            120
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  PFKP MUTATED     5   1   0   0
  PFKP WILD-TYPE 457 324 107  68
D65V5, multiclass
    clus
vv   PFKP MUTATED PFKP WILD-TYPE
  N0            5            457
  N1            1            324
  N2            0            107
  N3            0             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V6, binary
                cls
clus               0   1
  PFKP MUTATED     6   0
  PFKP WILD-TYPE 836  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  PFKP MUTATED      6    0
  PFKP WILD-TYPE  836   16
   clus
vv  PFKP MUTATED PFKP WILD-TYPE
  0            6            836
  1            0             16
[1] 2 2
[1] FALSE
D65V7, binary
                cls
clus               0   1
  PFKP MUTATED     6   0
  PFKP WILD-TYPE 962   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  PFKP MUTATED      6    0
  PFKP WILD-TYPE  962    9
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  FEMALE            6            962
  MALE              0              9
[1] 2 2
[1] FALSE
D65V8, binary
                cls
clus               0   1
  PFKP MUTATED     2   4
  PFKP WILD-TYPE 385 498
[1] "tbl2"
                cls
clus             [,1] [,2]
  PFKP MUTATED      2    4
  PFKP WILD-TYPE  385  498
     clus
vv    PFKP MUTATED PFKP WILD-TYPE
  NO             2            385
  YES            4            498
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  PFKP MUTATED                            0                             6
  PFKP WILD-TYPE                          1                           705
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  PFKP MUTATED                                0                   0
  PFKP WILD-TYPE                            172                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  PFKP MUTATED                       0                                0
  PFKP WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  PFKP MUTATED                    0              0
  PFKP WILD-TYPE                 14             40
D65V9, multiclass
                                  clus
vv                                 PFKP MUTATED PFKP WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA               6            705
  INFILTRATING LOBULAR CARCINOMA              0            172
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              0             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PFKP MUTATED                                  0     0
  PFKP WILD-TYPE                                1    57
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  PFKP MUTATED                           0     6
  PFKP WILD-TYPE                       121   699
D65V11, multiclass
                                  clus
vv                                 PFKP MUTATED PFKP WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             57
  BLACK OR AFRICAN AMERICAN                   0            121
  WHITE                                       6            699
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V12, binary
                cls
clus               0   1
  PFKP MUTATED     0   6
  PFKP WILD-TYPE  34 766
[1] "tbl2"
                cls
clus             [,1] [,2]
  PFKP MUTATED      0    6
  PFKP WILD-TYPE   34  766
                        clus
vv                       PFKP MUTATED PFKP WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO            6            766
[1] 2 2
[1] FALSE

Clustering(66) Variable = RHBG MUTATION ANALYSIS
D66V1, survival
                sevent
clus2              0   1
  RHBG MUTATED     3   1
  RHBG WILD-TYPE 823 137
  RHBG MUTATED RHBG WILD-TYPE 
             4            960 
  RHBG MUTATED RHBG WILD-TYPE 
             1            137 
$`RHBG MUTATED`
TCGA-A8-A07B TCGA-AC-A23H TCGA-BH-A18G TCGA-D8-A1XK 
       43.00         5.72         4.90        14.50 

$`RHBG WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
        9.01        33.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 
       31.00         0.99       112.08        43.00        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       41.98        12.00         9.99         9.99        12.00        50.04 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       33.07         1.02        25.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        0.99        14.01        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
        0.99        27.02        17.03        38.04        19.23        22.95 
TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
       73.91        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA 
       26.04        37.48        20.32        22.36        53.03        21.53 
TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ 
       50.70        50.86        72.00        76.77        65.10        62.04 
TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 
       55.33        71.80       115.27       113.62       108.72       106.78 
TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.03       102.31        98.27        82.68        70.42        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 
       23.31        64.83        55.86        65.36       133.22        83.87 
TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL 
      134.14       125.16       108.36       101.00       103.86        97.68 
TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT 
       96.00        86.07        93.90        99.32        37.81        41.82 
TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H 
       94.29        61.28        86.53        86.43        33.73       160.90 
TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P 
       50.89        94.22       120.33        99.78       118.59         2.76 
TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V 
      104.28       112.77        97.84       105.27       102.84       105.30 
TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 
       50.96        98.76        98.66        89.00        99.62        93.30 
TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ 
       85.64        71.05        93.83       166.42        20.25        86.53 
TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN 
       54.21        63.62        38.17        39.39        40.54        33.30 
TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 
       38.96        10.59        77.62       143.38       281.29        32.58 
TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG 
       11.90       275.87       129.57        50.70        65.52       146.50 
TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO 
      112.37       233.62        18.77       127.33        84.59       165.76 
TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI 
      129.07       140.88       255.68        68.45       212.25       234.28 
TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU 
      263.28       162.05       102.77       140.28        89.46       282.90 
TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX 
      169.51        97.48       188.68        79.46        18.35        21.01 
TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 
      113.79       206.86       129.70       245.10        28.27        68.94 
TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU 
       58.55        43.59       101.52        73.51       139.17       170.17 
TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 
       37.87         7.07        85.35        74.99        68.12        18.84 
TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY 
      103.63        71.15        62.93        59.84        20.45        25.55 
TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 
       63.09        81.44        37.74        39.55        39.16        70.22 
TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD 
       84.13        51.58        51.68        37.22        32.02        18.21 
TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO 
       43.53        61.51        21.70        74.89        61.68        72.23 
TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV 
       75.48        74.14        76.60        85.87        77.75        49.94 
TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 
       77.95        74.14        41.75        46.39        89.06        90.97 
TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK 
       81.73        77.98        67.10        38.01        29.98        13.91 
TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV 
       78.28        15.65         3.22         2.56        79.00        67.86 
TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       70.88        16.27         4.41        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        81.83        24.49        31.00        63.32        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        63.39        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK 
       41.00        52.96        26.50        23.90        20.38         5.85 
TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
        2.37        16.96         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       51.32        27.25        50.79         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18I TCGA-BH-A18J 
       42.35        44.81        23.05        32.91        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07        53.98        55.50        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       26.14        38.60        83.31        57.83       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.79        20.12        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
        0.16        12.03        12.33        12.95        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.53        12.36        12.95        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       15.22        14.73        21.83        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       70.36        33.73        33.70        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 
       22.19        60.99        11.08        54.18        60.36        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       24.59        75.81        28.90       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        52.73        34.55        43.56         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        38.76        34.82        32.88        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       36.20        36.56        39.55        41.62        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       25.84        18.94         9.86        24.82        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02        11.15        48.23        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       32.09        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       20.12         0.69        38.99         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       12.33        29.72         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       26.40        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        28.77        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        17.52         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 
       18.12         2.60        62.47        11.84        11.57        32.75 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U 
       17.06        15.32        14.70        14.47        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  RHBG MUTATED RHBG WILD-TYPE 
          4.90           0.03 
  RHBG MUTATED RHBG WILD-TYPE 
          43.0          282.9 
  RHBG MUTATED RHBG WILD-TYPE 
        10.110         30.985 
[1] "4.9 - 43.0 (10.1)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "6.7"
D66V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  RHBG MUTATED         0        1        0        0         2         1
  RHBG WILD-TYPE      88       70        6        4       324       226
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  RHBG MUTATED           0          0          0          0        0       0
  RHBG WILD-TYPE         2        137         24         57       15      12
D66V3, multiclass
            clus
vv           RHBG MUTATED RHBG WILD-TYPE
  STAGE I               0             88
  STAGE IA              1             70
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             2            324
  STAGE IIB             1            226
  STAGE III             0              2
  STAGE IIIA            0            137
  STAGE IIIB            0             24
  STAGE IIIC            0             57
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  RHBG MUTATED     1   3   0   0
  RHBG WILD-TYPE 256 561 120  35
D66V4, multiclass
    clus
vv   RHBG MUTATED RHBG WILD-TYPE
  T1            1            256
  T2            3            561
  T3            0            120
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  RHBG MUTATED     2   1   0   0
  RHBG WILD-TYPE 460 324 107  68
D66V5, multiclass
    clus
vv   RHBG MUTATED RHBG WILD-TYPE
  N0            2            460
  N1            1            324
  N2            0            107
  N3            0             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V6, binary
                cls
clus               0   1
  RHBG MUTATED     3   0
  RHBG WILD-TYPE 839  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHBG MUTATED      3    0
  RHBG WILD-TYPE  839   16
   clus
vv  RHBG MUTATED RHBG WILD-TYPE
  0            3            839
  1            0             16
[1] 2 2
[1] FALSE
D66V7, binary
                cls
clus               0   1
  RHBG MUTATED     4   0
  RHBG WILD-TYPE 964   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHBG MUTATED      4    0
  RHBG WILD-TYPE  964    9
        clus
vv       RHBG MUTATED RHBG WILD-TYPE
  FEMALE            4            964
  MALE              0              9
[1] 2 2
[1] FALSE
D66V8, binary
                cls
clus               0   1
  RHBG MUTATED     2   2
  RHBG WILD-TYPE 385 500
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHBG MUTATED      2    2
  RHBG WILD-TYPE  385  500
     clus
vv    RHBG MUTATED RHBG WILD-TYPE
  NO             2            385
  YES            2            500
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  RHBG MUTATED                            0                             4
  RHBG WILD-TYPE                          1                           707
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  RHBG MUTATED                                0                   0
  RHBG WILD-TYPE                            172                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  RHBG MUTATED                       0                                0
  RHBG WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  RHBG MUTATED                    0              0
  RHBG WILD-TYPE                 14             40
D66V9, multiclass
                                  clus
vv                                 RHBG MUTATED RHBG WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA               4            707
  INFILTRATING LOBULAR CARCINOMA              0            172
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              0             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V10, continuous
[1] "Remove cluster labels:" "RHBG MUTATED"          
clus
  RHBG MUTATED RHBG WILD-TYPE 
             2            824 
    TCGA-A1-A0SP     TCGA-A2-A04V     TCGA-A2-A04Y     TCGA-A2-A0CQ 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A1G4     TCGA-A2-A25A     TCGA-A7-A0CD     TCGA-A7-A13G 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A7-A26E     TCGA-A7-A26F     TCGA-A7-A26H     TCGA-A7-A26I 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A7-A2KD     TCGA-A7-A3J1     TCGA-A7-A426     TCGA-A7-A5ZX 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AC-A3W5     TCGA-AC-A3W6     TCGA-AC-A5EI     TCGA-AC-A5XS 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AC-A62X     TCGA-AO-A0JI     TCGA-AO-A1KT     TCGA-AQ-A0Y5 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AQ-A54N     TCGA-AQ-A54O     TCGA-AR-A1AM     TCGA-AR-A1AR 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A2LL     TCGA-AR-A2LR     TCGA-AR-A5QM     TCGA-BH-A0B6 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0DO     TCGA-BH-A0EA     TCGA-BH-A18H     TCGA-BH-A1F5 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A146     TCGA-E2-A158     TCGA-E2-A1BC     TCGA-E2-A1L8 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A1LG     TCGA-E2-A2P5     TCGA-EW-A1J5     TCGA-EW-A1P3 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-GM-A2DD     TCGA-GM-A2DO     TCGA-LL-A440     TCGA-LL-A50Y 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-LL-A5YP     TCGA-OL-A5RU     TCGA-A1-A0SB     TCGA-A1-A0SD 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A1-A0SE     TCGA-A1-A0SF     TCGA-A1-A0SG     TCGA-A1-A0SH 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A1-A0SI     TCGA-A1-A0SJ     TCGA-A1-A0SK     TCGA-A1-A0SM 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A1-A0SN     TCGA-A1-A0SQ     TCGA-A2-A04N     TCGA-A2-A04P 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A04Q     TCGA-A2-A04R     TCGA-A2-A04T     TCGA-A2-A04U 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A04W     TCGA-A2-A04X     TCGA-A2-A0CK     TCGA-A2-A0CL 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A0CM     TCGA-A2-A0CO     TCGA-A2-A0CP     TCGA-A2-A0CR 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A0CS     TCGA-A2-A0CT     TCGA-A2-A0CU     TCGA-A2-A0CV 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A0CW     TCGA-A2-A0CX     TCGA-A2-A0CZ     TCGA-A2-A0D0 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A0D1     TCGA-A2-A0D2     TCGA-A2-A0D3     TCGA-A2-A0D4 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A0EM     TCGA-A2-A0EN     TCGA-A2-A0EO     TCGA-A2-A0EP 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A0EQ     TCGA-A2-A0ER     TCGA-A2-A0ES     TCGA-A2-A0ET 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A0EU     TCGA-A2-A0EV     TCGA-A2-A0EW     TCGA-A2-A0EX 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A0EY     TCGA-A2-A0ST     TCGA-A2-A0SU     TCGA-A2-A0SV 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A0SW     TCGA-A2-A0SX     TCGA-A2-A0SY     TCGA-A2-A0T0 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A0T1     TCGA-A2-A0T2     TCGA-A2-A0T3     TCGA-A2-A0T4 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A0T5     TCGA-A2-A0T6     TCGA-A2-A0T7     TCGA-A2-A0YC 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A0YD     TCGA-A2-A0YE     TCGA-A2-A0YF     TCGA-A2-A0YG 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A0YH     TCGA-A2-A0YI     TCGA-A2-A0YJ     TCGA-A2-A0YK 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A0YL     TCGA-A2-A0YM     TCGA-A2-A0YT     TCGA-A2-A1FV 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A1FW     TCGA-A2-A1FX     TCGA-A2-A1FZ     TCGA-A2-A1G0 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A1G1     TCGA-A2-A1G6     TCGA-A2-A259     TCGA-A2-A25B 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A25C     TCGA-A2-A25D     TCGA-A2-A25E     TCGA-A2-A25F 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A3KC     TCGA-A2-A3KD     TCGA-A2-A3XS     TCGA-A2-A3XT 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A3XU     TCGA-A2-A3XV     TCGA-A2-A3XW     TCGA-A2-A3XX 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A3XY     TCGA-A2-A3XZ     TCGA-A2-A3Y0     TCGA-A2-A4RW 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A4RX     TCGA-A2-A4RY     TCGA-A2-A4S0     TCGA-A2-A4S1 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A2-A4S2     TCGA-A2-A4S3     TCGA-A7-A0CE     TCGA-A7-A0CG 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A7-A0CH     TCGA-A7-A0CJ     TCGA-A7-A0D9     TCGA-A7-A0DA 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A7-A0DB     TCGA-A7-A0DC     TCGA-A7-A13D     TCGA-A7-A13E 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A7-A13F     TCGA-A7-A13H     TCGA-A7-A26G     TCGA-A7-A26J 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A7-A3IY     TCGA-A7-A3J0     TCGA-A7-A3RF     TCGA-A7-A425 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A7-A4SA     TCGA-A7-A4SB     TCGA-A7-A4SC     TCGA-A7-A4SD 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A7-A4SE     TCGA-A7-A4SF     TCGA-A7-A56D     TCGA-A7-A5ZV 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-A7-A5ZW     TCGA-AC-A23C     TCGA-AC-A23E     TCGA-AC-A23G 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AC-A2B8     TCGA-AC-A2BK     TCGA-AC-A2BM     TCGA-AC-A2FB 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AC-A2FE     TCGA-AC-A2FF     TCGA-AC-A2FG     TCGA-AC-A2FK 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AC-A2FM     TCGA-AC-A2FO     TCGA-AC-A2QH     TCGA-AC-A2QI 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AC-A2QJ     TCGA-AC-A3BB     TCGA-AC-A3EH     TCGA-AC-A3HN 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AC-A3OD     TCGA-AC-A3QP     TCGA-AC-A3TM     TCGA-AC-A3TN 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AC-A3W7     TCGA-AC-A3YI     TCGA-AC-A3YJ     TCGA-AC-A5EH 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AC-A5XU     TCGA-AC-A62Y     TCGA-AN-A03X     TCGA-AN-A03Y 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AN-A041     TCGA-AN-A046     TCGA-AN-A049     TCGA-AN-A04A 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AN-A04C     TCGA-AN-A04D     TCGA-AN-A0AJ     TCGA-AN-A0AK 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AN-A0AL     TCGA-AN-A0AM     TCGA-AN-A0AR     TCGA-AN-A0AS 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AN-A0AT     TCGA-AN-A0FD     TCGA-AN-A0FF     TCGA-AN-A0FJ 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AN-A0FK     TCGA-AN-A0FL     TCGA-AN-A0FN     TCGA-AN-A0FS 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AN-A0FT     TCGA-AN-A0FV     TCGA-AN-A0FW     TCGA-AN-A0FX 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AN-A0FY     TCGA-AN-A0FZ     TCGA-AN-A0G0     TCGA-AN-A0XL 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AN-A0XN     TCGA-AN-A0XO     TCGA-AN-A0XP     TCGA-AN-A0XR 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AN-A0XS     TCGA-AN-A0XT     TCGA-AN-A0XU     TCGA-AN-A0XV 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AN-A0XW     TCGA-AO-A03L     TCGA-AO-A03M     TCGA-AO-A03N 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AO-A03O     TCGA-AO-A03P     TCGA-AO-A03R     TCGA-AO-A03T 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AO-A03U     TCGA-AO-A03V     TCGA-AO-A0J2     TCGA-AO-A0J3 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AO-A0J4     TCGA-AO-A0J5     TCGA-AO-A0J6     TCGA-AO-A0J7 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AO-A0J8     TCGA-AO-A0J9     TCGA-AO-A0JA     TCGA-AO-A0JB 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AO-A0JC     TCGA-AO-A0JD     TCGA-AO-A0JE     TCGA-AO-A0JF 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AO-A0JJ     TCGA-AO-A0JL     TCGA-AO-A0JM     TCGA-AO-A124 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AO-A125     TCGA-AO-A126     TCGA-AO-A128     TCGA-AO-A129 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AO-A12A     TCGA-AO-A12B     TCGA-AO-A12D     TCGA-AO-A12E 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AO-A12F     TCGA-AO-A12G     TCGA-AO-A12H     TCGA-AO-A1KO 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AO-A1KP     TCGA-AO-A1KR     TCGA-AO-A1KS     TCGA-AQ-A04H 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AQ-A04J     TCGA-AQ-A04L     TCGA-AQ-A1H2     TCGA-AQ-A1H3 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A0TS     TCGA-AR-A0TU     TCGA-AR-A0TX     TCGA-AR-A0TY 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A0U0     TCGA-AR-A0U1     TCGA-AR-A0U2     TCGA-AR-A0U3 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A1AH     TCGA-AR-A1AI     TCGA-AR-A1AJ     TCGA-AR-A1AK 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A1AL     TCGA-AR-A1AN     TCGA-AR-A1AO     TCGA-AR-A1AP 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A1AQ     TCGA-AR-A1AS     TCGA-AR-A1AT     TCGA-AR-A1AU 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A1AV     TCGA-AR-A1AW     TCGA-AR-A1AX     TCGA-AR-A1AY 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A24H     TCGA-AR-A24K     TCGA-AR-A24L     TCGA-AR-A24M 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A24N     TCGA-AR-A24O     TCGA-AR-A24P     TCGA-AR-A24Q 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A24R     TCGA-AR-A24S     TCGA-AR-A24T     TCGA-AR-A24U 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A24V     TCGA-AR-A24W     TCGA-AR-A24X     TCGA-AR-A24Z 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A250     TCGA-AR-A251     TCGA-AR-A252     TCGA-AR-A254 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A255     TCGA-AR-A256     TCGA-AR-A2LE     TCGA-AR-A2LH 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A2LJ     TCGA-AR-A2LK     TCGA-AR-A2LM     TCGA-AR-A2LN 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A2LO     TCGA-AR-A2LQ     TCGA-AR-A5QN     TCGA-AR-A5QP 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-AR-A5QQ     TCGA-B6-A0I1     TCGA-B6-A0I2     TCGA-B6-A0I5 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-B6-A0I6     TCGA-B6-A0IA     TCGA-B6-A0IB     TCGA-B6-A0IE 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-B6-A0IG     TCGA-B6-A0IH     TCGA-B6-A0IJ     TCGA-B6-A0IK 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-B6-A0IM     TCGA-B6-A0IO     TCGA-B6-A0IP     TCGA-B6-A0IQ 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-B6-A0RE     TCGA-B6-A0RG     TCGA-B6-A0RH     TCGA-B6-A0RI 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-B6-A0RN     TCGA-B6-A0RO     TCGA-B6-A0RP     TCGA-B6-A0RQ 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-B6-A0RT     TCGA-B6-A0RU     TCGA-B6-A0RV     TCGA-B6-A0WT 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-B6-A0WV     TCGA-B6-A0WW     TCGA-B6-A0WX     TCGA-B6-A0WY 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-B6-A0WZ     TCGA-B6-A0X0     TCGA-B6-A0X1     TCGA-B6-A0X4 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-B6-A0X5     TCGA-B6-A1KC     TCGA-B6-A1KF     TCGA-B6-A1KI 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-B6-A1KN     TCGA-B6-A2IU     TCGA-B6-A3ZX     TCGA-B6-A400 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-B6-A401     TCGA-B6-A402     TCGA-B6-A408     TCGA-B6-A409 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-B6-A40B     TCGA-B6-A40C     TCGA-BH-A0AU     TCGA-BH-A0AV 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0AW     TCGA-BH-A0AY     TCGA-BH-A0AZ     TCGA-BH-A0B0 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0B1     TCGA-BH-A0B3     TCGA-BH-A0B4     TCGA-BH-A0B5 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0B7     TCGA-BH-A0B8     TCGA-BH-A0B9     TCGA-BH-A0BA 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0BC     TCGA-BH-A0BD     TCGA-BH-A0BF     TCGA-BH-A0BG 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0BJ     TCGA-BH-A0BL     TCGA-BH-A0BM     TCGA-BH-A0BO 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0BP     TCGA-BH-A0BQ     TCGA-BH-A0BR     TCGA-BH-A0BS 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0BV     TCGA-BH-A0BW     TCGA-BH-A0BZ     TCGA-BH-A0C0 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0C1     TCGA-BH-A0C3     TCGA-BH-A0C7     TCGA-BH-A0DD 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0DE     TCGA-BH-A0DG     TCGA-BH-A0DH     TCGA-BH-A0DI 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0DK     TCGA-BH-A0DL     TCGA-BH-A0DP     TCGA-BH-A0DQ 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0DS     TCGA-BH-A0DT     TCGA-BH-A0DV     TCGA-BH-A0DX 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0DZ     TCGA-BH-A0E0     TCGA-BH-A0E1     TCGA-BH-A0E2 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0E6     TCGA-BH-A0E7     TCGA-BH-A0E9     TCGA-BH-A0EB 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0EE     TCGA-BH-A0EI     TCGA-BH-A0GY     TCGA-BH-A0GZ 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0H0     TCGA-BH-A0H3     TCGA-BH-A0H5     TCGA-BH-A0H6 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0H7     TCGA-BH-A0H9     TCGA-BH-A0HA     TCGA-BH-A0HB 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0HF     TCGA-BH-A0HI     TCGA-BH-A0HK     TCGA-BH-A0HL 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0HN     TCGA-BH-A0HO     TCGA-BH-A0HP     TCGA-BH-A0HQ 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0HU     TCGA-BH-A0HW     TCGA-BH-A0HX     TCGA-BH-A0HY 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0RX     TCGA-BH-A0W3     TCGA-BH-A0W5     TCGA-BH-A0W7 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A0WA     TCGA-BH-A18F     TCGA-BH-A18I     TCGA-BH-A18K 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A18L     TCGA-BH-A18M     TCGA-BH-A18N     TCGA-BH-A18P 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A18Q     TCGA-BH-A18R     TCGA-BH-A18S     TCGA-BH-A18U 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A18V     TCGA-BH-A1EO     TCGA-BH-A1ES     TCGA-BH-A1ET 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A1EV     TCGA-BH-A1EW     TCGA-BH-A1EX     TCGA-BH-A1EY 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A1F0     TCGA-BH-A1F2     TCGA-BH-A1F6     TCGA-BH-A1F8 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A1FC     TCGA-BH-A1FD     TCGA-BH-A1FE     TCGA-BH-A1FH 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A1FJ     TCGA-BH-A1FL     TCGA-BH-A1FM     TCGA-BH-A1FN 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A1FR     TCGA-BH-A1FU     TCGA-BH-A201     TCGA-BH-A202 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A203     TCGA-BH-A204     TCGA-BH-A208     TCGA-BH-A209 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A28O     TCGA-BH-A28Q     TCGA-BH-A2L8     TCGA-BH-A42V 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-BH-A5IZ     TCGA-BH-A5J0     TCGA-C8-A12K     TCGA-C8-A12T 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-C8-A12V     TCGA-C8-A12Z     TCGA-C8-A131     TCGA-C8-A132 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-C8-A135     TCGA-C8-A273     TCGA-C8-A3M7     TCGA-D8-A13Y 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A13Z     TCGA-D8-A140     TCGA-D8-A141     TCGA-D8-A142 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A143     TCGA-D8-A145     TCGA-D8-A147     TCGA-D8-A1J8 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A1J9     TCGA-D8-A1JB     TCGA-D8-A1JC     TCGA-D8-A1JD 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A1JE     TCGA-D8-A1JF     TCGA-D8-A1JG     TCGA-D8-A1JI 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A1JJ     TCGA-D8-A1JK     TCGA-D8-A1JL     TCGA-D8-A1JM 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A1JN     TCGA-D8-A1JS     TCGA-D8-A1JT     TCGA-D8-A1JU 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A1X5     TCGA-D8-A1X6     TCGA-D8-A1X7     TCGA-D8-A1X8 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A1X9     TCGA-D8-A1XA     TCGA-D8-A1XB     TCGA-D8-A1XC 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A1XF     TCGA-D8-A1XG     TCGA-D8-A1XJ     TCGA-D8-A1XL 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A1XM     TCGA-D8-A1XO     TCGA-D8-A1XQ     TCGA-D8-A1XR 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A1XS     TCGA-D8-A1XT     TCGA-D8-A1XU     TCGA-D8-A1XV 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A1XW     TCGA-D8-A1XY     TCGA-D8-A1XZ     TCGA-D8-A1Y0 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A1Y1     TCGA-D8-A1Y2     TCGA-D8-A1Y3     TCGA-D8-A27E 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A27F     TCGA-D8-A27G     TCGA-D8-A27I     TCGA-D8-A27K 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A27L     TCGA-D8-A27N     TCGA-D8-A27P     TCGA-D8-A27R 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A27T     TCGA-D8-A27V     TCGA-D8-A27W     TCGA-D8-A3Z5 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-D8-A3Z6     TCGA-D8-A4Z1     TCGA-E2-A105     TCGA-E2-A107 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A108     TCGA-E2-A109     TCGA-E2-A10A     TCGA-E2-A10B 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A10C     TCGA-E2-A10E     TCGA-E2-A10F     TCGA-E2-A14N 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A14O     TCGA-E2-A14P     TCGA-E2-A14Q     TCGA-E2-A14R 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A14S     TCGA-E2-A14T     TCGA-E2-A14U     TCGA-E2-A14V 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A14W     TCGA-E2-A14X     TCGA-E2-A14Y     TCGA-E2-A14Z 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A150     TCGA-E2-A152     TCGA-E2-A153     TCGA-E2-A154 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A155     TCGA-E2-A156     TCGA-E2-A159     TCGA-E2-A15A 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A15C     TCGA-E2-A15D     TCGA-E2-A15E     TCGA-E2-A15F 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A15G     TCGA-E2-A15H     TCGA-E2-A15I     TCGA-E2-A15J 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A15K     TCGA-E2-A15L     TCGA-E2-A15M     TCGA-E2-A15P 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A15R     TCGA-E2-A15S     TCGA-E2-A15T     TCGA-E2-A1AZ 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A1B0     TCGA-E2-A1B1     TCGA-E2-A1B4     TCGA-E2-A1B5 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A1B6     TCGA-E2-A1BD     TCGA-E2-A1IE     TCGA-E2-A1IF 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A1IG     TCGA-E2-A1IH     TCGA-E2-A1II     TCGA-E2-A1IJ 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A1IK     TCGA-E2-A1IL     TCGA-E2-A1IN     TCGA-E2-A1IO 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A1IU     TCGA-E2-A1L6     TCGA-E2-A1L7     TCGA-E2-A1L9 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A1LA     TCGA-E2-A1LB     TCGA-E2-A1LE     TCGA-E2-A1LH 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A1LI     TCGA-E2-A1LK     TCGA-E2-A1LL     TCGA-E2-A1LS 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A2P6     TCGA-E2-A3DX     TCGA-E2-A56Z     TCGA-E2-A570 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E2-A573     TCGA-E2-A574     TCGA-E9-A1N3     TCGA-E9-A1N4 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A1N5     TCGA-E9-A1N8     TCGA-E9-A1N9     TCGA-E9-A1NA 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A1NC     TCGA-E9-A1ND     TCGA-E9-A1NE     TCGA-E9-A1NF 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A1NG     TCGA-E9-A1NH     TCGA-E9-A1NI     TCGA-E9-A1QZ 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A1R0     TCGA-E9-A1R2     TCGA-E9-A1R3     TCGA-E9-A1R4 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A1R5     TCGA-E9-A1R6     TCGA-E9-A1R7     TCGA-E9-A1RA 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A1RB     TCGA-E9-A1RC     TCGA-E9-A1RD     TCGA-E9-A1RE 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A1RF     TCGA-E9-A1RG     TCGA-E9-A1RH     TCGA-E9-A1RI 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A226     TCGA-E9-A227     TCGA-E9-A228     TCGA-E9-A229 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A22A     TCGA-E9-A22B     TCGA-E9-A22D     TCGA-E9-A22E 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A22G     TCGA-E9-A22H     TCGA-E9-A243     TCGA-E9-A244 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A245     TCGA-E9-A247     TCGA-E9-A248     TCGA-E9-A249 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A24A     TCGA-E9-A295     TCGA-E9-A2JS     TCGA-E9-A2JT 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A3HO     TCGA-E9-A3Q9     TCGA-E9-A3QA     TCGA-E9-A3X8 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A54X     TCGA-E9-A54Y     TCGA-E9-A5FK     TCGA-E9-A5FL 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-E9-A5UO     TCGA-E9-A5UP     TCGA-EW-A1IW     TCGA-EW-A1IX 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-EW-A1IY     TCGA-EW-A1IZ     TCGA-EW-A1J1     TCGA-EW-A1J2 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-EW-A1J3     TCGA-EW-A1J6     TCGA-EW-A1OV     TCGA-EW-A1OX 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-EW-A1OY     TCGA-EW-A1OZ     TCGA-EW-A1P0     TCGA-EW-A1P1 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-EW-A1P4     TCGA-EW-A1P5     TCGA-EW-A1P6     TCGA-EW-A1P7 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-EW-A1P8     TCGA-EW-A1PA     TCGA-EW-A1PB     TCGA-EW-A1PC 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-EW-A1PD     TCGA-EW-A1PE     TCGA-EW-A1PG     TCGA-EW-A1PH 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-EW-A2FR     TCGA-EW-A2FS     TCGA-EW-A2FV     TCGA-EW-A2FW 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-EW-A3E8     TCGA-EW-A3U0     TCGA-EW-A423     TCGA-GI-A2C8 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-GI-A2C9     TCGA-GM-A2D9     TCGA-GM-A2DA     TCGA-GM-A2DB 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-GM-A2DC     TCGA-GM-A2DF     TCGA-GM-A2DH     TCGA-GM-A2DI 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-GM-A2DK     TCGA-GM-A2DL     TCGA-GM-A2DM     TCGA-GM-A2DN 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-GM-A3NW     TCGA-GM-A3NY     TCGA-GM-A3XG     TCGA-GM-A3XL 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-GM-A3XN     TCGA-GM-A4E0     TCGA-GM-A5PV     TCGA-GM-A5PX 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-HN-A2NL     TCGA-HN-A2OB     TCGA-JL-A3YW     TCGA-JL-A3YX 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-LL-A441     TCGA-LL-A5YL     TCGA-LL-A5YN     TCGA-LL-A5YO 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-LQ-A4E4     TCGA-MS-A51U     TCGA-OK-A5Q2     TCGA-OL-A5RV 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-OL-A5RW     TCGA-OL-A5RY     TCGA-OL-A5S0     TCGA-OL-A66I 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
    TCGA-OL-A66J     TCGA-PE-A5DC     TCGA-PE-A5DD     TCGA-PE-A5DE 
"RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" "RHBG WILD-TYPE" 
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  RHBG MUTATED                                  0     0
  RHBG WILD-TYPE                                1    57
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  RHBG MUTATED                           0     3
  RHBG WILD-TYPE                       121   702
D66V11, multiclass
                                  clus
vv                                 RHBG MUTATED RHBG WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             57
  BLACK OR AFRICAN AMERICAN                   0            121
  WHITE                                       3            702
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V12, binary
                cls
clus               0   1
  RHBG MUTATED     0   3
  RHBG WILD-TYPE  34 769
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHBG MUTATED      0    3
  RHBG WILD-TYPE   34  769
                        clus
vv                       RHBG MUTATED RHBG WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO            3            769
[1] 2 2
[1] FALSE

