Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-BA-4074-01A-01D-1431-02	TCGA-BA-4075-01A-01D-1431-02	TCGA-BA-4076-01A-01D-1431-02	TCGA-BA-4077-01B-01D-1431-02	TCGA-BA-4078-01A-01D-1431-02	TCGA-BA-5149-01A-01D-1509-02	TCGA-BA-5151-01A-01D-1431-02	TCGA-BA-5153-01A-01D-1431-02	TCGA-BA-5555-01A-01D-1509-02	TCGA-BA-5557-01A-01D-1509-02	TCGA-BA-5558-01A-01D-1509-02	TCGA-BA-5559-01A-01D-1509-02	TCGA-BB-4223-01A-01D-1431-02	TCGA-BB-4224-01A-01D-1431-02	TCGA-BB-4225-01A-01D-1431-02	TCGA-CN-4722-01A-01D-1431-02	TCGA-CN-4725-01A-01D-1431-02	TCGA-CN-4727-01A-01D-1431-02	TCGA-CN-4729-01A-01D-1431-02	TCGA-CN-4730-01A-01D-1431-02	TCGA-CN-4731-01A-01D-1431-02	TCGA-CN-4733-01A-02D-1868-02	TCGA-CN-4734-01A-01D-1431-02	TCGA-CN-4735-01A-01D-1431-02	TCGA-CN-4736-01A-01D-1431-02	TCGA-CN-4737-01A-01D-1431-02	TCGA-CN-4738-01A-02D-1509-02	TCGA-CN-4739-01A-02D-1509-02	TCGA-CN-4740-01A-01D-1431-02	TCGA-CN-4741-01A-01D-1431-02	TCGA-CN-4742-01A-02D-1509-02	TCGA-CN-5355-01A-01D-1431-02	TCGA-CN-5356-01A-01D-1431-02	TCGA-CN-5360-01A-01D-1431-02	TCGA-CN-5361-01A-01D-1431-02	TCGA-CN-5363-01A-01D-1431-02	TCGA-CN-5364-01A-01D-1431-02	TCGA-CN-5366-01A-01D-1431-02	TCGA-CN-5367-01A-01D-1431-02	TCGA-CN-5369-01A-01D-1431-02	TCGA-CN-5373-01A-01D-1431-02	TCGA-CN-6013-01A-11D-1681-02	TCGA-CN-6017-01A-11D-1681-02	TCGA-CN-6018-01A-11D-1681-02	TCGA-CN-6019-01A-11D-1681-02	TCGA-CN-6996-01A-11D-1911-02	TCGA-CN-6998-01A-23D-2317-26	TCGA-CQ-5325-01A-01D-1681-02	TCGA-CQ-5327-01A-01D-1681-02	TCGA-CQ-5329-01A-01D-1681-02	TCGA-CQ-5330-01A-01D-1681-02	TCGA-CQ-6219-01A-11D-1911-02	TCGA-CQ-6220-01A-11D-1911-02	TCGA-CQ-6221-01A-11D-2317-26	TCGA-CQ-6223-01A-11D-1911-02	TCGA-CQ-6224-01A-11D-1911-02	TCGA-CQ-6225-01A-11D-1911-02	TCGA-CQ-6229-01A-11D-1911-02	TCGA-CQ-7065-01A-11D-2317-26	TCGA-CQ-7068-01A-11D-2317-26	TCGA-CV-5431-01A-01D-1509-02	TCGA-CV-5439-01A-01D-1681-02	TCGA-CV-5966-01A-11D-1681-02	TCGA-CV-5970-01A-11D-1681-02	TCGA-CV-5971-01A-11D-1681-02	TCGA-CV-5973-01A-11D-1681-02	TCGA-CV-5976-01A-11D-1681-02	TCGA-CV-5977-01A-11D-1681-02	TCGA-CV-6003-01A-11D-1681-02	TCGA-CV-6436-01A-11D-1681-02	TCGA-CV-6441-01A-11D-1681-02	TCGA-CV-6933-01A-11D-1911-02	TCGA-CV-6938-01A-11D-1911-02	TCGA-CV-6939-01A-11D-1911-02	TCGA-CV-6945-01A-11D-1911-02	TCGA-CV-6948-01A-11D-1911-02	TCGA-CV-6951-01A-11D-1911-02	TCGA-CV-6952-01A-11D-1911-02	TCGA-CV-6954-01A-11D-1911-02	TCGA-CV-6959-01A-11D-1911-02	TCGA-CV-6960-01A-41D-2317-26	TCGA-CV-7091-01A-11D-2317-26	TCGA-CV-7095-01A-21D-2317-26	TCGA-CV-7178-01A-21D-2317-26	TCGA-CV-7183-01A-11D-2317-26	TCGA-CV-7238-01A-11D-2317-26	TCGA-CV-7247-01A-11D-2317-26	TCGA-CV-7263-01A-11D-2317-26	TCGA-CV-7407-01A-11D-2317-26	TCGA-CV-7411-01A-11D-2317-26	TCGA-CV-7414-01A-11D-2317-26	TCGA-CV-7428-01A-11D-2317-26	TCGA-CV-7429-01A-11D-2317-26	TCGA-CV-7432-01A-11D-2317-26	TCGA-CV-7434-01A-11D-2317-26	TCGA-CX-7085-01A-21D-2317-26	TCGA-D6-6515-01A-21D-1868-02	TCGA-D6-6517-01A-11D-1868-02	TCGA-D6-6823-01A-11D-1911-02	TCGA-D6-6825-01A-21D-1911-02	TCGA-D6-6826-01A-11D-1911-02	TCGA-D6-6827-01A-11D-1911-02	TCGA-DQ-5624-01A-01D-1868-02	TCGA-DQ-5625-01A-01D-1868-02	TCGA-DQ-5630-01A-01D-1868-02	TCGA-DQ-5631-01A-01D-1868-02	TCGA-H7-7774-01A-21D-2317-26	TCGA-IQ-7632-01A-11D-2317-26	
