# Non-clustered (scattered) mutations all scattered mutation 
"Sample"	"A_T_coord_clusters"	"G_C_coord_clusters"	"Non_coord_clusters"	"clusters"	"mutations"	"complex"	"insertions"	"deletions"	"indels"	"substitutions"	"bases"	"A_to_T"	"A_to_G"	"A_to_C"	"A"	"a"	"T_to_A"	"T_to_C"	"T_to_G"	"T"	"t"	"G_to_C"	"G_to_T"	"G_to_A"	"G"	"g"	"C_to_G"	"C_to_A"	"C_to_T"	"C"	"c"	"tCw_to_G"	"tCw_to_A"	"tCw_to_T"	"tCw"	"tcw"	"tCw_per_mut"	"tCw_per_C"	"tcw_per_c"	"enrich_tCw"	"freq_tCw"	"wGa_to_C"	"wGa_to_T"	"wGa_to_A"	"wGa"	"wga"	"wGa_per_mut"	"wGa_per_G"	"wga_per_g"	"enrich_wGa"	"freq_wGa"	"[tCw_to_G+tCw_to_T]_per_mut"	"tCw_to_G+tCw_to_T"	"[(C_to_G)+(C_to_T)]-[(tCw_to_G)+(tCw_to_T)]"	"tcw+wga"	"c-tcw"	"Fisher_p-value_tCw"	"BH_Fisher_p-value_tCw"	"bonferroni_Fisher_p-value_tCw"	"odds_ratio_tCw"	"95%_confidence_lower_tCw"	"95%_confidence_upper_tCw"	"APOBEC_enrich"	"tCw_to_G_enrich"	"Fisher_p-value_tCw_to_G"	"BH_Fisher_p-value_tCw_to_G"	"bonferroni_Fisher_p-value_tCw_to_G"	"odds_ratio_tCw_to_G"	"tCw_to_T_enrich"	"Fisher_p-value_tCw_to_T"	"BH_Fisher_p-value_tCw_to_T"	"bonferroni_Fisher_p-value_tCw_to_T"	"odds_ratio_tCw_to_T"	"p-value_GvT_skew"	"BH_p-value_GvT_skew"	"bonferroni_p-value_GvT_skew"	"non-APOBEC_mutations"	"non-APOBEC_substitutions"	"APOBEC_MutLoad_MinEstimate"
"TCGA-FA-8693-01A-11D-2397-10"	0	0	0	0	162	4	4	7	11	147	6027	4	15	18	37	1513	4	23	10	37	1528	1	6	30	37	1468	5	3	28	36	1518	1	0	1	2	218	0.0123456790123457	0.0555555555555556	0.143610013175231	0.386850152905199	0.00917431192660551	0	2	2	4	219	0.0246913580246914	0.108108108108108	0.149182561307902	0.724669875354807	0.0182648401826484	0.0246913580246914	4	60	437	2549	0.98830277297552	1	1	0.388948440437534	0.128398606530254	Inf	0.427059496567506	1.13882532418002	0.613471135464799	1	1	1.16650423051746	0.353428548883453	0.993592034405478	1	1	0.318240223091304	0.545454545454546	0.844574780058652	1	158	143	0
"TCGA-FA-A4BB-01A-11D-A31X-10"	0	0	0	0	80	0	0	3	3	77	3157	0	7	2	9	710	2	4	3	9	734	1	5	27	33	882	1	5	20	26	831	0	1	0	1	90	0.0125	0.0384615384615385	0.108303249097473	0.355128205128205	0.0111111111111111	1	1	2	4	112	0.05	0.121212121212121	0.126984126984127	0.954545454545455	0.0357142857142857	0.0375	3	46	202	1511	0.937639603188831	1	1	0.487992921170192	0.127481109305503	Inf	0.519195797130733	4.24009900990099	0.222784749839259	0.565594230095412	1	7.46419110124488	0.36085949020434	0.97929949732202	1	1	0.332591944135495	1	1	1	77	74	0
"TCGA-FA-A4XK-01A-11D-A31X-10"	0	0	0	0	78	3	2	0	2	73	2993	3	6	1	10	655	1	6	3	10	708	0	11	15	26	837	2	2	23	27	793	0	0	0	0	95	0	0	0.119798234552333	0	0	0	4	0	4	101	0.0512820512820513	0.153846153846154	0.120669056152927	1.27494287890328	0.0396039603960396	0	0	40	196	1434	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	78	73	0
"TCGA-FA-A6HN-01A-11D-A31X-10"	0	0	0	0	187	2	2	8	10	175	7175	0	10	5	15	1650	4	12	2	18	1628	8	13	49	70	1932	8	13	51	72	1965	0	1	1	2	199	0.0106951871657754	0.0277777777777778	0.101272264631043	0.27428810720268	0.0100502512562814	3	2	4	9	212	0.0481283422459893	0.128571428571429	0.109730848861284	1.17169811320755	0.0424528301886792	0.0427807486631016	8	108	411	3486	0.929451543484259	1	1	0.628339567404724	0.303620282145343	Inf	0.653913918952932	1.77782846715328	0.235664262539755	0.565594230095412	1	1.95695544479502	0.474087591240876	0.983348356677918	1	1	0.446473967747389	0.659442724458204	0.930977963940994	1	179	167	0
"TCGA-FA-A6HO-01A-11D-A31X-10"	0	0	0	0	44	0	0	0	0	44	1804	0	4	0	4	399	1	2	0	3	372	3	4	11	18	518	0	1	18	19	515	0	0	0	0	56	0	0	0.10873786407767	0	0	2	2	1	5	56	0.113636363636364	0.277777777777778	0.108108108108108	2.56944444444444	0.0892857142857143	0.0681818181818182	3	29	112	921	0.690541253925503	1	1	0.850825717690236	0.216658009782965	Inf	0.864676339285714	6.14880952380952	0.0334390122549235	0.220312376180447	1	16.3554762887759	0.318041871921182	0.963444171498795	1	1	0.293901400293661	1	1	1	41	41	0
