name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme_name	cov_idx	N_tot	N_c	nsil_tot	nnon_tot	n_tot	rate_sil	rate_non	rate_tot	log_rate_tot	n_c	n_ind	N_ind	rate_c	rate_ind
TCGA-18-3406-01A-01D-0983-08	310	305	5	228	1.612903e-02	coding only	1	28835288	...	77	225	310	2.670339e-06	7.802939e-06	1.075072e-05	-4.968563e+00	...	3	28779097	...	1.042423e-07
TCGA-18-3407-01A-01D-0983-08	171	167	4	128	2.339181e-02	coding only	1	28835288	...	39	126	171	1.352509e-06	4.369646e-06	5.930234e-06	-5.226928e+00	...	2	28779097	...	6.949488e-08
TCGA-18-3408-01A-01D-0983-08	107	104	3	84	2.803738e-02	coding only	1	28835288	...	20	78	107	6.935946e-07	2.705019e-06	3.710731e-06	-5.430541e+00	...	6	28779097	...	2.084847e-07
TCGA-18-3409-01A-01D-0983-08	3684	3640	44	2440	1.194354e-02	coding only	1	28835288	...	1198	2432	3682	4.154632e-05	8.434110e-05	1.276908e-04	-3.893841e+00	...	7	28779097	...	2.432321e-07
TCGA-18-3410-01A-01D-0983-08	310	308	2	236	6.451613e-03	coding only	1	28835288	...	72	230	310	2.496941e-06	7.976338e-06	1.075072e-05	-4.968563e+00	...	6	28779097	...	2.084847e-07
TCGA-18-3411-01A-01D-0983-08	428	422	6	323	1.401869e-02	coding only	1	28835288	...	99	318	427	3.433293e-06	1.102815e-05	1.480824e-05	-4.829496e+00	...	4	28779097	...	1.389898e-07
TCGA-18-3412-01A-01D-0983-08	208	205	3	161	1.442308e-02	coding only	1	28835288	...	44	159	208	1.525908e-06	5.514077e-06	7.213384e-06	-5.141861e+00	...	2	28779097	...	6.949488e-08
TCGA-18-3414-01A-01D-0983-08	398	392	6	313	1.507538e-02	coding only	1	28835288	...	79	306	398	2.739699e-06	1.061200e-05	1.380253e-05	-4.860041e+00	...	7	28779097	...	2.432321e-07
TCGA-18-3415-01A-01D-0983-08	210	209	1	158	4.761905e-03	coding only	1	28835288	...	51	158	210	1.768666e-06	5.479397e-06	7.282743e-06	-5.137705e+00	...	0	28779097	...	0
TCGA-18-3416-01A-01D-0983-08	513	502	11	382	2.144250e-02	coding only	1	28835288	...	120	379	513	4.161568e-06	1.314362e-05	1.779070e-05	-4.749807e+00	...	3	28779097	...	1.042423e-07
TCGA-18-3417-01A-01D-1441-08	330	329	1	260	3.030303e-03	coding only	1	28835288	...	69	258	330	2.392901e-06	8.947370e-06	1.144431e-05	-4.941410e+00	...	2	28779097	...	6.949488e-08
TCGA-18-3419-01A-01D-0983-08	449	447	2	344	4.454343e-03	coding only	1	28835288	...	103	338	449	3.572012e-06	1.172175e-05	1.557120e-05	-4.807678e+00	...	6	28779097	...	2.084847e-07
TCGA-18-3421-01A-01D-0983-08	452	447	5	342	1.106195e-02	coding only	1	28835288	...	105	334	451	3.641372e-06	1.158303e-05	1.564056e-05	-4.805748e+00	...	7	28779097	...	2.432321e-07
TCGA-18-4083-01A-01D-1352-08	347	347	0	280	0	coding only	1	28835288	...	67	279	347	2.323542e-06	9.675645e-06	1.203387e-05	-4.919595e+00	...	1	28779097	...	3.474744e-08
TCGA-18-4086-01A-01D-1352-08	196	193	3	144	1.530612e-02	coding only	1	28835288	...	49	139	196	1.699307e-06	4.820482e-06	6.797227e-06	-5.167668e+00	...	5	28779097	...	1.737372e-07
TCGA-18-4721-01A-01D-1441-08	200	193	7	139	3.500000e-02	exome+100bp flanks	2	35791301	...	54	139	200	1.508746e-06	3.883625e-06	5.587950e-06	-5.252747e+00	...	0	32078718	...	0
TCGA-18-5592-01A-01D-1632-08	323	320	3	259	9.287926e-03	coding only	1	28835288	...	61	248	322	2.115464e-06	8.600573e-06	1.116687e-05	-4.952068e+00	...	10	28779097	...	3.474744e-07
TCGA-18-5595-01A-01D-1632-08	270	265	5	194	1.851852e-02	coding only	1	28835288	...	71	193	270	2.462261e-06	6.693188e-06	9.363527e-06	-5.028561e+00	...	1	28779097	...	3.474744e-08
TCGA-21-1070-01A-01D-1521-08	544	537	7	434	1.286765e-02	coding only	1	28835288	...	103	432	543	3.572012e-06	1.498164e-05	1.883109e-05	-4.725124e+00	...	1	28779097	...	3.474744e-08
TCGA-21-1071-01A-01D-1521-08	207	206	1	168	4.830918e-03	coding only	1	28835288	...	38	168	207	1.317830e-06	5.826195e-06	7.178704e-06	-5.143954e+00	...	0	28779097	...	0
TCGA-21-1076-01A-02D-1521-08	342	340	2	266	5.847953e-03	coding only	1	28835288	...	74	265	341	2.566300e-06	9.190128e-06	1.182579e-05	-4.927170e+00	...	0	28779097	...	0