Amplification Peak  1	2q11.2  	chr2:97149467-99094706(probes 1476:1497)    	chr2:97504221-98285966(probes 1479:1485)    	chr2:97504221-99114869(probes 1479:1499)    	0.13601	    0.13601		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	1	0	0	0	2	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak  2	7p11.2  	chr7:54959582-55684153(probes 7049:7072)    	chr7:55066674-55271334(probes 7054:7061)    	chr7:52840694-63501388(probes 7014:7106)    	3.2397e-12	 3.2397e-12		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	2	2	0	0	1	0	0	1	0	0	0	0	2	0	1	0	0	0	1	0	0	0	0	0	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	1	2	2	1	2	0	0	0	1	0	0	0	0	0	2	0	0	0	0	2	0	0	1	1	2	1	0	0	0	2	
Amplification Peak  3	7q21.3  	chr7:87928365-104608925(probes 7259:7354)  	chr7:92958178-93204033(probes 7285:7286)    	chr7:87928366-104002274(probes 7260:7349)  	0.017155	   0.017155		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	1	0	0	0	2	0	0	1	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	
Amplification Peak  4	8p11.23 	chr8:38021977-38562621(probes 7942:7955)    	chr8:38281648-38285105(probes 7949:7950)    	chr8:37185847-40526848(probes 7909:8003)    	5.2659e-06	 5.2659e-06		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	2	0	0	0	0	0	0	0	0	0	1	1	2	2	0	2	0	1	0	1	0	1	0	0	0	0	1	2	0	0	1	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	1	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak  5	8q11.21 	chr8:49126904-50064004(probes 8078:8093)    	chr8:49270422-49569938(probes 8079:8084)    	chr8:49270422-50087234(probes 8079:8095)    	0.14491	    0.14491		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	0	0	0	2	0	0	2	1	1	1	1	2	2	1	1	0	1	0	1	1	1	0	1	2	0	1	1	0	2	1	0	0	0	1	0	1	1	0	0	1	0	0	0	1	1	0	0	2	2	0	0	0	0	1	1	0	1	1	0	0	1	0	0	2	1	2	2	0	0	0	0	0	1	2	1	1	0	1	1	1	1	2	0	1	1	1	1	0	0	2	0	0	2	0	0	1	2	0	1	0	1	2	1	0	0	0	
Amplification Peak  6	9p22.3  	chr9:10028278-16803132(probes 8759:8836)    	chr9:14915898-15101941(probes 8802:8805)    	chr9:13397965-16803132(probes 8788:8836)    	0.039788	   0.039788		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	2	0	0	0	0	2	0	1	0	2	0	1	0	0	0	0	0	2	0	1	0	2	1	0	1	0	0	0	0	1	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	2	0	0	0	0	0	0	0	0	1	0	0	1	0	
Amplification Peak  7	11q13.3 	chr11:69545150-70374929(probes 10881:10902)	chr11:69718775-70319230(probes 10898:10899)	chr11:68239923-72146168(probes 10770:11032)	2.4815e-31	 2.4815e-31		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	2	2	2	2	2	0	0	1	0	1	0	0	0	1	0	0	2	0	0	1	0	0	2	0	1	0	2	0	0	2	0	0	0	0	2	2	2	2	0	0	2	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	1	0	2	0	0	1	0	2	1	2	2	0	0	1	0	0	2	0	2	0	0	1	1	0	2	2	0	0	2	0	1	0	2	0	0	2	1	0	0	1	0	2	2	1	0	2	0	2	0	0	