"TCGA-FA-A7DS-01A-11D-A382-10"	0	0	0	0	81	1	3	3	6	74	3034	2	2	3	7	665	3	6	4	13	705	0	7	24	31	802	2	7	14	23	862	0	2	0	2	110	0.0246913580246914	0.0869565217391304	0.127610208816705	0.681422924901186	0.0181818181818182	0	1	0	1	84	0.0123456790123457	0.032258064516129	0.104738154613466	0.307987711213518	0.0119047619047619	0	0	40	194	1470	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	81	74	0
"TCGA-FA-A7Q1-01A-11D-A382-10"	0	0	0	0	161	1	2	7	9	151	6191	3	6	8	17	1363	5	10	1	16	1412	6	7	44	57	1693	6	12	43	61	1723	3	2	4	9	218	0.0559006211180124	0.147540983606557	0.126523505513639	1.16611520529403	0.0412844036697248	0	0	1	1	159	0.0062111801242236	0.0175438596491228	0.0939161252215003	0.186803486704182	0.00628930817610063	0.0496894409937888	8	91	377	3039	0.864980894211361	1	1	0.708721547110689	0.340840146463118	Inf	0.732202663237146	2.26525198938992	0.139739263677935	0.515960358195452	1	2.68589238023788	0.520747583767798	0.968506777564608	1	1	0.491602069331353	0.649916646820672	0.930977963940994	1	153	143	0
"TCGA-FA-A82F-01A-11D-A382-10"	0	0	0	0	145	1	1	3	4	140	5740	3	7	6	16	1225	4	2	8	14	1312	3	12	43	58	1611	7	6	39	52	1592	2	2	0	4	174	0.0275862068965517	0.0769230769230769	0.10929648241206	0.703801945181256	0.0229885057471264	2	2	2	6	171	0.0413793103448276	0.103448275862069	0.106145251396648	0.97459165154265	0.0350877192982456	0.0413793103448276	6	86	345	2858	0.938354956771201	1	1	0.578036535985466	0.24383896191359	Inf	0.605482041587902	3.7136231884058	0.0168719681226706	0.202463617472047	0.809854469888189	5.51751221032331	0.226440438317427	0.998973519455384	1	1	0.207157087703303	0.628482972136223	0.930977963940994	1	139	134	0
"TCGA-FA-A86F-01A-11D-A382-10"	0	0	0	0	79	0	4	3	7	72	2952	2	5	2	9	739	1	10	2	13	728	2	6	19	27	739	3	8	12	23	746	0	3	1	4	98	0.0506329113924051	0.173913043478261	0.131367292225201	1.32386867790594	0.0408163265306122	0	1	0	1	104	0.0126582278481013	0.037037037037037	0.140730717185386	0.263176638176638	0.00961538461538462	0.0126582278481013	1	35	202	1283	0.994603357438108	1	1	0.181582821991552	0.00904233231948867	Inf	0.204207920792079	0	1	1	1	0	0.237144682210156	0.988943099794515	1	1	0.21184118124973	1	1	1	78	71	0
"TCGA-FF-8041-01A-11D-2210-10"	0	0	0	0	207	2	2	7	9	196	8036	6	9	5	20	1849	3	14	5	22	1841	6	13	59	78	2196	7	5	64	76	2150	0	0	7	7	270	0.0338164251207729	0.0921052631578947	0.125581395348837	0.733430799220273	0.0259259259259259	1	2	3	6	253	0.0289855072463768	0.0769230769230769	0.115209471766849	0.667680145941016	0.0237154150197628	0.0531400966183575	11	125	523	3823	0.943800929798596	1	1	0.643312999623058	0.350504489513432	Inf	0.672112248341019	0.639211648771878	0.811263246859958	1	1	0.609203794988527	0.675589547482473	0.934070784612008	1	1	0.646935285976807	0.000982635617175929	0.00589581370305557	0.0471665096244446	196	185	0
"TCGA-FF-8042-01A-11D-2210-10"	0	0	0	0	279	4	2	5	7	268	10988	3	17	19	39	2708	3	19	24	46	2634	13	19	51	83	2782	8	12	80	100	2864	2	4	4	10	384	0.03584229390681	0.1	0.134078212290503	0.745833333333333	0.0260416666666667	4	0	3	7	376	0.025089605734767	0.0843373493975904	0.135154565061107	0.624006664957703	0.0186170212765957	0.046594982078853	13	139	760	4886	0.975380552569537	1	1	0.601314086913312	0.346314959460261	Inf	0.635370498614958	2.12255639097744	0.0540672874052803	0.259522979545345	1	2.57089238890921	0.396966653274407	0.999193637858965	1	1	0.36296787576563	1	1	1	266	255	0