TCGA-21-1077-01A-01D-1521-08	239	233	6	176	2.510460e-02	coding only	1	28835288	...	57	174	238	1.976745e-06	6.034273e-06	8.253776e-06	-5.083347e+00	...	1	28779097	...	3.474744e-08
TCGA-21-1078-01A-01D-1521-08	89	89	0	70	0	coding only	1	28835288	...	19	65	88	6.589149e-07	2.254182e-06	3.051816e-06	-5.515442e+00	...	4	28779097	...	1.389898e-07
TCGA-21-1081-01A-01D-1521-08	215	210	5	166	2.325581e-02	coding only	1	28835288	...	44	163	215	1.525908e-06	5.652796e-06	7.456142e-06	-5.127486e+00	...	3	28779097	...	1.042423e-07
TCGA-21-5782-01A-01D-1632-08	439	438	1	339	2.277904e-03	coding only	1	28835288	...	99	338	439	3.433293e-06	1.172175e-05	1.522440e-05	-4.817460e+00	...	1	28779097	...	3.474744e-08
TCGA-21-5784-01A-01D-1632-08	238	238	0	185	0	coding only	1	28835288	...	53	185	238	1.838026e-06	6.415750e-06	8.253776e-06	-5.083347e+00	...	0	28779097	...	0
TCGA-21-5786-01A-01D-1632-08	425	421	4	332	9.411765e-03	coding only	1	28835288	...	89	325	425	3.086496e-06	1.127091e-05	1.473889e-05	-4.831535e+00	...	7	28779097	...	2.432321e-07
TCGA-21-5787-01A-01D-1632-08	464	457	7	357	1.508621e-02	coding only	1	28835288	...	100	343	464	3.467973e-06	1.189515e-05	1.609139e-05	-4.793406e+00	...	14	28779097	...	4.864642e-07
TCGA-22-0944-01A-01D-1521-08	143	143	0	107	0	coding only	1	28835288	...	36	106	143	1.248470e-06	3.676051e-06	4.959201e-06	-5.304588e+00	...	1	28779097	...	3.474744e-08
TCGA-22-1002-01A-01D-1521-08	254	252	2	201	7.874016e-03	coding only	1	28835288	...	51	201	254	1.768666e-06	6.970626e-06	8.808651e-06	-5.055091e+00	...	0	28779097	...	0
TCGA-22-1011-01A-01D-1521-08	120	119	1	91	8.333333e-03	coding only	1	28835288	...	28	91	120	9.710324e-07	3.155855e-06	4.161568e-06	-5.380743e+00	...	0	28779097	...	0
TCGA-22-1012-01A-01D-1521-08	309	302	7	231	2.265372e-02	coding only	1	28835288	...	71	229	309	2.462261e-06	7.941658e-06	1.071604e-05	-4.969966e+00	...	2	28779097	...	6.949488e-08
TCGA-22-1016-01A-01D-1521-08	381	377	4	289	1.049869e-02	coding only	1	28835288	...	88	287	381	3.051816e-06	9.953082e-06	1.321298e-05	-4.878999e+00	...	2	28779097	...	6.949488e-08
TCGA-22-4591-01A-01D-1267-08	283	281	2	207	7.067138e-03	coding only	1	28835288	...	74	204	283	2.566300e-06	7.074665e-06	9.814364e-06	-5.008138e+00	...	3	28779097	...	1.042423e-07
TCGA-22-4593-01A-21D-1817-08	216	215	1	160	4.629630e-03	coding only	1	28835288	...	55	154	216	1.907385e-06	5.340678e-06	7.490822e-06	-5.125471e+00	...	6	28779097	...	2.084847e-07
TCGA-22-4595-01A-01D-1267-08	366	364	2	273	5.464481e-03	coding only	1	28835288	...	91	270	366	3.155855e-06	9.363527e-06	1.269278e-05	-4.896443e+00	...	3	28779097	...	1.042423e-07
TCGA-22-4599-01A-01D-1441-08	424	422	2	324	4.716981e-03	coding only	1	28835288	...	98	314	424	3.398614e-06	1.088944e-05	1.470421e-05	-4.832558e+00	...	10	28779097	...	3.474744e-07
TCGA-22-4601-01A-01D-1441-08	234	227	7	171	2.991453e-02	coding only	1	28835288	...	56	164	234	1.942065e-06	5.687476e-06	8.115057e-06	-5.090708e+00	...	7	28779097	...	2.432321e-07
TCGA-22-4604-01A-01D-1267-08	295	293	2	229	6.779661e-03	coding only	1	28835288	...	64	223	295	2.219503e-06	7.733580e-06	1.023052e-05	-4.990102e+00	...	6	28779097	...	2.084847e-07
TCGA-22-4607-01A-01D-1267-08	100	100	0	83	0	coding only	1	28835288	...	17	81	100	5.895554e-07	2.809058e-06	3.467973e-06	-5.459924e+00	...	2	28779097	...	6.949488e-08
TCGA-22-4613-01A-01D-1441-08	715	704	11	543	1.538462e-02	coding only	1	28835288	...	161	535	715	5.583437e-06	1.855366e-05	2.479601e-05	-4.605618e+00	...	8	28779097	...	2.779795e-07
TCGA-22-5471-01A-01D-1632-08	287	283	4	215	1.393728e-02	coding only	1	28835288	...	68	215	287	2.358222e-06	7.456142e-06	9.953082e-06	-5.002042e+00	...	0	28779097	...	0
TCGA-22-5472-01A-01D-1632-08	459	451	8	317	1.742919e-02	coding only	1	28835288	...	134	314	459	4.647084e-06	1.088944e-05	1.591800e-05	-4.798112e+00	...	2	28779097	...	6.949488e-08
