Classifier directory BuiltClassifiers created under CHASM/BuiltClassifiers
/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_CHASM/broadinstitute.org/cancer.genome.analysis/10194/33/CHASM/snvGetTranscriptList
Generating set of 5000 Passenger Mutations
Passenger generation complete
Generating set of 5000 Null Mutations
Null generation complete
Retrieving features for training set from SNVBox
Data retrieval took 569.943845034s

Training set features stored in Train.arff
Retrieving features for null set from SNVBox
Data retrieval took 308.620579004s

Null set features stored in Null.arff
Training Random Forest Classifier
Trainset classification error is  12.86% of    9946 (kappa: 0.7416 )



Classisfier training time: 688.181479931

Classifier training complete
/xchip/cga/gdac-prod/tcga-gdac/jobResults/PREPROCESSCHASM/COAD-TP/22596983/mutationslist.arff
Data retrieval took 6888.78555703s

Features retrieved for input mutations as .arff file
Output file generated
/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CHASM/COAD-TP/22623031
/xchip/cga/gdac-prod/tcga-gdac/jobResults/PREPROCESSCHASM/COAD-TP/22596983