"TCGA-FF-8043-01A-11D-2210-10"	0	0	0	0	113	2	0	4	4	107	4387	1	10	2	13	985	1	7	3	11	976	2	5	29	36	1165	2	5	40	47	1261	0	1	4	5	140	0.0442477876106195	0.106382978723404	0.111022997620936	0.958206686930091	0.0357142857142857	0	0	1	1	124	0.00884955752212389	0.0277777777777778	0.106437768240343	0.260976702508961	0.00806451612903226	0.0442477876106195	5	68	264	2162	0.908281918225678	1	1	0.602263187559863	0.228639516250005	Inf	0.629410543794105	0	1	1	1	0	0.665898111550285	0.881240189588945	1	1	0.63989390148226	0.0151515151515152	0.0559440559440561	0.72727272727273	108	102	0
"TCGA-FF-8046-01A-11D-2210-10"	0	0	0	0	83	0	2	1	3	80	3280	2	7	1	10	799	4	10	3	17	802	4	6	17	27	792	4	4	18	26	887	0	1	1	2	111	0.0240963855421687	0.0769230769230769	0.125140924464487	0.614691614691615	0.018018018018018	1	1	2	4	95	0.0481927710843374	0.148148148148148	0.119949494949495	1.23508771929825	0.0421052631578947	0.0481927710843374	4	39	206	1473	0.789389863426116	1	1	0.733501627742759	0.23722259814418	Inf	0.758184691804019	1.01881067961165	0.64992453119013	1	1	1.02148748980743	0.698613037447989	0.819924203451674	1	1	0.670493762529992	0.545454545454546	0.844574780058652	1	79	76	0
"TCGA-FF-8047-01A-11D-2210-10"	0	0	0	0	139	1	2	0	2	136	5576	3	13	3	19	1294	4	11	1	16	1259	1	3	46	50	1537	4	10	37	51	1486	2	2	3	7	189	0.0503597122302158	0.137254901960784	0.127187079407806	1.07915758896151	0.037037037037037	0	0	4	4	182	0.0287769784172662	0.08	0.118412491867274	0.675604395604396	0.021978021978022	0.0647482014388489	9	79	371	2652	0.765657039654101	1	1	0.814407528451226	0.408082063317356	Inf	0.833343543249204	3.25929919137466	0.117558822167641	0.470235288670564	1	4.76162716916273	0.687201636735622	0.894900881628979	1	1	0.658468232930501	0.0804953560371517	0.203356688935962	1	130	127	0
"TCGA-FF-8061-01A-11D-2210-10"	0	0	0	0	165	0	1	5	6	159	6519	3	20	5	28	1502	3	13	9	25	1482	5	5	38	48	1779	4	5	49	58	1756	0	2	4	6	201	0.0363636363636364	0.103448275862069	0.114464692482916	0.903757076685538	0.0298507462686567	0	0	0	0	187	0	0	0.105115233277122	0	0	0.0242424242424242	4	92	388	3147	0.994705663959197	1	1	0.352712943410418	0.117526492764489	Inf	0.379617697594502	0	1	1	1	0	0.418888493897381	0.988683442081014	1	1	0.390954071716135	0.0606060606060606	0.171122994652406	1	161	155	0
"TCGA-FF-8062-01A-11D-2210-10"	0	0	0	0	149	1	4	6	10	138	5658	5	10	3	18	1296	5	12	6	23	1344	5	3	38	46	1500	6	9	36	51	1518	0	3	1	4	192	0.0268456375838926	0.0784313725490196	0.126482213438735	0.620098039215686	0.0208333333333333	2	0	2	4	176	0.0268456375838926	0.0869565217391304	0.117333333333333	0.741106719367589	0.0227272727272727	0.0335570469798658	5	80	368	2650	0.981771960271286	1	1	0.450153505918032	0.172000900913599	Inf	0.482416879795396	1.49110671936759	0.39642345823579	0.761133039812717	1	1.59993646246704	0.332476498237368	0.995561135222417	1	1	0.304346882231314	1	1	1	144	133	0
"TCGA-FF-A7CQ-01A-11D-A382-10"	0	0	0	0	117	3	4	3	7	107	4387	3	6	5	14	1033	4	6	3	13	1015	3	2	38	43	1197	4	6	27	37	1142	2	1	3	6	133	0.0512820512820513	0.162162162162162	0.11646234676007	1.39239991871571	0.0451127819548872	1	0	3	4	133	0.0341880341880342	0.0930232558139535	0.111111111111111	0.837209302325581	0.0300751879699248	0.0769230769230769	9	63	266	2073	0.438960532799181	1	1	1.11323427693254	0.551856733190136	Inf	1.09915413533835	3.76852846401719	0.0367187293634078	0.220312376180447	1	5.83718267530879	0.811683053788317	0.762069676517683	1	1	0.792602756060594	0.369849964277209	0.634028510189501	1	108	98	0
"TCGA-FF-A7CR-01A-11D-A382-10"	0	0	0	0	162	2	1	5	6	154	6314	5	12	8	25	1453	2	9	3	14	1450	6	13	42	61	1689	5	4	45	54	1722	0	1	2	3	214	0.0185185185185185	0.0555555555555556	0.124274099883856	0.447040498442368	0.014018691588785	2	3	1	6	196	0.037037037037037	0.0983606557377049	0.116044997039668	0.847607895617263	0.0306122448979592	0.0308641975308642	5	93	410	3001	0.99338151839512	1	1	0.393595889365051	0.150974351393596	Inf	0.424464907914385	1.51263858093126	0.389081987582844	0.761133039812717	1	1.62627270737433	0.286879730866274	0.998704382874637	1	1	0.261472549337362	1	1	1	157	149	0