TCGA-22-5473-01A-01D-1632-08	930	919	11	676	1.182796e-02	coding only	1	28835288	...	243	662	930	8.427174e-06	2.295798e-05	3.225215e-05	-4.491441e+00	...	13	28779097	...	4.517167e-07
TCGA-22-5474-01A-01D-1632-08	109	109	0	89	0	coding only	1	28835288	...	20	87	109	6.935946e-07	3.017137e-06	3.780091e-06	-5.422498e+00	...	2	28779097	...	6.949488e-08
TCGA-22-5477-01A-01D-1632-08	203	200	3	141	1.477833e-02	coding only	1	28835288	...	59	140	203	2.046104e-06	4.855162e-06	7.039985e-06	-5.152428e+00	...	1	28779097	...	3.474744e-08
TCGA-22-5478-01A-01D-1632-08	212	206	6	157	2.830189e-02	coding only	1	28835288	...	49	153	212	1.699307e-06	5.305999e-06	7.352103e-06	-5.133588e+00	...	4	28779097	...	1.389898e-07
TCGA-22-5480-01A-01D-1632-08	178	176	2	137	1.123596e-02	coding only	1	28835288	...	39	134	178	1.352509e-06	4.647084e-06	6.172992e-06	-5.209504e+00	...	3	28779097	...	1.042423e-07
TCGA-22-5482-01A-01D-1632-08	188	187	1	142	5.319149e-03	coding only	1	28835288	...	45	137	187	1.560588e-06	4.751123e-06	6.485109e-06	-5.188083e+00	...	4	28779097	...	1.389898e-07
TCGA-22-5485-01A-01D-1632-08	239	238	1	182	4.184100e-03	coding only	1	28835288	...	55	178	238	1.907385e-06	6.172992e-06	8.253776e-06	-5.083347e+00	...	4	28779097	...	1.389898e-07
TCGA-22-5489-01A-01D-1632-08	276	273	3	209	1.086957e-02	coding only	1	28835288	...	64	209	276	2.219503e-06	7.248064e-06	9.571605e-06	-5.019015e+00	...	0	28779097	...	0
TCGA-22-5491-01A-01D-1632-08	397	393	4	310	1.007557e-02	coding only	1	28835288	...	83	304	396	2.878418e-06	1.054264e-05	1.373317e-05	-4.862229e+00	...	5	28779097	...	1.737372e-07
TCGA-22-5492-01A-01D-1632-08	252	251	1	192	3.968254e-03	coding only	1	28835288	...	59	191	252	2.046104e-06	6.623828e-06	8.739292e-06	-5.058524e+00	...	1	28779097	...	3.474744e-08
TCGA-33-4532-01A-01D-1267-08	439	429	10	331	2.277904e-02	coding only	1	28835288	...	98	330	438	3.398614e-06	1.144431e-05	1.518972e-05	-4.818450e+00	...	1	28779097	...	3.474744e-08
TCGA-33-4533-01A-01D-1267-08	326	317	9	248	2.760736e-02	coding only	1	28835288	...	69	239	326	2.392901e-06	8.288455e-06	1.130559e-05	-4.946707e+00	...	9	28779097	...	3.127270e-07
TCGA-33-4538-01A-01D-1267-08	221	216	5	165	2.262443e-02	coding only	1	28835288	...	51	161	221	1.768666e-06	5.583437e-06	7.664220e-06	-5.115532e+00	...	4	28779097	...	1.389898e-07
TCGA-33-4547-01A-01D-1267-08	245	241	4	180	1.632653e-02	coding only	1	28835288	...	61	179	245	2.115464e-06	6.207672e-06	8.496534e-06	-5.070758e+00	...	1	28779097	...	3.474744e-08
TCGA-33-4566-01A-01D-1441-08	1424	1411	13	1097	9.129213e-03	coding only	1	28835288	...	314	1070	1424	1.088944e-05	3.710731e-05	4.938394e-05	-4.306414e+00	...	27	28779097	...	9.381809e-07
TCGA-33-4582-01A-01D-1441-08	239	234	5	168	2.092050e-02	coding only	1	28835288	...	66	168	239	2.288862e-06	5.826195e-06	8.288455e-06	-5.081526e+00	...	0	28779097	...	0
TCGA-33-4583-01A-01D-1441-08	617	608	9	456	1.458671e-02	coding only	1	28835288	...	152	448	617	5.271319e-06	1.553652e-05	2.139739e-05	-4.669639e+00	...	8	28779097	...	2.779795e-07
TCGA-33-4586-01A-01D-1441-08	418	411	7	299	1.674641e-02	coding only	1	28835288	...	112	292	418	3.884130e-06	1.012648e-05	1.449613e-05	-4.838748e+00	...	7	28779097	...	2.432321e-07
TCGA-33-6737-01A-11D-1817-08	514	503	11	381	2.140078e-02	coding only	1	28835288	...	122	379	514	4.230927e-06	1.314362e-05	1.782538e-05	-4.748961e+00	...	2	28779097	...	6.949488e-08
TCGA-34-2596-01A-01D-1522-08	306	300	6	217	1.960784e-02	coding only	1	28835288	...	83	209	306	2.878418e-06	7.248064e-06	1.061200e-05	-4.974203e+00	...	8	28779097	...	2.779795e-07
TCGA-34-2600-01A-01D-1522-08	574	570	4	451	6.968641e-03	coding only	1	28835288	...	119	448	574	4.126888e-06	1.553652e-05	1.990616e-05	-4.701012e+00	...	3	28779097	...	1.042423e-07
TCGA-34-2608-01A-02D-1522-08	182	181	1	131	5.494505e-03	coding only	1	28835288	...	50	131	182	1.733986e-06	4.543045e-06	6.311711e-06	-5.199853e+00	...	0	28779097	...	0
