[1] "ofn"       "-oTGBM-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBM-TP/22555065/GBM-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/22538153/transformed.cor.cli.txt"

nPatients in clinical file=599, in cluster file=577, common to both=577
[1]  68 577
[1] "AMP PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                            92                            485 
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                            92                            485 
[1] "AMP PEAK  2(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                          160                           417 
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                          160                           417 
[1] "AMP PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                         99                         478 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                         99                         478 
[1] "AMP PEAK  4(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE 
                           49                           528 
  AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE 
                           49                           528 
[1] "AMP PEAK  5(3Q26.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE 
                           111                            466 
  AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE 
                           111                            466 
[1] "AMP PEAK  6(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                           48                           529 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                           48                           529 
[1] "AMP PEAK  7(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE 
                        108                         469 
  AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE 
                        108                         469 
[1] "AMP PEAK  8(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                          507                            70 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                          507                            70 
[1] "AMP PEAK  9(7Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE 
                           464                            113 
  AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE 
                           464                            113 
[1] "AMP PEAK 10(7Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE 
                          480                            97 
  AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE 
                          480                            97 
[1] "AMP PEAK 11(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE 
                          473                           104 
  AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE 
                          473                           104 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            69                            508 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            69                            508 
[1] "AMP PEAK 13(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE 
                          31                          546 
  AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE 
                          31                          546 
[1] "AMP PEAK 14(12P13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE 
                             84                             493 
  AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE 
                             84                             493 
[1] "AMP PEAK 15(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE 
                           134                            443 
  AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE 
                           134                            443 
[1] "AMP PEAK 16(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          93                          484 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          93                          484 
[1] "AMP PEAK 17(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE 
                          32                          545 
  AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE 
                          32                          545 
[1] "AMP PEAK 18(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE 
                          30                          547 
  AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE 
                          30                          547 
[1] "AMP PEAK 19(14Q32.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE 
                             36                             541 
  AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE 
                             36                             541 
[1] "AMP PEAK 20(17P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE 
                            51                            526 
  AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE 
                            51                            526 
[1] "AMP PEAK 21(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE 
                            84                            493 
  AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE 
                            84                            493 
[1] "AMP PEAK 22(19P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE 
                           246                            331 
  AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE 
                           246                            331 
[1] "AMP PEAK 23(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE 
                         216                          361 
  AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE 
                         216                          361 
[1] "AMP PEAK 24(21Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE 
                            70                            507 
  AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE 
                            70                            507 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           100                            477 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           100                            477 
[1] "DEL PEAK  2(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           135                            442 
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           135                            442 
[1] "DEL PEAK  3(1P32.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                           61                           516 
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                           61                           516 
[1] "DEL PEAK  4(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                           48                           529 
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                           48                           529 
[1] "DEL PEAK  5(1Q42.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            51                            526 
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            51                            526 
[1] "DEL PEAK  6(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         35                         542 
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         35                         542 
[1] "DEL PEAK  7(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           47                           530 
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           47                           530 