Clustering(67) Variable = PSIP1 MUTATION ANALYSIS
D67V1, survival
                 sevent
clus2               0   1
  PSIP1 MUTATED     6   2
  PSIP1 WILD-TYPE 820 136
  PSIP1 MUTATED PSIP1 WILD-TYPE 
              8             956 
  PSIP1 MUTATED PSIP1 WILD-TYPE 
              2             136 
$`PSIP1 MUTATED`
TCGA-A8-A08A TCGA-AC-A23H TCGA-AO-A0J5 TCGA-AO-A128 TCGA-C8-A130 TCGA-D8-A1JE 
        0.99         5.72        26.04       106.78        12.16        18.90 
TCGA-E2-A1IH TCGA-E9-A3HO 
       33.73        38.07 

$`PSIP1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U 
       12.00        32.05         9.99        10.98         8.98        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08B 
        9.99        45.07        18.05        36.95        13.02        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 
       31.00         0.99       112.08        43.00        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       41.98        12.00         9.99         9.99        12.00        50.04 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       33.07         1.02        25.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        0.99        14.01        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
        0.99        27.02        17.03        38.04        19.23        22.95 
TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
       73.91        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP 
        0.33         0.53         5.36         0.33        12.33         0.30 
TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW 
        0.33         0.33         0.33         0.33         5.33         5.59 
TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R 
       80.28        61.35        66.77        81.63        95.70        68.75 
TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 
       69.83        58.95        44.42        32.78        21.40        52.18 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A 
       71.80       115.27       113.62       108.72       108.03       102.31 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        82.68        70.42        60.56        53.88        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J 
       20.45        97.08        82.62        11.51        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX 
      130.09        15.62        32.52        84.10        23.31        64.83 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH 
       55.86        65.36       133.22        83.87       134.14       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO 
      108.36       101.00       103.86        97.68        96.00        86.07 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV 
       93.90        99.32        37.81        41.82        94.29        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L 
       86.53        86.43        33.73       160.90        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
      120.33        99.78       118.59         2.76       104.28       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       97.84       105.27       102.84       105.30        50.96        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       98.66        89.00        99.62        93.30        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM 
       93.83       166.42        20.25        86.53        54.21        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       38.17        39.39        40.54        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA 
       77.62       143.38       281.29        32.58        11.90       275.87 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      129.57        50.70        65.52       146.50       112.37       233.62 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
       18.77       127.33        84.59       165.76       129.07       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO 
      255.68        68.45       212.25       234.28       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.28        89.46       282.90       169.51        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.46        18.35        21.01       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.55        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        74.99        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 
       37.74        39.55        39.16        70.22        84.13        51.58 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       51.68        37.22        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        85.87        77.75        49.94        77.95        74.14 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       41.75        46.39        89.06        90.97        81.73        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP 
       67.10        38.01        29.98        13.91        78.28        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        79.00        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        81.83 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        63.32        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       63.39        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       26.50        23.90        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       17.69        25.81        31.53        97.48        25.08       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.83        33.99        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       110.60        20.88        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 
       13.51        12.59        12.59        12.92        12.46        12.49 
TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK 
       12.33        10.92        11.34        11.28         0.16        12.03 
TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X 
       12.33        12.95        12.33        20.25        12.53        12.36 
TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 
       12.95        15.45        16.87        16.70         0.03         9.76 
TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z 
       24.56        14.43        33.99        12.95        56.81        20.88 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       12.03        53.00        14.01        18.97        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       20.09        19.40        20.38        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        15.22        14.73        21.83 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       14.50        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       16.31        16.64        12.99        15.16        43.04        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       15.32        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       16.04        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V 
       13.48        17.06         1.61        10.09        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 
       12.26        33.37        18.51        21.67        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       27.52        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.87        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        75.98        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       69.34        18.51        63.62        69.96        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       20.71        21.63        18.21        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        11.05        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1II 
       28.50        37.25        77.65        37.41        70.36        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        52.73        34.55 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 
       43.56         8.28        30.61        34.92        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        34.16        36.20        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       41.62        35.77        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       32.91        30.18        30.44        23.90        23.84        26.70 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
        0.79        25.81        26.40        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV 
       18.21        18.90        13.25        16.57        28.77        25.94 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 
       29.95        29.85        40.41        41.13        39.78        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       23.11        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
        6.15        13.94        10.52        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        17.52 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
        7.40       109.87        59.57       216.76        79.10        83.34 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
      101.62       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       11.57        32.75        17.06        15.32        14.70        14.47 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       27.91        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC 
       20.38        26.70        23.47        65.62        41.92        47.01 
TCGA-PE-A5DD TCGA-PE-A5DE 
       64.21        86.96 

  PSIP1 MUTATED PSIP1 WILD-TYPE 
           0.99            0.03 
  PSIP1 MUTATED PSIP1 WILD-TYPE 
         106.78          282.90 
  PSIP1 MUTATED PSIP1 WILD-TYPE 
         22.470          30.985 
[1] "1.0 - 106.8 (22.5)" "0.0 - 282.9 (31.0)"
[1] "hr=" "2.7"
D67V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  PSIP1 MUTATED         2        0        0        0         4         0
  PSIP1 WILD-TYPE      86       71        6        4       322       227
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  PSIP1 MUTATED           0          1          0          0        1       0
  PSIP1 WILD-TYPE         2        136         24         57       14      12
D67V3, multiclass
            clus
vv           PSIP1 MUTATED PSIP1 WILD-TYPE
  STAGE I                2              86
  STAGE IA               0              71
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              4             322
  STAGE IIB              0             227
  STAGE III              0               2
  STAGE IIIA             1             136
  STAGE IIIB             0              24
  STAGE IIIC             0              57
  STAGE IV               1              14
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  PSIP1 MUTATED     3   3   1   1
  PSIP1 WILD-TYPE 254 561 119  34
D67V4, multiclass
    clus
vv   PSIP1 MUTATED PSIP1 WILD-TYPE
  T1             3             254
  T2             3             561
  T3             1             119
  T4             1              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  PSIP1 MUTATED     4   2   1   0
  PSIP1 WILD-TYPE 458 323 106  68
D67V5, multiclass
    clus
vv   PSIP1 MUTATED PSIP1 WILD-TYPE
  N0             4             458
  N1             2             323
  N2             1             106
  N3             0              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V6, binary
                 cls
clus                0   1
  PSIP1 MUTATED     7   1
  PSIP1 WILD-TYPE 835  15
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PSIP1 MUTATED      7    1
  PSIP1 WILD-TYPE  835   15
   clus
vv  PSIP1 MUTATED PSIP1 WILD-TYPE
  0             7             835
  1             1              15
[1] 2 2
[1] FALSE
D67V7, binary
                 cls
clus                0   1
  PSIP1 MUTATED     8   0
  PSIP1 WILD-TYPE 960   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PSIP1 MUTATED      8    0
  PSIP1 WILD-TYPE  960    9
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  FEMALE             8             960
  MALE               0               9
[1] 2 2
[1] FALSE
D67V8, binary
                 cls
clus                0   1
  PSIP1 MUTATED     5   2
  PSIP1 WILD-TYPE 382 500
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PSIP1 MUTATED      5    2
  PSIP1 WILD-TYPE  382  500
     clus
vv    PSIP1 MUTATED PSIP1 WILD-TYPE
  NO              5             382
  YES             2             500
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  PSIP1 MUTATED                            0                             5
  PSIP1 WILD-TYPE                          1                           706
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  PSIP1 MUTATED                                2                   0
  PSIP1 WILD-TYPE                            170                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  PSIP1 MUTATED                       0                                0
  PSIP1 WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  PSIP1 MUTATED                    0              1
  PSIP1 WILD-TYPE                 14             39
D67V9, multiclass
                                  clus
vv                                 PSIP1 MUTATED PSIP1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA                5             706
  INFILTRATING LOBULAR CARCINOMA               2             170
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               1              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PSIP1 MUTATED                                  0     1
  PSIP1 WILD-TYPE                                1    56
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  PSIP1 MUTATED                           0     6
  PSIP1 WILD-TYPE                       121   699
D67V11, multiclass
                                  clus
vv                                 PSIP1 MUTATED PSIP1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        1              56
  BLACK OR AFRICAN AMERICAN                    0             121
  WHITE                                        6             699
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V12, binary
                 cls
clus                0   1
  PSIP1 MUTATED     0   7
  PSIP1 WILD-TYPE  34 765
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PSIP1 MUTATED      0    7
  PSIP1 WILD-TYPE   34  765
                        clus
vv                       PSIP1 MUTATED PSIP1 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO             7             765
[1] 2 2
[1] FALSE

Clustering(68) Variable = LRIG2 MUTATION ANALYSIS
D68V1, survival
                 sevent
clus2               0   1
  LRIG2 MUTATED     4   3
  LRIG2 WILD-TYPE 822 135
  LRIG2 MUTATED LRIG2 WILD-TYPE 
              7             957 
  LRIG2 MUTATED LRIG2 WILD-TYPE 
              3             135 
$`LRIG2 MUTATED`
TCGA-A2-A04V TCGA-AC-A3W5 TCGA-A2-A0CU TCGA-AC-A23H TCGA-AO-A0J3 TCGA-BH-A0B9 
       63.12        16.57         5.19         5.72        21.40        51.68 
TCGA-D8-A1Y0 
       15.52 

$`LRIG2 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A TCGA-A7-A0CD 
       19.20        36.13        88.60        19.56       107.70        38.30 
TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I TCGA-A7-A2KD 
       23.61        31.36        24.26        23.80        21.73        22.32 
TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       11.28        11.97        11.05        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W6 TCGA-AC-A5EI TCGA-AC-A5XS 
       49.05        45.07        29.98        19.79        14.53        19.33 
TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N TCGA-AQ-A54O 
       13.71        50.24        17.79         5.65         2.56        32.91 
TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM TCGA-B6-A0I8 
       98.33        17.23        66.15        57.27        73.35        24.62 
TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 TCGA-C8-A1HL 
       81.63        54.05        32.58        21.44        89.16        10.42 
TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 TCGA-E2-A1LG 
       21.14        14.79        50.79        16.47        73.64        50.07 
TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A440 
       26.99        15.68        52.96        75.02        85.35        24.95 
TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE 
       25.05        14.79        40.08         8.52        14.37        43.43 
TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK 
       48.10        14.27        47.24        20.88        13.68        31.79 
TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q 
        7.96        39.32        18.21       143.15        18.02        78.41 
TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK 
      121.94        73.84        87.25       101.98        55.43       136.73 
TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS 
       99.12        24.79       114.81        92.48       107.93        77.19 
TCGA-A2-A0CT TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 
       75.25        98.99       107.93        56.81        53.13        67.33 
TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN 
       34.55        33.76        61.58        25.22       101.72       134.40 
TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET 
       80.28       118.45        79.76        74.40        72.00        35.05 
TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST 
       34.29        31.82        61.94        24.72        63.29        99.19 
TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 
       54.64        27.12        44.88        50.43        44.28        17.52 
TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 
       17.13         8.38        49.84        20.52        17.46        18.90 
TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG 
       20.75        32.55        25.28        18.21        50.47        21.90 
TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM 
       21.67        49.48        18.61        19.33        48.46        31.73 
TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 
       23.77        23.47        17.36        60.72        22.45        20.25 
TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D 
       19.20        16.47        52.47        42.44        17.19        18.15 
TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT 
      105.34        10.59        36.23        39.65        33.93        91.07 
TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ 
       29.98        32.75        56.28        47.31        35.93        50.37 
TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 
       50.83         7.30        24.39        21.30        23.21        26.96 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ 
       25.15        29.56        23.74        20.61        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC 
       10.29        13.41        14.70        14.93        13.74        14.66 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       13.02        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        43.00        40.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N 
        9.99         9.99        12.00        50.04        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A2B8 
       17.03        38.04        19.23        22.95        73.91        22.26 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
       73.05        99.35        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       87.12        26.04        74.14        33.04        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM 
       32.45         6.48        16.31        14.83        22.19        25.05 
TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU 
       14.99        15.48        23.24        24.79        16.80        14.96 
TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
       17.42         0.33         0.33         0.23         0.33         0.62 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        2.96         1.78         1.71         9.96         7.36         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        0.16         0.33         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        7.96         7.00         7.59         7.17         6.90         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        0.33         0.36         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        69.83        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       44.42        32.78        52.18        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       22.36        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        65.10        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
      113.62       108.72       106.78       108.03       102.31        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       97.08        82.62        11.51        24.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY 
       15.62        32.52        84.10        23.31        64.83        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        37.81        41.82        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       89.00        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        54.21        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
      143.38       281.29        32.58        11.90       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
       50.70        65.52       146.50       112.37       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      127.33        84.59       165.76       129.07       140.88       255.68 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
       68.45       212.25       234.28       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.28        89.46       282.90       169.51        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 
       79.46        18.35        21.01       113.79       206.86       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF 
      245.10        28.27        68.94        58.55        43.59       101.52 
TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
       73.51       139.17       170.17        37.87         7.07        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
       74.99        68.12        18.84       103.63        71.15        62.93 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 
       59.84        20.45        25.55        63.09        81.44        37.74 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0BA 
       39.55        39.16        70.22        84.13        51.58        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        72.23        75.48        74.14        76.60        85.87 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       77.75        49.94        77.95        74.14        41.75        46.39 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        81.73        77.98        67.10        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       29.98        13.91        78.28        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       79.00        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30         9.63        44.81        81.83        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       63.32        30.35        10.78        15.16        63.39        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF 
       24.56        23.08        41.00        52.96        26.50        23.90 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP 
       20.38         5.85         2.37        16.96         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       36.85        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        4.90        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       37.74        30.28        55.63        37.55        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       51.39        51.16        69.93        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       42.28        12.00        55.69        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       31.53        97.48        25.08       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN 
      122.83        33.99        63.35        55.00        45.63        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
       53.98        55.50        28.14        26.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       57.83       130.16        36.82        36.79        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M 
      110.60        20.88        18.64        23.51        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        48.53        12.56        12.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       12.59        12.59        12.92        12.46        12.49        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM 
       10.92        11.34        11.28         0.16        12.03        12.33 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y 
       12.95        12.33        20.25        12.53        12.36        12.95 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       15.45        16.87        16.70         0.03         9.76        24.56 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       14.43        33.99        12.95        56.81        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        13.97        14.17        13.48        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       17.49        16.50        55.50        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       12.03        53.00        14.01        18.97        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       20.09        19.40        20.38        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        15.22        14.73        21.83 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       14.50        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       16.31        16.64        12.99        15.16        43.04        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F 
       15.32         9.93        14.24        14.14        17.42        16.04 
TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M 
       13.45        13.05        14.43        48.03        16.41        13.48 
TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W 
       17.06         1.61        10.09        13.08        12.53        12.26 
TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 
       33.37        18.51        21.67        43.00        34.42        27.52 
TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F 
       46.59        40.41        37.51        40.11        28.44        28.87 
TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S 
       47.15        44.68        40.96        38.24        38.60        33.17 
TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y 
       75.98        43.33        34.26        32.02        31.96        69.34 
TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 
       18.51        63.62        69.96        23.24        19.43        21.04 
TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E 
       23.87        25.05        23.34        22.82        17.29        20.71 
TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K 
       21.63        18.21        12.92        55.63        53.92         9.04 
TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T 
       20.58        11.05        19.56        56.94        14.07        51.39 
TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 
       76.57        53.62        87.22        33.01        32.35        28.50 
TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II 
       37.25        77.65        37.41        70.36        33.73        33.70 
TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU 
       28.44        59.18         3.88        22.19        60.99        11.08 
TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE 
       54.18        60.36        19.66        24.59        75.81        28.90 
TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 
      106.75       102.61         8.75        43.04        52.73        34.55 
TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 
       43.56         8.28        30.61        34.92        38.76        34.82 
TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC 
       32.88        36.82        34.16        36.20        36.56        39.55 
TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI 
       41.62        35.77        35.24        25.84        18.94         9.86 
TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
       24.82        28.27        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       19.99         6.15        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.52         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.84        11.57        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       47.01        64.21        86.96 

  LRIG2 MUTATED LRIG2 WILD-TYPE 
           5.19            0.03 
  LRIG2 MUTATED LRIG2 WILD-TYPE 
          63.12          282.90 
  LRIG2 MUTATED LRIG2 WILD-TYPE 
          16.57           31.00 
[1] "5.2 - 63.1 (16.6)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "6.6"
D68V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  LRIG2 MUTATED         0        1        0        0         4         1
  LRIG2 WILD-TYPE      88       70        6        4       322       226
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  LRIG2 MUTATED           0          1          0          0        0       0
  LRIG2 WILD-TYPE         2        136         24         57       15      12
D68V3, multiclass
            clus
vv           LRIG2 MUTATED LRIG2 WILD-TYPE
  STAGE I                0              88
  STAGE IA               1              70
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              4             322
  STAGE IIB              1             226
  STAGE III              0               2
  STAGE IIIA             1             136
  STAGE IIIB             0              24
  STAGE IIIC             0              57
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  LRIG2 MUTATED     2   5   0   0
  LRIG2 WILD-TYPE 255 559 120  35
D68V4, multiclass
    clus
vv   LRIG2 MUTATED LRIG2 WILD-TYPE
  T1             2             255
  T2             5             559
  T3             0             120
  T4             0              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  LRIG2 MUTATED     4   1   1   0
  LRIG2 WILD-TYPE 458 324 106  68
D68V5, multiclass
    clus
vv   LRIG2 MUTATED LRIG2 WILD-TYPE
  N0             4             458
  N1             1             324
  N2             1             106
  N3             0              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V6, binary
                 cls
clus                0   1
  LRIG2 MUTATED     5   0
  LRIG2 WILD-TYPE 837  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRIG2 MUTATED      5    0
  LRIG2 WILD-TYPE  837   16
   clus
vv  LRIG2 MUTATED LRIG2 WILD-TYPE
  0             5             837
  1             0              16
[1] 2 2
[1] FALSE
D68V7, binary
                 cls
clus                0   1
  LRIG2 MUTATED     7   0
  LRIG2 WILD-TYPE 961   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRIG2 MUTATED      7    0
  LRIG2 WILD-TYPE  961    9
        clus
vv       LRIG2 MUTATED LRIG2 WILD-TYPE
  FEMALE             7             961
  MALE               0               9
[1] 2 2
[1] FALSE
D68V8, binary
                 cls
clus                0   1
  LRIG2 MUTATED     3   4
  LRIG2 WILD-TYPE 384 498
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRIG2 MUTATED      3    4
  LRIG2 WILD-TYPE  384  498
     clus
vv    LRIG2 MUTATED LRIG2 WILD-TYPE
  NO              3             384
  YES             4             498
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  LRIG2 MUTATED                            0                             5
  LRIG2 WILD-TYPE                          1                           706
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  LRIG2 MUTATED                                1                   0
  LRIG2 WILD-TYPE                            171                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  LRIG2 MUTATED                       0                                0
  LRIG2 WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  LRIG2 MUTATED                    0              1
  LRIG2 WILD-TYPE                 14             39
D68V9, multiclass
                                  clus
vv                                 LRIG2 MUTATED LRIG2 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA                5             706
  INFILTRATING LOBULAR CARCINOMA               1             171
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               1              39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  LRIG2 MUTATED                                  0     0
  LRIG2 WILD-TYPE                                1    57
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  LRIG2 MUTATED                           1     6
  LRIG2 WILD-TYPE                       120   699
D68V11, multiclass
                                  clus
vv                                 LRIG2 MUTATED LRIG2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              57
  BLACK OR AFRICAN AMERICAN                    1             120
  WHITE                                        6             699
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V12, binary
                 cls
clus                0   1
  LRIG2 MUTATED     0   6
  LRIG2 WILD-TYPE  34 766
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRIG2 MUTATED      0    6
  LRIG2 WILD-TYPE   34  766
                        clus
vv                       LRIG2 MUTATED LRIG2 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO             6             766
[1] 2 2
[1] FALSE

Clustering(69) Variable = RIBC1 MUTATION ANALYSIS
D69V1, survival
                 sevent
clus2               0   1
  RIBC1 MUTATED     4   0
  RIBC1 WILD-TYPE 822 138
  RIBC1 MUTATED RIBC1 WILD-TYPE 
              4             960 
  RIBC1 MUTATED RIBC1 WILD-TYPE 
              0             138 
$`RIBC1 MUTATED`
TCGA-A2-A0T5 TCGA-A8-A0A6 TCGA-AN-A046 TCGA-C8-A1HN 
       17.46        21.04         0.33        12.95 