TCGA-34-5231-01A-21D-1817-08	745	738	7	564	9.395973e-03	coding only	1	28835288	...	174	551	745	6.034273e-06	1.910853e-05	2.583640e-05	-4.587768e+00	...	13	28779097	...	4.517167e-07
TCGA-34-5232-01A-21D-1817-08	226	224	2	157	8.849558e-03	coding only	1	28835288	...	67	157	226	2.323542e-06	5.444718e-06	7.837619e-06	-5.105816e+00	...	0	28779097	...	0
TCGA-34-5234-01A-01D-1632-08	211	209	2	162	9.478673e-03	coding only	1	28835288	...	47	161	210	1.629947e-06	5.583437e-06	7.282743e-06	-5.137705e+00	...	0	28779097	...	0
TCGA-34-5236-01A-21D-1817-08	248	246	2	182	8.064516e-03	coding only	1	28835288	...	64	182	248	2.219503e-06	6.311711e-06	8.600573e-06	-5.065473e+00	...	0	28779097	...	0
TCGA-34-5239-01A-21D-1817-08	274	268	6	208	2.189781e-02	coding only	1	28835288	...	60	204	274	2.080784e-06	7.074665e-06	9.502246e-06	-5.022174e+00	...	4	28779097	...	1.389898e-07
TCGA-34-5240-01A-01D-1441-08	195	195	0	141	0	coding only	1	28835288	...	54	135	195	1.872705e-06	4.681764e-06	6.762547e-06	-5.169890e+00	...	6	28779097	...	2.084847e-07
TCGA-34-5241-01A-01D-1441-08	1	1	0	0	0	coding only	1	28835288	...	1	0	1	3.467973e-08	0	3.467973e-08	-7.459924e+00	...	0	28779097	...	0
TCGA-34-5927-01A-11D-1817-08	319	318	1	246	3.134796e-03	coding only	1	28835288	...	72	239	318	2.496941e-06	8.288455e-06	1.102815e-05	-4.957497e+00	...	6	28779097	...	2.084847e-07
TCGA-34-5928-01A-11D-1817-08	452	446	6	334	1.327434e-02	coding only	1	28835288	...	112	332	452	3.884130e-06	1.151367e-05	1.567524e-05	-4.804786e+00	...	2	28779097	...	6.949488e-08
TCGA-34-5929-01A-11D-1817-08	236	235	1	179	4.237288e-03	coding only	1	28835288	...	56	178	236	1.942065e-06	6.172992e-06	8.184416e-06	-5.087012e+00	...	1	28779097	...	3.474744e-08
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TCGA-37-4135-01A-01D-1352-08	336	331	5	251	1.488095e-02	coding only	1	28835288	...	80	239	336	2.774378e-06	8.288455e-06	1.165239e-05	-4.933585e+00	...	11	28779097	...	3.822219e-07
TCGA-37-4141-01A-02D-1352-08	374	371	3	293	8.021390e-03	coding only	1	28835288	...	78	284	374	2.705019e-06	9.849043e-06	1.297022e-05	-4.887053e+00	...	9	28779097	...	3.127270e-07
TCGA-37-5819-01A-01D-1632-08	835	828	7	660	8.383234e-03	coding only	1	28835288	...	168	637	835	5.826195e-06	2.209099e-05	2.895757e-05	-4.538238e+00	...	23	28779097	...	7.991912e-07
TCGA-39-5016-01A-01D-1441-08	408	400	8	289	1.960784e-02	coding only	1	28835288	...	111	285	408	3.849450e-06	9.883723e-06	1.414933e-05	-4.849264e+00	...	4	28779097	...	1.389898e-07
TCGA-39-5019-01A-01D-1817-08	218	218	0	160	0	coding only	1	28835288	...	58	155	217	2.011424e-06	5.375358e-06	7.525501e-06	-5.123465e+00	...	4	28779097	...	1.389898e-07
TCGA-39-5021-01A-01D-1441-08	165	163	2	119	1.212121e-02	coding only	1	28835288	...	44	117	165	1.525908e-06	4.057528e-06	5.722155e-06	-5.242440e+00	...	2	28779097	...	6.949488e-08
TCGA-39-5022-01A-21D-1817-08	328	326	2	256	6.097561e-03	coding only	1	28835288	...	70	256	328	2.427581e-06	8.878011e-06	1.137495e-05	-4.944050e+00	...	0	28779097	...	0
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TCGA-39-5027-01A-21D-1817-08	374	370	4	295	1.069519e-02	coding only	1	28835288	...	75	289	373	2.600980e-06	1.002244e-05	1.293554e-05	-4.888215e+00	...	5	28779097	...	1.737372e-07
TCGA-39-5028-01A-01D-1441-08	227	224	3	176	1.321586e-02	coding only	1	28835288	...	48	176	227	1.664627e-06	6.103632e-06	7.872299e-06	-5.103898e+00	...	0	28779097	...	0
TCGA-39-5029-01A-01D-1441-08	170	168	2	135	1.176471e-02	coding only	1	28835288	...	33	135	170	1.144431e-06	4.681764e-06	5.895554e-06	-5.229475e+00	...	0	28779097	...	0
TCGA-39-5030-01A-01D-1441-08	325	323	2	244	6.153846e-03	coding only	1	28835288	...	79	244	325	2.739699e-06	8.461854e-06	1.127091e-05	-4.948041e+00	...	0	28779097	...	0