Amplification Peak  8	12q15   	chr12:69017418-70739579(probes 11923:11948)	chr12:69703695-69802930(probes 11932:11935)	chr12:69219805-70781203(probes 11924:11950)	0.037625	   0.037625		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	2	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	
Amplification Peak  9	17q12   	chr17:37561554-38464082(probes 14570:14581)	chr17:37634630-38024271(probes 14571:14580)	chr17:37634630-38531363(probes 14571:14583)	0.14491	    0.14491		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 10	18q11.2 	chr18:19750821-24904993(probes 14995:15112)	chr18:20662673-20702507(probes 15010:15011)	chr18:20662673-21268769(probes 15010:15014)	0.18324	    0.18324		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	2	0	0	0	0	0	1	0	2	1	2	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 11	20q11.22	chr20:31396044-34435677(probes 16081:16146)	chr20:33026958-33174851(probes 16114:16119)	chr20:32658592-34435677(probes 16106:16146)	0.043628	   0.043628		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	0	0	1	1	0	0	0	0	0	2	2	1	2	0	1	0	0	1	1	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	2	2	2	0	0	1	0	0	0	0	0	0	0	1	2	0	0	0	2	0	0	0	0	2	1	2	1	0	2	2	1	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	
Deletion Peak 1	8p23.2	chr8:3505239-3868542(probes 7709:7726)    	chr8:3695988-3738402(probes 7715:7720)    	chr8:3695988-3872542(probes 7715:7728)    	0.13056	   0.13056		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	1	0	1	1	0	0	0	1	0	0	1	0	0	1	1	1	0	1	1	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	2	1	1	0	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	1	1	1	1	0	1	1	0	0	1	0	1	0	1	1	0	0	1	0	0	1	1	1	1	0	1	1	1	1	0	0	
Deletion Peak 2	9p21.3	chr9:21969802-21994304(probes 8961:8970)	chr9:21973950-21979760(probes 8966:8967)	chr9:21448286-22608295(probes 8908:9031)	2.698e-19	 2.698e-19		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	2	0	1	1	0	0	1	0	0	0	0	1	0	0	1	1	1	1	1	0	1	2	0	1	0	1	1	0	1	1	0	1	1	1	1	0	1	1	1	0	0	1	1	0	1	0	1	0	0	0	0	2	1	0	1	0	1	1	1	1	1	1	0	1	1	0	0	1	2	1	0	0	1	2	0	1	0	0	1	1	0	0	0	0	1	1	1	1	0	1	1	1	2	1	0	2	1	0	0	0	1	1	0	1	1	1	
Amplification Peak  1 - CN values	2q11.2  	chr2:97149467-99094706(probes 1476:1497)    	chr2:97504221-98285966(probes 1479:1485)    	chr2:97504221-99114869(probes 1479:1499)    	0.13601	    0.13601		Actual Copy Change Given	0.059099	0.45498	0.81911	-0.001095	0	-0.02125	0.00052734	0.055952	0.29081	-0.091561	-0.0044689	-0.17295	0.018388	0.0097333	-0.084649	0.0074452	0.036602	0.4048	-0.014764	0.011736	-0.0094656	0.017087	0	0.036529	-0.15399	6	0	-0.1012	0.0021283	-0.034993	0.24461	-0.03303	0.15633	0.13619	-0.019913	-0.052147	0.012038	0.19183	0	-0.0057904	