"TCGA-FF-A7CW-01A-11D-A382-10"	0	0	0	0	48	0	1	2	3	45	1845	3	1	1	5	389	0	4	1	5	453	1	3	12	16	498	1	3	15	19	505	0	1	1	2	67	0.0416666666666667	0.105263157894737	0.132673267326733	0.793401413982718	0.0298507462686567	0	0	0	0	71	0	0	0.142570281124498	0	0	0.0208333333333333	1	28	138	865	0.985847061144594	1	1	0.224053382916989	0.0110475650078067	Inf	0.250624687656172	0	1	1	1	0	0.269189479334407	0.981095348326244	1	1	0.241283095405011	1	1	1	47	44	0
"TCGA-FF-A7CX-01A-12D-A382-10"	0	0	0	0	121	1	1	4	5	115	4715	3	2	0	5	1053	5	8	3	16	1002	3	8	34	45	1342	2	5	42	49	1318	0	2	4	6	140	0.0495867768595041	0.122448979591837	0.106221547799697	1.15276967930029	0.0428571428571429	0	1	2	3	154	0.0247933884297521	0.0666666666666667	0.114754098360656	0.580952380952381	0.0194805194805195	0.0495867768595041	6	75	294	2366	0.893460310176269	1	1	0.643898001480556	0.270355410020122	Inf	0.670194003527337	0	1	1	1	0	0.714285714285714	0.856374510473584	1	1	0.689877941016654	0.0090497737556561	0.0361990950226244	0.434389140271493	115	109	0
"TCGA-FM-8000-01A-11D-2210-10"	0	0	0	0	155	3	1	6	7	145	5945	5	13	3	21	1406	5	12	9	26	1490	2	4	39	45	1517	6	7	40	53	1532	0	3	3	6	232	0.0387096774193548	0.113207547169811	0.151436031331593	0.747560182173064	0.0258620689655172	0	0	2	2	206	0.0129032258064516	0.0444444444444444	0.135794330916282	0.327292340884574	0.00970873786407767	0.032258064516129	5	82	438	2611	0.996444442665697	1	1	0.363568073187414	0.139114980303334	Inf	0.40006823072482	0	1	1	1	0	0.440581469279232	0.991596615175007	1	1	0.40286643433217	0.0256410256410257	0.0820512820512822	1	150	140	0
"TCGA-G8-6324-01A-11D-2210-10"	0	0	0	0	4388	42	21	53	74	4272	175152	66	458	97	621	40163	74	480	80	634	39826	191	173	1213	1577	47757	183	135	1122	1440	47406	22	9	68	99	5708	0.0225615314494075	0.06875	0.120406699573894	0.570981517168886	0.017344078486335	30	10	66	106	5781	0.0241567912488605	0.0672162333544705	0.121050317230982	0.555275152449308	0.0183359280401315	0.0423883318140383	186	2523	11489	83674	1	1	1	0.536916984877199	0.471219575924461	Inf	0.568708650683927	1.15164237543188	0.157400470725751	0.53294651552455	1	1.17612163287666	0.475339394557274	1	1	1	0.443399151800295	3.64652396226509e-16	1.75033150188724e-14	1.75033150188724e-14	4202	4086	0
"TCGA-G8-6325-01A-11D-2210-10"	0	0	0	0	757	8	4	12	16	733	30053	11	61	25	97	6848	6	71	13	90	6960	25	29	217	271	7989	39	32	204	275	8256	6	3	23	32	1040	0.0422721268163804	0.116363636363636	0.125968992248062	0.923748251748252	0.0307692307692308	4	2	16	22	973	0.0290620871862616	0.0811808118081181	0.121792464638878	0.666550365400879	0.0226104830421377	0.0647291941875826	49	436	2013	14232	0.946157901224996	1	1	0.794579614688505	0.607419105957762	Inf	0.815324104659917	1.26094448584203	0.266378753044066	0.581190006641598	1	1.30924135941162	0.747581338874513	0.980575999505312	1	1	0.721823954539826	2.87315542245331e-08	6.89557301388794e-07	1.37911460277759e-06	708	684	0
"TCGA-G8-6326-01A-11D-2210-10"	0	0	0	0	676	4	3	10	13	659	27019	8	79	13	100	6212	12	68	12	92	6144	27	27	156	210	7174	24	21	212	257	7489	5	1	17	23	945	0.0340236686390533	0.0894941634241245	0.126185071438109	0.709229407283882	0.0243386243386243	1	4	5	10	848	0.014792899408284	0.0476190476190476	0.118204627822693	0.40285265049416	0.0117924528301887	0.0414201183431953	28	391	1793	12870	0.999920235512071	1	1	0.514038524293829	0.360188190139876	Inf	0.54649545368025	0.962107542403464	0.604185148079358	1	1	0.957054738561729	0.488897039210456	0.99997429891688	1	1	0.456416019074955	0.000139430049441567	0.00111544039553254	0.00669264237319522	648	631	0