TCGA-39-5031-01A-01D-1441-08	743	734	9	543	1.211306e-02	coding only	1	28835288	...	191	539	743	6.623828e-06	1.869237e-05	2.576704e-05	-4.588935e+00	...	3	28779097	...	1.042423e-07
TCGA-39-5035-01A-01D-1441-08	182	181	1	134	5.494505e-03	coding only	1	28835288	...	47	134	182	1.629947e-06	4.647084e-06	6.311711e-06	-5.199853e+00	...	0	28779097	...	0
TCGA-39-5036-01A-01D-1441-08	334	330	4	262	1.197605e-02	coding only	1	28835288	...	68	257	334	2.358222e-06	8.912691e-06	1.158303e-05	-4.936178e+00	...	5	28779097	...	1.737372e-07
TCGA-39-5037-01A-01D-1441-08	281	276	5	211	1.779359e-02	coding only	1	28835288	...	65	206	281	2.254182e-06	7.144024e-06	9.745004e-06	-5.011218e+00	...	5	28779097	...	1.737372e-07
TCGA-39-5039-01A-01D-1441-08	193	192	1	144	5.181347e-03	coding only	1	28835288	...	48	143	193	1.664627e-06	4.959201e-06	6.693188e-06	-5.174367e+00	...	1	28779097	...	3.474744e-08
TCGA-43-2578-01A-01D-1522-08	351	346	5	265	1.424501e-02	coding only	1	28835288	...	81	264	351	2.809058e-06	9.155449e-06	1.217259e-05	-4.914617e+00	...	1	28779097	...	3.474744e-08
TCGA-43-3394-01A-01D-0983-08	175	174	1	138	5.714286e-03	coding only	1	28835288	...	36	130	175	1.248470e-06	4.508365e-06	6.068953e-06	-5.216886e+00	...	8	28779097	...	2.779795e-07
TCGA-43-3920-01A-01D-0983-08	350	346	4	262	1.142857e-02	coding only	1	28835288	...	84	257	350	2.913097e-06	8.912691e-06	1.213791e-05	-4.915856e+00	...	5	28779097	...	1.737372e-07
TCGA-43-5668-01A-01D-1632-08	712	705	7	543	9.831461e-03	coding only	1	28835288	...	162	536	712	5.618116e-06	1.858834e-05	2.469197e-05	-4.607444e+00	...	7	28779097	...	2.432321e-07
TCGA-43-6143-01A-11D-1817-08	367	363	4	283	1.089918e-02	coding only	1	28835288	...	80	268	367	2.774378e-06	9.294168e-06	1.272746e-05	-4.895258e+00	...	14	28779097	...	4.864642e-07
TCGA-43-6647-01A-11D-1817-08	195	190	5	146	2.564103e-02	coding only	1	28835288	...	44	146	195	1.525908e-06	5.063241e-06	6.762547e-06	-5.169890e+00	...	0	28779097	...	0
TCGA-43-6770-01A-11D-1817-08	255	250	5	190	1.960784e-02	coding only	1	28835288	...	60	187	255	2.080784e-06	6.485109e-06	8.843331e-06	-5.053384e+00	...	3	28779097	...	1.042423e-07
TCGA-43-6771-01A-11D-1817-08	216	215	1	172	4.629630e-03	coding only	1	28835288	...	43	172	216	1.491228e-06	5.964914e-06	7.490822e-06	-5.125471e+00	...	0	28779097	...	0
TCGA-46-3765-01A-01D-0983-08	375	372	3	287	8.000000e-03	coding only	1	28835288	...	85	285	375	2.947777e-06	9.883723e-06	1.300490e-05	-4.885893e+00	...	2	28779097	...	6.949488e-08
TCGA-46-3766-01A-01D-0983-08	2	2	0	2	0	coding only	1	28835288	...	0	0	1	0	0	3.467973e-08	-7.459924e+00	...	1	28779097	...	3.474744e-08
TCGA-46-3767-01A-01D-0983-08	238	237	1	175	4.201681e-03	coding only	1	28835288	...	62	173	238	2.150143e-06	5.999593e-06	8.253776e-06	-5.083347e+00	...	2	28779097	...	6.949488e-08
TCGA-46-3768-01A-01D-0983-08	402	392	10	289	2.487562e-02	coding only	1	28835288	...	103	274	402	3.572012e-06	9.502246e-06	1.394125e-05	-4.855698e+00	...	15	28779097	...	5.212116e-07
TCGA-46-3769-01A-01D-0983-08	1005	999	6	739	5.970149e-03	coding only	1	28835288	...	260	732	1005	9.016730e-06	2.538556e-05	3.485313e-05	-4.457758e+00	...	7	28779097	...	2.432321e-07
TCGA-46-6025-01A-11D-1817-08	217	215	2	170	9.216590e-03	coding only	1	28835288	...	45	167	217	1.560588e-06	5.791515e-06	7.525501e-06	-5.123465e+00	...	3	28779097	...	1.042423e-07
TCGA-46-6026-01A-11D-1817-08	239	238	1	185	4.184100e-03	coding only	1	28835288	...	53	178	239	1.838026e-06	6.172992e-06	8.288455e-06	-5.081526e+00	...	6	28779097	...	2.084847e-07
TCGA-51-4079-01A-01D-1458-08	425	419	6	327	1.411765e-02	coding only	1	28835288	...	92	321	425	3.190535e-06	1.113219e-05	1.473889e-05	-4.831535e+00	...	6	28779097	...	2.084847e-07
TCGA-51-4080-01A-01D-1458-08	316	311	5	247	1.582278e-02	coding only	1	28835288	...	64	238	316	2.219503e-06	8.253776e-06	1.095879e-05	-4.960237e+00	...	9	28779097	...	3.127270e-07