0.012408	-0.040974	-0.1611	0.038869	0.048113	-0.030679	0.17578	0.00084356	0.046611	0	0.0041519	-0.086823	0	0.008914	-0.012973	-0.022067	0.25191	-0.0093081	-0.025287	0.0018715	0.54977	-0.0047202	-0.0067159	-0.003151	0	6	0.0051251	-0.33408	-0.20245	0.013661	0.031586	0.32301	-0.0084386	-0.010311	-0.22311	0.022968	0.47177	0.010373	0.022258	-0.0068792	2.447	-0.34398	0.031562	0.44111	0.0015959	-0.015458	0.068827	0.040646	0.12638	0.0033592	0.44064	-0.057337	0.0040536	0.023823	0.041995	-0.00021696	-0.048282	-0.0008556	0.034651	0.0022403	-0.28049	0.017868	-0.0061112	-0.021378	0.060922	-0.015693	-0.016722	-0.013548	
Amplification Peak  2 - CN values	7p11.2  	chr7:54959582-55684153(probes 7049:7072)    	chr7:55066674-55271334(probes 7054:7061)    	chr7:52840694-63501388(probes 7014:7106)    	3.2397e-12	 3.2397e-12		Actual Copy Change Given	0.61553	2.3883	5.9778	0.009944	0.016398	0.82766	-0.0042356	-0.0082303	0.36011	0.040601	-0.0028931	-0.23711	0.0019737	2.4356	-0.08692	0.32304	0.059159	-0.010241	0.13621	0.88646	0.2627	0.22532	-0.027118	0.024032	0.0063139	0.63551	3.6449	0.17864	-0.0015893	-0.0019497	-0.01074	0.033161	0.16247	-0.035805	0.76503	0.13437	0.0026716	0.16557	0.074645	-0.0014533	0.015373	0.33629	-0.063436	0.039666	0.088963	0.21875	-0.26087	-0.0034013	0	1.1361	3.0325	0.21093	0.24517	-0.0059873	0.069274	0.1302	0.2645	2.6166	0.024465	1.2566	1.4264	0.2848	0	0.0016513	0.081591	0.0017161	6	-0.31183	-0.16965	-0.00031666	0.023952	6	-0.011766	-0.0070985	0.068811	0.035477	0.95915	-0.0022462	0.43946	6	6	0.47039	3.5498	-0.0066449	0.049135	0.049984	0.59714	0.023825	0.26209	-0.0030213	0.017829	0.03602	3.6585	0.025915	-0.0094273	-0.011681	-0.02367	1.6878	0.022838	-0.010804	0.33982	0.52712	3.713	0.40045	0.045113	0.2373	0.064523	6	
Amplification Peak  3 - CN values	7q21.3  	chr7:87928365-104608925(probes 7259:7354)  	chr7:92958178-93204033(probes 7285:7286)    	chr7:87928366-104002274(probes 7260:7349)  	0.017155	   0.017155		Actual Copy Change Given	-0.53011	0.0096915	0.2353	0.009944	0.016398	0.016983	-0.0042356	0.0077067	-0.0087445	0.040601	-0.0028931	-0.22809	-0.010358	-0.53873	-0.08692	0.32304	0.059159	0.39744	0.13621	-0.34732	-0.61807	-0.040818	-0.015402	0.91538	0.0063139	-0.30785	0.16605	0.17864	3.8114	-0.0019497	-0.0089904	0.033161	0.16247	0.27655	-0.016825	0.47802	0.0026716	0.22565	0.09283	0.0009978	0.34188	1.5303	0.021603	-0.23235	0.016828	-0.1482	-0.26509	-0.0034013	0	0.00066908	-0.003188	-0.09255	-0.27243	-0.0059873	0.020799	-0.022011	0.30634	0	0.024465	-0.010055	1.7979	0.2848	0	0.0016513	0.081591	0.0017161	0.0088169	-0.31183	-0.16965	-0.00031666	0.891	2.7225	-0.011766	-0.0070985	0.050833	0.04541	0.50748	-0.0022462	-0.40741	-0.0065948	3.8606	-0.29516	0.011139	0.88357	0.049135	0.049984	6	0.023825	0.26209	-0.0030213	3.2497	0.03602	-0.20403	0.025915	-0.0094273	0.0022424	-0.068837	-0.016985	-0.28023	-0.010804	0.32974	0.52712	0.0070424	0.41404	-0.01561	0.24306	0.064523	-0.079335	