$`RIBC1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       20.52        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY 
       35.93        50.37        50.83         7.30        24.39        21.30 
TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG 
       23.21        26.96        21.14        21.90        35.31        34.29 
TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC 
       35.47        30.61        37.45        35.67        33.11        29.79 
TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J 
       31.73        20.19        25.15        29.56        23.74        20.61 
TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA 
       11.34        10.59        10.29        13.41        14.70        14.93 
TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D 
       13.74        14.66        14.50        21.17        17.92        14.73 
TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R 
       12.10        10.72        13.02        13.02         1.02        17.98 
TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 
       31.00        26.01         1.02        17.03        53.98         9.01 
TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J 
       43.00        33.99        18.97        18.97        14.01        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 
       31.00         0.99       112.08        43.00        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       41.98        12.00         9.99         9.99        12.00        50.04 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       33.07         1.02        25.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A7 
        0.99        14.01        12.00        19.04        13.02         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.53         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27       113.62       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
      102.31        98.27        82.68        70.42        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      112.77        97.84       105.27       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       71.05        93.83       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       63.62        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 
       10.59        77.62       143.38       281.29        32.58        11.90 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       52.96        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07        53.98        55.50        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       26.14        38.60        83.31        57.83       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.79        20.12        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
        0.16        12.03        12.33        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       70.36        33.73        33.70        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 
       22.19        60.99        11.08        54.18        60.36        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       24.59        75.81        28.90       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        52.73        34.55        43.56         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        38.76        34.82        32.88        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       36.20        36.56        39.55        41.62        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       25.84        18.94         9.86        24.82        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02        11.15        48.23        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       32.09        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       20.12         0.69        38.99         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       12.33        29.72         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       26.40        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        28.77        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        17.52         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 
       18.12         2.60        62.47        11.84        11.57        32.75 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U 
       17.06        15.32        14.70        14.47        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  RIBC1 MUTATED RIBC1 WILD-TYPE 
           0.33            0.03 
  RIBC1 MUTATED RIBC1 WILD-TYPE 
          21.04          282.90 
  RIBC1 MUTATED RIBC1 WILD-TYPE 
         15.205          31.000 
[1] "0.3 - 21.0 (15.2)"  "0.0 - 282.9 (31.0)"
[1] "hr="    "440000"
D69V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  RIBC1 MUTATED         0        0        0        0         3         0
  RIBC1 WILD-TYPE      88       71        6        4       323       227
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  RIBC1 MUTATED           0          0          0          1        0       0
  RIBC1 WILD-TYPE         2        137         24         56       15      12
D69V3, multiclass
            clus
vv           RIBC1 MUTATED RIBC1 WILD-TYPE
  STAGE I                0              88
  STAGE IA               0              71
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              3             323
  STAGE IIB              0             227
  STAGE III              0               2
  STAGE IIIA             0             137
  STAGE IIIB             0              24
  STAGE IIIC             1              56
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  RIBC1 MUTATED     0   4   0   0
  RIBC1 WILD-TYPE 257 560 120  35
D69V4, multiclass
    clus
vv   RIBC1 MUTATED RIBC1 WILD-TYPE
  T1             0             257
  T2             4             560
  T3             0             120
  T4             0              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  RIBC1 MUTATED     3   0   0   1
  RIBC1 WILD-TYPE 459 325 107  67
D69V5, multiclass
    clus
vv   RIBC1 MUTATED RIBC1 WILD-TYPE
  N0             3             459
  N1             0             325
  N2             0             107
  N3             1              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V6, binary
                 cls
clus                0   1
  RIBC1 MUTATED     4   0
  RIBC1 WILD-TYPE 838  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIBC1 MUTATED      4    0
  RIBC1 WILD-TYPE  838   16
   clus
vv  RIBC1 MUTATED RIBC1 WILD-TYPE
  0             4             838
  1             0              16
[1] 2 2
[1] FALSE
D69V7, binary
                 cls
clus                0   1
  RIBC1 MUTATED     4   0
  RIBC1 WILD-TYPE 964   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIBC1 MUTATED      4    0
  RIBC1 WILD-TYPE  964    9
        clus
vv       RIBC1 MUTATED RIBC1 WILD-TYPE
  FEMALE             4             964
  MALE               0               9
[1] 2 2
[1] FALSE
D69V8, binary
                 cls
clus                0   1
  RIBC1 MUTATED     3   1
  RIBC1 WILD-TYPE 384 501
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIBC1 MUTATED      3    1
  RIBC1 WILD-TYPE  384  501
     clus
vv    RIBC1 MUTATED RIBC1 WILD-TYPE
  NO              3             384
  YES             1             501
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  RIBC1 MUTATED                            0                             3
  RIBC1 WILD-TYPE                          1                           708
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  RIBC1 MUTATED                                1                   0
  RIBC1 WILD-TYPE                            171                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  RIBC1 MUTATED                       0                                0
  RIBC1 WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  RIBC1 MUTATED                    0              0
  RIBC1 WILD-TYPE                 14             40
D69V9, multiclass
                                  clus
vv                                 RIBC1 MUTATED RIBC1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA                3             708
  INFILTRATING LOBULAR CARCINOMA               1             171
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               0              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V10, continuous
[1] "Remove cluster labels:" "RIBC1 MUTATED"         
clus
  RIBC1 MUTATED RIBC1 WILD-TYPE 
              2             824 
     TCGA-A1-A0SP      TCGA-A2-A04V      TCGA-A2-A04Y      TCGA-A2-A0CQ 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A1G4      TCGA-A2-A25A      TCGA-A7-A0CD      TCGA-A7-A13G 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A7-A26E      TCGA-A7-A26F      TCGA-A7-A26H      TCGA-A7-A26I 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A7-A2KD      TCGA-A7-A3J1      TCGA-A7-A426      TCGA-A7-A5ZX 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AC-A3W5      TCGA-AC-A3W6      TCGA-AC-A5EI      TCGA-AC-A5XS 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AC-A62X      TCGA-AO-A0JI      TCGA-AO-A1KT      TCGA-AQ-A0Y5 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AQ-A54N      TCGA-AQ-A54O      TCGA-AR-A1AM      TCGA-AR-A1AR 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A2LL      TCGA-AR-A2LR      TCGA-AR-A5QM      TCGA-BH-A0B6 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0DO      TCGA-BH-A0EA      TCGA-BH-A18H      TCGA-BH-A1F5 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A146      TCGA-E2-A158      TCGA-E2-A1BC      TCGA-E2-A1L8 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A1LG      TCGA-E2-A2P5      TCGA-EW-A1J5      TCGA-EW-A1P3 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-GM-A2DD      TCGA-GM-A2DO      TCGA-LL-A440      TCGA-LL-A50Y 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-LL-A5YP      TCGA-OL-A5RU      TCGA-A1-A0SB      TCGA-A1-A0SD 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A1-A0SE      TCGA-A1-A0SF      TCGA-A1-A0SG      TCGA-A1-A0SH 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A1-A0SI      TCGA-A1-A0SJ      TCGA-A1-A0SK      TCGA-A1-A0SM 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A1-A0SN      TCGA-A1-A0SQ      TCGA-A2-A04N      TCGA-A2-A04P 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A04Q      TCGA-A2-A04R      TCGA-A2-A04T      TCGA-A2-A04U 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A04W      TCGA-A2-A04X      TCGA-A2-A0CK      TCGA-A2-A0CL 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A0CM      TCGA-A2-A0CO      TCGA-A2-A0CP      TCGA-A2-A0CR 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A0CS      TCGA-A2-A0CT      TCGA-A2-A0CU      TCGA-A2-A0CV 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A0CW      TCGA-A2-A0CX      TCGA-A2-A0CZ      TCGA-A2-A0D0 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A0D1      TCGA-A2-A0D2      TCGA-A2-A0D3      TCGA-A2-A0D4 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A0EM      TCGA-A2-A0EN      TCGA-A2-A0EO      TCGA-A2-A0EP 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A0EQ      TCGA-A2-A0ER      TCGA-A2-A0ES      TCGA-A2-A0ET 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A0EU      TCGA-A2-A0EV      TCGA-A2-A0EW      TCGA-A2-A0EX 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A0EY      TCGA-A2-A0ST      TCGA-A2-A0SU      TCGA-A2-A0SV 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A0SW      TCGA-A2-A0SX      TCGA-A2-A0SY      TCGA-A2-A0T0 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A0T1      TCGA-A2-A0T2      TCGA-A2-A0T3      TCGA-A2-A0T4 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A0T6      TCGA-A2-A0T7      TCGA-A2-A0YC      TCGA-A2-A0YD 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A0YE      TCGA-A2-A0YF      TCGA-A2-A0YG      TCGA-A2-A0YH 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A0YI      TCGA-A2-A0YJ      TCGA-A2-A0YK      TCGA-A2-A0YL 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A0YM      TCGA-A2-A0YT      TCGA-A2-A1FV      TCGA-A2-A1FW 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A1FX      TCGA-A2-A1FZ      TCGA-A2-A1G0      TCGA-A2-A1G1 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A1G6      TCGA-A2-A259      TCGA-A2-A25B      TCGA-A2-A25C 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A25D      TCGA-A2-A25E      TCGA-A2-A25F      TCGA-A2-A3KC 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A3KD      TCGA-A2-A3XS      TCGA-A2-A3XT      TCGA-A2-A3XU 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A3XV      TCGA-A2-A3XW      TCGA-A2-A3XX      TCGA-A2-A3XY 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A3XZ      TCGA-A2-A3Y0      TCGA-A2-A4RW      TCGA-A2-A4RX 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A4RY      TCGA-A2-A4S0      TCGA-A2-A4S1      TCGA-A2-A4S2 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A2-A4S3      TCGA-A7-A0CE      TCGA-A7-A0CG      TCGA-A7-A0CH 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A7-A0CJ      TCGA-A7-A0D9      TCGA-A7-A0DA      TCGA-A7-A0DB 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A7-A0DC      TCGA-A7-A13D      TCGA-A7-A13E      TCGA-A7-A13F 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A7-A13H      TCGA-A7-A26G      TCGA-A7-A26J      TCGA-A7-A3IY 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A7-A3J0      TCGA-A7-A3RF      TCGA-A7-A425      TCGA-A7-A4SA 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A7-A4SB      TCGA-A7-A4SC      TCGA-A7-A4SD      TCGA-A7-A4SE 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-A7-A4SF      TCGA-A7-A56D      TCGA-A7-A5ZV      TCGA-A7-A5ZW 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AC-A23C      TCGA-AC-A23E      TCGA-AC-A23G      TCGA-AC-A2B8 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AC-A2BK      TCGA-AC-A2BM      TCGA-AC-A2FB      TCGA-AC-A2FE 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AC-A2FF      TCGA-AC-A2FG      TCGA-AC-A2FK      TCGA-AC-A2FM 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AC-A2FO      TCGA-AC-A2QH      TCGA-AC-A2QI      TCGA-AC-A2QJ 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AC-A3BB      TCGA-AC-A3EH      TCGA-AC-A3HN      TCGA-AC-A3OD 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AC-A3QP      TCGA-AC-A3TM      TCGA-AC-A3TN      TCGA-AC-A3W7 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AC-A3YI      TCGA-AC-A3YJ      TCGA-AC-A5EH      TCGA-AC-A5XU 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AC-A62Y      TCGA-AN-A03X      TCGA-AN-A03Y      TCGA-AN-A041 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AN-A049      TCGA-AN-A04A      TCGA-AN-A04C      TCGA-AN-A04D 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AN-A0AJ      TCGA-AN-A0AK      TCGA-AN-A0AL      TCGA-AN-A0AM 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AN-A0AR      TCGA-AN-A0AS      TCGA-AN-A0AT      TCGA-AN-A0FD 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AN-A0FF      TCGA-AN-A0FJ      TCGA-AN-A0FK      TCGA-AN-A0FL 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AN-A0FN      TCGA-AN-A0FS      TCGA-AN-A0FT      TCGA-AN-A0FV 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AN-A0FW      TCGA-AN-A0FX      TCGA-AN-A0FY      TCGA-AN-A0FZ 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AN-A0G0      TCGA-AN-A0XL      TCGA-AN-A0XN      TCGA-AN-A0XO 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AN-A0XP      TCGA-AN-A0XR      TCGA-AN-A0XS      TCGA-AN-A0XT 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AN-A0XU      TCGA-AN-A0XV      TCGA-AN-A0XW      TCGA-AO-A03L 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AO-A03M      TCGA-AO-A03N      TCGA-AO-A03O      TCGA-AO-A03P 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AO-A03R      TCGA-AO-A03T      TCGA-AO-A03U      TCGA-AO-A03V 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AO-A0J2      TCGA-AO-A0J3      TCGA-AO-A0J4      TCGA-AO-A0J5 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AO-A0J6      TCGA-AO-A0J7      TCGA-AO-A0J8      TCGA-AO-A0J9 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AO-A0JA      TCGA-AO-A0JB      TCGA-AO-A0JC      TCGA-AO-A0JD 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AO-A0JE      TCGA-AO-A0JF      TCGA-AO-A0JJ      TCGA-AO-A0JL 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AO-A0JM      TCGA-AO-A124      TCGA-AO-A125      TCGA-AO-A126 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AO-A128      TCGA-AO-A129      TCGA-AO-A12A      TCGA-AO-A12B 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AO-A12D      TCGA-AO-A12E      TCGA-AO-A12F      TCGA-AO-A12G 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AO-A12H      TCGA-AO-A1KO      TCGA-AO-A1KP      TCGA-AO-A1KR 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AO-A1KS      TCGA-AQ-A04H      TCGA-AQ-A04J      TCGA-AQ-A04L 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AQ-A1H2      TCGA-AQ-A1H3      TCGA-AR-A0TS      TCGA-AR-A0TU 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A0TX      TCGA-AR-A0TY      TCGA-AR-A0U0      TCGA-AR-A0U1 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A0U2      TCGA-AR-A0U3      TCGA-AR-A1AH      TCGA-AR-A1AI 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A1AJ      TCGA-AR-A1AK      TCGA-AR-A1AL      TCGA-AR-A1AN 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A1AO      TCGA-AR-A1AP      TCGA-AR-A1AQ      TCGA-AR-A1AS 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A1AT      TCGA-AR-A1AU      TCGA-AR-A1AV      TCGA-AR-A1AW 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A1AX      TCGA-AR-A1AY      TCGA-AR-A24H      TCGA-AR-A24K 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A24L      TCGA-AR-A24M      TCGA-AR-A24N      TCGA-AR-A24O 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A24P      TCGA-AR-A24Q      TCGA-AR-A24R      TCGA-AR-A24S 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A24T      TCGA-AR-A24U      TCGA-AR-A24V      TCGA-AR-A24W 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A24X      TCGA-AR-A24Z      TCGA-AR-A250      TCGA-AR-A251 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A252      TCGA-AR-A254      TCGA-AR-A255      TCGA-AR-A256 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A2LE      TCGA-AR-A2LH      TCGA-AR-A2LJ      TCGA-AR-A2LK 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A2LM      TCGA-AR-A2LN      TCGA-AR-A2LO      TCGA-AR-A2LQ 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-AR-A5QN      TCGA-AR-A5QP      TCGA-AR-A5QQ      TCGA-B6-A0I1 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-B6-A0I2      TCGA-B6-A0I5      TCGA-B6-A0I6      TCGA-B6-A0IA 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-B6-A0IB      TCGA-B6-A0IE      TCGA-B6-A0IG      TCGA-B6-A0IH 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-B6-A0IJ      TCGA-B6-A0IK      TCGA-B6-A0IM      TCGA-B6-A0IO 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-B6-A0IP      TCGA-B6-A0IQ      TCGA-B6-A0RE      TCGA-B6-A0RG 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-B6-A0RH      TCGA-B6-A0RI      TCGA-B6-A0RN      TCGA-B6-A0RO 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-B6-A0RP      TCGA-B6-A0RQ      TCGA-B6-A0RT      TCGA-B6-A0RU 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-B6-A0RV      TCGA-B6-A0WT      TCGA-B6-A0WV      TCGA-B6-A0WW 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-B6-A0WX      TCGA-B6-A0WY      TCGA-B6-A0WZ      TCGA-B6-A0X0 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-B6-A0X1      TCGA-B6-A0X4      TCGA-B6-A0X5      TCGA-B6-A1KC 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-B6-A1KF      TCGA-B6-A1KI      TCGA-B6-A1KN      TCGA-B6-A2IU 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-B6-A3ZX      TCGA-B6-A400      TCGA-B6-A401      TCGA-B6-A402 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-B6-A408      TCGA-B6-A409      TCGA-B6-A40B      TCGA-B6-A40C 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0AU      TCGA-BH-A0AV      TCGA-BH-A0AW      TCGA-BH-A0AY 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0AZ      TCGA-BH-A0B0      TCGA-BH-A0B1      TCGA-BH-A0B3 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0B4      TCGA-BH-A0B5      TCGA-BH-A0B7      TCGA-BH-A0B8 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0B9      TCGA-BH-A0BA      TCGA-BH-A0BC      TCGA-BH-A0BD 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0BF      TCGA-BH-A0BG      TCGA-BH-A0BJ      TCGA-BH-A0BL 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0BM      TCGA-BH-A0BO      TCGA-BH-A0BP      TCGA-BH-A0BQ 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0BR      TCGA-BH-A0BS      TCGA-BH-A0BV      TCGA-BH-A0BW 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0BZ      TCGA-BH-A0C0      TCGA-BH-A0C1      TCGA-BH-A0C3 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0C7      TCGA-BH-A0DD      TCGA-BH-A0DE      TCGA-BH-A0DG 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0DH      TCGA-BH-A0DI      TCGA-BH-A0DK      TCGA-BH-A0DL 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0DP      TCGA-BH-A0DQ      TCGA-BH-A0DS      TCGA-BH-A0DT 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0DV      TCGA-BH-A0DX      TCGA-BH-A0DZ      TCGA-BH-A0E0 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0E1      TCGA-BH-A0E2      TCGA-BH-A0E6      TCGA-BH-A0E7 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0E9      TCGA-BH-A0EB      TCGA-BH-A0EE      TCGA-BH-A0EI 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0GY      TCGA-BH-A0GZ      TCGA-BH-A0H0      TCGA-BH-A0H3 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0H5      TCGA-BH-A0H6      TCGA-BH-A0H7      TCGA-BH-A0H9 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0HA      TCGA-BH-A0HB      TCGA-BH-A0HF      TCGA-BH-A0HI 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0HK      TCGA-BH-A0HL      TCGA-BH-A0HN      TCGA-BH-A0HO 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0HP      TCGA-BH-A0HQ      TCGA-BH-A0HU      TCGA-BH-A0HW 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0HX      TCGA-BH-A0HY      TCGA-BH-A0RX      TCGA-BH-A0W3 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A0W5      TCGA-BH-A0W7      TCGA-BH-A0WA      TCGA-BH-A18F 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A18G      TCGA-BH-A18I      TCGA-BH-A18K      TCGA-BH-A18L 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A18M      TCGA-BH-A18N      TCGA-BH-A18P      TCGA-BH-A18Q 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A18R      TCGA-BH-A18S      TCGA-BH-A18U      TCGA-BH-A18V 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A1EO      TCGA-BH-A1ES      TCGA-BH-A1ET      TCGA-BH-A1EV 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A1EW      TCGA-BH-A1EX      TCGA-BH-A1EY      TCGA-BH-A1F0 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A1F2      TCGA-BH-A1F6      TCGA-BH-A1F8      TCGA-BH-A1FC 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A1FD      TCGA-BH-A1FE      TCGA-BH-A1FH      TCGA-BH-A1FJ 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A1FL      TCGA-BH-A1FM      TCGA-BH-A1FN      TCGA-BH-A1FR 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A1FU      TCGA-BH-A201      TCGA-BH-A202      TCGA-BH-A203 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A204      TCGA-BH-A208      TCGA-BH-A209      TCGA-BH-A28O 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A28Q      TCGA-BH-A2L8      TCGA-BH-A42V      TCGA-BH-A5IZ 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-BH-A5J0      TCGA-C8-A12K      TCGA-C8-A12T      TCGA-C8-A12V 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-C8-A12Z      TCGA-C8-A131      TCGA-C8-A132      TCGA-C8-A135 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-C8-A273      TCGA-C8-A3M7      TCGA-D8-A13Y      TCGA-D8-A13Z 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A140      TCGA-D8-A141      TCGA-D8-A142      TCGA-D8-A143 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A145      TCGA-D8-A147      TCGA-D8-A1J8      TCGA-D8-A1J9 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A1JB      TCGA-D8-A1JC      TCGA-D8-A1JD      TCGA-D8-A1JE 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A1JF      TCGA-D8-A1JG      TCGA-D8-A1JI      TCGA-D8-A1JJ 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A1JK      TCGA-D8-A1JL      TCGA-D8-A1JM      TCGA-D8-A1JN 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A1JS      TCGA-D8-A1JT      TCGA-D8-A1JU      TCGA-D8-A1X5 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A1X6      TCGA-D8-A1X7      TCGA-D8-A1X8      TCGA-D8-A1X9 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A1XA      TCGA-D8-A1XB      TCGA-D8-A1XC      TCGA-D8-A1XF 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A1XG      TCGA-D8-A1XJ      TCGA-D8-A1XK      TCGA-D8-A1XL 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A1XM      TCGA-D8-A1XO      TCGA-D8-A1XQ      TCGA-D8-A1XR 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A1XS      TCGA-D8-A1XT      TCGA-D8-A1XU      TCGA-D8-A1XV 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A1XW      TCGA-D8-A1XY      TCGA-D8-A1XZ      TCGA-D8-A1Y0 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A1Y1      TCGA-D8-A1Y2      TCGA-D8-A1Y3      TCGA-D8-A27E 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A27F      TCGA-D8-A27G      TCGA-D8-A27I      TCGA-D8-A27K 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A27L      TCGA-D8-A27N      TCGA-D8-A27P      TCGA-D8-A27R 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A27T      TCGA-D8-A27V      TCGA-D8-A27W      TCGA-D8-A3Z5 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-D8-A3Z6      TCGA-D8-A4Z1      TCGA-E2-A105      TCGA-E2-A107 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A108      TCGA-E2-A109      TCGA-E2-A10A      TCGA-E2-A10B 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A10C      TCGA-E2-A10E      TCGA-E2-A10F      TCGA-E2-A14N 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A14O      TCGA-E2-A14P      TCGA-E2-A14Q      TCGA-E2-A14R 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A14S      TCGA-E2-A14T      TCGA-E2-A14U      TCGA-E2-A14V 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A14W      TCGA-E2-A14X      TCGA-E2-A14Y      TCGA-E2-A14Z 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A150      TCGA-E2-A152      TCGA-E2-A153      TCGA-E2-A154 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A155      TCGA-E2-A156      TCGA-E2-A159      TCGA-E2-A15A 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A15C      TCGA-E2-A15D      TCGA-E2-A15E      TCGA-E2-A15F 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A15G      TCGA-E2-A15H      TCGA-E2-A15I      TCGA-E2-A15J 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A15K      TCGA-E2-A15L      TCGA-E2-A15M      TCGA-E2-A15P 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A15R      TCGA-E2-A15S      TCGA-E2-A15T      TCGA-E2-A1AZ 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A1B0      TCGA-E2-A1B1      TCGA-E2-A1B4      TCGA-E2-A1B5 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A1B6      TCGA-E2-A1BD      TCGA-E2-A1IE      TCGA-E2-A1IF 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A1IG      TCGA-E2-A1IH      TCGA-E2-A1II      TCGA-E2-A1IJ 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A1IK      TCGA-E2-A1IL      TCGA-E2-A1IN      TCGA-E2-A1IO 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A1IU      TCGA-E2-A1L6      TCGA-E2-A1L7      TCGA-E2-A1L9 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A1LA      TCGA-E2-A1LB      TCGA-E2-A1LE      TCGA-E2-A1LH 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A1LI      TCGA-E2-A1LK      TCGA-E2-A1LL      TCGA-E2-A1LS 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A2P6      TCGA-E2-A3DX      TCGA-E2-A56Z      TCGA-E2-A570 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E2-A573      TCGA-E2-A574      TCGA-E9-A1N3      TCGA-E9-A1N4 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A1N5      TCGA-E9-A1N8      TCGA-E9-A1N9      TCGA-E9-A1NA 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A1NC      TCGA-E9-A1ND      TCGA-E9-A1NE      TCGA-E9-A1NF 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A1NG      TCGA-E9-A1NH      TCGA-E9-A1NI      TCGA-E9-A1QZ 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A1R0      TCGA-E9-A1R2      TCGA-E9-A1R3      TCGA-E9-A1R4 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A1R5      TCGA-E9-A1R6      TCGA-E9-A1R7      TCGA-E9-A1RA 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A1RB      TCGA-E9-A1RC      TCGA-E9-A1RD      TCGA-E9-A1RE 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A1RF      TCGA-E9-A1RG      TCGA-E9-A1RH      TCGA-E9-A1RI 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A226      TCGA-E9-A227      TCGA-E9-A228      TCGA-E9-A229 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A22A      TCGA-E9-A22B      TCGA-E9-A22D      TCGA-E9-A22E 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A22G      TCGA-E9-A22H      TCGA-E9-A243      TCGA-E9-A244 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A245      TCGA-E9-A247      TCGA-E9-A248      TCGA-E9-A249 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A24A      TCGA-E9-A295      TCGA-E9-A2JS      TCGA-E9-A2JT 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A3HO      TCGA-E9-A3Q9      TCGA-E9-A3QA      TCGA-E9-A3X8 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A54X      TCGA-E9-A54Y      TCGA-E9-A5FK      TCGA-E9-A5FL 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-E9-A5UO      TCGA-E9-A5UP      TCGA-EW-A1IW      TCGA-EW-A1IX 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-EW-A1IY      TCGA-EW-A1IZ      TCGA-EW-A1J1      TCGA-EW-A1J2 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-EW-A1J3      TCGA-EW-A1J6      TCGA-EW-A1OV      TCGA-EW-A1OX 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-EW-A1OY      TCGA-EW-A1OZ      TCGA-EW-A1P0      TCGA-EW-A1P1 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-EW-A1P4      TCGA-EW-A1P5      TCGA-EW-A1P6      TCGA-EW-A1P7 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-EW-A1P8      TCGA-EW-A1PA      TCGA-EW-A1PB      TCGA-EW-A1PC 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-EW-A1PD      TCGA-EW-A1PE      TCGA-EW-A1PG      TCGA-EW-A1PH 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-EW-A2FR      TCGA-EW-A2FS      TCGA-EW-A2FV      TCGA-EW-A2FW 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-EW-A3E8      TCGA-EW-A3U0      TCGA-EW-A423      TCGA-GI-A2C8 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-GI-A2C9      TCGA-GM-A2D9      TCGA-GM-A2DA      TCGA-GM-A2DB 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-GM-A2DC      TCGA-GM-A2DF      TCGA-GM-A2DH      TCGA-GM-A2DI 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-GM-A2DK      TCGA-GM-A2DL      TCGA-GM-A2DM      TCGA-GM-A2DN 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-GM-A3NW      TCGA-GM-A3NY      TCGA-GM-A3XG      TCGA-GM-A3XL 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-GM-A3XN      TCGA-GM-A4E0      TCGA-GM-A5PV      TCGA-GM-A5PX 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-HN-A2NL      TCGA-HN-A2OB      TCGA-JL-A3YW      TCGA-JL-A3YX 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-LL-A441      TCGA-LL-A5YL      TCGA-LL-A5YN      TCGA-LL-A5YO 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-LQ-A4E4      TCGA-MS-A51U      TCGA-OK-A5Q2      TCGA-OL-A5RV 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-OL-A5RW      TCGA-OL-A5RY      TCGA-OL-A5S0      TCGA-OL-A66I 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
     TCGA-OL-A66J      TCGA-PE-A5DC      TCGA-PE-A5DD      TCGA-PE-A5DE 
"RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" "RIBC1 WILD-TYPE" 
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  RIBC1 MUTATED                                  0     1
  RIBC1 WILD-TYPE                                1    56
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  RIBC1 MUTATED                           0     2
  RIBC1 WILD-TYPE                       121   703
D69V11, multiclass
                                  clus
vv                                 RIBC1 MUTATED RIBC1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        1              56
  BLACK OR AFRICAN AMERICAN                    0             121
  WHITE                                        2             703
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V12, binary
                 cls
clus                0   1
  RIBC1 MUTATED     0   3
  RIBC1 WILD-TYPE  34 769
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIBC1 MUTATED      0    3
  RIBC1 WILD-TYPE   34  769
                        clus
vv                       RIBC1 MUTATED RIBC1 WILD-TYPE
  HISPANIC OR LATINO                 0              34
  NOT HISPANIC OR LATINO             3             769
[1] 2 2
[1] FALSE

Clustering(70) Variable = PLK2 MUTATION ANALYSIS
D70V1, survival
                sevent
clus2              0   1
  PLK2 MUTATED     8   1
  PLK2 WILD-TYPE 818 137
  PLK2 MUTATED PLK2 WILD-TYPE 
             9            955 
  PLK2 MUTATED PLK2 WILD-TYPE 
             1            137 
$`PLK2 MUTATED`
TCGA-A8-A07I TCGA-AC-A23H TCGA-AN-A046 TCGA-AR-A5QP TCGA-B6-A0RE TCGA-BH-A2L8 
       14.01         5.72         0.33        38.96       255.68        20.12 
TCGA-D8-A1JT TCGA-D8-A1X8 TCGA-OL-A5S0 
       13.32        25.74        20.38 

$`PLK2 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07J 
        9.01        43.00        33.99        18.97        18.97        12.00 
TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W 
       32.05         9.99        10.98         8.98        24.99         9.99 
TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B 
       45.07        18.05        36.95        13.02         0.99        38.01 
TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O 
       28.96        19.96        12.00        37.05         9.99        31.00 
TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 
       31.00         0.99       112.08        43.00        40.01        30.97 
TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D 
       41.98        12.00         9.99         9.99        12.00        50.04 
TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V 
       33.07         1.02        25.02         8.98        19.04        15.02 
TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 
        0.99        14.01        12.00        19.04        13.02        21.04 
TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E 
        0.99        27.02        17.03        38.04        19.23        22.95 
TCGA-AC-A23G TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
       73.91        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.53         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27       113.62       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
      102.31        98.27        82.68        70.42        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      112.77        97.84       105.27       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       71.05        93.83       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QQ 
       63.62        38.17        39.39        40.54        33.30        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA 
       77.62       143.38       281.29        32.58        11.90       275.87 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      129.57        50.70        65.52       146.50       112.37       233.62 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
       18.77       127.33        84.59       165.76       129.07       140.88 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
       68.45       212.25       234.28       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.28        89.46       282.90       169.51        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 
       79.46        18.35        21.01       113.79       206.86       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF 
      245.10        28.27        68.94        58.55        43.59       101.52 
TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
       73.51       139.17       170.17        37.87         7.07        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
       74.99        68.12        18.84       103.63        71.15        62.93 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 
       59.84        20.45        25.55        63.09        81.44        37.74 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 
       39.55        39.16        70.22        84.13        51.58        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ 
       37.22        32.02        18.21        43.53        61.51        21.70 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       74.89        61.68        72.23        75.48        74.14        76.60 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 
       85.87        77.75        49.94        77.95        74.14        41.75 
TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       46.39        89.06        90.97        81.73        77.98        67.10 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ 
       38.01        29.98        13.91        78.28        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        79.00        67.86        70.88        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB 
       15.68        14.30         9.63        44.81        81.83        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        63.32        30.35        10.78        15.16        63.39 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       53.26        24.56        23.08        41.00        52.96        26.50 
TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO 
       23.90        20.38         5.85         2.37        16.96         2.50 
TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY 
       13.61        36.85        12.89        51.32        27.25        50.79 
TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA 
        5.59        23.93        24.95        42.35        44.81        23.05 
TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L 
       32.91         4.90        35.93        20.12        90.84        26.66 
TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S 
       72.56        37.74        30.28        55.63        37.55        66.05 
TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES 
        7.36        51.39        51.16        69.93        91.99       113.82 
TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY 
       82.85        42.28        12.00        55.69        49.58        17.69 
TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD 
       25.81        31.53        97.48        25.08       114.15        33.17 
TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM 
       74.73       122.83        33.99        63.35        55.00        45.63 
TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 
       72.07        53.98        55.50        28.14        26.14        38.60 
TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A42T 
       83.31        57.83       130.16        36.82        36.79        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M 
      110.60        20.88        18.64        23.51        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        48.53        12.56        12.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       12.59        12.59        12.92        12.46        12.49        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM 
       10.92        11.34        11.28         0.16        12.03        12.33 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y 
       12.95        12.33        20.25        12.53        12.36        12.95 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       15.45        16.87        16.70         0.03         9.76        24.56 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       14.43        33.99        12.95        56.81        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        13.97        14.17        13.48        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       17.49        16.50        55.50        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       12.03        53.00        14.01        18.97        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JU 
       20.09        19.40        20.38        21.01        12.20        14.70 
TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       18.58        17.79        16.73        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       12.39        15.22        14.73        21.83        14.50        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       17.69        55.30        16.41        15.85        16.31        16.64 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 
       12.99        15.16        43.04        16.54        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
        9.93        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       13.05        14.43        48.03        16.41        13.48        17.06 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        1.61        10.09        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 
       18.51        21.67        43.00        34.42        27.52        46.59 
TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N 
       40.41        37.51        40.11        28.44        28.87        47.15 
TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T 
       44.68        40.96        38.24        38.60        33.17        75.98 
TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z 
       43.33        34.26        32.02        31.96        69.34        18.51 
TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 
       63.62        69.96        23.24        19.43        21.04        23.87 
TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F 
       25.05        23.34        22.82        17.29        20.71        21.63 
TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L 
       18.21        12.92        55.63        53.92         9.04        20.58 
TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ 
       11.05        19.56        56.94        14.07        51.39        76.57 
TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD 
       53.62        87.22        33.01        32.35        28.50        37.25 
TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ 
       77.65        37.41        70.36        33.73        33.70        28.44 
TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 
       59.18         3.88        22.19        60.99        11.08        54.18 
TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH 
       60.36        19.66        24.59        75.81        28.90       106.75 
TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX 
      102.61         8.75        43.04        52.73        34.55        43.56 
TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 
        8.28        30.61        34.92        38.76        34.82        32.88 
TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND 
       36.82        34.16        36.20        36.56        39.55        41.62 
TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ 
       35.77        35.24        25.84        18.94         9.86        24.82 
TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 
       28.27        34.95         2.56         6.12         3.02        11.15 
TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE 
       48.23        45.01        32.09        40.24         1.12        46.65 
TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 
        6.58        21.27        46.59        47.64        34.45        32.05 
TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E 
       42.25        37.74        39.09        38.37        41.03        41.72 
TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 
       40.73        40.50        20.12         0.69        38.99         1.94 
TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO 
        7.13        24.56        12.33        29.72         9.47        38.07 
TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK 
       32.91        30.18        30.44        23.90        23.84        26.70 
TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY 
        0.79        25.81        26.40        12.20        39.72         8.48 
TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV 
       18.21        18.90        13.25        16.57        28.77        25.94 
TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 
       29.95        29.85        40.41        41.13        39.78        29.82 
TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB 
       23.11        18.48        30.08         7.86        18.90        19.99 
TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR 
        6.15        13.94        10.52        34.55        19.96        55.00 
TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 
       52.73        25.91        22.09        34.03        17.49        17.52 
TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC 
        7.40       109.87        59.57       216.76        79.10        83.34 
TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM 
       70.85        72.10        85.15        86.96       115.69       106.06 
TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN 
      101.62       110.50        38.20        43.73        69.30        66.38 
TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW 
       72.03        13.55        18.12         2.60        62.47        11.84 
TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO 
       11.57        32.75        17.06        15.32        14.70        14.47 
TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 
       27.91        22.39         2.10        36.30        58.52        31.99 
TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ 
       58.62        34.92        36.36        28.87        24.72        22.32 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD 
       26.70        23.47        65.62        41.92        47.01        64.21 
TCGA-PE-A5DE 
       86.96 