TCGA-51-4081-01A-01D-1458-08	228	226	2	175	8.771930e-03	coding only	1	28835288	...	51	171	228	1.768666e-06	5.930234e-06	7.906978e-06	-5.101989e+00	...	4	28779097	...	1.389898e-07
TCGA-56-1622-01A-01D-1521-08	244	240	4	175	1.639344e-02	coding only	1	28835288	...	65	172	244	2.254182e-06	5.964914e-06	8.461854e-06	-5.072534e+00	...	3	28779097	...	1.042423e-07
TCGA-56-5897-01A-11D-1632-08	127	127	0	94	0	coding only	1	28835288	...	33	94	127	1.144431e-06	3.259895e-06	4.404326e-06	-5.356121e+00	...	0	28779097	...	0
TCGA-56-5898-01A-11D-1632-08	169	167	2	128	1.183432e-02	coding only	1	28835288	...	39	126	169	1.352509e-06	4.369646e-06	5.860874e-06	-5.232038e+00	...	2	28779097	...	6.949488e-08
TCGA-56-6545-01A-11D-1817-08	323	322	1	256	3.095975e-03	coding only	1	28835288	...	66	256	323	2.288862e-06	8.878011e-06	1.120155e-05	-4.950722e+00	...	0	28779097	...	0
TCGA-56-6546-01A-11D-1817-08	368	356	12	273	3.260870e-02	exome+100bp flanks	2	35791301	...	83	273	368	2.318999e-06	7.627552e-06	1.028183e-05	-4.987930e+00	...	0	32078718	...	0
TCGA-60-2698-01A-01D-1522-08	1377	1361	16	1052	1.161946e-02	coding only	1	28835288	...	309	1045	1377	1.071604e-05	3.624032e-05	4.775399e-05	-4.320990e+00	...	7	28779097	...	2.432321e-07
TCGA-60-2707-01A-01D-1522-08	142	140	2	106	1.408451e-02	coding only	1	28835288	...	34	105	142	1.179111e-06	3.641372e-06	4.924522e-06	-5.307636e+00	...	1	28779097	...	3.474744e-08
TCGA-60-2708-01A-01D-1522-08	232	228	4	171	1.724138e-02	coding only	1	28835288	...	57	167	232	1.976745e-06	5.791515e-06	8.045697e-06	-5.094436e+00	...	4	28779097	...	1.389898e-07
TCGA-60-2709-01A-21D-1817-08	218	212	6	156	2.752294e-02	coding only	1	28835288	...	56	156	218	1.942065e-06	5.410038e-06	7.560181e-06	-5.121468e+00	...	0	28779097	...	0
TCGA-60-2710-01A-01D-1522-08	228	223	5	177	2.192982e-02	coding only	1	28835288	...	46	174	228	1.595268e-06	6.034273e-06	7.906978e-06	-5.101989e+00	...	3	28779097	...	1.042423e-07
TCGA-60-2711-01A-01D-1522-08	149	148	1	100	6.711409e-03	coding only	1	28835288	...	47	99	148	1.629947e-06	3.433293e-06	5.132600e-06	-5.289663e+00	...	1	28779097	...	3.474744e-08
TCGA-60-2712-01A-01D-1522-08	99	99	0	76	0	coding only	1	28835288	...	23	71	99	7.976338e-07	2.462261e-06	3.433293e-06	-5.464289e+00	...	5	28779097	...	1.737372e-07
TCGA-60-2713-01A-01D-1522-08	283	282	1	214	3.533569e-03	coding only	1	28835288	...	68	210	283	2.358222e-06	7.282743e-06	9.814364e-06	-5.008138e+00	...	4	28779097	...	1.389898e-07
TCGA-60-2715-01A-01D-1522-08	191	190	1	142	5.235602e-03	coding only	1	28835288	...	48	142	191	1.664627e-06	4.924522e-06	6.623828e-06	-5.178891e+00	...	0	28779097	...	0
TCGA-60-2719-01A-01D-1522-08	222	220	2	164	9.009009e-03	coding only	1	28835288	...	56	161	222	1.942065e-06	5.583437e-06	7.698900e-06	-5.113571e+00	...	3	28779097	...	1.042423e-07
TCGA-60-2720-01A-01D-1522-08	456	449	7	361	1.535088e-02	coding only	1	28835288	...	88	360	456	3.051816e-06	1.248470e-05	1.581396e-05	-4.800959e+00	...	0	28779097	...	0
TCGA-60-2721-01A-01D-1522-08	95	94	1	70	1.052632e-02	coding only	1	28835288	...	24	70	95	8.323135e-07	2.427581e-06	3.294574e-06	-5.482201e+00	...	0	28779097	...	0
TCGA-60-2722-01A-01D-1522-08	355	348	7	277	1.971831e-02	coding only	1	28835288	...	71	271	355	2.462261e-06	9.398207e-06	1.231130e-05	-4.909696e+00	...	6	28779097	...	2.084847e-07
TCGA-60-2723-01A-01D-1522-08	306	303	3	238	9.803922e-03	coding only	1	28835288	...	65	235	306	2.254182e-06	8.149737e-06	1.061200e-05	-4.974203e+00	...	3	28779097	...	1.042423e-07
TCGA-60-2724-01A-01D-1522-08	351	348	3	272	8.547009e-03	coding only	1	28835288	...	76	269	351	2.635659e-06	9.328847e-06	1.217259e-05	-4.914617e+00	...	2	28779097	...	6.949488e-08
TCGA-60-2725-01A-01D-1267-08	185	183	2	133	1.081081e-02	coding only	1	28835288	...	50	132	185	1.733986e-06	4.577724e-06	6.415750e-06	-5.192753e+00	...	1	28779097	...	3.474744e-08