[1] "DEL PEAK  8(2Q37.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                           55                           522 
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                           55                           522 
[1] "DEL PEAK  9(3P21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE 
                           54                           523 
  DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE 
                           54                           523 
[1] "DEL PEAK 10(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            56                            521 
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            56                            521 
[1] "DEL PEAK 11(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                         65                         512 
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                         65                         512 
[1] "DEL PEAK 12(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(4P16.3) MUTATED DEL PEAK 12(4P16.3) WILD-TYPE 
                           78                           499 
  DEL PEAK 12(4P16.3) MUTATED DEL PEAK 12(4P16.3) WILD-TYPE 
                           78                           499 
[1] "DEL PEAK 13(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE 
                           93                           484 
  DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE 
                           93                           484 
[1] "DEL PEAK 14(5Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                         70                         507 
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                         70                         507 
[1] "DEL PEAK 15(6Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(6Q22.1) MUTATED DEL PEAK 15(6Q22.1) WILD-TYPE 
                          155                           422 
  DEL PEAK 15(6Q22.1) MUTATED DEL PEAK 15(6Q22.1) WILD-TYPE 
                          155                           422 
[1] "DEL PEAK 16(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE 
                        179                         398 
  DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE 
                        179                         398 
[1] "DEL PEAK 17(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE 
                           66                           511 
  DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE 
                           66                           511 
[1] "DEL PEAK 18(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                          421                           156 
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                          421                           156 
[1] "DEL PEAK 19(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                           79                           498 
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                           79                           498 
[1] "DEL PEAK 20(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE 
                           470                            107 
  DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE 
                           470                            107 
[1] "DEL PEAK 21(10P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10P13) MUTATED DEL PEAK 21(10P13) WILD-TYPE 
                         471                          106 
  DEL PEAK 21(10P13) MUTATED DEL PEAK 21(10P13) WILD-TYPE 
                         471                          106 
[1] "DEL PEAK 22(10P11.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(10P11.23) MUTATED DEL PEAK 22(10P11.23) WILD-TYPE 
                            476                             101 
  DEL PEAK 22(10P11.23) MUTATED DEL PEAK 22(10P11.23) WILD-TYPE 
                            476                             101 
[1] "DEL PEAK 23(10Q11.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10Q11.23) MUTATED DEL PEAK 23(10Q11.23) WILD-TYPE 
                            489                              88 
  DEL PEAK 23(10Q11.23) MUTATED DEL PEAK 23(10Q11.23) WILD-TYPE 
                            489                              88 
[1] "DEL PEAK 24(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            514                              63 
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            514                              63 
[1] "DEL PEAK 25(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                           515                             62 
  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                           515                             62 
[1] "DEL PEAK 26(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                           132                            445 
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                           132                            445 
[1] "DEL PEAK 27(11P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                           105                            472 
  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                           105                            472 
[1] "DEL PEAK 28(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE 
                            96                            481 
  DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE 
                            96                            481 
[1] "DEL PEAK 29(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE 
                            72                            505 
  DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE 
                            72                            505 
[1] "DEL PEAK 30(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                          77                          500 
  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                          77                          500 
[1] "DEL PEAK 31(12Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE 
                          79                          498 
  DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE 
                          79                          498 
[1] "DEL PEAK 32(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                           241                            336 
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                           241                            336 
[1] "DEL PEAK 33(13Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE 
                           230                            347 
  DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE 
                           230                            347 
[1] "DEL PEAK 34(14Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE 
                           178                            399 
  DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE 
                           178                            399 
[1] "DEL PEAK 35(14Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE 
                           173                            404 
  DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE 
                           173                            404 
[1] "DEL PEAK 36(15Q14) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                         154                          423 
  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                         154                          423 
[1] "DEL PEAK 37(16P12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                            92                            485 
  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                            92                            485 
[1] "DEL PEAK 38(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                           101                            476 