  PLK2 MUTATED PLK2 WILD-TYPE 
          0.33           0.03 
  PLK2 MUTATED PLK2 WILD-TYPE 
        255.68         282.90 
  PLK2 MUTATED PLK2 WILD-TYPE 
         20.12          31.00 
[1] "0.3 - 255.7 (20.1)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.5"
D70V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  PLK2 MUTATED         0        0        0        0         4         2
  PLK2 WILD-TYPE      88       71        6        4       322       225
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  PLK2 MUTATED           0          2          0          0        0       1
  PLK2 WILD-TYPE         2        135         24         57       15      11
D70V3, multiclass
            clus
vv           PLK2 MUTATED PLK2 WILD-TYPE
  STAGE I               0             88
  STAGE IA              0             71
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             4            322
  STAGE IIB             2            225
  STAGE III             0              2
  STAGE IIIA            2            135
  STAGE IIIB            0             24
  STAGE IIIC            0             57
  STAGE IV              0             15
  STAGE X               1             11
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  PLK2 MUTATED     1   7   0   0
  PLK2 WILD-TYPE 256 557 120  35
D70V4, multiclass
    clus
vv   PLK2 MUTATED PLK2 WILD-TYPE
  T1            1            256
  T2            7            557
  T3            0            120
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  PLK2 MUTATED     4   2   2   0
  PLK2 WILD-TYPE 458 323 105  68
D70V5, multiclass
    clus
vv   PLK2 MUTATED PLK2 WILD-TYPE
  N0            4            458
  N1            2            323
  N2            2            105
  N3            0             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D70V6, binary
                cls
clus               0   1
  PLK2 MUTATED     8   0
  PLK2 WILD-TYPE 834  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  PLK2 MUTATED      8    0
  PLK2 WILD-TYPE  834   16
   clus
vv  PLK2 MUTATED PLK2 WILD-TYPE
  0            8            834
  1            0             16
[1] 2 2
[1] FALSE
D70V7, binary
                cls
clus               0   1
  PLK2 MUTATED     9   0
  PLK2 WILD-TYPE 959   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  PLK2 MUTATED      9    0
  PLK2 WILD-TYPE  959    9
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  FEMALE            9            959
  MALE              0              9
[1] 2 2
[1] FALSE
D70V8, binary
                cls
clus               0   1
  PLK2 MUTATED     4   5
  PLK2 WILD-TYPE 383 497
[1] "tbl2"
                cls
clus             [,1] [,2]
  PLK2 MUTATED      4    5
  PLK2 WILD-TYPE  383  497
     clus
vv    PLK2 MUTATED PLK2 WILD-TYPE
  NO             4            383
  YES            5            497
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  PLK2 MUTATED                            0                             5
  PLK2 WILD-TYPE                          1                           706
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  PLK2 MUTATED                                3                   0
  PLK2 WILD-TYPE                            169                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  PLK2 MUTATED                       0                                0
  PLK2 WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  PLK2 MUTATED                    0              1
  PLK2 WILD-TYPE                 14             39
D70V9, multiclass
                                  clus
vv                                 PLK2 MUTATED PLK2 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA               5            706
  INFILTRATING LOBULAR CARCINOMA              3            169
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              1             39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D70V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PLK2 MUTATED                                  0     0
  PLK2 WILD-TYPE                                1    57
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  PLK2 MUTATED                           2     6
  PLK2 WILD-TYPE                       119   699
D70V11, multiclass
                                  clus
vv                                 PLK2 MUTATED PLK2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             57
  BLACK OR AFRICAN AMERICAN                   2            119
  WHITE                                       6            699
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D70V12, binary
                cls
clus               0   1
  PLK2 MUTATED     0   7
  PLK2 WILD-TYPE  34 765
[1] "tbl2"
                cls
clus             [,1] [,2]
  PLK2 MUTATED      0    7
  PLK2 WILD-TYPE   34  765
                        clus
vv                       PLK2 MUTATED PLK2 WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO            7            765
[1] 2 2
[1] FALSE

Clustering(71) Variable = ANKRD20A4 MUTATION ANALYSIS
D71V1, survival
                     sevent
clus2                   0   1
  ANKRD20A4 MUTATED     7   0
  ANKRD20A4 WILD-TYPE 819 138
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  7                 957 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  0                 138 
$`ANKRD20A4 MUTATED`
TCGA-A7-A2KD TCGA-A2-A4RY TCGA-A8-A08A TCGA-BH-A0C0 TCGA-D8-A13Z TCGA-E2-A1IO 
       22.32        21.30         0.99        41.75        20.88        60.99 
TCGA-E9-A1R0 
       28.27 

$`ANKRD20A4 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U TCGA-A8-A07E 
       11.28        11.97        11.05        53.06        29.03        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4S0 
       35.93        50.37        50.83         7.30        24.39        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       18.05        36.95        13.02        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        43.00        40.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N 
        9.99         9.99        12.00        50.04        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       17.03        38.04        19.23        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH 
       25.05        14.99        15.48        23.24        24.79        16.80 
TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 
       14.96        17.42         0.33         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ 
        7.04         0.33         0.36         0.33         0.33         0.33 
TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.53         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27       113.62       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
      102.31        98.27        82.68        70.42        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      112.77        97.84       105.27       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       71.05        93.83       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       63.62        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 
       10.59        77.62       143.38       281.29        32.58        11.90 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE 
       74.14        46.39        89.06        90.97        81.73        77.98 
TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP 
       67.10        38.01        29.98        13.91        78.28        15.65 
TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ 
        3.22         2.56        79.00        67.86        70.88        16.27 
TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 
        4.41        15.68        14.30         9.63        44.81        81.83 
TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 
       24.49        31.00        63.32        30.35        10.78        15.16 
TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA 
       63.39        53.26        24.56        23.08        41.00        52.96 
TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN 
       26.50        23.90        20.38         5.85         2.37        16.96 
TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX 
        2.50        13.61        36.85        12.89        51.32        27.25 
TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 
       50.79         5.59        23.93        24.95        42.35        44.81 
TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K 
       23.05        32.91         4.90        35.93        20.12        90.84 
TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R 
       26.66        72.56        37.74        30.28        55.63        37.55 
TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO 
       66.05         7.36        51.39        51.16        69.93        91.99 
TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX 
      113.82        82.85        42.28        12.00        55.69        49.58 
TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC 
       17.69        25.81        31.53        97.48        25.08       114.15 
TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL 
       33.17        74.73       122.83        33.99        63.35        55.00 
TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 
       45.63        72.07        53.98        55.50        28.14        26.14 
TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q 
       38.60        83.31        57.83       130.16        36.82        36.79 
TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 
       20.12        10.52       110.60        20.88        18.64        23.51 
TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q 
       11.93        11.77        11.77        12.66        11.77        12.66 
TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z 
       12.66        12.66        12.66        12.66        48.53        12.56 
TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 
       12.16        13.51        12.59        12.59        12.92        12.46 
TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ 
       12.49        12.33        10.92        11.34        11.28         0.16 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 
       13.25        20.58        13.97        14.17        13.48        19.20 
TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       14.17        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C 
       19.43        21.04        23.87        25.05        23.34        22.82 
TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I 
       17.29        20.71        21.63        18.21        12.92        55.63 
TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       53.92         9.04        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 
        9.86        24.82        34.95         2.56         6.12         3.02 
TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD 
       11.15        48.23        45.01        32.09        40.24         1.12 
TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 
       46.65         6.58        21.27        46.59        47.64        34.45 
TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D 
       32.05        42.25        37.74        39.09        38.37        41.03 
TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 
       41.72        40.73        40.50        20.12         0.69        38.99 
TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT 
        1.94         7.13        24.56        12.33        29.72         9.47 
TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y 
       38.07        32.91        30.18        30.44        23.90        23.84 
TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX 
       26.70         0.79        25.81        26.40        12.20        39.72 
TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 
        8.48        18.21        18.90        13.25        16.57        28.77 
TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 
       25.94        29.95        29.85        40.41        41.13        39.78 
TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA 
       29.82        23.11        18.48        30.08         7.86        18.90 
TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH 
       19.99         6.15        13.94        10.52        34.55        19.96 
TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 
       55.00        52.73        25.91        22.09        34.03        17.49 
TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB 
       17.52         7.40       109.87        59.57       216.76        79.10 
TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL 
       83.34        70.85        72.10        85.15        86.96       115.69 
TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL 
      106.06       101.62       110.50        38.20        43.73        69.30 
TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB 
       66.38        72.03        13.55        18.12         2.60        62.47 
TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       11.84        11.57        32.75        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       47.01        64.21        86.96 

  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
               0.99                0.03 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
              60.99              282.90 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
              22.32               31.00 
[1] "1.0 - 61.0 (22.3)"  "0.0 - 282.9 (31.0)"
[1] "hr="     "1200000"
D71V2, continuous
                     vv
clus                  STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  ANKRD20A4 MUTATED         2        0        0        0         2         0
  ANKRD20A4 WILD-TYPE      86       71        6        4       324       227
                     vv
clus                  STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  ANKRD20A4 MUTATED           0          1          0          1        0
  ANKRD20A4 WILD-TYPE         2        136         24         56       15
                     vv
clus                  STAGE X
  ANKRD20A4 MUTATED         0
  ANKRD20A4 WILD-TYPE      12
D71V3, multiclass
            clus
vv           ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  STAGE I                    2                  86
  STAGE IA                   0                  71
  STAGE IB                   0                   6
  STAGE II                   0                   4
  STAGE IIA                  2                 324
  STAGE IIB                  0                 227
  STAGE III                  0                   2
  STAGE IIIA                 1                 136
  STAGE IIIB                 0                  24
  STAGE IIIC                 1                  56
  STAGE IV                   0                  15
  STAGE X                    0                  12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                   T1  T2  T3  T4
  ANKRD20A4 MUTATED     4   2   1   0
  ANKRD20A4 WILD-TYPE 253 562 119  35
D71V4, multiclass
    clus
vv   ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  T1                 4                 253
  T2                 2                 562
  T3                 1                 119
  T4                 0                  35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                   N0  N1  N2  N3
  ANKRD20A4 MUTATED     2   2   2   1
  ANKRD20A4 WILD-TYPE 460 323 105  67
D71V5, multiclass
    clus
vv   ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  N0                 2                 460
  N1                 2                 323
  N2                 2                 105
  N3                 1                  67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D71V6, binary
                     cls
clus                    0   1
  ANKRD20A4 MUTATED     6   0
  ANKRD20A4 WILD-TYPE 836  16
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  ANKRD20A4 MUTATED      6    0
  ANKRD20A4 WILD-TYPE  836   16
   clus
vv  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  0                 6                 836
  1                 0                  16
[1] 2 2
[1] FALSE
D71V7, binary
                     cls
clus                    0   1
  ANKRD20A4 MUTATED     7   0
  ANKRD20A4 WILD-TYPE 961   9
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  ANKRD20A4 MUTATED      7    0
  ANKRD20A4 WILD-TYPE  961    9
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  FEMALE                 7                 961
  MALE                   0                   9
[1] 2 2
[1] FALSE
D71V8, binary
                     cls
clus                    0   1
  ANKRD20A4 MUTATED     1   5
  ANKRD20A4 WILD-TYPE 386 497
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  ANKRD20A4 MUTATED      1    5
  ANKRD20A4 WILD-TYPE  386  497
     clus
vv    ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  NO                  1                 386
  YES                 5                 497
[1] 2 2
[1] FALSE
                     vv
clus                  INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  ANKRD20A4 MUTATED                            0                             6
  ANKRD20A4 WILD-TYPE                          1                           705
                     vv
clus                  INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  ANKRD20A4 MUTATED                                1                   0
  ANKRD20A4 WILD-TYPE                            171                   5
                     vv
clus                  METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  ANKRD20A4 MUTATED                       0                                0
  ANKRD20A4 WILD-TYPE                     6                               27
                     vv
clus                  MUCINOUS CARCINOMA OTHER, SPECIFY
  ANKRD20A4 MUTATED                    0              0
  ANKRD20A4 WILD-TYPE                 14             40
D71V9, multiclass
                                  clus
vv                                 ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  INFILTRATING CARCINOMA NOS                       0                   1
  INFILTRATING DUCTAL CARCINOMA                    6                 705
  INFILTRATING LOBULAR CARCINOMA                   1                 171
  MEDULLARY CARCINOMA                              0                   5
  METAPLASTIC CARCINOMA                            0                   6
  MIXED HISTOLOGY (PLEASE SPECIFY)                 0                  27
  MUCINOUS CARCINOMA                               0                  14
  OTHER, SPECIFY                                   0                  40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D71V10, continuous
                     vv
clus                  AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  ANKRD20A4 MUTATED                                  0     0
  ANKRD20A4 WILD-TYPE                                1    57
                     vv
clus                  BLACK OR AFRICAN AMERICAN WHITE
  ANKRD20A4 MUTATED                           1     5
  ANKRD20A4 WILD-TYPE                       120   700
D71V11, multiclass
                                  clus
vv                                 ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE                 0                   1
  ASIAN                                            0                  57
  BLACK OR AFRICAN AMERICAN                        1                 120
  WHITE                                            5                 700
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D71V12, binary
                     cls
clus                    0   1
  ANKRD20A4 MUTATED     0   5
  ANKRD20A4 WILD-TYPE  34 767
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  ANKRD20A4 MUTATED      0    5
  ANKRD20A4 WILD-TYPE   34  767
                        clus
vv                       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  HISPANIC OR LATINO                     0                  34
  NOT HISPANIC OR LATINO                 5                 767
[1] 2 2
[1] FALSE

Clustering(72) Variable = PHACTR1 MUTATION ANALYSIS
D72V1, survival
                   sevent
clus2                 0   1
  PHACTR1 MUTATED     5   1
  PHACTR1 WILD-TYPE 821 137
  PHACTR1 MUTATED PHACTR1 WILD-TYPE 
                6               958 
  PHACTR1 MUTATED PHACTR1 WILD-TYPE 
                1               137 
$`PHACTR1 MUTATED`
TCGA-A2-A0SV TCGA-A2-A0T5 TCGA-AN-A0G0 TCGA-C8-A26Y TCGA-D8-A1J8 TCGA-E2-A159 
       27.12        17.46         0.53        12.95        14.17        25.05 

$`PHACTR1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SW TCGA-A2-A0SX 
       24.72        63.29        99.19        54.64        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z 
        9.99        10.98         8.98        24.99         9.99        45.07 
TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C 
       18.05        36.95        13.02         0.99        38.01        28.96 
TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P 
       19.96        12.00        37.05         9.99        31.00        31.00 
TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 
        0.99       112.08        43.00        40.01        30.97        41.98 
TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M 
       12.00         9.99         9.99        12.00        50.04        33.07 
TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W 
        1.02        25.02         8.98        19.04        15.02         0.99 
TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 
       14.01        12.00        19.04        13.02        21.04         0.99 
TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G 
       27.02        17.03        38.04        19.23        22.95        73.91 
TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE 
        5.72        22.26        73.05        99.35        40.57        86.66 
TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH 
       90.71        60.92        87.12        26.04        74.14        33.04 
TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD 
       19.33        14.66        32.45         6.48        16.31        14.83 
TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ 
       22.19        25.05        14.99        15.48        23.24        24.79 
TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 
       16.80        14.96        17.42         0.33         0.33         0.23 
TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ 
        0.33         0.62         2.96         1.78         1.71         9.96 
TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT 
        7.36         7.46         0.16         0.33         0.33         0.33 
TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN 
        6.44         5.65         7.96         7.00         7.59         7.17 
TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY 
        6.90         7.04         0.33         0.36         0.33         0.33 
TCGA-AN-A0FZ TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR 
        0.33         5.36         0.33        12.33         0.30         0.33 
TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L 
        0.33         0.33         0.33         5.33         5.59        80.28 
TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T 
       61.35        66.77        81.63        95.70        68.75        69.83 
TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 
       58.95        44.42        32.78        21.40        52.18        26.04 
TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB 
       37.48        20.32        22.36        53.03        21.53        50.70 
TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL 
       50.86        72.00        76.77        65.10        62.04        55.33 
TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 
       71.80       115.27       113.62       108.72       106.78       108.03 
TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G 
      102.31        98.27        82.68        70.42        60.56        53.88 
TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H 
       40.57        20.45        97.08        82.62        11.51        24.79 
TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU 
       26.93       130.09        15.62        32.52        84.10        23.31 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      112.77        97.84       105.27       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       71.05        93.83       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       63.62        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 
       10.59        77.62       143.38       281.29        32.58        11.90 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       52.96        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07        53.98        55.50        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       26.14        38.60        83.31        57.83       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.79        20.12        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
        0.16        12.03        12.33        12.95        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.53        12.36        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD 
       19.20        17.49        16.50        55.50        15.78        18.15 
TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ 
       18.90        12.03        53.00        14.01        18.97        20.09 
TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS 
       20.12        20.09        19.40        20.38        21.01        12.20 
TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 
       13.32        14.70        18.58        17.79        16.73        25.74 
TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG 
       23.90        27.58        18.15        12.39        15.22        14.73 
TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ 
       21.83        14.50        19.92        17.69        55.30        16.41 
TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW 
       15.85        16.31        16.64        12.99        15.16        43.04 
TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 
       16.54        15.32        15.52         9.93        14.24        14.14 
TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K 
       17.42        16.04        13.45        13.05        14.43        48.03 
TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T 
       16.41        13.48        17.06         1.61        10.09        13.08 
TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 
       12.53        12.26        33.37        18.51        21.67        43.00 
TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C 
       34.42        27.52        46.59        40.41        37.51        40.11 
TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q 
       28.44        28.87        47.15        44.68        40.96        38.24 
TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W 
       38.60        33.17        75.98        43.33        34.26        32.02 
TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 
       31.96        69.34        18.51        63.62        69.96        23.24 
TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       19.43        21.04        23.87        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       20.71        21.63        18.21        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        11.05        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       28.50        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW 
       23.84        26.70         0.79        25.81        26.40        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       28.77        25.94        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        29.82        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG 
       18.90        19.99         6.15        13.94        10.52        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA 
       17.49        17.52         7.40       109.87        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
       79.10        83.34        70.85        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      115.69       106.06       101.62       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       69.30        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM 
       62.47        11.84        11.57        32.75        17.06        15.32 
TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 
       14.70        14.47        27.91        22.39         2.10        36.30 
TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX 
       58.52        31.99        58.62        34.92        36.36        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       41.92        47.01        64.21        86.96 

  PHACTR1 MUTATED PHACTR1 WILD-TYPE 
             0.53              0.03 
  PHACTR1 MUTATED PHACTR1 WILD-TYPE 
            27.12            282.90 
  PHACTR1 MUTATED PHACTR1 WILD-TYPE 
           15.815            31.000 
[1] "0.5 - 27.1 (15.8)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "6.1"
D72V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  PHACTR1 MUTATED         0        0        0        0         5         1
  PHACTR1 WILD-TYPE      88       71        6        4       321       226
                   vv
clus                STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  PHACTR1 MUTATED           0          0          0          0        1       0
  PHACTR1 WILD-TYPE         2        137         24         57       14      12
D72V3, multiclass
            clus
vv           PHACTR1 MUTATED PHACTR1 WILD-TYPE
  STAGE I                  0                88
  STAGE IA                 0                71
  STAGE IB                 0                 6
  STAGE II                 0                 4
  STAGE IIA                5               321
  STAGE IIB                1               226
  STAGE III                0                 2
  STAGE IIIA               0               137
  STAGE IIIB               0                24
  STAGE IIIC               0                57
  STAGE IV                 1                14
  STAGE X                  0                12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                 T1  T2  T3  T4
  PHACTR1 MUTATED     0   7   0   0
  PHACTR1 WILD-TYPE 257 557 120  35
D72V4, multiclass
    clus
vv   PHACTR1 MUTATED PHACTR1 WILD-TYPE
  T1               0               257
  T2               7               557
  T3               0               120
  T4               0                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                 N0  N1  N2  N3
  PHACTR1 MUTATED     5   1   1   0
  PHACTR1 WILD-TYPE 457 324 106  68
D72V5, multiclass
    clus
vv   PHACTR1 MUTATED PHACTR1 WILD-TYPE
  N0               5               457
  N1               1               324
  N2               1               106
  N3               0                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D72V6, binary
                   cls
clus                  0   1
  PHACTR1 MUTATED     6   1
  PHACTR1 WILD-TYPE 836  15
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PHACTR1 MUTATED      6    1
  PHACTR1 WILD-TYPE  836   15
   clus
vv  PHACTR1 MUTATED PHACTR1 WILD-TYPE
  0               6               836
  1               1                15
[1] 2 2
[1] FALSE
D72V7, binary
                   cls
clus                  0   1
  PHACTR1 MUTATED     7   0
  PHACTR1 WILD-TYPE 961   9
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PHACTR1 MUTATED      7    0
  PHACTR1 WILD-TYPE  961    9
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  FEMALE               7               961
  MALE                 0                 9
[1] 2 2
[1] FALSE
D72V8, binary
                   cls
clus                  0   1
  PHACTR1 MUTATED     3   3
  PHACTR1 WILD-TYPE 384 499
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PHACTR1 MUTATED      3    3
  PHACTR1 WILD-TYPE  384  499
     clus
vv    PHACTR1 MUTATED PHACTR1 WILD-TYPE
  NO                3               384
  YES               3               499
[1] 2 2
[1] FALSE
                   vv
clus                INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  PHACTR1 MUTATED                            0                             7
  PHACTR1 WILD-TYPE                          1                           704
                   vv
clus                INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  PHACTR1 MUTATED                                0                   0
  PHACTR1 WILD-TYPE                            172                   5
                   vv
clus                METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  PHACTR1 MUTATED                       0                                0
  PHACTR1 WILD-TYPE                     6                               27
                   vv
clus                MUCINOUS CARCINOMA OTHER, SPECIFY
  PHACTR1 MUTATED                    0              0
  PHACTR1 WILD-TYPE                 14             40
D72V9, multiclass
                                  clus
vv                                 PHACTR1 MUTATED PHACTR1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                     0                 1
  INFILTRATING DUCTAL CARCINOMA                  7               704
  INFILTRATING LOBULAR CARCINOMA                 0               172
  MEDULLARY CARCINOMA                            0                 5
  METAPLASTIC CARCINOMA                          0                 6
  MIXED HISTOLOGY (PLEASE SPECIFY)               0                27
  MUCINOUS CARCINOMA                             0                14
  OTHER, SPECIFY                                 0                40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D72V10, continuous
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  PHACTR1 MUTATED                                  0     1
  PHACTR1 WILD-TYPE                                1    56
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  PHACTR1 MUTATED                           0     5
  PHACTR1 WILD-TYPE                       121   700
D72V11, multiclass
                                  clus
vv                                 PHACTR1 MUTATED PHACTR1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          1                56
  BLACK OR AFRICAN AMERICAN                      0               121
  WHITE                                          5               700
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D72V12, binary
                   cls
clus                  0   1
  PHACTR1 MUTATED     0   6
  PHACTR1 WILD-TYPE  34 766
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PHACTR1 MUTATED      0    6
  PHACTR1 WILD-TYPE   34  766
                        clus
vv                       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  HISPANIC OR LATINO                   0                34
  NOT HISPANIC OR LATINO               6               766
[1] 2 2
[1] FALSE

Clustering(73) Variable = DLG1 MUTATION ANALYSIS
D73V1, survival
                sevent
clus2              0   1
  DLG1 MUTATED    11   1
  DLG1 WILD-TYPE 815 137
  DLG1 MUTATED DLG1 WILD-TYPE 
            12            952 
  DLG1 MUTATED DLG1 WILD-TYPE 
             1            137 
$`DLG1 MUTATED`
TCGA-AC-A5XS TCGA-A2-A0CX TCGA-A2-A4S1 TCGA-AN-A0FW TCGA-AO-A03M TCGA-AR-A0TX 
       19.33        56.81        26.96         0.36        61.35        64.83 
TCGA-BH-A0AZ TCGA-BH-A209 TCGA-C8-A26Y TCGA-D8-A1JJ TCGA-E2-A15P TCGA-OL-A5RW 
       63.09       130.16        12.95        20.09        19.56        36.36 

$`DLG1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       14.53        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CZ 
       77.19        75.25         5.19        98.99       107.93        53.13 
TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM 
       67.33        34.55        33.76        61.58        25.22       101.72 
TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES 
      134.40        80.28       118.45        79.76        74.40        72.00 
TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY 
       35.05        34.29        31.82        61.94        24.72        63.29 
TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY 
       99.19        54.64        27.12        44.88        50.43        44.28 
TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 
       17.52        17.13         8.38        49.84        20.52        17.46 
TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF 
       18.90        20.75        32.55        25.28        18.21        50.47 
TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL 
       21.90        21.67        49.48        18.61        19.33        48.46 
TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ 
       31.73        23.77        23.47        17.36        60.72        22.45 
TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C 
       20.25        19.20        16.47        52.47        42.44        17.19 
TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS 
       18.15       105.34        10.59        36.23        39.65        33.93 
TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY 
       91.07        29.98        32.75        56.28        47.31        35.93 
TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       50.37        50.83         7.30        24.39        21.30        23.21 
TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ 
       21.14        21.90        35.31        34.29        35.47        30.61 
TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E 
       37.45        35.67        33.11        29.79        31.73        20.19 
TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ 
       25.15        29.56        23.74        20.61        11.34        10.59 
TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC 
       10.29        13.41        14.70        14.93        13.74        14.66 
TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW 
       14.50        21.17        17.92        14.73        12.10        10.72 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       13.02        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        43.00        40.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N 
        9.99         9.99        12.00        50.04        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       17.03        38.04        19.23        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH 
       25.05        14.99        15.48        23.24        24.79        16.80 
TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 
       14.96        17.42         0.33         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK 
        0.62         2.96         1.78         1.71         9.96         7.36 
TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD 
        7.46         0.16         0.33         0.33         0.33         6.44 
TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS 
        5.65         7.96         7.00         7.59         7.17         6.90 
TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        7.04         0.33         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03N 
        0.33         0.33         5.33         5.59        80.28        66.77 
TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V 
       81.63        95.70        68.75        69.83        58.95        44.42 
TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 
       32.78        21.40        52.18        26.04        37.48        20.32 
TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD 
       22.36        53.03        21.53        50.70        50.86        72.00 
TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 
       76.77        65.10        62.04        55.33        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
      113.62       108.72       106.78       108.03       102.31        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       97.08        82.62        11.51        24.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TY TCGA-AR-A0U0 
       15.62        32.52        84.10        23.31        55.86        65.36 
TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ 
      133.22        83.87       134.14       125.16       108.36       101.00 
TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ 
      103.86        97.68        96.00        86.07        93.90        99.32 
TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX 
       37.81        41.82        94.29        61.28        86.53        86.43 
TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N 
       33.73       160.90        50.89        94.22       120.33        99.78 
TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T 
      118.59         2.76       104.28       112.77        97.84       105.27 
TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 
      102.84       105.30        50.96        98.76        98.66        89.00 
TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE 
       99.62        93.30        85.64        71.05        93.83       166.42 
TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO 
       20.25        86.53        54.21        63.62        38.17        39.39 
TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 
       40.54        33.30        38.96        10.59        77.62       143.38 
TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC 
      281.29        32.58        11.90       275.87       129.57        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.52       146.50       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28       263.28       162.05       102.77       140.28 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       282.90       169.51        97.48       188.68        79.46 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.01       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.55        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       68.12        18.84       103.63        71.15        62.93        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 
       20.45        25.55        81.44        37.74        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       70.22        84.13        51.58        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       18.21        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        81.73        77.98        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        78.28        15.65         3.22         2.56        79.00 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        70.88        16.27         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
        9.63        44.81        81.83        24.49        31.00        63.32 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        63.39        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI 
       23.08        41.00        52.96        26.50        23.90        20.38 
TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
        5.85         2.37        16.96         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
       12.89        51.32        27.25        50.79         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05        32.91         4.90 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
       35.93        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       30.28        55.63        37.55        66.05         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.16        69.93        91.99       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       12.00        55.69        49.58        17.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48        25.08       114.15        33.17        74.73       122.83 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
       33.99        63.35        55.00        45.63        72.07        53.98 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       55.50        28.14        26.14        38.60        83.31        57.83 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       36.82        36.79        20.12        10.52       110.60        20.88 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       18.64        23.51        11.93        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       48.53        12.56        12.16        13.51        12.59        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92        12.46        12.49        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
       11.28         0.16        12.03        12.33        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       20.25        12.53        12.36        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       18.97        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15R 
       55.63        53.92         9.04        20.58        11.05        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02        11.15        48.23        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       40.24         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       115.69       106.06       101.62       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RX 
       36.30        58.52        31.99        58.62        34.92        28.87 
TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J 
       24.72        22.32        20.38        26.70        23.47        65.62 
TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       41.92        47.01        64.21        86.96 