Amplification Peak  4 - CN values	8p11.23 	chr8:38021977-38562621(probes 7942:7955)    	chr8:38281648-38285105(probes 7949:7950)    	chr8:37185847-40526848(probes 7909:8003)    	5.2659e-06	 5.2659e-06		Actual Copy Change Given	-0.54134	1.3756	-0.8328	0.0038258	0.0097227	-0.39356	-0.25922	0.0013248	0.0043912	-0.28822	-0.4529	0.69589	0.74889	6	1.1473	0.0065006	6	-0.4352	0.80505	-0.0012615	0.42743	-0.16075	0.46132	0.053028	-0.36845	-0.10766	-0.15573	0.56167	3.6737	0.033475	-0.26349	0.45871	0.19398	-0.18366	1.6014	-0.22936	0	-0.25091	-0.38015	-0.061626	-0.48211	-0.53527	0.012856	0.53161	0.019681	-0.37075	-0.011878	-0.20166	0.00018849	-0.092379	-0.27502	-0.25216	-0.0042685	0.013273	0.081271	0.19423	4.6279	0.6626	-0.75764	0.58934	0.10991	0.0057714	-0.42583	-0.10037	0.030605	-0.51328	-0.56193	-0.3414	0.55852	-0.21251	5.716	-0.51188	0.047012	-0.021086	0.054063	-0.79885	-0.051234	-0.53342	3.246	-0.36317	-0.62205	0.033683	2.0094	-0.00089223	-0.0054837	-0.18489	-0.49804	0.30065	1.2864	0.0018598	3.2173	0.012379	-0.13163	-0.11755	-0.72621	0.01135	0.050618	-0.36259	0.0090068	-0.43175	0.028015	-0.02528	0.087437	-0.49197	-0.1413	0.24816	0.016612	0.080571	
Amplification Peak  5 - CN values	8q11.21 	chr8:49126904-50064004(probes 8078:8093)    	chr8:49270422-49569938(probes 8079:8084)    	chr8:49270422-50087234(probes 8079:8095)    	0.14491	    0.14491		Actual Copy Change Given	0.020156	0.74788	-0.82929	0.0038258	0.0097227	1.2012	0.075859	0.0013248	1.8111	0.34735	0.43183	0.62845	0.74889	1.6557	1.1473	0.35848	0.46678	0.01925	0.80505	-0.0012615	0.42743	0.34891	0.51706	0.053028	0.51373	1.0477	0.23953	0.56167	0.66844	0.033475	6	0.45871	0.19398	-0.20305	-0.35107	0.43958	0	0.58869	0.31637	0.025429	0.14849	0.43607	0.070689	0.083589	0.041882	0.54544	0.76007	0.24425	0.00018849	1.1358	1.5602	0.241	-0.0042685	0.013273	0.060056	0.55762	0.34354	0.18123	0.74135	0.58934	-0.19233	0.0057714	0.39767	0.045746	0.030605	1.0417	0.55254	2.0424	0.93071	0.22145	0.015233	0.23153	0.047012	-0.021086	0.6377	0.90837	0.50654	0.52043	0.097149	0.32441	0.61695	0.32841	0.6048	6	-0.0054837	0.45826	0.4331	0.31024	0.55671	0.0018598	0.0032383	0.99018	-0.13163	-0.11755	1.3751	0.01135	-0.023985	0.49915	0.97789	0.020357	0.32693	-0.02528	0.75435	1.3496	0.30178	-0.10159	0.016612	0.11184	
Amplification Peak  6 - CN values	9p22.3  	chr9:10028278-16803132(probes 8759:8836)    	chr9:14915898-15101941(probes 8802:8805)    	chr9:13397965-16803132(probes 8788:8836)    	0.039788	   0.039788		Actual Copy Change Given	-0.5096	-0.079005	-0.83068	0	-0.84544	-0.38495	0.00021113	0	-0.37494	0.18829	-0.016578	0.56547	-0.0074944	-0.52241	-0.099358	-0.011187	0.46041	-0.39914	-0.30106	-0.4203	-0.643	-0.31793	1.0068	-0.65855	-0.0058779	-0.38057	-0.151	-0.00076974	-0.22984	0.0097245	-0.27004	0.33714	-0.12031	-1.123	-0.33643	2.2306	-0.019515	