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                           101                            476 
[1] "DEL PEAK 39(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE 
                            98                            479 
  DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE 
                            98                            479 
[1] "DEL PEAK 40(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                            72                            505 
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                            72                            505 
[1] "DEL PEAK 41(18Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(18Q22.3) MUTATED DEL PEAK 41(18Q22.3) WILD-TYPE 
                            82                            495 
  DEL PEAK 41(18Q22.3) MUTATED DEL PEAK 41(18Q22.3) WILD-TYPE 
                            82                            495 
[1] "DEL PEAK 42(19Q13.41) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE 
                            100                             477 
  DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE 
                            100                             477 
[1] "DEL PEAK 43(21Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(21Q21.1) MUTATED DEL PEAK 43(21Q21.1) WILD-TYPE 
                            56                            521 
  DEL PEAK 43(21Q21.1) MUTATED DEL PEAK 43(21Q21.1) WILD-TYPE 
                            56                            521 
[1] "DEL PEAK 44(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                            212                             365 
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                            212                             365 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL"

Input Data has 10 rows and 577 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIR_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIR_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 577 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIR_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIR_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P36.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED       27     21     18     17
  AMP PEAK  1(1P36.21) WILD-TYPE    131     75    119    100
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           27                            131
  CLUS_2                           21                             75
  CLUS_3                           18                            119
  CLUS_4                           17                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED       25     15     12     31
  AMP PEAK  1(1P36.21) WILD-TYPE    123     87     88    127
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           25                            123
  CLUS_2                           15                             87
  CLUS_3                           12                             88
  CLUS_4                           31                            127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED       21     38     12     18
  AMP PEAK  1(1P36.21) WILD-TYPE    122    149     78    108
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           21                            122
  CLUS_2                           38                            149
  CLUS_3                           12                             78
  CLUS_4                           18                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED       46     15     28
  AMP PEAK  1(1P36.21) WILD-TYPE    247    109    101
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           46                            247
  CLUS_2                           15                            109
  CLUS_3                           28                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED       35     48      9
  AMP PEAK  1(1P36.21) WILD-TYPE    220    149    116
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           35                            220
  CLUS_2                           48                            149
  CLUS_3                            9                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED       10      6     16     12
  AMP PEAK  1(1P36.21) WILD-TYPE     60     36     65     70
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           10                             60
  CLUS_2                            6                             36
  CLUS_3                           16                             65
  CLUS_4                           12                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P36.21) MUTATED        4      6      4      9      8
  AMP PEAK  1(1P36.21) WILD-TYPE     40     51     40     21     37
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            4                             40
  CLUS_2                            6                             51
  CLUS_3                            4                             40
  CLUS_4                            9                             21
  CLUS_5                            8                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED        8     12     11
  AMP PEAK  1(1P36.21) WILD-TYPE     82     58     49
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            8                             82
  CLUS_2                           12                             58
  CLUS_3                           11                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED        4     21      3
  AMP PEAK  1(1P36.21) WILD-TYPE     41     47     31
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            4                             41
  CLUS_2                           21                             47
  CLUS_3                            3                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED        2     24      2
  AMP PEAK  1(1P36.21) WILD-TYPE     28     68     23
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                           24                             68
  CLUS_3                            2                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       40     30     38     32
  AMP PEAK  2(1Q32.1) WILD-TYPE    118     66     99     85
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          40                           118
  CLUS_2                          30                            66
  CLUS_3                          38                            99
  CLUS_4                          32                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       37     22     25     56
  AMP PEAK  2(1Q32.1) WILD-TYPE    111     80     75    102
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          37                           111
  CLUS_2                          22                            80
  CLUS_3                          25                            75
  CLUS_4                          56                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       31     54     28     38
  AMP PEAK  2(1Q32.1) WILD-TYPE    112    133     62     88
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          31                           112
  CLUS_2                          54                           133
  CLUS_3                          28                            62
  CLUS_4                          38                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       85     26     40
  AMP PEAK  2(1Q32.1) WILD-TYPE    208     98     89
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          85                           208
  CLUS_2                          26                            98
  CLUS_3                          40                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       62     71     27