  DLG1 MUTATED DLG1 WILD-TYPE 
          0.36           0.03 
  DLG1 MUTATED DLG1 WILD-TYPE 
        130.16         282.90 
  DLG1 MUTATED DLG1 WILD-TYPE 
         31.66          30.79 
[1] "0.4 - 130.2 (31.7)" "0.0 - 282.9 (30.8)"
[1] "hr=" "1.9"
D73V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  DLG1 MUTATED         2        1        0        0         7         1
  DLG1 WILD-TYPE      86       70        6        4       319       226
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  DLG1 MUTATED           0          2          0          0        0       0
  DLG1 WILD-TYPE         2        135         24         57       15      12
D73V3, multiclass
            clus
vv           DLG1 MUTATED DLG1 WILD-TYPE
  STAGE I               2             86
  STAGE IA              1             70
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             7            319
  STAGE IIB             1            226
  STAGE III             0              2
  STAGE IIIA            2            135
  STAGE IIIB            0             24
  STAGE IIIC            0             57
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  DLG1 MUTATED     5   6   2   0
  DLG1 WILD-TYPE 252 558 118  35
D73V4, multiclass
    clus
vv   DLG1 MUTATED DLG1 WILD-TYPE
  T1            5            252
  T2            6            558
  T3            2            118
  T4            0             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  DLG1 MUTATED     9   3   1   0
  DLG1 WILD-TYPE 453 322 106  68
D73V5, multiclass
    clus
vv   DLG1 MUTATED DLG1 WILD-TYPE
  N0            9            453
  N1            3            322
  N2            1            106
  N3            0             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D73V6, binary
                cls
clus               0   1
  DLG1 MUTATED    10   0
  DLG1 WILD-TYPE 832  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  DLG1 MUTATED     10    0
  DLG1 WILD-TYPE  832   16
   clus
vv  DLG1 MUTATED DLG1 WILD-TYPE
  0           10            832
  1            0             16
[1] 2 2
[1] FALSE
D73V7, binary
                cls
clus               0   1
  DLG1 MUTATED    13   0
  DLG1 WILD-TYPE 955   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  DLG1 MUTATED     13    0
  DLG1 WILD-TYPE  955    9
        clus
vv       DLG1 MUTATED DLG1 WILD-TYPE
  FEMALE           13            955
  MALE              0              9
[1] 2 2
[1] FALSE
D73V8, binary
                cls
clus               0   1
  DLG1 MUTATED     5   6
  DLG1 WILD-TYPE 382 496
[1] "tbl2"
                cls
clus             [,1] [,2]
  DLG1 MUTATED      5    6
  DLG1 WILD-TYPE  382  496
     clus
vv    DLG1 MUTATED DLG1 WILD-TYPE
  NO             5            382
  YES            6            496
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  DLG1 MUTATED                            0                            10
  DLG1 WILD-TYPE                          1                           701
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  DLG1 MUTATED                                1                   1
  DLG1 WILD-TYPE                            171                   4
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  DLG1 MUTATED                       1                                0
  DLG1 WILD-TYPE                     5                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  DLG1 MUTATED                    0              0
  DLG1 WILD-TYPE                 14             40
D73V9, multiclass
                                  clus
vv                                 DLG1 MUTATED DLG1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA              10            701
  INFILTRATING LOBULAR CARCINOMA              1            171
  MEDULLARY CARCINOMA                         1              4
  METAPLASTIC CARCINOMA                       1              5
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              0             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D73V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  DLG1 MUTATED                                  0     1
  DLG1 WILD-TYPE                                1    56
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  DLG1 MUTATED                           2     8
  DLG1 WILD-TYPE                       119   697
D73V11, multiclass
                                  clus
vv                                 DLG1 MUTATED DLG1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       1             56
  BLACK OR AFRICAN AMERICAN                   2            119
  WHITE                                       8            697
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D73V12, binary
                cls
clus               0   1
  DLG1 MUTATED     0  10
  DLG1 WILD-TYPE  34 762
[1] "tbl2"
                cls
clus             [,1] [,2]
  DLG1 MUTATED      0   10
  DLG1 WILD-TYPE   34  762
                        clus
vv                       DLG1 MUTATED DLG1 WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO           10            762
[1] 2 2
[1] FALSE

Clustering(74) Variable = GPRASP2 MUTATION ANALYSIS
D74V1, survival
                   sevent
clus2                 0   1
  GPRASP2 MUTATED     7   2
  GPRASP2 WILD-TYPE 819 136
  GPRASP2 MUTATED GPRASP2 WILD-TYPE 
                9               955 
  GPRASP2 MUTATED GPRASP2 WILD-TYPE 
                2               136 
$`GPRASP2 MUTATED`
TCGA-A8-A09I TCGA-BH-A0B6 TCGA-EW-A1J5 TCGA-OL-A5RU TCGA-AR-A24H TCGA-B6-A0IB 
       45.07        81.63        15.68        40.08       160.90       129.57 
TCGA-BH-A18T TCGA-C8-A12P TCGA-E2-A107 
        7.36        11.77        34.42 

$`GPRASP2 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
        1.02        49.05        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 TCGA-C8-A1HL 
       24.62        54.05        32.58        21.44        89.16        10.42 
TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 TCGA-E2-A1LG 
       21.14        14.79        50.79        16.47        73.64        50.07 
TCGA-E2-A2P5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y 
       26.99        52.96        75.02        85.35        24.95        25.05 
TCGA-LL-A5YP TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG 
       14.79         8.52        14.37        43.43        48.10        14.27 
TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN 
       47.24        20.88        13.68        31.79         7.96        39.32 
TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T 
       18.21       143.15        18.02        78.41       121.94        73.84 
TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM 
       87.25       101.98        55.43       136.73        99.12        24.79 
TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU 
      114.81        92.48       107.93        77.19        75.25         5.19 
TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 
       98.99       107.93        56.81        53.13        67.33        34.55 
TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO 
       33.76        61.58        25.22       101.72       134.40        80.28 
TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU 
      118.45        79.76        74.40        72.00        35.05        34.29 
TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU 
       31.82        61.94        24.72        63.29        99.19        54.64 
TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 
       27.12        44.88        50.43        44.28        17.52        17.13 
TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 
        8.38        49.84        20.52        17.46        18.90        20.75 
TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH 
       32.55        25.28        18.21        50.47        21.90        21.67 
TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT 
       49.48        18.61        19.33        48.46        31.73        23.77 
TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 
       23.47        17.36        60.72        22.45        20.25        19.20 
TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E 
       16.47        52.47        42.44        17.19        18.15       105.34 
TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU 
       10.59        36.23        39.65        33.93        91.07        29.98 
TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 
       32.75        56.28        47.31        35.93        50.37        50.83 
TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 
        7.30        24.39        21.30        23.21        26.96        21.14 
TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 
       21.90        35.31        34.29        35.47        30.61        37.45 
TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F 
       35.67        33.11        29.79        31.73        20.19        25.15 
TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 
       29.56        23.74        20.61        11.34        10.59        10.29 
TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD 
       13.41        14.70        14.93        13.74        14.66        14.50 
TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O 
       21.17        17.92        14.73        12.10        10.72        13.02 
TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z 
       13.02         1.02        17.98        31.00        26.01         1.02 
TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F 
       17.03        53.98         9.01        43.00        33.99        18.97 
TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P 
       18.97        14.01        12.00        32.05         9.99        10.98 
TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 
        8.98        24.99         9.99        45.07        18.05        36.95 
TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I 
       13.02         0.99        38.01        28.96        19.96        12.00 
TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T 
       37.05         9.99        31.00        31.00         0.99       112.08 
TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 
       43.00        40.01        30.97        41.98        12.00         9.99 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00        50.04        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       19.04        13.02        21.04         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       38.04        19.23        22.95        73.91         5.72        22.26 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
       73.05        99.35        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       87.12        26.04        74.14        33.04        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM 
       32.45         6.48        16.31        14.83        22.19        25.05 
TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU 
       14.99        15.48        23.24        24.79        16.80        14.96 
TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
       17.42         0.33         0.33         0.23         0.33         0.62 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        2.96         1.78         1.71         9.96         7.36         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        0.16         0.33         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        7.96         7.00         7.59         7.17         6.90         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        0.33         0.36         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        69.83        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       44.42        32.78        21.40        52.18        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       72.00        76.77        65.10        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      115.27       113.62       108.72       106.78       108.03       102.31 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        82.68        70.42        60.56        53.88        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J 
       20.45        97.08        82.62        11.51        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX 
      130.09        15.62        32.52        84.10        23.31        64.83 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH 
       55.86        65.36       133.22        83.87       134.14       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO 
      108.36       101.00       103.86        97.68        96.00        86.07 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV 
       93.90        99.32        37.81        41.82        94.29        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.53        86.43        33.73        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       89.00        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        54.21        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IC 
      143.38       281.29        32.58        11.90       275.87        50.70 
TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM 
       65.52       146.50       112.37       233.62        18.77       127.33 
TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG 
       84.59       165.76       129.07       140.88       255.68        68.45 
TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ 
      212.25       234.28       263.28       162.05       102.77       140.28 
TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV 
       89.46       282.90       169.51        97.48       188.68        79.46 
TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 
       18.35        21.01       113.79       206.86       129.70       245.10 
TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI 
       28.27        68.94        58.55        43.59       101.52        73.51 
TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 
      139.17       170.17        37.87         7.07        85.35        74.99 
TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV 
       68.12        18.84       103.63        71.15        62.93        59.84 
TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 
       20.45        25.55        63.09        81.44        37.74        39.55 
TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA 
       39.16        70.22        84.13        51.58        51.68        37.22 
TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL 
       32.02        18.21        43.53        61.51        21.70        74.89 
TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS 
       61.68        72.23        75.48        74.14        76.60        85.87 
TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 
       77.75        49.94        77.95        74.14        41.75        46.39 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        81.73        77.98        67.10        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       29.98        13.91        78.28        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       79.00        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30         9.63        44.81        81.83        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       63.32        30.35        10.78        15.16        63.39        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF 
       24.56        23.08        41.00        52.96        26.50        23.90 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP 
       20.38         5.85         2.37        16.96         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       36.85        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        4.90        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18U 
       37.74        30.28        55.63        37.55        66.05        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.16        69.93        91.99       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       12.00        55.69        49.58        17.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG 
       97.48        25.08       114.15        33.17        74.73       122.83 
TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR 
       33.99        63.35        55.00        45.63        72.07        53.98 
TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 
       55.50        28.14        26.14        38.60        83.31        57.83 
TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U 
      130.16        36.82        36.79        20.12        10.52       110.60 
TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N 
       20.88        18.64        23.51        11.93        11.77        11.77 
TCGA-C8-A12O TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       12.66        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       48.53        12.56        12.16        13.51        12.59        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92        12.46        12.49        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
       11.28         0.16        12.03        12.33        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       20.25        12.53        12.36        12.95        15.45        16.87 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
       16.70         0.03         9.76        24.56        14.43        33.99 
TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
       12.95        56.81        20.88        13.25        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA 
       14.17        13.48        19.20        14.17        17.49        16.50 
TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG 
       55.50        15.78        18.15        18.90        12.03        53.00 
TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM 
       14.01        18.97        20.09        20.12        20.09        19.40 
TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 
       20.38        21.01        12.20        13.32        14.70        18.58 
TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB 
       17.79        16.73        25.74        23.90        27.58        18.15 
TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL 
       12.39        15.22        14.73        21.83        14.50        19.92 
TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT 
       17.69        55.30        16.41        15.85        16.31        16.64 
TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 
       12.99        15.16        43.04        16.54        15.32        15.52 
TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G 
        9.93        14.24        14.14        17.42        16.04        13.45 
TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N 
       13.05        14.43        48.03        16.41        13.48        17.06 
TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 
        1.61        10.09        13.08        12.53        12.26        33.37 
TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       18.51        21.67        43.00        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O 
       37.51        40.11        28.44        28.87        47.15        44.68 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       40.96        38.24        38.60        33.17        75.98        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       34.26        32.02        31.96        69.34        18.51        63.62 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 
       69.96        23.24        19.43        21.04        23.87        25.05 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G 
       23.34        22.82        17.29        20.71        21.63        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        55.63        53.92         9.04        20.58        11.05 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 
       19.56        56.94        14.07        51.39        76.57        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE 
       87.22        33.01        32.35        28.50        37.25        77.65 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.41        70.36        33.73        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
        3.88        22.19        60.99        11.08        54.18        60.36 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI 
       19.66        24.59        75.81        28.90       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
        8.75        43.04        52.73        34.55        43.56         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       30.61        34.92        38.76        34.82        32.88        36.82 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       34.16        36.20        36.56        39.55        41.62        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.24        25.84        18.94         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       34.95         2.56         6.12         3.02        11.15        48.23 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
       45.01        32.09        40.24         1.12        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
       21.27        46.59        47.64        34.45        32.05        42.25 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       37.74        39.09        38.37        41.03        41.72        40.73 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       40.50        20.12         0.69        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       24.56        12.33        29.72         9.47        38.07        32.91 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       30.18        30.44        23.90        23.84        26.70         0.79 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       25.81        26.40        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX 
       18.90        13.25        16.57        28.77        25.94        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 
       29.85        40.41        41.13        39.78        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC 
       18.48        30.08         7.86        18.90        19.99         6.15 
TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS 
       13.94        10.52        34.55        19.96        55.00        52.73 
TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 
       25.91        22.09        34.03        17.49        17.52         7.40 
TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF 
      109.87        59.57       216.76        79.10        83.34        70.85 
TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN 
       72.10        85.15        86.96       115.69       106.06       101.62 
TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 
      110.50        38.20        43.73        69.30        66.38        72.03 
TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX 
       13.55        18.12         2.60        62.47        11.84        11.57 
TCGA-LL-A441 TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 
       32.75        17.06        15.32        14.70        14.47        27.91 
TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA 
       22.39         2.10        36.30        58.52        31.99        58.62 
TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 
       34.92        36.36        28.87        24.72        22.32        20.38 
TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD 
       26.70        23.47        65.62        41.92        47.01        64.21 
TCGA-PE-A5DE 
       86.96 

  GPRASP2 MUTATED GPRASP2 WILD-TYPE 
             7.36              0.03 
  GPRASP2 MUTATED GPRASP2 WILD-TYPE 
            160.9             282.9 
  GPRASP2 MUTATED GPRASP2 WILD-TYPE 
            40.08             30.61 
[1] "7.4 - 160.9 (40.1)" "0.0 - 282.9 (30.6)"
[1] "hr=" "1.1"
D74V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  GPRASP2 MUTATED         1        0        0        0         5         2
  GPRASP2 WILD-TYPE      87       71        6        4       321       225
                   vv
clus                STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  GPRASP2 MUTATED           0          1          0          0        1       0
  GPRASP2 WILD-TYPE         2        136         24         57       14      12
D74V3, multiclass
            clus
vv           GPRASP2 MUTATED GPRASP2 WILD-TYPE
  STAGE I                  1                87
  STAGE IA                 0                71
  STAGE IB                 0                 6
  STAGE II                 0                 4
  STAGE IIA                5               321
  STAGE IIB                2               225
  STAGE III                0                 2
  STAGE IIIA               1               136
  STAGE IIIB               0                24
  STAGE IIIC               0                57
  STAGE IV                 1                14
  STAGE X                  0                12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                 T1  T2  T3  T4
  GPRASP2 MUTATED     2   5   3   0
  GPRASP2 WILD-TYPE 255 559 117  35
D74V4, multiclass
    clus
vv   GPRASP2 MUTATED GPRASP2 WILD-TYPE
  T1               2               255
  T2               5               559
  T3               3               117
  T4               0                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                 N0  N1  N2  N3
  GPRASP2 MUTATED     6   2   1   1
  GPRASP2 WILD-TYPE 456 323 106  67
D74V5, multiclass
    clus
vv   GPRASP2 MUTATED GPRASP2 WILD-TYPE
  N0               6               456
  N1               2               323
  N2               1               106
  N3               1                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D74V6, binary
                   cls
clus                  0   1
  GPRASP2 MUTATED     8   1
  GPRASP2 WILD-TYPE 834  15
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GPRASP2 MUTATED      8    1
  GPRASP2 WILD-TYPE  834   15
   clus
vv  GPRASP2 MUTATED GPRASP2 WILD-TYPE
  0               8               834
  1               1                15
[1] 2 2
[1] FALSE
D74V7, binary
                   cls
clus                  0   1
  GPRASP2 MUTATED    10   0
  GPRASP2 WILD-TYPE 958   9
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GPRASP2 MUTATED     10    0
  GPRASP2 WILD-TYPE  958    9
        clus
vv       GPRASP2 MUTATED GPRASP2 WILD-TYPE
  FEMALE              10               958
  MALE                 0                 9
[1] 2 2
[1] FALSE
D74V8, binary
                   cls
clus                  0   1
  GPRASP2 MUTATED     4   4
  GPRASP2 WILD-TYPE 383 498
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GPRASP2 MUTATED      4    4
  GPRASP2 WILD-TYPE  383  498
     clus
vv    GPRASP2 MUTATED GPRASP2 WILD-TYPE
  NO                4               383
  YES               4               498
[1] 2 2
[1] FALSE
                   vv
clus                INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  GPRASP2 MUTATED                            0                             7
  GPRASP2 WILD-TYPE                          1                           704
                   vv
clus                INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  GPRASP2 MUTATED                                3                   0
  GPRASP2 WILD-TYPE                            169                   5
                   vv
clus                METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  GPRASP2 MUTATED                       0                                0
  GPRASP2 WILD-TYPE                     6                               27
                   vv
clus                MUCINOUS CARCINOMA OTHER, SPECIFY
  GPRASP2 MUTATED                    0              0
  GPRASP2 WILD-TYPE                 14             40
D74V9, multiclass
                                  clus
vv                                 GPRASP2 MUTATED GPRASP2 WILD-TYPE
  INFILTRATING CARCINOMA NOS                     0                 1
  INFILTRATING DUCTAL CARCINOMA                  7               704
  INFILTRATING LOBULAR CARCINOMA                 3               169
  MEDULLARY CARCINOMA                            0                 5
  METAPLASTIC CARCINOMA                          0                 6
  MIXED HISTOLOGY (PLEASE SPECIFY)               0                27
  MUCINOUS CARCINOMA                             0                14
  OTHER, SPECIFY                                 0                40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D74V10, continuous
                   vv
clus                AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  GPRASP2 MUTATED                                  0     1
  GPRASP2 WILD-TYPE                                1    56
                   vv
clus                BLACK OR AFRICAN AMERICAN WHITE
  GPRASP2 MUTATED                           1     6
  GPRASP2 WILD-TYPE                       120   699
D74V11, multiclass
                                  clus
vv                                 GPRASP2 MUTATED GPRASP2 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE               0                 1
  ASIAN                                          1                56
  BLACK OR AFRICAN AMERICAN                      1               120
  WHITE                                          6               699
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D74V12, binary
                   cls
clus                  0   1
  GPRASP2 MUTATED     0   7
  GPRASP2 WILD-TYPE  34 765
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GPRASP2 MUTATED      0    7
  GPRASP2 WILD-TYPE   34  765
                        clus
vv                       GPRASP2 MUTATED GPRASP2 WILD-TYPE
  HISPANIC OR LATINO                   0                34
  NOT HISPANIC OR LATINO               7               765
[1] 2 2
[1] FALSE

Clustering(75) Variable = CCDC82 MUTATION ANALYSIS
D75V1, survival
                  sevent
clus2                0   1
  CCDC82 MUTATED     4   1
  CCDC82 WILD-TYPE 822 137
  CCDC82 MUTATED CCDC82 WILD-TYPE 
               5              959 
  CCDC82 MUTATED CCDC82 WILD-TYPE 
               1              137 
$`CCDC82 MUTATED`
TCGA-AN-A0AK TCGA-BH-A18P TCGA-C8-A12U TCGA-C8-A1HJ TCGA-E9-A22A 
        7.36        30.28        12.66         0.16        39.09 

$`CCDC82 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U 
       12.00        32.05         9.99        10.98         8.98        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        18.05        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       38.01        28.96        19.96        12.00        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       31.00        31.00         0.99       112.08        43.00        40.01 
TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       30.97        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       50.04        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       21.04         0.99        27.02        17.03        38.04        19.23 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72        22.26        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 
       16.31        14.83        22.19        25.05        14.99        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X 
       23.24        24.79        16.80        14.96        17.42         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.23         0.33         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        1.71         9.96         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.53         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        5.59        80.28        61.35        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       68.75        69.83        58.95        44.42        32.78        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       52.18        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        65.10 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       62.04        55.33        71.80       115.27       113.62       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03       102.31        98.27        82.68        70.42 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       60.56        53.88        40.57        20.45        97.08        82.62 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       11.51        24.79        26.93       130.09        15.62        32.52 
TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 
       84.10        23.31        64.83        55.86        65.36       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       134.14       125.16       108.36       101.00       103.86 
TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS 
       97.68        96.00        86.07        93.90        99.32        37.81 
TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       41.82        94.29        61.28        86.53        86.43        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
      160.90        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28       112.77        97.84       105.27       102.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
      105.30        50.96        98.76        98.66        89.00        99.62 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       93.30        85.64        71.05        93.83       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       86.53        54.21        63.62        38.17        39.39        40.54 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       33.30        38.96        10.59        77.62       143.38       281.29 
TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
       32.58        11.90       275.87       129.57        50.70        65.52 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      146.50       112.37       233.62        18.77       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH 
      165.76       129.07       140.88       255.68        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
      234.28       263.28       162.05       102.77       140.28        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      282.90       169.51        97.48       188.68        79.46        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       21.01       113.79       206.86       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       68.94        58.55        43.59       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
      170.17        37.87         7.07        85.35        74.99        68.12 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       18.84       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 
       25.55        63.09        81.44        37.74        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       70.22        84.13        51.58        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       18.21        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        81.73        77.98        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        78.28        15.65         3.22         2.56        79.00 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 
       67.86        70.88        16.27         4.41        15.68        14.30 
TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI 
        9.63        44.81        81.83        24.49        31.00        63.32 
TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 
       30.35        10.78        15.16        63.39        53.26        24.56 
TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI 
       23.08        41.00        52.96        26.50        23.90        20.38 
TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ 
        5.85         2.37        16.96         2.50        13.61        36.85 
TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 
       12.89        51.32        27.25        50.79         5.59        23.93 
TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G 
       24.95        42.35        44.81        23.05        32.91         4.90 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
       35.93        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       55.63        37.55        66.05         7.36        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       69.93        91.99       113.82        82.85        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 
       55.69        49.58        17.69        25.81        31.53        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       25.08       114.15        33.17        74.73       122.83        33.99 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       63.35        55.00        45.63        72.07        53.98        55.50 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       28.14        26.14        38.60        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       36.82        36.79        20.12        10.52       110.60        20.88 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       18.64        23.51        11.93        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       11.77        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W 
       12.03        12.33        12.95        12.33        20.25        12.53 
TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 
       12.36        12.95        15.45        16.87        16.70         0.03 
TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y 
        9.76        24.56        14.43        33.99        12.95        56.81 
TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 
       20.88        13.25        20.58        13.97        14.17        13.48 
TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC 
       19.20        14.17        17.49        16.50        55.50        15.78 
TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI 
       18.15        18.90        12.03        53.00        14.01        18.97 
TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP 
       20.09        20.12        20.09        19.40        20.38        21.01 
TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 
       12.20        13.32        14.70        18.58        17.79        16.73 
TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF 
       25.74        23.90        27.58        18.15        12.39        15.22 
TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO 
       14.73        21.83        14.50        19.92        17.69        55.30 
TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV 
       16.41        15.85        16.31        16.64        12.99        15.16 
TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       43.04        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       70.36        33.73        33.70        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 
       22.19        60.99        11.08        54.18        60.36        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       24.59        75.81        28.90       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        52.73        34.55        43.56         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        38.76        34.82        32.88        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       36.20        36.56        39.55        41.62        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       25.84        18.94         9.86        24.82        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02        11.15        48.23        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       32.09        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       115.69       106.06       101.62       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        58.52        31.99        58.62        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       65.62        41.92        47.01        64.21        86.96 

  CCDC82 MUTATED CCDC82 WILD-TYPE 
            0.16             0.03 
  CCDC82 MUTATED CCDC82 WILD-TYPE 
           39.09           282.90 
  CCDC82 MUTATED CCDC82 WILD-TYPE 
           12.66            31.00 
[1] "0.2 - 39.1 (12.7)"  "0.0 - 282.9 (31.0)"
[1] "hr=" "4.7"
D75V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  CCDC82 MUTATED         1        0        0        0         3         2
  CCDC82 WILD-TYPE      87       71        6        4       323       225
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  CCDC82 MUTATED           0          0          0          0        0       0
  CCDC82 WILD-TYPE         2        137         24         57       15      12
D75V3, multiclass
            clus
vv           CCDC82 MUTATED CCDC82 WILD-TYPE
  STAGE I                 1               87
  STAGE IA                0               71
  STAGE IB                0                6
  STAGE II                0                4
  STAGE IIA               3              323
  STAGE IIB               2              225
  STAGE III               0                2
  STAGE IIIA              0              137
  STAGE IIIB              0               24
  STAGE IIIC              0               57
  STAGE IV                0               15
  STAGE X                 0               12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  CCDC82 MUTATED     1   4   1   0
  CCDC82 WILD-TYPE 256 560 119  35
D75V4, multiclass
    clus
vv   CCDC82 MUTATED CCDC82 WILD-TYPE
  T1              1              256
  T2              4              560
  T3              1              119
  T4              0               35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  CCDC82 MUTATED     5   1   0   0
  CCDC82 WILD-TYPE 457 324 107  68
D75V5, multiclass
    clus
vv   CCDC82 MUTATED CCDC82 WILD-TYPE
  N0              5              457
  N1              1              324
  N2              0              107
  N3              0               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D75V6, binary
                  cls
clus                 0   1
  CCDC82 MUTATED     6   0
  CCDC82 WILD-TYPE 836  16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC82 MUTATED      6    0
  CCDC82 WILD-TYPE  836   16
   clus
vv  CCDC82 MUTATED CCDC82 WILD-TYPE
  0              6              836
  1              0               16
[1] 2 2
[1] FALSE
D75V7, binary
                  cls
clus                 0   1
  CCDC82 MUTATED     6   0
  CCDC82 WILD-TYPE 962   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC82 MUTATED      6    0
  CCDC82 WILD-TYPE  962    9
        clus
vv       CCDC82 MUTATED CCDC82 WILD-TYPE
  FEMALE              6              962
  MALE                0                9
[1] 2 2
[1] FALSE
D75V8, binary
                  cls
clus                 0   1
  CCDC82 MUTATED     3   0
  CCDC82 WILD-TYPE 384 502
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC82 MUTATED      3    0
  CCDC82 WILD-TYPE  384  502
     clus
vv    CCDC82 MUTATED CCDC82 WILD-TYPE
  NO               3              384
  YES              0              502
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  CCDC82 MUTATED                            0                             5
  CCDC82 WILD-TYPE                          1                           706
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  CCDC82 MUTATED                                1                   0
  CCDC82 WILD-TYPE                            171                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  CCDC82 MUTATED                       0                                0
  CCDC82 WILD-TYPE                     6                               27
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  CCDC82 MUTATED                    0              0
  CCDC82 WILD-TYPE                 14             40
D75V9, multiclass
                                  clus
vv                                 CCDC82 MUTATED CCDC82 WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA                 5              706
  INFILTRATING LOBULAR CARCINOMA                1              171
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)              0               27
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                                0               40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D75V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CCDC82 MUTATED                                  0     2
  CCDC82 WILD-TYPE                                1    55
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  CCDC82 MUTATED                           0     3
  CCDC82 WILD-TYPE                       121   702
D75V11, multiclass
                                  clus
vv                                 CCDC82 MUTATED CCDC82 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         2               55
  BLACK OR AFRICAN AMERICAN                     0              121
  WHITE                                         3              702
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D75V12, binary
                  cls
clus                 0   1
  CCDC82 MUTATED     0   4
  CCDC82 WILD-TYPE  34 768
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC82 MUTATED      0    4
  CCDC82 WILD-TYPE   34  768
                        clus
vv                       CCDC82 MUTATED CCDC82 WILD-TYPE
  HISPANIC OR LATINO                  0               34
  NOT HISPANIC OR LATINO              4              768
[1] 2 2
[1] FALSE

Clustering(76) Variable = CCDC27 MUTATION ANALYSIS
D76V1, survival
                  sevent
clus2                0   1
  CCDC27 MUTATED     6   1
  CCDC27 WILD-TYPE 820 137
  CCDC27 MUTATED CCDC27 WILD-TYPE 
               7              957 
  CCDC27 MUTATED CCDC27 WILD-TYPE 
               1              137 
$`CCDC27 MUTATED`
TCGA-A8-A06U TCGA-A2-A3Y0 TCGA-A7-A5ZV TCGA-A8-A097 TCGA-AO-A0JL TCGA-BH-A0C0 
       29.03        50.83        12.10        12.00        55.33        41.75 
TCGA-LL-A441 
       32.75 

