[1] "started"
[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/analysis.results.RData"
[1] "APOBEC"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
                                  V1.D                                     V2 
                       "Time to Death"                       "YEARS_TO_BIRTH" 
                                    V3                                     V4 
                   "PATHOLOGY_T_STAGE"                    "PATHOLOGY_N_STAGE" 
                                    V5                                     V6 
                   "PATHOLOGY_M_STAGE"                    "RADIATION_THERAPY" 
                                    V7                                     V8 
                   "HISTOLOGICAL_TYPE"             "NUMBER_PACK_YEARS_SMOKED" 
                                    V9                                    V10 
               "NUMBER_OF_LYMPH_NODES"                                 "RACE" 
                                   V11                                    V12 
                           "ETHNICITY"               "WEIGHT_KG_AT_DIAGNOSIS" 
                                   V13                                    V14 
                        "TUMOR_STATUS"            "NEOPLASM_HISTOLOGIC_GRADE" 
                                   V15                                    V16 
        "TOBACCO_SMOKING_YEAR_STOPPED"    "TOBACCO_SMOKING_PACK_YEARS_SMOKED" 
                                   V17                                    V18 
             "TOBACCO_SMOKING_HISTORY"               "AGEBEGANSMOKINGINYEARS" 
                                   V19                                    V20 
            "RADIATION_THERAPY_STATUS"              "PREGNANCIES_COUNT_TOTAL" 
                                   V21                                    V22 
        "PREGNANCIES_COUNT_STILLBIRTH" "PREGNANCY_SPONTANEOUS_ABORTION_COUNT" 
                                   V23                                    V24 
        "PREGNANCIES_COUNT_LIVE_BIRTH" "PREGNANCY_THERAPEUTIC_ABORTION_COUNT" 
                                   V25                                    V26 
           "PREGNANCIES_COUNT_ECTOPIC"              "POS_LYMPH_NODE_LOCATION" 
                                   V27                                    V28 
                    "MENOPAUSE_STATUS"           "LYMPHOVASCULAR_INVOLVEMENT" 
                                   V29                                    V30 
       "LYMPH_NODES_EXAMINED_HE_COUNT"                 "LYMPH_NODES_EXAMINED" 
                                   V31                                    V32 
        "KERATINIZATION_SQUAMOUS_CELL"           "INITIAL_PATHOLOGIC_DX_YEAR" 
                                   V33                                    V34 
 "HISTORY_HORMONAL_CONTRACEPTIVES_USE"               "HEIGHT_CM_AT_DIAGNOSIS" 
                                   V35                                    V36 
                  "CORPUS_INVOLVEMENT"                "CHEMO_CONCURRENT_TYPE" 
                                   V37                                    V38 
                  "CERVIX_SUV_RESULTS"                     "AGE_AT_DIAGNOSIS" 
                                   V39 
                      "CLINICAL_STAGE" 
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V1.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V2.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V3.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V4.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V5.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V6.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V7.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V8.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V9.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V10.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V11.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V12.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V13.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V14.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V15.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V16.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V17.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V18.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V19.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V20.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V21.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V22.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V23.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V24.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V25.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V26.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V27.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V28.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V29.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V30.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V31.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V32.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V33.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V34.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V35.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V36.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V37.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V38.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D1V39.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V1.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V2.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V3.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V4.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V5.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V6.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V7.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V8.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V9.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V10.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V11.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V12.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V13.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V14.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V15.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V16.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V17.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V18.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V19.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V20.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V21.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V22.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V23.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V24.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V25.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V26.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V27.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V28.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V29.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V30.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V31.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V32.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V33.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V34.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V35.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V36.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V38.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/CESC-TP/22574682/D2V39.png"
[1] TRUE