  AMP PEAK  2(1Q32.1) WILD-TYPE    193    126     98
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          62                           193
  CLUS_2                          71                           126
  CLUS_3                          27                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       17      7     25     30
  AMP PEAK  2(1Q32.1) WILD-TYPE     53     35     56     52
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          17                            53
  CLUS_2                           7                            35
  CLUS_3                          25                            56
  CLUS_4                          30                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.1) MUTATED        9     11     15     12     16
  AMP PEAK  2(1Q32.1) WILD-TYPE     35     46     29     18     29
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           9                            35
  CLUS_2                          11                            46
  CLUS_3                          15                            29
  CLUS_4                          12                            18
  CLUS_5                          16                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       21     23     19
  AMP PEAK  2(1Q32.1) WILD-TYPE     69     47     41
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          21                            69
  CLUS_2                          23                            47
  CLUS_3                          19                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        9     21      9
  AMP PEAK  2(1Q32.1) WILD-TYPE     36     47     25
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           9                            36
  CLUS_2                          21                            47
  CLUS_3                           9                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        4     30      5
  AMP PEAK  2(1Q32.1) WILD-TYPE     26     62     20
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                          30                            62
  CLUS_3                           5                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       23     25     22     20
  AMP PEAK  3(1Q44) WILD-TYPE    135     71    115     97
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        23                         135
  CLUS_2                        25                          71
  CLUS_3                        22                         115
  CLUS_4                        20                          97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       25     21     14     30
  AMP PEAK  3(1Q44) WILD-TYPE    123     81     86    128
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        25                         123
  CLUS_2                        21                          81
  CLUS_3                        14                          86
  CLUS_4                        30                         128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       19     36     14     26
  AMP PEAK  3(1Q44) WILD-TYPE    124    151     76    100
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        19                         124
  CLUS_2                        36                         151
  CLUS_3                        14                          76
  CLUS_4                        26                         100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       54     16     25
  AMP PEAK  3(1Q44) WILD-TYPE    239    108    104
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        54                         239
  CLUS_2                        16                         108
  CLUS_3                        25                         104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       37     53      9
  AMP PEAK  3(1Q44) WILD-TYPE    218    144    116
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        37                         218
  CLUS_2                        53                         144
  CLUS_3                         9                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED        9      4     16     18
  AMP PEAK  3(1Q44) WILD-TYPE     61     38     65     64
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         9                          61
  CLUS_2                         4                          38
  CLUS_3                        16                          65
  CLUS_4                        18                          64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED        3      7      6     11      7
  AMP PEAK  3(1Q44) WILD-TYPE     41     50     38     19     38
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         3                          41
  CLUS_2                         7                          50
  CLUS_3                         6                          38
  CLUS_4                        11                          19
  CLUS_5                         7                          38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       10     11     13
  AMP PEAK  3(1Q44) WILD-TYPE     80     59     47
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        10                          80
  CLUS_2                        11                          59
  CLUS_3                        13                          47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED        7     13      6
  AMP PEAK  3(1Q44) WILD-TYPE     38     55     28
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         7                          38
  CLUS_2                        13                          55
  CLUS_3                         6                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED        4     19      3
  AMP PEAK  3(1Q44) WILD-TYPE     26     73     22
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         4                          26
  CLUS_2                        19                          73
  CLUS_3                         3                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P24.3) MUTATED       11     13      7     14
  AMP PEAK  4(2P24.3) WILD-TYPE    147     83    130    103
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          11                           147
  CLUS_2                          13                            83
  CLUS_3                           7                           130
  CLUS_4                          14                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P24.3) MUTATED       11     17      4     13
  AMP PEAK  4(2P24.3) WILD-TYPE    137     85     96    145
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          11                           137
  CLUS_2                          17                            85
  CLUS_3                           4                            96
  CLUS_4                          13                           145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P24.3) MUTATED        9     20      8     11
  AMP PEAK  4(2P24.3) WILD-TYPE    134    167     82    115
D4V3, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           9                           134
  CLUS_2                          20                           167
  CLUS_3                           8                            82
  CLUS_4                          11                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED       27     10     11
  AMP PEAK  4(2P24.3) WILD-TYPE    266    114    118
D4V4, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          27                           266
  CLUS_2                          10                           114