$`CCDC27 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A07E 
       22.32        11.28        11.97        11.05        53.06        19.99 
TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 TCGA-A8-A09C 
       15.06        33.01        33.01        33.01        17.95         1.02 
TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 TCGA-AC-A5EI 
       49.05        45.07        29.98        16.57        19.79        14.53 
TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 TCGA-AQ-A54N 
       19.33        13.71        50.24        17.79         5.65         2.56 
TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR TCGA-AR-A5QM 
       32.91        98.33        17.23        66.15        57.27        73.35 
TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H TCGA-BH-A1F5 
       24.62        81.63        54.05        32.58        21.44        89.16 
TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       10.42        21.14        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       35.93        50.37         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZW 
       14.66        14.50        21.17        17.92        14.73        10.72 
TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y 
       13.02        13.02         1.02        17.98        31.00        26.01 
TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C 
        1.02        17.03        53.98         9.01        43.00        33.99 
TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O 
       18.97        18.97        14.01        12.00        32.05         9.99 
TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
       10.98         8.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A099 
      112.08        43.00        40.01        30.97        41.98         9.99 
TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q 
        9.99        12.00        50.04        33.07         1.02        25.02 
TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 
        8.98        19.04        15.02         0.99        14.01        12.00 
TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB 
       19.04        13.02        21.04         0.99        27.02        17.03 
TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 
       38.04        19.23        22.95        73.91         5.72        22.26 
TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG 
       73.05        99.35        40.57        86.66        90.71        60.92 
TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ 
       87.12        26.04        74.14        33.04        19.33        14.66 
TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM 
       32.45         6.48        16.31        14.83        22.19        25.05 
TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU 
       14.99        15.48        23.24        24.79        16.80        14.96 
TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 
       17.42         0.33         0.33         0.23         0.33         0.62 
TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL 
        2.96         1.78         1.71         9.96         7.36         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        0.16         0.33         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        7.96         7.00         7.59         7.17         6.90         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        0.33         0.36         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        69.83        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       44.42        32.78        21.40        52.18        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JM TCGA-AO-A124 
       72.00        76.77        65.10        62.04        71.80       115.27 
TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B 
      113.62       108.72       106.78       108.03       102.31        98.27 
TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO 
       82.68        70.42        60.56        53.88        40.57        20.45 
TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L 
       97.08        82.62        11.51        24.79        26.93       130.09 
TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY 
       15.62        32.52        84.10        23.31        64.83        55.86 
TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI 
       65.36       133.22        83.87       134.14       125.16       108.36 
TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP 
      101.00       103.86        97.68        96.00        86.07        93.90 
TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW 
       99.32        37.81        41.82        94.29        61.28        86.53 
TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M 
       86.43        33.73       160.90        50.89        94.22       120.33 
TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S 
       99.78       118.59         2.76       104.28       112.77        97.84 
TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z 
      105.27       102.84       105.30        50.96        98.76        98.66 
TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 
       89.00        99.62        93.30        85.64        71.05        93.83 
TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN 
      166.42        20.25        86.53        54.21        63.62        38.17 
TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 
       39.39        40.54        33.30        38.96        10.59        77.62 
TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB 
      143.38       281.29        32.58        11.90       275.87       129.57 
TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK 
       50.70        65.52       146.50       112.37       233.62        18.77 
TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE 
      127.33        84.59       165.76       129.07       140.88       255.68 
TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP 
       68.45       212.25       234.28       263.28       162.05       102.77 
TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT 
      140.28        89.46       282.90       169.51        97.48       188.68 
TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 
       79.46        18.35        21.01       113.79       206.86       129.70 
TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF 
      245.10        28.27        68.94        58.55        43.59       101.52 
TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 
       73.51       139.17       170.17        37.87         7.07        85.35 
TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU 
       74.99        68.12        18.84       103.63        71.15        62.93 
TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 
       59.84        20.45        25.55        63.09        81.44        37.74 
TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 
       39.55        39.16        70.22        84.13        51.58        51.68 
TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ 
       37.22        32.02        18.21        43.53        61.51        21.70 
TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR 
       74.89        61.68        72.23        75.48        74.14        76.60 
TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C1 
       85.87        77.75        49.94        77.95        74.14        46.39 
TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH 
       89.06        90.97        81.73        77.98        67.10        38.01 
TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS 
       29.98        13.91        78.28        15.65         3.22         2.56 
TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 
       79.00        67.86        70.88        16.27         4.41        15.68 
TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE 
       14.30         9.63        44.81        81.83        24.49        31.00 
TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 
       63.32        30.35        10.78        15.16        63.39        53.26 
TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF 
       24.56        23.08        41.00        52.96        26.50        23.90 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP 
       20.38         5.85         2.37        16.96         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       36.85        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M 
        4.90        35.93        20.12        90.84        26.66        72.56 
TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T 
       37.74        30.28        55.63        37.55        66.05         7.36 
TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET 
       51.39        51.16        69.93        91.99       113.82        82.85 
TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 
       42.28        12.00        55.69        49.58        17.69        25.81 
TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE 
       31.53        97.48        25.08       114.15        33.17        74.73 
TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN 
      122.83        33.99        63.35        55.00        45.63        72.07 
TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 
       53.98        55.50        28.14        26.14        38.60        83.31 
TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T 
       57.83       130.16        36.82        36.79        20.12        10.52 
TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M 
      110.60        20.88        18.64        23.51        11.93        11.77 
TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V 
       11.77        12.66        11.77        12.66        12.66        12.66 
TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 
       12.66        12.66        48.53        12.56        12.16        13.51 
TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE 
       12.59        12.59        12.92        12.46        12.49        12.33 
TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM 
       10.92        11.34        11.28         0.16        12.03        12.33 
TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y 
       12.95        12.33        20.25        12.53        12.36        12.95 
TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A 
       15.45        16.87        16.70         0.03         9.76        24.56 
TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 
       14.43        33.99        12.95        56.81        20.88        13.25 
TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 
       20.58        13.97        14.17        13.48        19.20        14.17 
TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE 
       17.49        16.50        55.50        15.78        18.15        18.90 
TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK 
       12.03        53.00        14.01        18.97        20.09        20.12 
TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT 
       20.09        19.40        20.38        21.01        12.20        13.32 
TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 
       14.70        18.58        17.79        16.73        25.74        23.90 
TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ 
       27.58        18.15        12.39        15.22        14.73        21.83 
TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR 
       14.50        19.92        17.69        55.30        16.41        15.85 
TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY 
       16.31        16.64        12.99        15.16        43.04        16.54 
TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E 
       15.32        15.52         9.93        14.24        14.14        17.42 
TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L 
       16.04        13.45        13.05        14.43        48.03        16.41 
TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V 
       13.48        17.06         1.61        10.09        13.08        12.53 
TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 
       12.26        33.37        18.51        21.67        43.00        34.42 
TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E 
       27.52        46.59        40.41        37.51        40.11        28.44 
TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R 
       28.87        47.15        44.68        40.96        38.24        38.60 
TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X 
       33.17        75.98        43.33        34.26        32.02        31.96 
TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 
       69.34        18.51        63.62        69.96        23.24        19.43 
TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D 
       21.04        23.87        25.05        23.34        22.82        17.29 
TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J 
       20.71        21.63        18.21        12.92        55.63        53.92 
TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S 
        9.04        20.58        11.05        19.56        56.94        14.07 
TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 
       51.39        76.57        53.62        87.22        33.01        32.35 
TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH 
       28.50        37.25        77.65        37.41        70.36        33.73 
TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO 
       33.70        28.44        59.18         3.88        22.19        60.99 
TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB 
       11.08        54.18        60.36        19.66        24.59        75.81 
TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS 
       28.90       106.75       102.61         8.75        43.04        52.73 
TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 
       34.55        43.56         8.28        30.61        34.92        38.76 
TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA 
       34.82        32.88        36.82        34.16        36.20        36.56 
TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH 
       39.55        41.62        35.77        35.24        25.84        18.94 
TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 
        9.86        24.82        28.27        34.95         2.56         6.12 
TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC 
        3.02        11.15        48.23        45.01        32.09        40.24 
TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI 
        1.12        46.65         6.58        21.27        46.59        47.64 
TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B 
       34.45        32.05        42.25        37.74        39.09        38.37 
TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 
       41.03        41.72        40.73        40.50        20.12         0.69 
TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS 
       38.99         1.94         7.13        24.56        12.33        29.72 
TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X 
        9.47        38.07        32.91        30.18        30.44        23.90 
TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW 
       23.84        26.70         0.79        25.81        26.40        12.20 
TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 
       39.72         8.48        18.21        18.90        13.25        16.57 
TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 
       28.77        25.94        29.95        29.85        40.41        41.13 
TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1P8 
       39.78        29.82        23.11        18.48        30.08         7.86 
TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE TCGA-EW-A1PG 
       18.90        19.99         6.15        13.94        10.52        34.55 
TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW TCGA-EW-A3E8 
       19.96        55.00        52.73        25.91        22.09        34.03 
TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 TCGA-GM-A2DA 
       17.49        17.52         7.40       109.87        59.57       216.76 
TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI TCGA-GM-A2DK 
       79.10        83.34        70.85        72.10        85.15        86.96 
TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY TCGA-GM-A3XG 
      115.69       106.06       101.62       110.50        38.20        43.73 
TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX TCGA-HN-A2NL 
       69.30        66.38        72.03        13.55        18.12         2.60 
TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN 
       62.47        11.84        11.57        17.06        15.32        14.70 
TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 
       14.47        27.91        22.39         2.10        36.30        58.52 
TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY 
       31.99        58.62        34.92        36.36        28.87        24.72 
TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K 
       22.32        20.38        26.70        23.47        65.62        41.92 
TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       47.01        64.21        86.96 

  CCDC27 MUTATED CCDC27 WILD-TYPE 
           12.00             0.03 
  CCDC27 MUTATED CCDC27 WILD-TYPE 
           55.33           282.90 
  CCDC27 MUTATED CCDC27 WILD-TYPE 
           32.75            30.61 
[1] "12.0 - 55.3 (32.8)" "0.0 - 282.9 (30.6)"
[1] "hr=" "1.6"
D76V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  CCDC27 MUTATED         0        1        0        0         2         3
  CCDC27 WILD-TYPE      88       70        6        4       324       224
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  CCDC27 MUTATED           0          1          0          0        0       0
  CCDC27 WILD-TYPE         2        136         24         57       15      12
D76V3, multiclass
            clus
vv           CCDC27 MUTATED CCDC27 WILD-TYPE
  STAGE I                 0               88
  STAGE IA                1               70
  STAGE IB                0                6
  STAGE II                0                4
  STAGE IIA               2              324
  STAGE IIB               3              224
  STAGE III               0                2
  STAGE IIIA              1              136
  STAGE IIIB              0               24
  STAGE IIIC              0               57
  STAGE IV                0               15
  STAGE X                 0               12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  CCDC27 MUTATED     2   5   0   0
  CCDC27 WILD-TYPE 255 559 120  35
D76V4, multiclass
    clus
vv   CCDC27 MUTATED CCDC27 WILD-TYPE
  T1              2              255
  T2              5              559
  T3              0              120
  T4              0               35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  CCDC27 MUTATED     2   4   1   0
  CCDC27 WILD-TYPE 460 321 106  68
D76V5, multiclass
    clus
vv   CCDC27 MUTATED CCDC27 WILD-TYPE
  N0              2              460
  N1              4              321
  N2              1              106
  N3              0               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D76V6, binary
                  cls
clus                 0   1
  CCDC27 MUTATED     6   0
  CCDC27 WILD-TYPE 836  16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC27 MUTATED      6    0
  CCDC27 WILD-TYPE  836   16
   clus
vv  CCDC27 MUTATED CCDC27 WILD-TYPE
  0              6              836
  1              0               16
[1] 2 2
[1] FALSE
D76V7, binary
                  cls
clus                 0   1
  CCDC27 MUTATED     7   0
  CCDC27 WILD-TYPE 961   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC27 MUTATED      7    0
  CCDC27 WILD-TYPE  961    9
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  FEMALE              7              961
  MALE                0                9
[1] 2 2
[1] FALSE
D76V8, binary
                  cls
clus                 0   1
  CCDC27 MUTATED     2   5
  CCDC27 WILD-TYPE 385 497
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC27 MUTATED      2    5
  CCDC27 WILD-TYPE  385  497
     clus
vv    CCDC27 MUTATED CCDC27 WILD-TYPE
  NO               2              385
  YES              5              497
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  CCDC27 MUTATED                            1                             6
  CCDC27 WILD-TYPE                          0                           705
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  CCDC27 MUTATED                                0                   0
  CCDC27 WILD-TYPE                            172                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  CCDC27 MUTATED                       0                                0
  CCDC27 WILD-TYPE                     6                               27
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  CCDC27 MUTATED                    0              0
  CCDC27 WILD-TYPE                 14             40
D76V9, multiclass
                                  clus
vv                                 CCDC27 MUTATED CCDC27 WILD-TYPE
  INFILTRATING CARCINOMA NOS                    1                0
  INFILTRATING DUCTAL CARCINOMA                 6              705
  INFILTRATING LOBULAR CARCINOMA                0              172
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)              0               27
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                                0               40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D76V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  CCDC27 MUTATED                                  0     0
  CCDC27 WILD-TYPE                                1    57
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  CCDC27 MUTATED                           3     2
  CCDC27 WILD-TYPE                       118   703
D76V11, multiclass
                                  clus
vv                                 CCDC27 MUTATED CCDC27 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               57
  BLACK OR AFRICAN AMERICAN                     3              118
  WHITE                                         2              703
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D76V12, binary
                  cls
clus                 0   1
  CCDC27 MUTATED     0   4
  CCDC27 WILD-TYPE  34 768
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC27 MUTATED      0    4
  CCDC27 WILD-TYPE   34  768
                        clus
vv                       CCDC27 MUTATED CCDC27 WILD-TYPE
  HISPANIC OR LATINO                  0               34
  NOT HISPANIC OR LATINO              4              768
[1] 2 2
[1] FALSE

Clustering(77) Variable = RHOA MUTATION ANALYSIS
D77V1, survival
                sevent
clus2              0   1
  RHOA MUTATED     4   0
  RHOA WILD-TYPE 822 138
  RHOA MUTATED RHOA WILD-TYPE 
             4            960 
  RHOA MUTATED RHOA WILD-TYPE 
             0            138 
$`RHOA MUTATED`
TCGA-AC-A3TM TCGA-BH-A0E0 TCGA-D8-A1JA TCGA-D8-A27G 
       25.05         4.41        16.50        13.45 

$`RHOA WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U 
       12.00        32.05         9.99        10.98         8.98        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        18.05        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       38.01        28.96        19.96        12.00        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       31.00        31.00         0.99       112.08        43.00        40.01 
TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       30.97        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       50.04        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       21.04         0.99        27.02        17.03        38.04        19.23 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72        22.26        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI 
       16.31        14.83        22.19        14.99        15.48        23.24 
TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y 
       24.79        16.80        14.96        17.42         0.33         0.33 
TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D 
        0.23         0.33         0.62         2.96         1.78         1.71 
TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS 
        9.96         7.36         7.46         0.16         0.33         0.33 
TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL 
        0.33         6.44         5.65         7.96         7.00         7.59 
TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX 
        7.17         6.90         7.04         0.33         0.36         0.33 
TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO 
        0.33         0.33         0.53         5.36         0.33        12.33 
TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV 
        0.30         0.33         0.33         0.33         0.33         5.33 
TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P 
        5.59        80.28        61.35        66.77        81.63        95.70 
TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 
       68.75        69.83        58.95        44.42        32.78        21.40 
TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 
       52.18        26.04        37.48        20.32        22.36        53.03 
TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF 
       21.53        50.70        50.86        72.00        76.77        65.10 
TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 
       62.04        55.33        71.80       115.27       113.62       108.72 
TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E 
      106.78       108.03       102.31        98.27        82.68        70.42 
TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR 
       60.56        53.88        40.57        20.45        97.08        82.62 
TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 
       11.51        24.79        26.93       130.09        15.62        32.52 
TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 
       84.10        23.31        64.83        55.86        65.36       133.22 
TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK 
       83.87       134.14       125.16       108.36       101.00       103.86 
TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS 
       97.68        96.00        86.07        93.90        99.32        37.81 
TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY 
       41.82        94.29        61.28        86.53        86.43        33.73 
TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O 
      160.90        50.89        94.22       120.33        99.78       118.59 
TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U 
        2.76       104.28       112.77        97.84       105.27       102.84 
TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 
      105.30        50.96        98.76        98.66        89.00        99.62 
TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH 
       93.30        85.64        71.05        93.83       166.42        20.25 
TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ 
       86.53        54.21        63.62        38.17        39.39        40.54 
TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 
       33.30        38.96        10.59        77.62       143.38       281.29 
TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE 
       32.58        11.90       275.87       129.57        50.70        65.52 
TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN 
      146.50       112.37       233.62        18.77       127.33        84.59 
TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH 
      165.76       129.07       140.88       255.68        68.45       212.25 
TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT 
      234.28       263.28       162.05       102.77       140.28        89.46 
TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW 
      282.90       169.51        97.48       188.68        79.46        18.35 
TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 
       21.01       113.79       206.86       129.70       245.10        28.27 
TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN 
       68.94        58.55        43.59       101.52        73.51       139.17 
TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 
      170.17        37.87         7.07        85.35        74.99        68.12 
TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW 
       18.84       103.63        71.15        62.93        59.84        20.45 
TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 
       25.55        63.09        81.44        37.74        39.55        39.16 
TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC 
       70.22        84.13        51.58        51.68        37.22        32.02 
TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM 
       18.21        43.53        61.51        21.70        74.89        61.68 
TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT 
       72.23        75.48        74.14        76.60        85.87        77.75 
TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 
       49.94        77.95        74.14        41.75        46.39        89.06 
TCGA-BH-A0C7 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI 
       90.97        81.73        77.98        67.10        38.01        29.98 
TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT 
       13.91        78.28        15.65         3.22         2.56        79.00 
TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 
       67.86        70.88        16.27        15.68        14.30         9.63 
TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY 
       44.81        81.83        24.49        31.00        63.32        30.35 
TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 
       10.78        15.16        63.39        53.26        24.56        23.08 
TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK 
       41.00        52.96        26.50        23.90        20.38         5.85 
TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU 
        2.37        16.96         2.50        13.61        36.85        12.89 
TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 
       51.32        27.25        50.79         5.59        23.93        24.95 
TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I 
       42.35        44.81        23.05        32.91         4.90        35.93 
TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P 
       20.12        90.84        26.66        72.56        37.74        30.28 
TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V 
       55.63        37.55        66.05         7.36        51.39        51.16 
TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV 
       69.93        91.99       113.82        82.85        42.28        12.00 
TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 
       55.69        49.58        17.69        25.81        31.53        97.48 
TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH 
       25.08       114.15        33.17        74.73       122.83        33.99 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       63.35        55.00        45.63        72.07        53.98        55.50 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       28.14        26.14        38.60        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V 
       36.82        36.79        20.12        10.52       110.60        20.88 
TCGA-BH-A5IZ TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O 
       18.64        23.51        11.93        11.77        11.77        12.66 
TCGA-C8-A12P TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X 
       11.77        12.66        12.66        12.66        12.66        12.66 
TCGA-C8-A12Y TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 
       48.53        12.56        12.16        13.51        12.59        12.59 
TCGA-C8-A135 TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG 
       12.92        12.46        12.49        12.33        10.92        11.34 
TCGA-C8-A1HI TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO 
       11.28         0.16        12.03        12.33        12.95        12.33 
TCGA-C8-A26V TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 
       20.25        12.53        12.36        12.95        15.45        16.87 
TCGA-C8-A274 TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 
       16.70         0.03         9.76        24.56        14.43        33.99 
TCGA-C8-A3M8 TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 
       12.95        56.81        20.88        13.25        20.58        13.97 
TCGA-D8-A143 TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JB 
       14.17        13.48        19.20        14.17        17.49        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM 
       15.22        14.73        21.83        14.50        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU 
       55.30        16.41        15.85        16.31        16.64        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       15.16        43.04        16.54        15.32        15.52         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27H TCGA-D8-A27I 
       14.24        14.14        17.42        16.04        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P 
       55.63        53.92         9.04        20.58        11.05        19.56 
TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 
       56.94        14.07        51.39        76.57        53.62        87.22 
TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF 
       33.01        32.35        28.50        37.25        77.65        37.41 
TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL 
       70.36        33.73        33.70        28.44        59.18         3.88 
TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 
       22.19        60.99        11.08        54.18        60.36        19.66 
TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK 
       24.59        75.81        28.90       106.75       102.61         8.75 
TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 
       43.04        52.73        34.55        43.56         8.28        30.61 
TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 
       34.92        38.76        34.82        32.88        36.82        34.16 
TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF 
       36.20        36.56        39.55        41.62        35.77        35.24 
TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 
       25.84        18.94         9.86        24.82        28.27        34.95 
TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA 
        2.56         6.12         3.02        11.15        48.23        45.01 
TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG 
       32.09        40.24         1.12        46.65         6.58        21.27 
TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 
       46.59        47.64        34.45        32.05        42.25        37.74 
TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H 
       39.09        38.37        41.03        41.72        40.73        40.50 
TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A 
       20.12         0.69        38.99         1.94         7.13        24.56 
TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA 
       12.33        29.72         9.47        38.07        32.91        30.18 
TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO 
       30.44        23.90        23.84        26.70         0.79        25.81 
TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 
       26.40        12.20        39.72         8.48        18.21        18.90 
TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY 
       13.25        16.57        28.77        25.94        29.95        29.85 
TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 
       40.41        41.13        39.78        29.82        23.11        18.48 
TCGA-EW-A1P7 TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       30.08         7.86        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        17.52         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 
       18.12         2.60        62.47        11.84        11.57        32.75 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U 
       17.06        15.32        14.70        14.47        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  RHOA MUTATED RHOA WILD-TYPE 
          4.41           0.03 
  RHOA MUTATED RHOA WILD-TYPE 
         25.05         282.90 
  RHOA MUTATED RHOA WILD-TYPE 
        14.975         31.000 
[1] "4.4 - 25.1 (15.0)"  "0.0 - 282.9 (31.0)"
[1] "hr="    "440000"
D77V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  RHOA MUTATED         0        0        0        0         1         1
  RHOA WILD-TYPE      88       71        6        4       325       226
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  RHOA MUTATED           0          1          0          2        0       0
  RHOA WILD-TYPE         2        136         24         55       15      12
D77V3, multiclass
            clus
vv           RHOA MUTATED RHOA WILD-TYPE
  STAGE I               0             88
  STAGE IA              0             71
  STAGE IB              0              6
  STAGE II              0              4
  STAGE IIA             1            325
  STAGE IIB             1            226
  STAGE III             0              2
  STAGE IIIA            1            136
  STAGE IIIB            0             24
  STAGE IIIC            2             55
  STAGE IV              0             15
  STAGE X               0             12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              T1  T2  T3  T4
  RHOA MUTATED     0   1   4   1
  RHOA WILD-TYPE 257 563 116  34
D77V4, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  T1            0            257
  T2            1            563
  T3            4            116
  T4            1             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus              N0  N1  N2  N3
  RHOA MUTATED     2   1   0   2
  RHOA WILD-TYPE 460 324 107  66
D77V5, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  N0            2            460
  N1            1            324
  N2            0            107
  N3            2             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D77V6, binary
                cls
clus               0   1
  RHOA MUTATED     6   0
  RHOA WILD-TYPE 836  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      6    0
  RHOA WILD-TYPE  836   16
   clus
vv  RHOA MUTATED RHOA WILD-TYPE
  0            6            836
  1            0             16
[1] 2 2
[1] FALSE
D77V7, binary
                cls
clus               0   1
  RHOA MUTATED     6   0
  RHOA WILD-TYPE 962   9
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      6    0
  RHOA WILD-TYPE  962    9
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  FEMALE            6            962
  MALE              0              9
[1] 2 2
[1] FALSE
D77V8, binary
                cls
clus               0   1
  RHOA MUTATED     1   3
  RHOA WILD-TYPE 386 499
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      1    3
  RHOA WILD-TYPE  386  499
     clus
vv    RHOA MUTATED RHOA WILD-TYPE
  NO             1            386
  YES            3            499
[1] 2 2
[1] FALSE
                vv
clus             INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  RHOA MUTATED                            0                             3
  RHOA WILD-TYPE                          1                           708
                vv
clus             INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  RHOA MUTATED                                3                   0
  RHOA WILD-TYPE                            169                   5
                vv
clus             METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  RHOA MUTATED                       0                                0
  RHOA WILD-TYPE                     6                               27
                vv
clus             MUCINOUS CARCINOMA OTHER, SPECIFY
  RHOA MUTATED                    0              0
  RHOA WILD-TYPE                 14             40
D77V9, multiclass
                                  clus
vv                                 RHOA MUTATED RHOA WILD-TYPE
  INFILTRATING CARCINOMA NOS                  0              1
  INFILTRATING DUCTAL CARCINOMA               3            708
  INFILTRATING LOBULAR CARCINOMA              3            169
  MEDULLARY CARCINOMA                         0              5
  METAPLASTIC CARCINOMA                       0              6
  MIXED HISTOLOGY (PLEASE SPECIFY)            0             27
  MUCINOUS CARCINOMA                          0             14
  OTHER, SPECIFY                              0             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D77V10, continuous
                vv
clus             AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  RHOA MUTATED                                  0     0
  RHOA WILD-TYPE                                1    57
                vv
clus             BLACK OR AFRICAN AMERICAN WHITE
  RHOA MUTATED                           0     4
  RHOA WILD-TYPE                       121   701
D77V11, multiclass
                                  clus
vv                                 RHOA MUTATED RHOA WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE            0              1
  ASIAN                                       0             57
  BLACK OR AFRICAN AMERICAN                   0            121
  WHITE                                       4            701
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D77V12, binary
                cls
clus               0   1
  RHOA MUTATED     0   3
  RHOA WILD-TYPE  34 769
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      0    3
  RHOA WILD-TYPE   34  769
                        clus
vv                       RHOA MUTATED RHOA WILD-TYPE
  HISPANIC OR LATINO                0             34
  NOT HISPANIC OR LATINO            3            769
[1] 2 2
[1] FALSE

Clustering(78) Variable = MAMLD1 MUTATION ANALYSIS
D78V1, survival
                  sevent
clus2                0   1
  MAMLD1 MUTATED     8   2
  MAMLD1 WILD-TYPE 818 136
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
              10              954 
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
               2              136 
$`MAMLD1 MUTATED`
TCGA-D8-A146 TCGA-A2-A3Y0 TCGA-A8-A07R TCGA-AN-A0AK TCGA-BH-A0C7 TCGA-BH-A0HF 
       21.14        50.83         8.98         7.36        90.97        23.90 
TCGA-BH-A18G TCGA-BH-A1FG TCGA-BH-A2L8 TCGA-EW-A1P8 
        4.90       122.83        20.12         7.86 