0	6	0.0084225	-0.42941	-0.10948	0.069819	1.5088	-0.27227	0.3573	0.016902	1.2542	0.050066	0.53242	0.26552	0.14621	-0.005672	-0.68373	0.11038	1.7612	-0.61086	0.40124	-0.75657	1.8548	0.59224	-0.31695	0.66675	-0.018326	0.050162	-0.49877	-0.55451	0.43374	-0.071735	0.40661	-0.45013	-0.48867	0.14041	0.30091	-0.53466	-0.79045	-0.026717	0.49027	-0.0015944	-0.0068034	-0.61174	-0.33017	0.13507	-0.01343	0.0040861	-0.2077	-0.52825	-0.5764	4.9914	0.010109	0	0.21451	0.55061	-0.34766	3.5541	0.028776	0.17388	0.034632	-0.57794	-0.013259	-0.28699	-0.078537	-0.19645	0.44555	-0.22201	-0.41204	0.36564	-0.083218	
Amplification Peak  7 - CN values	11q13.3 	chr11:69545150-70374929(probes 10881:10902)	chr11:69718775-70319230(probes 10898:10899)	chr11:68239923-72146168(probes 10770:11032)	2.4815e-31	 2.4815e-31		Actual Copy Change Given	6	6	6	1.9614	6	6	0.0027176	-0.76569	0.66352	-0.044729	0.84722	-0.078427	-0.0015926	-0.010119	0.3761	0	0.0080097	2.5466	-0.088924	0.0041128	0.65413	-0.20362	0.0049156	6	-0.18657	0.31179	0.25157	1.872	0.23656	-0.011649	6	0.22674	-0.12187	-0.091796	-0.46294	4.2038	2.1691	1.9875	6	0.0074852	0.15467	5.681	0.023922	0.060061	0	0.1254	-0.2551	0.19923	-0.014775	1.1338	0.0023215	0.0076897	0.0075176	6	0	-0.22751	0.21743	0.2542	0.71334	-0.0077225	3.3365	-0.12678	0.012356	0.89558	0.025376	2.6648	0.62167	6	1.0429	0.0039093	-0.36461	0.74506	0.0079008	-0.46919	6	0.059938	0.91294	-0.0012269	0	0.34026	0.61308	0.05836	3.6955	3.909	0.0031112	0.0040603	6	-0.28147	0.33342	0.0050761	6	0	0	6	0.33283	0.029691	-0.082301	0.39106	0.01641	5.3892	2.281	0.72353	0.056008	6	-0.043165	1.3904	0.013591	-0.060883	
Amplification Peak  8 - CN values	12q15   	chr12:69017418-70739579(probes 11923:11948)	chr12:69703695-69802930(probes 11932:11935)	chr12:69219805-70781203(probes 11924:11950)	0.037625	   0.037625		Actual Copy Change Given	0.012651	-0.18857	0.0085991	0.018802	0.037861	0.024829	0	0.026987	0.030019	-0.048685	0	0.58997	0.76206	-0.006121	0.38956	-0.025251	0.39428	0.5401	-0.28724	0.001777	-0.01145	0.013892	0.51807	0.032705	0.0083489	0.2671	-0.027529	0.14482	0.0025677	0.0016098	-0.0049193	-0.14522	0.11949	0.16166	0.017249	-0.044071	-0.0025558	-9.5805e-05	-0.013943	-0.0041401	0.0076696	0.0093859	-0.025259	0.029738	-0.10387	0.13872	0	0.0015811	0.0067094	-0.0028377	-0.010452	-0.11858	0.14558	0.001662	-0.078419	0.156	-0.22161	0.096076	-0.00031033	0	0	0.015653	0.0098917	0.0030582	0.02846	0.008966	-0.21037	-0.3345	-0.1517	-0.0015816	0.026284	-0.12813	-0.014081	0	-0.23548	1.8487	0.043844	0.0021624	0.010877	0.34403	-0.60796	6	0.018521	-0.0014509	-0.0037037	-0.0096186	0.12766	-0.25013	0.31488	-0.0010011	0.017484	6	0.030211	-0.097203	-0.00026706	0	0.12104	-0.027754	0.050666	-0.0062101	6	0	-0.16721	0.028098	-0.015056	-0.078884	0.56343	0.10775	