"TCGA-G8-6906-01A-11D-2210-10"	0	0	0	0	833	11	6	12	18	804	32964	13	67	25	105	7505	17	71	14	102	7330	31	41	249	321	9174	30	38	208	276	8955	2	5	15	22	999	0.0264105642256903	0.0797101449275362	0.111557788944724	0.71451886669278	0.022022022022022	7	2	13	22	1066	0.0264105642256903	0.0685358255451713	0.116197950730325	0.589819571811822	0.0206378986866792	0.0444177671068427	37	481	2065	16064	0.999449476940453	1	1	0.59841262766469	0.44039875732596	Inf	0.627084053960567	1.29528837375461	0.256217852793253	0.581190006641598	1	1.34636754351386	0.537892667729852	0.999946281934096	1	1	0.507747072207215	7.84908138831247e-05	0.000941889766597496	0.00376755906638999	796	767	0
"TCGA-G8-6907-01A-11D-2210-10"	0	0	0	0	668	11	3	15	18	639	26199	8	71	14	93	5924	16	46	19	81	6088	21	22	168	211	7080	34	20	200	254	7107	7	1	14	22	867	0.0329341317365269	0.0866141732283465	0.121992401857324	0.7099964580552	0.0253748558246828	5	3	5	13	809	0.0194610778443114	0.0616113744075829	0.114265536723164	0.539194722874768	0.0160692212608158	0.0464071856287425	31	392	1676	12511	0.998950672763972	1	1	0.590346886500115	0.421012248582881	Inf	0.620351563161191	1.84686482968106	0.0253341655287716	0.220312376180447	1	2.08307346949758	0.437041156480232	0.999995234739515	1	1	0.406410327660759	0.148308867110328	0.32358298278617	1	637	608	0
"TCGA-G8-6909-01A-11D-2210-10"	0	0	0	0	1024	10	4	25	29	985	40385	27	91	26	144	9388	22	90	27	139	9338	46	30	270	346	10731	50	48	258	356	10928	11	8	13	32	1350	0.03125	0.0898876404494382	0.123535871156662	0.72762380357886	0.0237037037037037	4	5	20	29	1266	0.0283203125	0.0838150289017341	0.11797595750629	0.710441607539106	0.0229067930489731	0.046875	48	576	2616	19043	0.999829870284323	1	1	0.606631856487914	0.464308740749963	Inf	0.636879557751117	1.29366160168196	0.180081222237192	0.540243666711576	1	1.34801933322107	0.517464640672783	0.9999965443527	1	1	0.485308861435481	0.00150203496521536	0.00720976783303373	0.0720976783303373	976	937	0
"TCGA-G8-6914-01A-11D-2210-10"	0	0	0	0	712	6	8	9	17	689	28249	9	59	13	81	6328	15	66	14	95	6365	22	28	218	268	7821	24	27	194	245	7735	4	5	11	20	856	0.0280898876404494	0.0816326530612245	0.110665804783452	0.737650200267023	0.0233644859813084	6	4	15	25	943	0.0351123595505618	0.0932835820895522	0.120572816775348	0.773670090691822	0.0265111346765642	0.050561797752809	36	422	1799	13757	0.995892527687219	1	1	0.652368505988689	0.477184285510097	Inf	0.6796789094378	1.87978828817942	0.0352383547496842	0.220312376180447	1	2.12404482411785	0.54568611472393	0.999866164170804	1	1	0.515102358541889	0.00110621026294719	0.00589978806905168	0.0530980926214651	676	653	0
"TCGA-GR-7351-01A-11D-2210-10"	0	0	0	0	871	10	8	20	28	833	34153	16	66	45	127	7857	19	64	44	127	8042	33	26	230	289	9018	36	33	221	290	9236	7	6	12	25	1219	0.0287026406429392	0.0862068965517241	0.13198354265916	0.653163984045713	0.0205086136177194	5	2	15	22	1115	0.0252583237657865	0.0761245674740484	0.123641605677534	0.615687308951542	0.0197309417040359	0.0447761194029851	39	481	2334	15920	0.99994900320869	1	1	0.553062197735416	0.410350485082507	Inf	0.586568123393316	1.36015796728885	0.166545786101422	0.53294651552455	1	1.43594331943651	0.468214023107747	0.999999140606387	1	1	0.434363484122177	0.00314135147870856	0.0137077155434555	0.150784870978011	832	794	0