$`MAMLD1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC TCGA-E2-A1L8 
       89.16        10.42        14.79        50.79        16.47        73.64 
TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD TCGA-GM-A2DO 
       50.07        26.99        15.68        52.96        75.02        85.35 
TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB TCGA-A1-A0SD 
       24.95        25.05        14.79        40.08         8.52        14.37 
TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI TCGA-A1-A0SJ 
       43.43        48.10        14.27        47.24        20.88        13.68 
TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N TCGA-A2-A04P 
       31.79         7.96        39.32        18.21       143.15        18.02 
TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W TCGA-A2-A04X 
       78.41       121.94        73.84        87.25       101.98        55.43 
TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP TCGA-A2-A0CR 
      136.73        99.12        24.79       114.81        92.48       107.93 
TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW TCGA-A2-A0CX 
       77.19        75.25         5.19        98.99       107.93        56.81 
TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 TCGA-A2-A0D4 
       53.13        67.33        34.55        33.76        61.58        25.22 
TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ TCGA-A2-A0ER 
      101.72       134.40        80.28       118.45        79.76        74.40 
TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW TCGA-A2-A0EX 
       72.00        35.05        34.29        31.82        61.94        24.72 
TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW TCGA-A2-A0SX 
       63.29        99.19        54.64        27.12        44.88        50.43 
TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 TCGA-A2-A0T4 
       44.28        17.52        17.13         8.38        49.84        20.52 
TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD TCGA-A2-A0YE 
       17.46        18.90        20.75        32.55        25.28        18.21 
TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ TCGA-A2-A0YK 
       50.47        21.90        21.67        49.48        18.61        19.33 
TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW TCGA-A2-A1FX 
       48.46        31.73        23.77        23.47        17.36        60.72 
TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 TCGA-A2-A25B 
       22.45        20.25        19.20        16.47        52.47        42.44 
TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC TCGA-A2-A3KD 
       17.19        18.15       105.34        10.59        36.23        39.65 
TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW TCGA-A2-A3XX 
       33.93        91.07        29.98        32.75        56.28        47.31 
TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A4RW TCGA-A2-A4RX TCGA-A2-A4RY TCGA-A2-A4S0 
       35.93        50.37         7.30        24.39        21.30        23.21 
TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE TCGA-A7-A0CG TCGA-A7-A0CH 
       26.96        21.14        21.90        35.31        34.29        35.47 
TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB TCGA-A7-A0DC TCGA-A7-A13D 
       30.61        37.45        35.67        33.11        29.79        31.73 
TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G TCGA-A7-A26J TCGA-A7-A3IY 
       20.19        25.15        29.56        23.74        20.61        11.34 
TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 TCGA-A7-A4SA TCGA-A7-A4SB 
       10.59        10.29        13.41        14.70        14.93        13.74 
TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF TCGA-A7-A56D TCGA-A7-A5ZV 
       14.66        14.50        21.17        17.92        14.73        12.10 
TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q TCGA-A8-A06R TCGA-A8-A06X 
       10.72        13.02        13.02         1.02        17.98        31.00 
TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 TCGA-A8-A079 TCGA-A8-A07B 
       26.01         1.02        17.03        53.98         9.01        43.00 
TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I TCGA-A8-A07J TCGA-A8-A07L 
       33.99        18.97        18.97        14.01        12.00        32.05 
TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07U TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 
        9.99        10.98        24.99         9.99        45.07        18.05 
TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G 
       36.95        13.02         0.99        38.01        28.96        19.96 
TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R 
       12.00        37.05         9.99        31.00        31.00         0.99 
TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 
      112.08        43.00        40.01        30.97        41.98        12.00 
TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N 
        9.99         9.99        12.00        50.04        33.07         1.02 
TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X 
       25.02         8.98        19.04        15.02         0.99        14.01 
TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 
       12.00        19.04        13.02        21.04         0.99        27.02 
TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H 
       17.03        38.04        19.23        22.95        73.91         5.72 
TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF 
       22.26        73.05        99.35        40.57        86.66        90.71 
TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI 
       60.92        87.12        26.04        74.14        33.04        19.33 
TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP 
       14.66        32.45         6.48        16.31        14.83        22.19 
TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH 
       25.05        14.99        15.48        23.24        24.79        16.80 
TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 
       14.96        17.42         0.33         0.33         0.23         0.33 
TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AL 
        0.62         2.96         1.78         1.71         9.96         7.46 
TCGA-AN-A0AM TCGA-AN-A0AR TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF 
        0.16         0.33         0.33         0.33         6.44         5.65 
TCGA-AN-A0FJ TCGA-AN-A0FK TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT 
        7.96         7.00         7.59         7.17         6.90         7.04 
TCGA-AN-A0FV TCGA-AN-A0FW TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 
        0.33         0.36         0.33         0.33         0.33         0.53 
TCGA-AN-A0XL TCGA-AN-A0XN TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS 
        5.36         0.33        12.33         0.30         0.33         0.33 
TCGA-AN-A0XT TCGA-AN-A0XU TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M 
        0.33         0.33         5.33         5.59        80.28        61.35 
TCGA-AO-A03N TCGA-AO-A03O TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U 
       66.77        81.63        95.70        68.75        69.83        58.95 
TCGA-AO-A03V TCGA-AO-A0J2 TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 
       44.42        32.78        21.40        52.18        26.04        37.48 
TCGA-AO-A0J7 TCGA-AO-A0J8 TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC 
       20.32        22.36        53.03        21.53        50.70        50.86 
TCGA-AO-A0JD TCGA-AO-A0JE TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM 
       72.00        76.77        65.10        62.04        55.33        71.80 
TCGA-AO-A124 TCGA-AO-A125 TCGA-AO-A126 TCGA-AO-A128 TCGA-AO-A129 TCGA-AO-A12A 
      115.27       113.62       108.72       106.78       108.03       102.31 
TCGA-AO-A12B TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F TCGA-AO-A12G TCGA-AO-A12H 
       98.27        82.68        70.42        60.56        53.88        40.57 
TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS TCGA-AQ-A04H TCGA-AQ-A04J 
       20.45        97.08        82.62        11.51        24.79        26.93 
TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS TCGA-AR-A0TU TCGA-AR-A0TX 
      130.09        15.62        32.52        84.10        23.31        64.83 
TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 TCGA-AR-A1AH 
       55.86        65.36       133.22        83.87       134.14       125.16 
TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN TCGA-AR-A1AO 
      108.36       101.00       103.86        97.68        96.00        86.07 
TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU TCGA-AR-A1AV 
       93.90        99.32        37.81        41.82        94.29        61.28 
TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K TCGA-AR-A24L 
       86.53        86.43        33.73       160.90        50.89        94.22 
TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q TCGA-AR-A24R 
      120.33        99.78       118.59         2.76       104.28       112.77 
TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W TCGA-AR-A24X 
       97.84       105.27       102.84       105.30        50.96        98.76 
TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 TCGA-AR-A255 
       98.66        89.00        99.62        93.30        85.64        71.05 
TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK TCGA-AR-A2LM 
       93.83       166.42        20.25        86.53        54.21        63.62 
TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP TCGA-AR-A5QQ 
       38.17        39.39        40.54        33.30        38.96        10.59 
TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 TCGA-B6-A0IA 
       77.62       143.38       281.29        32.58        11.90       275.87 
TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH TCGA-B6-A0IJ 
      129.57        50.70        65.52       146.50       112.37       233.62 
TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP TCGA-B6-A0IQ 
       18.77       127.33        84.59       165.76       129.07       140.88 
TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN TCGA-B6-A0RO 
      255.68        68.45       212.25       234.28       263.28       162.05 
TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV TCGA-B6-A0WS 
      102.77       140.28        89.46       282.90       169.51        97.48 
TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY TCGA-B6-A0WZ 
      188.68        79.46        18.35        21.01       113.79       206.86 
TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 TCGA-B6-A1KC 
      129.70       245.10        28.27        68.94        58.55        43.59 
TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX TCGA-B6-A400 
      101.52        73.51       139.17       170.17        37.87         7.07 
TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B TCGA-B6-A40C 
       85.35        74.99        68.12        18.84       103.63        71.15 
TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ TCGA-BH-A0B0 
       62.93        59.84        20.45        25.55        63.09        81.44 
TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 TCGA-BH-A0B8 
       37.74        39.55        39.16        70.22        84.13        51.58 
TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF TCGA-BH-A0BG 
       51.68        37.22        32.02        18.21        43.53        61.51 
TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP TCGA-BH-A0BQ 
       21.70        74.89        61.68        72.23        75.48        74.14 
TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW TCGA-BH-A0BZ 
       76.60        85.87        77.75        49.94        77.95        74.14 
TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0DD TCGA-BH-A0DE TCGA-BH-A0DG 
       41.75        46.39        89.06        81.73        77.98        67.10 
TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL TCGA-BH-A0DP TCGA-BH-A0DQ 
       38.01        29.98        13.91        78.28        15.65         3.22 
TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX TCGA-BH-A0DZ TCGA-BH-A0E0 
        2.56        79.00        67.86        70.88        16.27         4.41 
TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 TCGA-BH-A0E9 TCGA-BH-A0EB 
       15.68        14.30         9.63        44.81        81.83        24.49 
TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ TCGA-BH-A0H0 TCGA-BH-A0H3 
       31.00        63.32        30.35        10.78        15.16        63.39 
TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 TCGA-BH-A0HA TCGA-BH-A0HB 
       53.26        24.56        23.08        41.00        52.96        26.50 
TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP 
       20.38         5.85         2.37        16.96         2.50        13.61 
TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX 
       36.85        12.89        51.32        27.25        50.79         5.59 
TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F 
       23.93        24.95        42.35        44.81        23.05        32.91 
TCGA-BH-A18I TCGA-BH-A18J TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N 
       35.93        20.12        90.84        26.66        72.56        37.74 
TCGA-BH-A18P TCGA-BH-A18Q TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U 
       30.28        55.63        37.55        66.05         7.36        51.39 
TCGA-BH-A18V TCGA-BH-A1EN TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU 
       51.16        69.93        91.99       113.82        82.85        42.28 
TCGA-BH-A1EV TCGA-BH-A1EW TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 
       12.00        55.69        49.58        17.69        25.81        31.53 
TCGA-BH-A1F6 TCGA-BH-A1F8 TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FH 
       97.48        25.08       114.15        33.17        74.73        33.99 
TCGA-BH-A1FJ TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU 
       63.35        55.00        45.63        72.07        53.98        55.50 
TCGA-BH-A201 TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 
       28.14        26.14        38.60        83.31        57.83       130.16 
TCGA-BH-A28O TCGA-BH-A28Q TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.82        36.79        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
        0.16        12.03        12.33        12.95        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.53        12.36        12.95        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM 
       15.22        14.73        21.83        14.50        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU 
       55.30        16.41        15.85        16.31        16.64        12.99 
TCGA-D8-A1XV TCGA-D8-A1XW TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 
       15.16        43.04        16.54        15.32        15.52         9.93 
TCGA-D8-A1Y2 TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H 
       14.24        14.14        17.42        16.04        13.45        13.05 
TCGA-D8-A27I TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P 
       14.43        48.03        16.41        13.48        17.06         1.61 
TCGA-D8-A27R TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 
       10.09        13.08        12.53        12.26        33.37        18.51 
TCGA-D8-A4Z1 TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A 
       21.67        43.00        34.42        27.52        46.59        40.41 
TCGA-E2-A10B TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O 
       37.51        40.11        28.44        28.87        47.15        44.68 
TCGA-E2-A14P TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U 
       40.96        38.24        38.60        33.17        75.98        43.33 
TCGA-E2-A14V TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 
       34.26        32.02        31.96        69.34        18.51        63.62 
TCGA-E2-A152 TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 
       69.96        23.24        19.43        21.04        23.87        25.05 
TCGA-E2-A15A TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G 
       23.34        22.82        17.29        20.71        21.63        18.21 
TCGA-E2-A15H TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15K TCGA-E2-A15L TCGA-E2-A15M 
       12.92        55.63        53.92         9.04        20.58        11.05 
TCGA-E2-A15P TCGA-E2-A15R TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 
       19.56        56.94        14.07        51.39        76.57        53.62 
TCGA-E2-A1B1 TCGA-E2-A1B4 TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE 
       87.22        33.01        32.35        28.50        37.25        77.65 
TCGA-E2-A1IF TCGA-E2-A1IG TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK 
       37.41        70.36        33.73        33.70        28.44        59.18 
TCGA-E2-A1IL TCGA-E2-A1IN TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 
        3.88        22.19        60.99        11.08        54.18        60.36 
TCGA-E2-A1L9 TCGA-E2-A1LA TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI 
       19.66        24.59        75.81        28.90       106.75       102.61 
TCGA-E2-A1LK TCGA-E2-A1LL TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z 
        8.75        43.04        52.73        34.55        43.56         8.28 
TCGA-E2-A570 TCGA-E2-A573 TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 
       30.61        34.92        38.76        34.82        32.88        36.82 
TCGA-E9-A1N8 TCGA-E9-A1N9 TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE 
       34.16        36.20        36.56        39.55        41.62        35.77 
TCGA-E9-A1NF TCGA-E9-A1NG TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 
       35.24        25.84        18.94         9.86        24.82        28.27 
TCGA-E9-A1R2 TCGA-E9-A1R3 TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 
       34.95         2.56         6.12         3.02        11.15        48.23 
TCGA-E9-A1RA TCGA-E9-A1RB TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF 
       45.01        32.09        40.24         1.12        46.65         6.58 
TCGA-E9-A1RG TCGA-E9-A1RH TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 
       21.27        46.59        47.64        34.45        32.05        42.25 
TCGA-E9-A229 TCGA-E9-A22A TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G 
       37.74        39.09        38.37        41.03        41.72        40.73 
TCGA-E9-A22H TCGA-E9-A243 TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 
       40.50        20.12         0.69        38.99         1.94         7.13 
TCGA-E9-A24A TCGA-E9-A295 TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 
       24.56        12.33        29.72         9.47        38.07        32.91 
TCGA-E9-A3QA TCGA-E9-A3X8 TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL 
       30.18        30.44        23.90        23.84        26.70         0.79 
TCGA-E9-A5UO TCGA-E9-A5UP TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ 
       25.81        26.40        12.20        39.72         8.48        18.21 
TCGA-EW-A1J1 TCGA-EW-A1J2 TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX 
       18.90        13.25        16.57        28.77        25.94        29.95 
TCGA-EW-A1OY TCGA-EW-A1OZ TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 
       29.85        40.41        41.13        39.78        29.82        23.11 
TCGA-EW-A1P6 TCGA-EW-A1P7 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD 
       18.48        30.08        18.90        19.99         6.15        13.94 
TCGA-EW-A1PE TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV 
       10.52        34.55        19.96        55.00        52.73        25.91 
TCGA-EW-A2FW TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 
       22.09        34.03        17.49        17.52         7.40       109.87 
TCGA-GM-A2D9 TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH 
       59.57       216.76        79.10        83.34        70.85        72.10 
TCGA-GM-A2DI TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW 
       85.15        86.96       115.69       106.06       101.62       110.50 
TCGA-GM-A3NY TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV 
       38.20        43.73        69.30        66.38        72.03        13.55 
TCGA-GM-A5PX TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 
       18.12         2.60        62.47        11.84        11.57        32.75 
TCGA-LL-A5YL TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U 
       17.06        15.32        14.70        14.47        27.91        22.39 
TCGA-OK-A5Q2 TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV 
        2.10        36.30        58.52        31.99        58.62        34.92 
TCGA-OL-A5RW TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H 
       36.36        28.87        24.72        22.32        20.38        26.70 
TCGA-OL-A66I TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       23.47        65.62        41.92        47.01        64.21        86.96 

  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
            4.90             0.03 
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
          122.83           282.90 
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
           20.63            31.00 
[1] "4.9 - 122.8 (20.6)" "0.0 - 282.9 (31.0)"
[1] "hr=" "1.6"
D78V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  MAMLD1 MUTATED         1        2        0        0         3         2
  MAMLD1 WILD-TYPE      87       69        6        4       323       225
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  MAMLD1 MUTATED           0          0          0          2        0       0
  MAMLD1 WILD-TYPE         2        137         24         55       15      12
D78V3, multiclass
            clus
vv           MAMLD1 MUTATED MAMLD1 WILD-TYPE
  STAGE I                 1               87
  STAGE IA                2               69
  STAGE IB                0                6
  STAGE II                0                4
  STAGE IIA               3              323
  STAGE IIB               2              225
  STAGE III               0                2
  STAGE IIIA              0              137
  STAGE IIIB              0               24
  STAGE IIIC              2               55
  STAGE IV                0               15
  STAGE X                 0               12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                T1  T2  T3  T4
  MAMLD1 MUTATED     3   7   0   0
  MAMLD1 WILD-TYPE 254 557 120  35
D78V4, multiclass
    clus
vv   MAMLD1 MUTATED MAMLD1 WILD-TYPE
  T1              3              254
  T2              7              557
  T3              0              120
  T4              0               35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus                N0  N1  N2  N3
  MAMLD1 MUTATED     5   2   0   2
  MAMLD1 WILD-TYPE 457 323 107  66
D78V5, multiclass
    clus
vv   MAMLD1 MUTATED MAMLD1 WILD-TYPE
  N0              5              457
  N1              2              323
  N2              0              107
  N3              2               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D78V6, binary
                  cls
clus                 0   1
  MAMLD1 MUTATED     9   0
  MAMLD1 WILD-TYPE 833  16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAMLD1 MUTATED      9    0
  MAMLD1 WILD-TYPE  833   16
   clus
vv  MAMLD1 MUTATED MAMLD1 WILD-TYPE
  0              9              833
  1              0               16
[1] 2 2
[1] FALSE
D78V7, binary
                  cls
clus                 0   1
  MAMLD1 MUTATED    10   0
  MAMLD1 WILD-TYPE 958   9
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAMLD1 MUTATED     10    0
  MAMLD1 WILD-TYPE  958    9
        clus
vv       MAMLD1 MUTATED MAMLD1 WILD-TYPE
  FEMALE             10              958
  MALE                0                9
[1] 2 2
[1] FALSE
D78V8, binary
                  cls
clus                 0   1
  MAMLD1 MUTATED     6   2
  MAMLD1 WILD-TYPE 381 500
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAMLD1 MUTATED      6    2
  MAMLD1 WILD-TYPE  381  500
     clus
vv    MAMLD1 MUTATED MAMLD1 WILD-TYPE
  NO               6              381
  YES              2              500
[1] 2 2
[1] FALSE
                  vv
clus               INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  MAMLD1 MUTATED                            0                             9
  MAMLD1 WILD-TYPE                          1                           702
                  vv
clus               INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  MAMLD1 MUTATED                                1                   0
  MAMLD1 WILD-TYPE                            171                   5
                  vv
clus               METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  MAMLD1 MUTATED                       0                                0
  MAMLD1 WILD-TYPE                     6                               27
                  vv
clus               MUCINOUS CARCINOMA OTHER, SPECIFY
  MAMLD1 MUTATED                    0              0
  MAMLD1 WILD-TYPE                 14             40
D78V9, multiclass
                                  clus
vv                                 MAMLD1 MUTATED MAMLD1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                    0                1
  INFILTRATING DUCTAL CARCINOMA                 9              702
  INFILTRATING LOBULAR CARCINOMA                1              171
  MEDULLARY CARCINOMA                           0                5
  METAPLASTIC CARCINOMA                         0                6
  MIXED HISTOLOGY (PLEASE SPECIFY)              0               27
  MUCINOUS CARCINOMA                            0               14
  OTHER, SPECIFY                                0               40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D78V10, continuous
                  vv
clus               AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  MAMLD1 MUTATED                                  0     0
  MAMLD1 WILD-TYPE                                1    57
                  vv
clus               BLACK OR AFRICAN AMERICAN WHITE
  MAMLD1 MUTATED                           1     8
  MAMLD1 WILD-TYPE                       120   697
D78V11, multiclass
                                  clus
vv                                 MAMLD1 MUTATED MAMLD1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE              0                1
  ASIAN                                         0               57
  BLACK OR AFRICAN AMERICAN                     1              120
  WHITE                                         8              697
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D78V12, binary
                  cls
clus                 0   1
  MAMLD1 MUTATED     0   8
  MAMLD1 WILD-TYPE  34 764
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAMLD1 MUTATED      0    8
  MAMLD1 WILD-TYPE   34  764
                        clus
vv                       MAMLD1 MUTATED MAMLD1 WILD-TYPE
  HISPANIC OR LATINO                  0               34
  NOT HISPANIC OR LATINO              8              764
[1] 2 2
[1] FALSE

Clustering(79) Variable = OR8D1 MUTATION ANALYSIS
D79V1, survival
                 sevent
clus2               0   1
  OR8D1 MUTATED     5   0
  OR8D1 WILD-TYPE 821 138
  OR8D1 MUTATED OR8D1 WILD-TYPE 
              5             959 
  OR8D1 MUTATED OR8D1 WILD-TYPE 
              0             138 
$`OR8D1 MUTATED`
TCGA-AO-A128 TCGA-AO-A12B TCGA-AR-A0TU TCGA-D8-A1XW TCGA-E2-A15K 
      106.78        98.27        23.31        43.04         9.04 