Amplification Peak  9 - CN values	17q12   	chr17:37561554-38464082(probes 14570:14581)	chr17:37634630-38024271(probes 14571:14580)	chr17:37634630-38531363(probes 14571:14583)	0.14491	    0.14491		Actual Copy Change Given	0.0363	-0.20426	-0.023929	-0.013353	-0.011998	0.05632	0.0027014	0.10771	0.004911	0.027427	0.010232	-0.19421	-0.037408	-0.10104	0.33899	-0.095159	-0.074656	-0.067923	0.072456	0.069431	-0.069977	-0.20248	-0.055747	-0.069727	-0.045022	0.2362	-0.023373	-0.11247	-0.0068943	-0.024583	0.0036692	0.057464	0.22045	0.05869	-0.034201	0.011924	0.020195	0.46438	0.0019926	0.035692	0.051812	-0.11002	-0.1373	-0.01748	-0.0074753	0.12837	0.02578	0.023046	0.008206	-0.036194	0.0037586	0.11056	0.34832	-0.34455	0.071646	-0.23641	6	0.0045294	-0.010002	0.0075922	6	-0.031842	-0.1646	0.26945	-0.027824	-0.0067422	-0.0090586	0.51925	0.22525	-0.0029765	0.040291	0.18821	-0.053824	0.054594	0	0.081483	0.45076	0.0076683	-0.022051	0.022912	-0.026424	-0.33376	-0.12172	-0.0082712	-0.0027884	-0.01913	0.11488	0.0093393	-0.038814	-0.023739	3.5652	0.0014013	-0.20131	-0.0036229	0.026616	-0.029554	-0.17645	-0.15435	-0.21332	-0.039724	-0.27731	-0.015231	-0.22173	-0.061093	-0.037287	-0.058343	-0.033954	0.091498	
Amplification Peak 10 - CN values	18q11.2 	chr18:19750821-24904993(probes 14995:15112)	chr18:20662673-20702507(probes 15010:15011)	chr18:20662673-21268769(probes 15010:15014)	0.18324	    0.18324		Actual Copy Change Given	1.9154	0.27732	3.3687	-0.0096365	0.0098503	-0.019266	0.21494	0.00030208	0.30809	-0.21154	0.90435	0.3739	1.6404	2.2498	0.44577	0.024876	-0.17415	-0.401	0.15646	0.67034	-0.016724	-0.23671	-0.018054	0.0028983	0.19816	-0.084791	-0.014112	-0.17593	-0.02503	0.023958	-0.015722	-0.45087	-0.13408	0.12695	0.069875	-0.23207	0.01141	-0.2536	0.10122	-0.0082345	-0.03403	-0.1776	-0.080858	-0.021475	0.015308	0.02404	-0.26274	-0.19925	-0.0059988	0.0053013	-0.0071695	-0.23824	0.011288	-0.00652	-0.34676	-0.011951	-0.72337	0.19477	0.68911	-0.01729	-0.012102	0.6598	-0.17916	-0.34527	-0.019254	0.01334	-0.001308	0.53088	-0.5681	-0.0021988	-0.39894	-0.48845	-0.030445	-0.0036091	-0.5197	0.074988	0.39594	0.0048633	6	-0.012665	-0.55057	-0.33848	-0.18726	-0.016252	0.00045492	-0.050036	-0.084475	-0.2816	-0.32689	-0.0029776	-0.0032568	-0.022693	-0.48476	-0.31699	2.2066	-0.018341	-0.00040475	-0.094126	-0.11532	-0.40483	-0.0054792	-0.00096959	-0.2202	-0.041695	-0.064069	0.035932	-0.011928	-0.06744	
Amplification Peak 11 - CN values	20q11.22	chr20:31396044-34435677(probes 16081:16146)	chr20:33026958-33174851(probes 16114:16119)	chr20:32658592-34435677(probes 16106:16146)	0.043628	   0.043628		Actual Copy Change Given	0.050129	0.7386	-0.03958	-0.0019411	0.79849	0.48677	0.18633	0.01126	-0.038618	0.029065	0.033255	1.5462	3.0641	0.39919	1.6785	0.011578	0.50032	-0.052621	-0.13241	0.39962	0.41942	0.27642	-0.02337	-0.042483	0.14926	0.17067	0.11475	0.41267	0.21843	0.68552	0.52969	-0.0097529	0.13426	-0.26785	0.15108	0.13018	0.035675	0.25652	0.014239	0.031398	