"TCGA-GR-7353-01A-11D-2210-10"	0	0	0	0	699	5	5	8	13	681	27921	12	67	20	99	6484	15	70	17	102	6313	29	31	178	238	7456	17	27	198	242	7668	3	2	8	13	917	0.0185979971387697	0.0537190082644628	0.119587897756912	0.449201041845039	0.0141766630316249	7	4	12	23	946	0.0329041487839771	0.0966386554621849	0.126877682403433	0.761667880682929	0.0243128964059197	0.0429184549356223	30	392	1863	13261	0.999790744962039	1	1	0.544770039610949	0.386482992179739	Inf	0.577115339118224	1.76480197904268	0.0509201353401549	0.259522979545345	1	1.97719677922911	0.431813250191295	0.999998128481093	1	1	0.399908783514073	0.0306570499337096	0.0919711498011288	1	669	651	0
"TCGA-GR-A4D4-01A-11D-A31X-10"	0	0	0	0	90	2	2	2	4	84	3444	5	4	5	14	801	8	6	6	20	818	8	7	12	27	918	5	3	15	23	907	2	1	1	4	112	0.0444444444444444	0.173913043478261	0.12348401323043	1.4083850931677	0.0357142857142857	4	5	0	9	122	0.1	0.333333333333333	0.132897603485839	2.50819672131148	0.0737704918032787	0.0777777777777778	7	33	234	1591	0.252021611722235	1	1	1.44191693724356	0.62593836340698	Inf	1.36485042735043	3.59960552268245	0.00359642447922761	0.0575427916676418	0.172628375002925	5.81848770048987	0.288857233301678	0.975066797694997	1	1	0.261621705183177	0.0730434782608697	0.194782608695653	1	83	77	0
"TCGA-GR-A4D5-01A-11D-A31X-10"	0	0	0	0	62	0	0	0	0	62	2542	0	5	1	6	526	0	3	2	5	620	4	4	18	26	686	5	2	18	25	710	1	1	1	3	101	0.0483870967741935	0.12	0.142253521126761	0.843564356435644	0.0297029702970297	0	1	0	1	65	0.0161290322580645	0.0384615384615385	0.0947521865889213	0.405917159763314	0.0153846153846154	0.032258064516129	2	43	166	1230	0.97536661600824	1	1	0.344806990828865	0.0589171002331977	Inf	0.37376171352075	0.934404283801874	0.680926084726474	1	1	0.926245188783581	0.233601070950469	0.989144914878466	1	1	0.211834892006669	1	1	1	60	60	0
"TCGA-GR-A4D6-01A-11D-A31X-10"	0	0	0	0	40	1	0	1	1	38	1558	1	3	2	6	357	0	2	3	5	344	2	2	12	16	418	1	1	9	11	439	0	0	2	2	55	0.05	0.181818181818182	0.125284738041002	1.45123966942149	0.0363636363636364	0	0	0	0	44	0	0	0.105263157894737	0	0	0.05	2	22	99	758	0.783050774414043	1	1	0.696302535107901	0.115096178347674	Inf	0.721380471380471	0	1	1	1	0	0.824434824434824	0.717042621654988	1	1	0.806141541716475	0.333333333333333	0.592592592592592	1	38	36	0
"TCGA-GR-A4D9-01B-11D-A31X-10"	0	0	0	0	67	1	1	4	5	61	2501	0	1	4	5	531	1	5	2	8	602	0	10	15	25	712	1	5	17	23	656	0	1	1	2	84	0.0298507462686567	0.0869565217391304	0.128048780487805	0.679089026915114	0.0238095238095238	0	1	2	3	70	0.0447761194029851	0.12	0.098314606741573	1.22057142857143	0.0428571428571429	0.0447761194029851	3	30	154	1214	0.734579347095956	1	1	0.788434510456349	0.201920541105852	Inf	0.807556080283353	0	1	1	1	0	0.832792207792208	0.715158630280387	1	1	0.815617712245121	0.166666666666667	0.347826086956522	1	64	58	0
"TCGA-GS-A9TQ-01A-11D-A382-10"	0	0	0	0	90	1	5	2	7	82	3362	3	3	4	10	786	3	9	2	14	809	4	4	12	20	876	4	6	28	38	891	1	0	1	2	101	0.0222222222222222	0.0526315789473684	0.113355780022447	0.464304325169359	0.0198019801980198	0	1	2	3	104	0.0333333333333333	0.15	0.118721461187215	1.26346153846154	0.0288461538461538	0.0444444444444444	4	44	205	1562	0.822087838973362	1	1	0.692805895108544	0.225176106491519	Inf	0.718292682926829	1.07743902439024	0.628041483337607	1	1	1.08848040580548	0.646463414634146	0.857253180152897	1	1	0.617936671260438	0.523809523809524	0.844574780058652	1	86	78	0
"TCGA-GS-A9TT-01A-11D-A382-10"	0	0	0	0	158	5	1	5	6	147	6027	1	13	7	21	1373	6	11	4	21	1386	2	14	37	53	1581	7	11	34	52	1687	0	4	0	4	194	0.0253164556962025	0.0769230769230769	0.114997036158862	0.668913560666138	0.0206185567010309	0	2	0	2	181	0.0126582278481013	0.0377358490566038	0.114484503478811	0.329615344522047	0.0110497237569061	0	0	80	375	2893	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	158	147	0