$`OR8D1 WILD-TYPE`
TCGA-A1-A0SP TCGA-A2-A04V TCGA-A2-A04Y TCGA-A2-A0CQ TCGA-A2-A1G4 TCGA-A2-A25A 
       19.20        63.12        36.13        88.60        19.56       107.70 
TCGA-A7-A0CD TCGA-A7-A13G TCGA-A7-A26E TCGA-A7-A26F TCGA-A7-A26H TCGA-A7-A26I 
       38.30        23.61        31.36        24.26        23.80        21.73 
TCGA-A7-A2KD TCGA-A7-A3J1 TCGA-A7-A426 TCGA-A7-A5ZX TCGA-A8-A06T TCGA-A8-A06U 
       22.32        11.28        11.97        11.05        53.06        29.03 
TCGA-A8-A07E TCGA-A8-A084 TCGA-A8-A08F TCGA-A8-A08S TCGA-A8-A091 TCGA-A8-A093 
       19.99        15.06        33.01        33.01        33.01        17.95 
TCGA-A8-A09C TCGA-A8-A09E TCGA-A8-A09I TCGA-A8-A09K TCGA-AC-A3W5 TCGA-AC-A3W6 
        1.02        49.05        45.07        29.98        16.57        19.79 
TCGA-AC-A5EI TCGA-AC-A5XS TCGA-AC-A62X TCGA-AO-A0JI TCGA-AO-A1KT TCGA-AQ-A0Y5 
       14.53        19.33        13.71        50.24        17.79         5.65 
TCGA-AQ-A54N TCGA-AQ-A54O TCGA-AR-A1AM TCGA-AR-A1AR TCGA-AR-A2LL TCGA-AR-A2LR 
        2.56        32.91        98.33        17.23        66.15        57.27 
TCGA-AR-A5QM TCGA-B6-A0I8 TCGA-BH-A0B6 TCGA-BH-A0DO TCGA-BH-A0EA TCGA-BH-A18H 
       73.35        24.62        81.63        54.05        32.58        21.44 
TCGA-BH-A1F5 TCGA-C8-A1HL TCGA-D8-A146 TCGA-E2-A158 TCGA-E2-A15O TCGA-E2-A1BC 
       89.16        10.42        21.14        14.79        50.79        16.47 
TCGA-E2-A1L8 TCGA-E2-A1LG TCGA-E2-A2P5 TCGA-EW-A1J5 TCGA-EW-A1P3 TCGA-GM-A2DD 
       73.64        50.07        26.99        15.68        52.96        75.02 
TCGA-GM-A2DO TCGA-LL-A440 TCGA-LL-A50Y TCGA-LL-A5YP TCGA-OL-A5RU TCGA-A1-A0SB 
       85.35        24.95        25.05        14.79        40.08         8.52 
TCGA-A1-A0SD TCGA-A1-A0SE TCGA-A1-A0SF TCGA-A1-A0SG TCGA-A1-A0SH TCGA-A1-A0SI 
       14.37        43.43        48.10        14.27        47.24        20.88 
TCGA-A1-A0SJ TCGA-A1-A0SK TCGA-A1-A0SM TCGA-A1-A0SN TCGA-A1-A0SQ TCGA-A2-A04N 
       13.68        31.79         7.96        39.32        18.21       143.15 
TCGA-A2-A04P TCGA-A2-A04Q TCGA-A2-A04R TCGA-A2-A04T TCGA-A2-A04U TCGA-A2-A04W 
       18.02        78.41       121.94        73.84        87.25       101.98 
TCGA-A2-A04X TCGA-A2-A0CK TCGA-A2-A0CL TCGA-A2-A0CM TCGA-A2-A0CO TCGA-A2-A0CP 
       55.43       136.73        99.12        24.79       114.81        92.48 
TCGA-A2-A0CR TCGA-A2-A0CS TCGA-A2-A0CT TCGA-A2-A0CU TCGA-A2-A0CV TCGA-A2-A0CW 
      107.93        77.19        75.25         5.19        98.99       107.93 
TCGA-A2-A0CX TCGA-A2-A0CZ TCGA-A2-A0D0 TCGA-A2-A0D1 TCGA-A2-A0D2 TCGA-A2-A0D3 
       56.81        53.13        67.33        34.55        33.76        61.58 
TCGA-A2-A0D4 TCGA-A2-A0EM TCGA-A2-A0EN TCGA-A2-A0EO TCGA-A2-A0EP TCGA-A2-A0EQ 
       25.22       101.72       134.40        80.28       118.45        79.76 
TCGA-A2-A0ER TCGA-A2-A0ES TCGA-A2-A0ET TCGA-A2-A0EU TCGA-A2-A0EV TCGA-A2-A0EW 
       74.40        72.00        35.05        34.29        31.82        61.94 
TCGA-A2-A0EX TCGA-A2-A0EY TCGA-A2-A0ST TCGA-A2-A0SU TCGA-A2-A0SV TCGA-A2-A0SW 
       24.72        63.29        99.19        54.64        27.12        44.88 
TCGA-A2-A0SX TCGA-A2-A0SY TCGA-A2-A0T0 TCGA-A2-A0T1 TCGA-A2-A0T2 TCGA-A2-A0T3 
       50.43        44.28        17.52        17.13         8.38        49.84 
TCGA-A2-A0T4 TCGA-A2-A0T5 TCGA-A2-A0T6 TCGA-A2-A0T7 TCGA-A2-A0YC TCGA-A2-A0YD 
       20.52        17.46        18.90        20.75        32.55        25.28 
TCGA-A2-A0YE TCGA-A2-A0YF TCGA-A2-A0YG TCGA-A2-A0YH TCGA-A2-A0YI TCGA-A2-A0YJ 
       18.21        50.47        21.90        21.67        49.48        18.61 
TCGA-A2-A0YK TCGA-A2-A0YL TCGA-A2-A0YM TCGA-A2-A0YT TCGA-A2-A1FV TCGA-A2-A1FW 
       19.33        48.46        31.73        23.77        23.47        17.36 
TCGA-A2-A1FX TCGA-A2-A1FZ TCGA-A2-A1G0 TCGA-A2-A1G1 TCGA-A2-A1G6 TCGA-A2-A259 
       60.72        22.45        20.25        19.20        16.47        52.47 
TCGA-A2-A25B TCGA-A2-A25C TCGA-A2-A25D TCGA-A2-A25E TCGA-A2-A25F TCGA-A2-A3KC 
       42.44        17.19        18.15       105.34        10.59        36.23 
TCGA-A2-A3KD TCGA-A2-A3XS TCGA-A2-A3XT TCGA-A2-A3XU TCGA-A2-A3XV TCGA-A2-A3XW 
       39.65        33.93        91.07        29.98        32.75        56.28 
TCGA-A2-A3XX TCGA-A2-A3XY TCGA-A2-A3XZ TCGA-A2-A3Y0 TCGA-A2-A4RW TCGA-A2-A4RX 
       47.31        35.93        50.37        50.83         7.30        24.39 
TCGA-A2-A4RY TCGA-A2-A4S0 TCGA-A2-A4S1 TCGA-A2-A4S2 TCGA-A2-A4S3 TCGA-A7-A0CE 
       21.30        23.21        26.96        21.14        21.90        35.31 
TCGA-A7-A0CG TCGA-A7-A0CH TCGA-A7-A0CJ TCGA-A7-A0D9 TCGA-A7-A0DA TCGA-A7-A0DB 
       34.29        35.47        30.61        37.45        35.67        33.11 
TCGA-A7-A0DC TCGA-A7-A13D TCGA-A7-A13E TCGA-A7-A13F TCGA-A7-A13H TCGA-A7-A26G 
       29.79        31.73        20.19        25.15        29.56        23.74 
TCGA-A7-A26J TCGA-A7-A3IY TCGA-A7-A3IZ TCGA-A7-A3J0 TCGA-A7-A3RF TCGA-A7-A425 
       20.61        11.34        10.59        10.29        13.41        14.70 
TCGA-A7-A4SA TCGA-A7-A4SB TCGA-A7-A4SC TCGA-A7-A4SD TCGA-A7-A4SE TCGA-A7-A4SF 
       14.93        13.74        14.66        14.50        21.17        17.92 
TCGA-A7-A56D TCGA-A7-A5ZV TCGA-A7-A5ZW TCGA-A8-A06O TCGA-A8-A06P TCGA-A8-A06Q 
       14.73        12.10        10.72        13.02        13.02         1.02 
TCGA-A8-A06R TCGA-A8-A06X TCGA-A8-A06Y TCGA-A8-A06Z TCGA-A8-A075 TCGA-A8-A076 
       17.98        31.00        26.01         1.02        17.03        53.98 
TCGA-A8-A079 TCGA-A8-A07B TCGA-A8-A07C TCGA-A8-A07F TCGA-A8-A07G TCGA-A8-A07I 
        9.01        43.00        33.99        18.97        18.97        14.01 
TCGA-A8-A07J TCGA-A8-A07L TCGA-A8-A07O TCGA-A8-A07P TCGA-A8-A07R TCGA-A8-A07U 
       12.00        32.05         9.99        10.98         8.98        24.99 
TCGA-A8-A07W TCGA-A8-A07Z TCGA-A8-A082 TCGA-A8-A085 TCGA-A8-A086 TCGA-A8-A08A 
        9.99        45.07        18.05        36.95        13.02         0.99 
TCGA-A8-A08B TCGA-A8-A08C TCGA-A8-A08G TCGA-A8-A08I TCGA-A8-A08J TCGA-A8-A08L 
       38.01        28.96        19.96        12.00        37.05         9.99 
TCGA-A8-A08O TCGA-A8-A08P TCGA-A8-A08R TCGA-A8-A08T TCGA-A8-A08X TCGA-A8-A08Z 
       31.00        31.00         0.99       112.08        43.00        40.01 
TCGA-A8-A092 TCGA-A8-A095 TCGA-A8-A097 TCGA-A8-A099 TCGA-A8-A09A TCGA-A8-A09B 
       30.97        41.98        12.00         9.99         9.99        12.00 
TCGA-A8-A09D TCGA-A8-A09M TCGA-A8-A09N TCGA-A8-A09Q TCGA-A8-A09R TCGA-A8-A09T 
       50.04        33.07         1.02        25.02         8.98        19.04 
TCGA-A8-A09V TCGA-A8-A09W TCGA-A8-A09X TCGA-A8-A0A1 TCGA-A8-A0A2 TCGA-A8-A0A4 
       15.02         0.99        14.01        12.00        19.04        13.02 
TCGA-A8-A0A6 TCGA-A8-A0A7 TCGA-A8-A0A9 TCGA-A8-A0AB TCGA-A8-A0AD TCGA-AC-A23C 
       21.04         0.99        27.02        17.03        38.04        19.23 
TCGA-AC-A23E TCGA-AC-A23G TCGA-AC-A23H TCGA-AC-A2B8 TCGA-AC-A2BK TCGA-AC-A2BM 
       22.95        73.91         5.72        22.26        73.05        99.35 
TCGA-AC-A2FB TCGA-AC-A2FE TCGA-AC-A2FF TCGA-AC-A2FG TCGA-AC-A2FK TCGA-AC-A2FM 
       40.57        86.66        90.71        60.92        87.12        26.04 
TCGA-AC-A2FO TCGA-AC-A2QH TCGA-AC-A2QI TCGA-AC-A2QJ TCGA-AC-A3BB TCGA-AC-A3EH 
       74.14        33.04        19.33        14.66        32.45         6.48 
TCGA-AC-A3HN TCGA-AC-A3OD TCGA-AC-A3QP TCGA-AC-A3TM TCGA-AC-A3TN TCGA-AC-A3W7 
       16.31        14.83        22.19        25.05        14.99        15.48 
TCGA-AC-A3YI TCGA-AC-A3YJ TCGA-AC-A5EH TCGA-AC-A5XU TCGA-AC-A62Y TCGA-AN-A03X 
       23.24        24.79        16.80        14.96        17.42         0.33 
TCGA-AN-A03Y TCGA-AN-A041 TCGA-AN-A046 TCGA-AN-A049 TCGA-AN-A04A TCGA-AN-A04C 
        0.33         0.23         0.33         0.62         2.96         1.78 
TCGA-AN-A04D TCGA-AN-A0AJ TCGA-AN-A0AK TCGA-AN-A0AL TCGA-AN-A0AM TCGA-AN-A0AR 
        1.71         9.96         7.36         7.46         0.16         0.33 
TCGA-AN-A0AS TCGA-AN-A0AT TCGA-AN-A0FD TCGA-AN-A0FF TCGA-AN-A0FJ TCGA-AN-A0FK 
        0.33         0.33         6.44         5.65         7.96         7.00 
TCGA-AN-A0FL TCGA-AN-A0FN TCGA-AN-A0FS TCGA-AN-A0FT TCGA-AN-A0FV TCGA-AN-A0FW 
        7.59         7.17         6.90         7.04         0.33         0.36 
TCGA-AN-A0FX TCGA-AN-A0FY TCGA-AN-A0FZ TCGA-AN-A0G0 TCGA-AN-A0XL TCGA-AN-A0XN 
        0.33         0.33         0.33         0.53         5.36         0.33 
TCGA-AN-A0XO TCGA-AN-A0XP TCGA-AN-A0XR TCGA-AN-A0XS TCGA-AN-A0XT TCGA-AN-A0XU 
       12.33         0.30         0.33         0.33         0.33         0.33 
TCGA-AN-A0XV TCGA-AN-A0XW TCGA-AO-A03L TCGA-AO-A03M TCGA-AO-A03N TCGA-AO-A03O 
        5.33         5.59        80.28        61.35        66.77        81.63 
TCGA-AO-A03P TCGA-AO-A03R TCGA-AO-A03T TCGA-AO-A03U TCGA-AO-A03V TCGA-AO-A0J2 
       95.70        68.75        69.83        58.95        44.42        32.78 
TCGA-AO-A0J3 TCGA-AO-A0J4 TCGA-AO-A0J5 TCGA-AO-A0J6 TCGA-AO-A0J7 TCGA-AO-A0J8 
       21.40        52.18        26.04        37.48        20.32        22.36 
TCGA-AO-A0J9 TCGA-AO-A0JA TCGA-AO-A0JB TCGA-AO-A0JC TCGA-AO-A0JD TCGA-AO-A0JE 
       53.03        21.53        50.70        50.86        72.00        76.77 
TCGA-AO-A0JF TCGA-AO-A0JJ TCGA-AO-A0JL TCGA-AO-A0JM TCGA-AO-A124 TCGA-AO-A125 
       65.10        62.04        55.33        71.80       115.27       113.62 
TCGA-AO-A126 TCGA-AO-A129 TCGA-AO-A12A TCGA-AO-A12D TCGA-AO-A12E TCGA-AO-A12F 
      108.72       108.03       102.31        82.68        70.42        60.56 
TCGA-AO-A12G TCGA-AO-A12H TCGA-AO-A1KO TCGA-AO-A1KP TCGA-AO-A1KR TCGA-AO-A1KS 
       53.88        40.57        20.45        97.08        82.62        11.51 
TCGA-AQ-A04H TCGA-AQ-A04J TCGA-AQ-A04L TCGA-AQ-A1H2 TCGA-AQ-A1H3 TCGA-AR-A0TS 
       24.79        26.93       130.09        15.62        32.52        84.10 
TCGA-AR-A0TX TCGA-AR-A0TY TCGA-AR-A0U0 TCGA-AR-A0U1 TCGA-AR-A0U2 TCGA-AR-A0U3 
       64.83        55.86        65.36       133.22        83.87       134.14 
TCGA-AR-A1AH TCGA-AR-A1AI TCGA-AR-A1AJ TCGA-AR-A1AK TCGA-AR-A1AL TCGA-AR-A1AN 
      125.16       108.36       101.00       103.86        97.68        96.00 
TCGA-AR-A1AO TCGA-AR-A1AP TCGA-AR-A1AQ TCGA-AR-A1AS TCGA-AR-A1AT TCGA-AR-A1AU 
       86.07        93.90        99.32        37.81        41.82        94.29 
TCGA-AR-A1AV TCGA-AR-A1AW TCGA-AR-A1AX TCGA-AR-A1AY TCGA-AR-A24H TCGA-AR-A24K 
       61.28        86.53        86.43        33.73       160.90        50.89 
TCGA-AR-A24L TCGA-AR-A24M TCGA-AR-A24N TCGA-AR-A24O TCGA-AR-A24P TCGA-AR-A24Q 
       94.22       120.33        99.78       118.59         2.76       104.28 
TCGA-AR-A24R TCGA-AR-A24S TCGA-AR-A24T TCGA-AR-A24U TCGA-AR-A24V TCGA-AR-A24W 
      112.77        97.84       105.27       102.84       105.30        50.96 
TCGA-AR-A24X TCGA-AR-A24Z TCGA-AR-A250 TCGA-AR-A251 TCGA-AR-A252 TCGA-AR-A254 
       98.76        98.66        89.00        99.62        93.30        85.64 
TCGA-AR-A255 TCGA-AR-A256 TCGA-AR-A2LE TCGA-AR-A2LH TCGA-AR-A2LJ TCGA-AR-A2LK 
       71.05        93.83       166.42        20.25        86.53        54.21 
TCGA-AR-A2LM TCGA-AR-A2LN TCGA-AR-A2LO TCGA-AR-A2LQ TCGA-AR-A5QN TCGA-AR-A5QP 
       63.62        38.17        39.39        40.54        33.30        38.96 
TCGA-AR-A5QQ TCGA-B6-A0I1 TCGA-B6-A0I2 TCGA-B6-A0I5 TCGA-B6-A0I6 TCGA-B6-A0I9 
       10.59        77.62       143.38       281.29        32.58        11.90 
TCGA-B6-A0IA TCGA-B6-A0IB TCGA-B6-A0IC TCGA-B6-A0IE TCGA-B6-A0IG TCGA-B6-A0IH 
      275.87       129.57        50.70        65.52       146.50       112.37 
TCGA-B6-A0IJ TCGA-B6-A0IK TCGA-B6-A0IM TCGA-B6-A0IN TCGA-B6-A0IO TCGA-B6-A0IP 
      233.62        18.77       127.33        84.59       165.76       129.07 
TCGA-B6-A0IQ TCGA-B6-A0RE TCGA-B6-A0RG TCGA-B6-A0RH TCGA-B6-A0RI TCGA-B6-A0RN 
      140.88       255.68        68.45       212.25       234.28       263.28 
TCGA-B6-A0RO TCGA-B6-A0RP TCGA-B6-A0RQ TCGA-B6-A0RT TCGA-B6-A0RU TCGA-B6-A0RV 
      162.05       102.77       140.28        89.46       282.90       169.51 
TCGA-B6-A0WS TCGA-B6-A0WT TCGA-B6-A0WV TCGA-B6-A0WW TCGA-B6-A0WX TCGA-B6-A0WY 
       97.48       188.68        79.46        18.35        21.01       113.79 
TCGA-B6-A0WZ TCGA-B6-A0X0 TCGA-B6-A0X1 TCGA-B6-A0X4 TCGA-B6-A0X5 TCGA-B6-A0X7 
      206.86       129.70       245.10        28.27        68.94        58.55 
TCGA-B6-A1KC TCGA-B6-A1KF TCGA-B6-A1KI TCGA-B6-A1KN TCGA-B6-A2IU TCGA-B6-A3ZX 
       43.59       101.52        73.51       139.17       170.17        37.87 
TCGA-B6-A400 TCGA-B6-A401 TCGA-B6-A402 TCGA-B6-A408 TCGA-B6-A409 TCGA-B6-A40B 
        7.07        85.35        74.99        68.12        18.84       103.63 
TCGA-B6-A40C TCGA-BH-A0AU TCGA-BH-A0AV TCGA-BH-A0AW TCGA-BH-A0AY TCGA-BH-A0AZ 
       71.15        62.93        59.84        20.45        25.55        63.09 
TCGA-BH-A0B0 TCGA-BH-A0B1 TCGA-BH-A0B3 TCGA-BH-A0B4 TCGA-BH-A0B5 TCGA-BH-A0B7 
       81.44        37.74        39.55        39.16        70.22        84.13 
TCGA-BH-A0B8 TCGA-BH-A0B9 TCGA-BH-A0BA TCGA-BH-A0BC TCGA-BH-A0BD TCGA-BH-A0BF 
       51.58        51.68        37.22        32.02        18.21        43.53 
TCGA-BH-A0BG TCGA-BH-A0BJ TCGA-BH-A0BL TCGA-BH-A0BM TCGA-BH-A0BO TCGA-BH-A0BP 
       61.51        21.70        74.89        61.68        72.23        75.48 
TCGA-BH-A0BQ TCGA-BH-A0BR TCGA-BH-A0BS TCGA-BH-A0BT TCGA-BH-A0BV TCGA-BH-A0BW 
       74.14        76.60        85.87        77.75        49.94        77.95 
TCGA-BH-A0BZ TCGA-BH-A0C0 TCGA-BH-A0C1 TCGA-BH-A0C3 TCGA-BH-A0C7 TCGA-BH-A0DD 
       74.14        41.75        46.39        89.06        90.97        81.73 
TCGA-BH-A0DE TCGA-BH-A0DG TCGA-BH-A0DH TCGA-BH-A0DI TCGA-BH-A0DK TCGA-BH-A0DL 
       77.98        67.10        38.01        29.98        13.91        78.28 
TCGA-BH-A0DP TCGA-BH-A0DQ TCGA-BH-A0DS TCGA-BH-A0DT TCGA-BH-A0DV TCGA-BH-A0DX 
       15.65         3.22         2.56        79.00        67.86        70.88 
TCGA-BH-A0DZ TCGA-BH-A0E0 TCGA-BH-A0E1 TCGA-BH-A0E2 TCGA-BH-A0E6 TCGA-BH-A0E7 
       16.27         4.41        15.68        14.30         9.63        44.81 
TCGA-BH-A0E9 TCGA-BH-A0EB TCGA-BH-A0EE TCGA-BH-A0EI TCGA-BH-A0GY TCGA-BH-A0GZ 
       81.83        24.49        31.00        63.32        30.35        10.78 
TCGA-BH-A0H0 TCGA-BH-A0H3 TCGA-BH-A0H5 TCGA-BH-A0H6 TCGA-BH-A0H7 TCGA-BH-A0H9 
       15.16        63.39        53.26        24.56        23.08        41.00 
TCGA-BH-A0HA TCGA-BH-A0HB TCGA-BH-A0HF TCGA-BH-A0HI TCGA-BH-A0HK TCGA-BH-A0HL 
       52.96        26.50        23.90        20.38         5.85         2.37 
TCGA-BH-A0HN TCGA-BH-A0HO TCGA-BH-A0HP TCGA-BH-A0HQ TCGA-BH-A0HU TCGA-BH-A0HW 
       16.96         2.50        13.61        36.85        12.89        51.32 
TCGA-BH-A0HX TCGA-BH-A0HY TCGA-BH-A0RX TCGA-BH-A0W3 TCGA-BH-A0W4 TCGA-BH-A0W5 
       27.25        50.79         5.59        23.93        24.95        42.35 
TCGA-BH-A0W7 TCGA-BH-A0WA TCGA-BH-A18F TCGA-BH-A18G TCGA-BH-A18I TCGA-BH-A18J 
       44.81        23.05        32.91         4.90        35.93        20.12 
TCGA-BH-A18K TCGA-BH-A18L TCGA-BH-A18M TCGA-BH-A18N TCGA-BH-A18P TCGA-BH-A18Q 
       90.84        26.66        72.56        37.74        30.28        55.63 
TCGA-BH-A18R TCGA-BH-A18S TCGA-BH-A18T TCGA-BH-A18U TCGA-BH-A18V TCGA-BH-A1EN 
       37.55        66.05         7.36        51.39        51.16        69.93 
TCGA-BH-A1EO TCGA-BH-A1ES TCGA-BH-A1ET TCGA-BH-A1EU TCGA-BH-A1EV TCGA-BH-A1EW 
       91.99       113.82        82.85        42.28        12.00        55.69 
TCGA-BH-A1EX TCGA-BH-A1EY TCGA-BH-A1F0 TCGA-BH-A1F2 TCGA-BH-A1F6 TCGA-BH-A1F8 
       49.58        17.69        25.81        31.53        97.48        25.08 
TCGA-BH-A1FC TCGA-BH-A1FD TCGA-BH-A1FE TCGA-BH-A1FG TCGA-BH-A1FH TCGA-BH-A1FJ 
      114.15        33.17        74.73       122.83        33.99        63.35 
TCGA-BH-A1FL TCGA-BH-A1FM TCGA-BH-A1FN TCGA-BH-A1FR TCGA-BH-A1FU TCGA-BH-A201 
       55.00        45.63        72.07        53.98        55.50        28.14 
TCGA-BH-A202 TCGA-BH-A203 TCGA-BH-A204 TCGA-BH-A208 TCGA-BH-A209 TCGA-BH-A28O 
       26.14        38.60        83.31        57.83       130.16        36.82 
TCGA-BH-A28Q TCGA-BH-A2L8 TCGA-BH-A42T TCGA-BH-A42U TCGA-BH-A42V TCGA-BH-A5IZ 
       36.79        20.12        10.52       110.60        20.88        18.64 
TCGA-BH-A5J0 TCGA-C8-A12L TCGA-C8-A12M TCGA-C8-A12N TCGA-C8-A12O TCGA-C8-A12P 
       23.51        11.93        11.77        11.77        12.66        11.77 
TCGA-C8-A12Q TCGA-C8-A12U TCGA-C8-A12V TCGA-C8-A12W TCGA-C8-A12X TCGA-C8-A12Y 
       12.66        12.66        12.66        12.66        12.66        48.53 
TCGA-C8-A12Z TCGA-C8-A130 TCGA-C8-A131 TCGA-C8-A132 TCGA-C8-A134 TCGA-C8-A135 
       12.56        12.16        13.51        12.59        12.59        12.92 
TCGA-C8-A137 TCGA-C8-A138 TCGA-C8-A1HE TCGA-C8-A1HF TCGA-C8-A1HG TCGA-C8-A1HI 
       12.46        12.49        12.33        10.92        11.34        11.28 
TCGA-C8-A1HJ TCGA-C8-A1HK TCGA-C8-A1HM TCGA-C8-A1HN TCGA-C8-A1HO TCGA-C8-A26V 
        0.16        12.03        12.33        12.95        12.33        20.25 
TCGA-C8-A26W TCGA-C8-A26X TCGA-C8-A26Y TCGA-C8-A26Z TCGA-C8-A273 TCGA-C8-A274 
       12.53        12.36        12.95        15.45        16.87        16.70 
TCGA-C8-A275 TCGA-C8-A278 TCGA-C8-A27A TCGA-C8-A27B TCGA-C8-A3M7 TCGA-C8-A3M8 
        0.03         9.76        24.56        14.43        33.99        12.95 
TCGA-D8-A13Y TCGA-D8-A13Z TCGA-D8-A140 TCGA-D8-A141 TCGA-D8-A142 TCGA-D8-A143 
       56.81        20.88        13.25        20.58        13.97        14.17 
TCGA-D8-A145 TCGA-D8-A147 TCGA-D8-A1J8 TCGA-D8-A1J9 TCGA-D8-A1JA TCGA-D8-A1JB 
       13.48        19.20        14.17        17.49        16.50        55.50 
TCGA-D8-A1JC TCGA-D8-A1JD TCGA-D8-A1JE TCGA-D8-A1JF TCGA-D8-A1JG TCGA-D8-A1JH 
       15.78        18.15        18.90        12.03        53.00        14.01 
TCGA-D8-A1JI TCGA-D8-A1JJ TCGA-D8-A1JK TCGA-D8-A1JL TCGA-D8-A1JM TCGA-D8-A1JN 
       18.97        20.09        20.12        20.09        19.40        20.38 
TCGA-D8-A1JP TCGA-D8-A1JS TCGA-D8-A1JT TCGA-D8-A1JU TCGA-D8-A1X5 TCGA-D8-A1X6 
       21.01        12.20        13.32        14.70        18.58        17.79 
TCGA-D8-A1X7 TCGA-D8-A1X8 TCGA-D8-A1X9 TCGA-D8-A1XA TCGA-D8-A1XB TCGA-D8-A1XC 
       16.73        25.74        23.90        27.58        18.15        12.39 
TCGA-D8-A1XF TCGA-D8-A1XG TCGA-D8-A1XJ TCGA-D8-A1XK TCGA-D8-A1XL TCGA-D8-A1XM 
       15.22        14.73        21.83        14.50        19.92        17.69 
TCGA-D8-A1XO TCGA-D8-A1XQ TCGA-D8-A1XR TCGA-D8-A1XS TCGA-D8-A1XT TCGA-D8-A1XU 
       55.30        16.41        15.85        16.31        16.64        12.99 
TCGA-D8-A1XV TCGA-D8-A1XY TCGA-D8-A1XZ TCGA-D8-A1Y0 TCGA-D8-A1Y1 TCGA-D8-A1Y2 
       15.16        16.54        15.32        15.52         9.93        14.24 
TCGA-D8-A1Y3 TCGA-D8-A27E TCGA-D8-A27F TCGA-D8-A27G TCGA-D8-A27H TCGA-D8-A27I 
       14.14        17.42        16.04        13.45        13.05        14.43 
TCGA-D8-A27K TCGA-D8-A27L TCGA-D8-A27M TCGA-D8-A27N TCGA-D8-A27P TCGA-D8-A27R 
       48.03        16.41        13.48        17.06         1.61        10.09 
TCGA-D8-A27T TCGA-D8-A27V TCGA-D8-A27W TCGA-D8-A3Z5 TCGA-D8-A3Z6 TCGA-D8-A4Z1 
       13.08        12.53        12.26        33.37        18.51        21.67 
TCGA-E2-A105 TCGA-E2-A107 TCGA-E2-A108 TCGA-E2-A109 TCGA-E2-A10A TCGA-E2-A10B 
       43.00        34.42        27.52        46.59        40.41        37.51 
TCGA-E2-A10C TCGA-E2-A10E TCGA-E2-A10F TCGA-E2-A14N TCGA-E2-A14O TCGA-E2-A14P 
       40.11        28.44        28.87        47.15        44.68        40.96 
TCGA-E2-A14Q TCGA-E2-A14R TCGA-E2-A14S TCGA-E2-A14T TCGA-E2-A14U TCGA-E2-A14V 
       38.24        38.60        33.17        75.98        43.33        34.26 
TCGA-E2-A14W TCGA-E2-A14X TCGA-E2-A14Y TCGA-E2-A14Z TCGA-E2-A150 TCGA-E2-A152 
       32.02        31.96        69.34        18.51        63.62        69.96 
TCGA-E2-A153 TCGA-E2-A154 TCGA-E2-A155 TCGA-E2-A156 TCGA-E2-A159 TCGA-E2-A15A 
       23.24        19.43        21.04        23.87        25.05        23.34 
TCGA-E2-A15C TCGA-E2-A15D TCGA-E2-A15E TCGA-E2-A15F TCGA-E2-A15G TCGA-E2-A15H 
       22.82        17.29        20.71        21.63        18.21        12.92 
TCGA-E2-A15I TCGA-E2-A15J TCGA-E2-A15L TCGA-E2-A15M TCGA-E2-A15P TCGA-E2-A15R 
       55.63        53.92        20.58        11.05        19.56        56.94 
TCGA-E2-A15S TCGA-E2-A15T TCGA-E2-A1AZ TCGA-E2-A1B0 TCGA-E2-A1B1 TCGA-E2-A1B4 
       14.07        51.39        76.57        53.62        87.22        33.01 
TCGA-E2-A1B5 TCGA-E2-A1B6 TCGA-E2-A1BD TCGA-E2-A1IE TCGA-E2-A1IF TCGA-E2-A1IG 
       32.35        28.50        37.25        77.65        37.41        70.36 
TCGA-E2-A1IH TCGA-E2-A1II TCGA-E2-A1IJ TCGA-E2-A1IK TCGA-E2-A1IL TCGA-E2-A1IN 
       33.73        33.70        28.44        59.18         3.88        22.19 
TCGA-E2-A1IO TCGA-E2-A1IU TCGA-E2-A1L6 TCGA-E2-A1L7 TCGA-E2-A1L9 TCGA-E2-A1LA 
       60.99        11.08        54.18        60.36        19.66        24.59 
TCGA-E2-A1LB TCGA-E2-A1LE TCGA-E2-A1LH TCGA-E2-A1LI TCGA-E2-A1LK TCGA-E2-A1LL 
       75.81        28.90       106.75       102.61         8.75        43.04 
TCGA-E2-A1LS TCGA-E2-A2P6 TCGA-E2-A3DX TCGA-E2-A56Z TCGA-E2-A570 TCGA-E2-A573 
       52.73        34.55        43.56         8.28        30.61        34.92 
TCGA-E2-A574 TCGA-E9-A1N3 TCGA-E9-A1N4 TCGA-E9-A1N5 TCGA-E9-A1N8 TCGA-E9-A1N9 
       38.76        34.82        32.88        36.82        34.16        36.20 
TCGA-E9-A1NA TCGA-E9-A1NC TCGA-E9-A1ND TCGA-E9-A1NE TCGA-E9-A1NF TCGA-E9-A1NG 
       36.56        39.55        41.62        35.77        35.24        25.84 
TCGA-E9-A1NH TCGA-E9-A1NI TCGA-E9-A1QZ TCGA-E9-A1R0 TCGA-E9-A1R2 TCGA-E9-A1R3 
       18.94         9.86        24.82        28.27        34.95         2.56 
TCGA-E9-A1R4 TCGA-E9-A1R5 TCGA-E9-A1R6 TCGA-E9-A1R7 TCGA-E9-A1RA TCGA-E9-A1RB 
        6.12         3.02        11.15        48.23        45.01        32.09 
TCGA-E9-A1RC TCGA-E9-A1RD TCGA-E9-A1RE TCGA-E9-A1RF TCGA-E9-A1RG TCGA-E9-A1RH 
       40.24         1.12        46.65         6.58        21.27        46.59 
TCGA-E9-A1RI TCGA-E9-A226 TCGA-E9-A227 TCGA-E9-A228 TCGA-E9-A229 TCGA-E9-A22A 
       47.64        34.45        32.05        42.25        37.74        39.09 
TCGA-E9-A22B TCGA-E9-A22D TCGA-E9-A22E TCGA-E9-A22G TCGA-E9-A22H TCGA-E9-A243 
       38.37        41.03        41.72        40.73        40.50        20.12 
TCGA-E9-A244 TCGA-E9-A247 TCGA-E9-A248 TCGA-E9-A249 TCGA-E9-A24A TCGA-E9-A295 
        0.69        38.99         1.94         7.13        24.56        12.33 
TCGA-E9-A2JS TCGA-E9-A2JT TCGA-E9-A3HO TCGA-E9-A3Q9 TCGA-E9-A3QA TCGA-E9-A3X8 
       29.72         9.47        38.07        32.91        30.18        30.44 
TCGA-E9-A54X TCGA-E9-A54Y TCGA-E9-A5FK TCGA-E9-A5FL TCGA-E9-A5UO TCGA-E9-A5UP 
       23.90        23.84        26.70         0.79        25.81        26.40 
TCGA-EW-A1IW TCGA-EW-A1IX TCGA-EW-A1IY TCGA-EW-A1IZ TCGA-EW-A1J1 TCGA-EW-A1J2 
       12.20        39.72         8.48        18.21        18.90        13.25 
TCGA-EW-A1J3 TCGA-EW-A1J6 TCGA-EW-A1OV TCGA-EW-A1OX TCGA-EW-A1OY TCGA-EW-A1OZ 
       16.57        28.77        25.94        29.95        29.85        40.41 
TCGA-EW-A1P0 TCGA-EW-A1P1 TCGA-EW-A1P4 TCGA-EW-A1P5 TCGA-EW-A1P6 TCGA-EW-A1P7 
       41.13        39.78        29.82        23.11        18.48        30.08 
TCGA-EW-A1P8 TCGA-EW-A1PA TCGA-EW-A1PB TCGA-EW-A1PC TCGA-EW-A1PD TCGA-EW-A1PE 
        7.86        18.90        19.99         6.15        13.94        10.52 
TCGA-EW-A1PG TCGA-EW-A1PH TCGA-EW-A2FR TCGA-EW-A2FS TCGA-EW-A2FV TCGA-EW-A2FW 
       34.55        19.96        55.00        52.73        25.91        22.09 
TCGA-EW-A3E8 TCGA-EW-A3U0 TCGA-EW-A423 TCGA-GI-A2C8 TCGA-GI-A2C9 TCGA-GM-A2D9 
       34.03        17.49        17.52         7.40       109.87        59.57 
TCGA-GM-A2DA TCGA-GM-A2DB TCGA-GM-A2DC TCGA-GM-A2DF TCGA-GM-A2DH TCGA-GM-A2DI 
      216.76        79.10        83.34        70.85        72.10        85.15 
TCGA-GM-A2DK TCGA-GM-A2DL TCGA-GM-A2DM TCGA-GM-A2DN TCGA-GM-A3NW TCGA-GM-A3NY 
       86.96       115.69       106.06       101.62       110.50        38.20 
TCGA-GM-A3XG TCGA-GM-A3XL TCGA-GM-A3XN TCGA-GM-A4E0 TCGA-GM-A5PV TCGA-GM-A5PX 
       43.73        69.30        66.38        72.03        13.55        18.12 
TCGA-HN-A2NL TCGA-HN-A2OB TCGA-JL-A3YW TCGA-JL-A3YX TCGA-LL-A441 TCGA-LL-A5YL 
        2.60        62.47        11.84        11.57        32.75        17.06 
TCGA-LL-A5YM TCGA-LL-A5YN TCGA-LL-A5YO TCGA-LQ-A4E4 TCGA-MS-A51U TCGA-OK-A5Q2 
       15.32        14.70        14.47        27.91        22.39         2.10 
TCGA-OL-A5D6 TCGA-OL-A5D7 TCGA-OL-A5D8 TCGA-OL-A5DA TCGA-OL-A5RV TCGA-OL-A5RW 
       36.30        58.52        31.99        58.62        34.92        36.36 
TCGA-OL-A5RX TCGA-OL-A5RY TCGA-OL-A5RZ TCGA-OL-A5S0 TCGA-OL-A66H TCGA-OL-A66I 
       28.87        24.72        22.32        20.38        26.70        23.47 
TCGA-OL-A66J TCGA-OL-A66K TCGA-PE-A5DC TCGA-PE-A5DD TCGA-PE-A5DE 
       65.62        41.92        47.01        64.21        86.96 

  OR8D1 MUTATED OR8D1 WILD-TYPE 
           9.04            0.03 
  OR8D1 MUTATED OR8D1 WILD-TYPE 
         106.78          282.90 
  OR8D1 MUTATED OR8D1 WILD-TYPE 
          43.04           30.61 
[1] "9.0 - 106.8 (43.0)" "0.0 - 282.9 (30.6)"
[1] "hr="     "3300000"
D79V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  OR8D1 MUTATED         0        0        0        0         4         1
  OR8D1 WILD-TYPE      88       71        6        4       322       226
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV STAGE X
  OR8D1 MUTATED           0          0          0          0        0       0
  OR8D1 WILD-TYPE         2        137         24         57       15      12
D79V3, multiclass
            clus
vv           OR8D1 MUTATED OR8D1 WILD-TYPE
  STAGE I                0              88
  STAGE IA               0              71
  STAGE IB               0               6
  STAGE II               0               4
  STAGE IIA              4             322
  STAGE IIB              1             226
  STAGE III              0               2
  STAGE IIIA             0             137
  STAGE IIIB             0              24
  STAGE IIIC             0              57
  STAGE IV               0              15
  STAGE X                0              12
[1] 12  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               T1  T2  T3  T4
  OR8D1 MUTATED     0   5   0   0
  OR8D1 WILD-TYPE 257 559 120  35
D79V4, multiclass
    clus
vv   OR8D1 MUTATED OR8D1 WILD-TYPE
  T1             0             257
  T2             5             559
  T3             0             120
  T4             0              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus               N0  N1  N2  N3
  OR8D1 MUTATED     4   1   0   0
  OR8D1 WILD-TYPE 458 324 107  68
D79V5, multiclass
    clus
vv   OR8D1 MUTATED OR8D1 WILD-TYPE
  N0             4             458
  N1             1             324
  N2             0             107
  N3             0              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D79V6, binary
                 cls
clus                0   1
  OR8D1 MUTATED     5   0
  OR8D1 WILD-TYPE 837  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8D1 MUTATED      5    0
  OR8D1 WILD-TYPE  837   16
   clus
vv  OR8D1 MUTATED OR8D1 WILD-TYPE
  0             5             837
  1             0              16
[1] 2 2
[1] FALSE
D79V7, binary
                 cls
clus                0   1
  OR8D1 MUTATED     5   0
  OR8D1 WILD-TYPE 963   9
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8D1 MUTATED      5    0
  OR8D1 WILD-TYPE  963    9
        clus
vv       OR8D1 MUTATED OR8D1 WILD-TYPE
  FEMALE             5             963
  MALE               0               9
[1] 2 2
[1] FALSE
D79V8, binary
                 cls
clus                0   1
  OR8D1 MUTATED     3   2
  OR8D1 WILD-TYPE 384 500
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8D1 MUTATED      3    2
  OR8D1 WILD-TYPE  384  500
     clus
vv    OR8D1 MUTATED OR8D1 WILD-TYPE
  NO              3             384
  YES             2             500
[1] 2 2
[1] FALSE
                 vv
clus              INFILTRATING CARCINOMA NOS INFILTRATING DUCTAL CARCINOMA
  OR8D1 MUTATED                            0                             5
  OR8D1 WILD-TYPE                          1                           706
                 vv
clus              INFILTRATING LOBULAR CARCINOMA MEDULLARY CARCINOMA
  OR8D1 MUTATED                                0                   0
  OR8D1 WILD-TYPE                            172                   5
                 vv
clus              METAPLASTIC CARCINOMA MIXED HISTOLOGY (PLEASE SPECIFY)
  OR8D1 MUTATED                       0                                0
  OR8D1 WILD-TYPE                     6                               27
                 vv
clus              MUCINOUS CARCINOMA OTHER, SPECIFY
  OR8D1 MUTATED                    0              0
  OR8D1 WILD-TYPE                 14             40
D79V9, multiclass
                                  clus
vv                                 OR8D1 MUTATED OR8D1 WILD-TYPE
  INFILTRATING CARCINOMA NOS                   0               1
  INFILTRATING DUCTAL CARCINOMA                5             706
  INFILTRATING LOBULAR CARCINOMA               0             172
  MEDULLARY CARCINOMA                          0               5
  METAPLASTIC CARCINOMA                        0               6
  MIXED HISTOLOGY (PLEASE SPECIFY)             0              27
  MUCINOUS CARCINOMA                           0              14
  OTHER, SPECIFY                               0              40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D79V10, continuous
                 vv
clus              AMERICAN INDIAN OR ALASKA NATIVE ASIAN
  OR8D1 MUTATED                                  0     0
  OR8D1 WILD-TYPE                                1    57
                 vv
clus              BLACK OR AFRICAN AMERICAN WHITE
  OR8D1 MUTATED                           0     4
  OR8D1 WILD-TYPE                       121   701
D79V11, multiclass
                                  clus
vv                                 OR8D1 MUTATED OR8D1 WILD-TYPE
  AMERICAN INDIAN OR ALASKA NATIVE             0               1
  ASIAN                                        0              57
  BLACK OR AFRICAN AMERICAN                    0             121
  WHITE                                        4             701
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D79V12, binary
                 cls
clus                0   1
  OR8D1 MUTATED     1   3
  OR8D1 WILD-TYPE  33 769
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8D1 MUTATED      1    3
  OR8D1 WILD-TYPE   33  769
                        clus
vv                       OR8D1 MUTATED OR8D1 WILD-TYPE
  HISPANIC OR LATINO                 1              33
  NOT HISPANIC OR LATINO             3             769
[1] 2 2
[1] FALSE