TCGA-60-2726-01A-01D-1522-08	327	322	5	238	1.529052e-02	coding only	1	28835288	...	84	237	327	2.913097e-06	8.219096e-06	1.134027e-05	-4.945377e+00	...	1	28779097	...	3.474744e-08
TCGA-63-5128-01A-01D-1441-08	343	342	1	269	2.915452e-03	coding only	1	28835288	...	73	257	343	2.531620e-06	8.912691e-06	1.189515e-05	-4.924630e+00	...	12	28779097	...	4.169693e-07
TCGA-63-5131-01A-01D-1441-08	314	310	4	254	1.273885e-02	coding only	1	28835288	...	56	250	314	1.942065e-06	8.669932e-06	1.088944e-05	-4.962995e+00	...	4	28779097	...	1.389898e-07
TCGA-63-6202-01A-11D-1817-08	385	374	11	297	2.857143e-02	coding only	1	28835288	...	77	294	384	2.670339e-06	1.019584e-05	1.331702e-05	-4.875593e+00	...	3	28779097	...	1.042423e-07
TCGA-66-2727-01A-01D-0983-08	266	264	2	196	7.518797e-03	coding only	1	28835288	...	68	194	266	2.358222e-06	6.727868e-06	9.224808e-06	-5.035043e+00	...	2	28779097	...	6.949488e-08
TCGA-66-2734-01A-01D-0983-08	326	323	3	252	9.202454e-03	coding only	1	28835288	...	71	252	326	2.462261e-06	8.739292e-06	1.130559e-05	-4.946707e+00	...	0	28779097	...	0
TCGA-66-2742-01A-01D-0983-08	248	246	2	185	8.064516e-03	coding only	1	28835288	...	61	181	248	2.115464e-06	6.277031e-06	8.600573e-06	-5.065473e+00	...	4	28779097	...	1.389898e-07
TCGA-66-2744-01A-01D-0983-08	288	286	2	224	6.944444e-03	coding only	1	28835288	...	62	217	287	2.150143e-06	7.525501e-06	9.953082e-06	-5.002042e+00	...	6	28779097	...	2.084847e-07
TCGA-66-2754-01A-01D-0983-08	347	341	6	262	1.729107e-02	coding only	1	28835288	...	79	256	347	2.739699e-06	8.878011e-06	1.203387e-05	-4.919595e+00	...	6	28779097	...	2.084847e-07
TCGA-66-2755-01A-01D-1522-08	228	226	2	170	8.771930e-03	coding only	1	28835288	...	56	169	228	1.942065e-06	5.860874e-06	7.906978e-06	-5.101989e+00	...	1	28779097	...	3.474744e-08
TCGA-66-2756-01A-01D-1522-08	538	535	3	427	5.576208e-03	coding only	1	28835288	...	108	421	538	3.745411e-06	1.460017e-05	1.865769e-05	-4.729142e+00	...	6	28779097	...	2.084847e-07
TCGA-66-2757-01A-01D-1522-08	284	280	4	220	1.408451e-02	coding only	1	28835288	...	60	213	284	2.080784e-06	7.386782e-06	9.849043e-06	-5.006606e+00	...	7	28779097	...	2.432321e-07
TCGA-66-2758-01A-02D-1522-08	383	376	7	280	1.827676e-02	coding only	1	28835288	...	96	275	383	3.329254e-06	9.536926e-06	1.328234e-05	-4.876726e+00	...	5	28779097	...	1.737372e-07
TCGA-66-2759-01A-01D-1522-08	498	492	6	378	1.204819e-02	coding only	1	28835288	...	114	372	498	3.953489e-06	1.290086e-05	1.727051e-05	-4.762695e+00	...	6	28779097	...	2.084847e-07
TCGA-66-2763-01A-01D-1522-08	445	439	6	348	1.348315e-02	coding only	1	28835288	...	91	341	445	3.155855e-06	1.182579e-05	1.543248e-05	-4.811564e+00	...	7	28779097	...	2.432321e-07
TCGA-66-2765-01A-01D-1522-08	112	111	1	89	8.928571e-03	coding only	1	28835288	...	22	88	112	7.629541e-07	3.051816e-06	3.884130e-06	-5.410706e+00	...	1	28779097	...	3.474744e-08
TCGA-66-2766-01A-01D-1522-08	434	430	4	321	9.216590e-03	coding only	1	28835288	...	109	314	434	3.780091e-06	1.088944e-05	1.505100e-05	-4.822435e+00	...	7	28779097	...	2.432321e-07
TCGA-66-2767-01A-01D-1522-08	387	380	7	293	1.808786e-02	coding only	1	28835288	...	87	289	387	3.017137e-06	1.002244e-05	1.342106e-05	-4.872213e+00	...	4	28779097	...	1.389898e-07
TCGA-66-2768-01A-01D-1522-08	292	285	7	222	2.397260e-02	coding only	1	28835288	...	63	217	292	2.184823e-06	7.525501e-06	1.012648e-05	-4.994541e+00	...	5	28779097	...	1.737372e-07
TCGA-66-2770-01A-01D-1522-08	269	266	3	190	1.115242e-02	coding only	1	28835288	...	76	187	269	2.635659e-06	6.485109e-06	9.328847e-06	-5.030172e+00	...	2	28779097	...	6.949488e-08
TCGA-66-2771-01A-01D-0983-08	297	292	5	219	1.683502e-02	coding only	1	28835288	...	73	216	297	2.531620e-06	7.490822e-06	1.029988e-05	-4.987168e+00	...	3	28779097	...	1.042423e-07
TCGA-66-2773-01A-01D-1267-08	676	672	4	493	5.917160e-03	coding only	1	28835288	...	179	491	675	6.207672e-06	1.702775e-05	2.340882e-05	-4.630621e+00	...	1	28779097	...	3.474744e-08