"TCGA-GS-A9TU-01A-11D-A382-10"	0	0	0	0	57	0	3	1	4	53	2173	2	4	2	8	466	2	4	2	8	553	2	1	13	16	568	1	3	17	21	586	0	2	3	5	87	0.087719298245614	0.238095238095238	0.148464163822526	1.60372194854953	0.0574712643678161	0	0	2	2	67	0.0350877192982456	0.125	0.117957746478873	1.05970149253731	0.0298507462686567	0.087719298245614	5	28	154	1000	0.459237334487727	1	1	1.15937761568165	0.420750201903431	Inf	1.13537977174341	0	1	1	1	0	1.24891774891775	0.376561819980761	1	1	1.29838636992998	0.020979020979021	0.071928071928072	1	52	48	0
"TCGA-GS-A9TV-01A-11D-A382-10"	0	0	0	0	65	0	0	1	1	64	2624	2	5	3	10	650	3	10	8	21	686	3	2	13	18	623	3	1	11	15	665	0	0	2	2	103	0.0307692307692308	0.133333333333333	0.154887218045113	0.86084142394822	0.0194174757281553	0	0	1	1	90	0.0153846153846154	0.0555555555555556	0.14446227929374	0.384567901234568	0.0111111111111111	0.0461538461538462	3	27	193	1095	0.847236676056964	1	1	0.630587723982873	0.160908731970452	Inf	0.667357512953368	0	1	1	1	0	0.83419689119171	0.719921196149565	1	1	0.810631988105779	0.1	0.234432234432235	1	62	61	0
"TCGA-GS-A9TW-01A-11D-A382-10"	0	0	0	0	236	6	2	9	11	219	8979	9	13	8	30	2296	2	12	7	21	2184	21	5	59	85	2206	13	17	53	83	2293	5	4	11	20	347	0.0847457627118644	0.240963855421687	0.151330135194069	1.59230582271449	0.0576368876080692	8	1	19	28	324	0.11864406779661	0.329411764705882	0.14687216681777	2.24284676833696	0.0864197530864197	0.182203389830508	43	103	671	3828	8.57520707858433e-06	0.000205804969886024	0.000411609939772048	2.38102703156657	1.71467167365857	Inf	1.97473613294408	2.56364513018322	0.000804967967202997	0.0193192312128719	0.0386384624257439	3.53021331300685	1.79596018735363	0.000962515760469056	0.0231003782512573	0.0462007565025147	2.08677096784523	0.000919318394290013	0.00589581370305557	0.0441272829259206	193	176	21
"TCGA-GS-A9TX-01A-11D-A382-10"	0	0	0	0	23	1	1	3	4	18	738	0	2	2	4	188	0	1	0	1	190	1	2	8	11	204	0	0	2	2	156	0	0	1	1	20	0.0434782608695652	0.5	0.128205128205128	3.9	0.05	0	0	0	0	27	0	0	0.132352941176471	0	0	0.0434782608695652	1	10	47	313	0.787015264798127	1	1	0.666590610593625	0.03052136386508	Inf	0.696324951644101	0	1	1	1	0	0.765957446808511	0.755364282477106	1	1	0.74049472745253	1	1	1	22	17	0
"TCGA-GS-A9TY-01A-11D-A38X-10"	0	0	0	0	132	0	2	8	10	122	5002	5	5	3	13	1123	2	5	4	11	1207	4	10	37	51	1317	7	6	34	47	1355	1	0	1	2	165	0.0151515151515152	0.0425531914893617	0.121771217712177	0.349451966473243	0.0121212121212121	1	2	2	5	176	0.0378787878787879	0.0980392156862745	0.133637053910402	0.733622994652406	0.0284090909090909	0.0378787878787879	5	77	341	2331	0.9831876060781	1	1	0.443978158170894	0.169394438531725	Inf	0.477791288176811	1.42468675019995	0.420002885368164	0.775389942218149	1	1.5187798032124	0.331089174342241	0.995763486044482	1	1	0.301663648437743	1	1	1	127	117	0
"TCGA-GS-A9TZ-01A-11D-A38X-10"	0	0	0	0	377	3	3	10	13	361	14801	14	14	10	38	3442	10	21	9	40	3577	16	20	112	148	3903	23	15	97	135	3879	12	4	21	37	563	0.0981432360742706	0.274074074074074	0.145140500128899	1.88833629366489	0.0657193605683837	9	8	31	48	483	0.127320954907162	0.324324324324324	0.123750960799385	2.62078227295619	0.0993788819875776	0.193633952254642	73	175	1046	6736	9.79614540892208e-11	4.7021497962826e-09	4.7021497962826e-09	2.68587073962304	2.09500688986531	Inf	2.18993246160488	4.00603029857332	3.05284493635564e-09	1.46536556945071e-07	1.46536556945071e-07	7.50974053944017	1.85104339154857	9.24315659154487e-06	0.000443671516394154	0.000443671516394154	2.13266757883488	2.57654446828659e-06	4.12247114925854e-05	0.000123674134477756	304	288	40
"TCGA-GS-A9U3-01A-11D-A38X-10"	0	0	0	0	78	1	2	2	4	73	2993	2	3	0	5	705	3	6	1	10	713	2	4	29	35	766	0	4	19	23	809	0	1	1	2	102	0.0256410256410256	0.0869565217391304	0.126081582200247	0.689684569479966	0.0196078431372549	1	0	4	5	93	0.0641025641025641	0.142857142857143	0.121409921671018	1.17665130568356	0.0537634408602151	0.0769230769230769	6	44	195	1380	0.598510321527158	1	1	0.965052564913804	0.395781694613116	Inf	0.969230769230769	4.03846153846154	0.233195136946396	0.565594230095412	1	7.06134705736856	0.841346153846154	0.724620388076075	1	1	0.822990437800895	0.102564102564103	0.234432234432235	1	72	67	0