-0.16269	0.40106	0.0014027	0.28426	0.030568	0.12188	0.030999	-0.0013128	0.051069	1.1015	1.0635	2.0279	2.019	-0.0013936	0.11351	0.46938	0.26643	0.2974	0.0070449	0.015448	-0.01508	0.10085	0.04497	0.32691	1.1713	0.010007	0.23952	0.092677	6	0.015253	0.024297	0.12809	0.026365	1.675	0.37744	1.8636	0.43432	0.010574	1.857	6	0.59949	0.035802	0.45499	0.4411	0.0053308	-0.0075805	-0.12221	0.30411	-0.30429	-0.0046886	0.028393	0.00024021	0.039948	0.062857	0.0075816	-0.0011457	-0.05488	0.04408	0.27366	-0.025937	-0.28593	-0.0073335	0.63475	-0.024741	0.089217	1.1764	-0.014347	0.29301	
Deletion Peak 1 - CN values	8p23.2	chr8:3505239-3868542(probes 7709:7726)    	chr8:3695988-3738402(probes 7715:7720)    	chr8:3695988-3872542(probes 7715:7728)    	0.13056	   0.13056		Actual Copy Change Given	-0.54134	0.093225	-0.057262	-0.45107	0.0097227	-1.1664	-0.54748	0.032567	0.0043912	-0.28822	-0.4529	0.69589	0.74889	-0.54364	1.1473	0.0065006	-0.73798	-0.4506	-0.34432	-0.0012615	-0.64391	-0.74673	0.46132	-0.78369	-0.36845	-0.10766	-0.15573	-0.07892	-0.24111	0.033475	-0.26349	0.43735	-0.71379	-0.18722	-0.23195	-0.22936	-0.22675	-0.25091	-0.38015	-0.061626	-0.48211	-0.68303	-0.25863	-0.26196	0.01383	-0.40748	-0.028041	-0.23772	0.00018849	-0.092379	-0.27502	-0.25216	-0.0042685	0.0013527	0.081271	-0.48125	-0.72037	-0.24042	-1.4676	-0.67412	-0.3583	0.0057714	-0.42583	-0.10037	0.030605	-0.50299	-0.56193	-0.37541	0.55852	-0.21251	-0.091813	-0.47466	-0.29943	-0.021086	0.01841	-0.79885	-0.051234	-0.53342	-0.414	-0.35885	-0.62205	-0.031542	-0.41777	-0.51205	-0.15636	-0.18489	-0.49804	0.30065	-0.30383	0.0018598	-0.81017	-1.2009	-0.13163	-0.11755	-0.72621	0.01135	-0.064475	-0.35396	-0.61896	-0.43175	-0.60875	-0.02528	-0.8727	-0.49197	-0.3223	-0.60509	0.016612	-0.26439	
Deletion Peak 2 - CN values	9p21.3	chr9:21969802-21994304(probes 8961:8970)	chr9:21973950-21979760(probes 8966:8967)	chr9:21448286-22608295(probes 8908:9031)	2.698e-19	 2.698e-19		Actual Copy Change Given	-1.1293	-0.079005	-1.5	0	-0.84544	-0.38495	0.00021113	0	-0.37494	0.18829	-0.016578	0.56547	-0.0074944	-0.52241	-0.099358	-0.011187	-0.66196	-1.1542	-0.30106	-0.4203	-0.643	-0.25029	-0.49439	-1.3507	-0.0058779	-0.38057	-0.151	-0.88968	-0.71014	0.0097245	-0.73276	-0.88133	-0.12031	-1.123	-0.71171	-0.57006	-0.45884	0	-1.0941	-0.39199	-0.42941	-0.014089	0.069819	-0.83301	-0.6115	0.3163	-0.50958	-0.16424	-0.8977	0.53242	0.26552	0.14621	-0.005672	-1.3909	-0.62338	-0.1037	-0.61086	0.40124	-0.75657	-1.257	-0.89929	-0.31695	-0.72427	-1.035	0.050162	-0.49877	-0.55451	0.43374	0	-0.35506	-1.5	-0.48867	0.14041	0.30091	-0.53466	-1.5	-0.026717	-1.0316	-0.0015944	-0.0068034	-0.61174	-0.33017	0.046454	-0.01343	0.0040861	-0.2077	-0.52825	-0.5764	-0.67398	-0.76742	0	-1.1911	-1.0273	-0.34766	-1.4333	-0.50206	0.22666	-1.3062	-1.1984	-0.013259	-0.27697	-0.078537	-0.37923	-0.99504	-0.2896	-0.41204	-1.1461	-0.44297	