TCGA-66-2777-01A-01D-1267-08	221	218	3	159	1.357466e-02	coding only	1	28835288	...	59	159	221	2.046104e-06	5.514077e-06	7.664220e-06	-5.115532e+00	...	0	28779097	...	0
TCGA-66-2778-01A-02D-1522-08	169	165	4	117	2.366864e-02	coding only	1	28835288	...	48	117	169	1.664627e-06	4.057528e-06	5.860874e-06	-5.232038e+00	...	0	28779097	...	0
TCGA-66-2780-01A-01D-1522-08	143	143	0	107	0	coding only	1	28835288	...	36	105	143	1.248470e-06	3.641372e-06	4.959201e-06	-5.304588e+00	...	2	28779097	...	6.949488e-08
TCGA-66-2781-01A-01D-1522-08	166	166	0	132	0	coding only	1	28835288	...	34	130	166	1.179111e-06	4.508365e-06	5.756835e-06	-5.239816e+00	...	2	28779097	...	6.949488e-08
TCGA-66-2782-01A-01D-1522-08	389	387	2	291	5.141388e-03	coding only	1	28835288	...	96	291	389	3.329254e-06	1.009180e-05	1.349041e-05	-4.869975e+00	...	0	28779097	...	0
TCGA-66-2783-01A-01D-1267-08	271	267	4	212	1.476015e-02	coding only	1	28835288	...	55	211	271	1.907385e-06	7.317423e-06	9.398207e-06	-5.026955e+00	...	1	28779097	...	3.474744e-08
TCGA-66-2785-01A-01D-1522-08	1318	1309	9	1050	6.828528e-03	coding only	1	28835288	...	259	1043	1318	8.982050e-06	3.617096e-05	4.570788e-05	-4.340009e+00	...	7	28779097	...	2.432321e-07
TCGA-66-2786-01A-01D-1522-08	265	261	4	207	1.509434e-02	coding only	1	28835288	...	54	204	265	1.872705e-06	7.074665e-06	9.190128e-06	-5.036678e+00	...	3	28779097	...	1.042423e-07
TCGA-66-2787-01A-01D-0983-08	579	567	12	470	2.072539e-02	coding only	1	28835288	...	97	465	579	3.363934e-06	1.612607e-05	2.007956e-05	-4.697246e+00	...	5	28779097	...	1.737372e-07
TCGA-66-2788-01A-01D-0983-08	221	219	2	172	9.049774e-03	coding only	1	28835288	...	47	169	221	1.629947e-06	5.860874e-06	7.664220e-06	-5.115532e+00	...	3	28779097	...	1.042423e-07
TCGA-66-2789-01A-01D-0983-08	396	389	7	294	1.767677e-02	coding only	1	28835288	...	95	287	395	3.294574e-06	9.953082e-06	1.369849e-05	-4.863327e+00	...	5	28779097	...	1.737372e-07
TCGA-66-2791-01A-01D-0983-08	383	379	4	287	1.044386e-02	coding only	1	28835288	...	92	281	383	3.190535e-06	9.745004e-06	1.328234e-05	-4.876726e+00	...	6	28779097	...	2.084847e-07
TCGA-66-2792-01A-01D-0983-08	193	191	2	141	1.036269e-02	coding only	1	28835288	...	50	136	193	1.733986e-06	4.716443e-06	6.693188e-06	-5.174367e+00	...	5	28779097	...	1.737372e-07
TCGA-66-2793-01A-01D-1267-08	350	347	3	273	8.571429e-03	coding only	1	28835288	...	74	262	349	2.566300e-06	9.086089e-06	1.210323e-05	-4.917099e+00	...	10	28779097	...	3.474744e-07
TCGA-66-2794-01A-01D-1267-08	177	174	3	137	1.694915e-02	coding only	1	28835288	...	37	136	177	1.283150e-06	4.716443e-06	6.138312e-06	-5.211951e+00	...	1	28779097	...	3.474744e-08
TCGA-66-2795-01A-02D-0983-08	415	410	5	315	1.204819e-02	coding only	1	28835288	...	95	309	415	3.294574e-06	1.071604e-05	1.439209e-05	-4.841876e+00	...	6	28779097	...	2.084847e-07
TCGA-66-2800-01A-01D-1267-08	266	263	3	199	1.127820e-02	coding only	1	28835288	...	64	197	266	2.219503e-06	6.831907e-06	9.224808e-06	-5.035043e+00	...	2	28779097	...	6.949488e-08
TCGA-70-6722-01A-11D-1817-08	313	310	3	249	9.584665e-03	coding only	1	28835288	...	61	245	313	2.115464e-06	8.496534e-06	1.085476e-05	-4.964380e+00	...	4	28779097	...	1.389898e-07
TCGA-70-6723-01A-11D-1817-08	131	130	1	102	7.633588e-03	coding only	1	28835288	...	28	98	131	9.710324e-07	3.398614e-06	4.543045e-06	-5.342653e+00	...	4	28779097	...	1.389898e-07
TCGA-85-6175-01A-11D-1817-08	63	59	4	43	6.349206e-02	coding only	1	28835288	...	16	42	63	5.548757e-07	1.456549e-06	2.184823e-06	-5.660584e+00	...	1	28779097	...	3.474744e-08
TCGA-85-6560-01A-11D-1817-08	486	478	8	387	1.646091e-02	coding only	1	28835288	...	91	380	486	3.155855e-06	1.317830e-05	1.685435e-05	-4.773288e+00	...	7	28779097	...	2.432321e-07
TCGA-85-6561-01A-11D-1817-08	970	963	7	714	7.216495e-03	coding only	1	28835288	...	248	712	969	8.600573e-06	2.469197e-05	3.360466e-05	-4.473601e+00	...	2	28779097	...	6.949488e-08