"TCGA-GS-A9U4-01A-11D-A38X-10"	0	0	0	0	24	1	0	0	0	23	943	1	0	1	2	223	0	0	0	0	213	1	0	12	13	279	3	0	5	8	228	2	0	0	2	31	0.0833333333333333	0.25	0.135964912280702	1.83870967741935	0.0645161290322581	0	0	0	0	36	0	0	0.129032258064516	0	0	0.0833333333333333	2	19	67	440	0.786410755629655	1	1	0.691707300976545	0.112555169378023	Inf	0.720682302771855	3.78358208955224	0.0899882367625434	0.392675942236553	1	6.52644770866336	0	1	1	1	0	0.333333333333333	0.592592592592592	1	22	21	0
"TCGA-RQ-A68N-01A-11D-A31X-10"	0	0	0	0	190	0	0	4	4	186	7626	5	12	4	21	1791	4	11	6	21	1731	2	13	55	70	2076	10	11	53	74	2028	0	3	7	10	231	0.0526315789473684	0.135135135135135	0.113905325443787	1.18638118638119	0.0432900432900433	0	4	4	8	263	0.0421052631578947	0.114285714285714	0.126685934489403	0.902118413905486	0.0304182509505703	0.0578947368421053	11	109	494	3610	0.866049134013025	1	1	0.737521625308506	0.400380697438138	Inf	0.761538461538461	0	1	1	1	0	0.846153846153846	0.763582880066563	1	1	0.828749342637714	0.000105937814502887	0.00101700301922772	0.00508501509613858	179	175	0
"TCGA-RQ-A6JB-01A-11D-A31X-10"	0	0	0	0	74	3	2	2	4	67	2747	3	4	3	10	602	3	6	4	13	665	2	3	19	24	717	4	3	13	20	763	0	0	0	0	92	0	0	0.120576671035387	0	0	1	1	2	4	98	0.0540540540540541	0.166666666666667	0.136680613668061	1.21938775510204	0.0408163265306122	0.0405405405405405	3	35	190	1290	0.880873881995968	1	1	0.582127018093046	0.150426452213094	Inf	0.614958448753463	1.29824561403509	0.56262147198696	1	1	1.35757917927154	0.486842105263158	0.928783076630878	1	1	0.452808481280992	1	1	1	71	64	0
"TCGA-RQ-AAAT-01A-11D-A38X-10"	0	0	0	0	128	3	1	1	2	123	5043	2	9	3	14	1096	4	11	6	21	1250	5	3	31	39	1364	5	7	37	49	1333	1	0	3	4	174	0.03125	0.0816326530612245	0.13053263315829	0.625381186957542	0.0229885057471264	1	1	2	4	161	0.03125	0.102564102564103	0.118035190615836	0.868928173275999	0.0248447204968944	0.0546875	7	71	335	2362	0.864172815573324	1	1	0.695224654067052	0.313505617794271	Inf	0.722502870264064	1.61014925373134	0.359224098519789	0.749685075171734	1	1.762230156684	0.591966637401229	0.934570466335076	1	1	0.559679360093841	0.314685314685315	0.592592592592592	1	121	116	0
"TCGA-VB-A8QN-01A-11D-A382-10"	0	0	0	0	173	0	0	3	3	170	6970	3	10	3	16	1571	3	11	4	18	1637	8	10	51	69	1890	6	7	54	67	1872	3	2	4	9	208	0.0520231213872832	0.134328358208955	0.111111111111111	1.2089552238806	0.0432692307692308	0	1	3	4	230	0.023121387283237	0.0579710144927536	0.121693121693122	0.476370510396975	0.0173913043478261	0.0578034682080925	10	109	438	3324	0.895844766091799	1	1	0.696299817047777	0.365918222766193	Inf	0.721768159318522	1.84050880626223	0.21899297893364	0.565594230095412	1	2.06923550753434	0.572602739726027	0.966491572482547	1	1	0.542143872995501	0.226194642616772	0.452389285233544	1	163	160	0
"Totals"	0	0	0	0	15447	166	126	304	430	14851	608891	287	1311	443	2041	139922	314	1360	413	2087	140466	587	676	4149	5412	163780	622	615	4074	5311	164723	107	95	285	487	20202	0.0315271573768369	0.0916964790058369	0.122642253965749	0.747674443682728	0.0241065241065241	113	86	276	475	19752	0.030750307503075	0.0877679231337768	0.120600805959214	0.727755693137402	0.0240481976508708	0.0505599792840034	781	8651	39954	288549	1	NA	NA	0.651996195481109	0.612105591534181	Inf	0.680810611911077	1.49615109485089	9.92033651932045e-10	NA	NA	1.6065059121468	0.560933846269069	1	NA	NA	0.528788002088027	1.4529877015778e-57	NA	NA	14666	14070	NA