  CLUS_3                          11                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED       26     17      6
  AMP PEAK  4(2P24.3) WILD-TYPE    229    180    119
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          26                           229
  CLUS_2                          17                           180
  CLUS_3                           6                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P24.3) MUTATED        3      2      6     15
  AMP PEAK  4(2P24.3) WILD-TYPE     67     40     75     67
D4V6, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           3                            67
  CLUS_2                           2                            40
  CLUS_3                           6                            75
  CLUS_4                          15                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2P24.3) MUTATED        3      4      8      5      4
  AMP PEAK  4(2P24.3) WILD-TYPE     41     53     36     25     41
D4V7, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           3                            41
  CLUS_2                           4                            53
  CLUS_3                           8                            36
  CLUS_4                           5                            25
  CLUS_5                           4                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED        5     13      6
  AMP PEAK  4(2P24.3) WILD-TYPE     85     57     54
D4V8, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           5                            85
  CLUS_2                          13                            57
  CLUS_3                           6                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED        5      7      3
  AMP PEAK  4(2P24.3) WILD-TYPE     40     61     31
D4V9, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           5                            40
  CLUS_2                           7                            61
  CLUS_3                           3                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED        3     11      1
  AMP PEAK  4(2P24.3) WILD-TYPE     27     81     24
D4V10, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                          11                            81
  CLUS_3                           1                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(3Q26.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.33) MUTATED       30     28     15     28
  AMP PEAK  5(3Q26.33) WILD-TYPE    128     68    122     89
D5V1, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           30                            128
  CLUS_2                           28                             68
  CLUS_3                           15                            122
  CLUS_4                           28                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.33) MUTATED       25     25     15     36
  AMP PEAK  5(3Q26.33) WILD-TYPE    123     77     85    122
D5V2, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           25                            123
  CLUS_2                           25                             77
  CLUS_3                           15                             85
  CLUS_4                           36                            122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.33) MUTATED       24     44     20     21
  AMP PEAK  5(3Q26.33) WILD-TYPE    119    143     70    105
D5V3, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           24                            119
  CLUS_2                           44                            143
  CLUS_3                           20                             70
  CLUS_4                           21                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.33) MUTATED       59     17     33
  AMP PEAK  5(3Q26.33) WILD-TYPE    234    107     96
D5V4, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           59                            234
  CLUS_2                           17                            107
  CLUS_3                           33                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.33) MUTATED       53     48     10
  AMP PEAK  5(3Q26.33) WILD-TYPE    202    149    115
D5V5, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           53                            202
  CLUS_2                           48                            149
  CLUS_3                           10                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.33) MUTATED        9      3     19     20
  AMP PEAK  5(3Q26.33) WILD-TYPE     61     39     62     62
D5V6, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                            9                             61
  CLUS_2                            3                             39
  CLUS_3                           19                             62
  CLUS_4                           20                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.33) MUTATED       10      5      6      9      8
  AMP PEAK  5(3Q26.33) WILD-TYPE     34     52     38     21     37
D5V7, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           10                             34
  CLUS_2                            5                             52
  CLUS_3                            6                             38
  CLUS_4                            9                             21
  CLUS_5                            8                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.33) MUTATED       16     11     11
  AMP PEAK  5(3Q26.33) WILD-TYPE     74     59     49
D5V8, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           16                             74
  CLUS_2                           11                             59
  CLUS_3                           11                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.33) MUTATED       14     16      5
  AMP PEAK  5(3Q26.33) WILD-TYPE     31     52     29
D5V9, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           14                             31
  CLUS_2                           16                             52
  CLUS_3                            5                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.33) MUTATED        9     21      5
  AMP PEAK  5(3Q26.33) WILD-TYPE     21     71     20
D5V10, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                           21                             71
  CLUS_3                            5                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4P16.3) MUTATED       11     12     13      6
  AMP PEAK  6(4P16.3) WILD-TYPE    147     84    124    111
D6V1, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          11                           147
  CLUS_2                          12                            84
  CLUS_3                          13                           124
  CLUS_4                           6                           111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4P16.3) MUTATED       10     10     10     12
  AMP PEAK  6(4P16.3) WILD-TYPE    138     92     90    146
D6V2, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          10                           138
  CLUS_2                          10                            92
  CLUS_3                          10                            90
  CLUS_4                          12                           146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4P16.3) MUTATED       13     19      7      8
  AMP PEAK  6(4P16.3) WILD-TYPE    130    168     83    118
D6V3, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          13                           130
  CLUS_2                          19                           168
  CLUS_3                           7                            83
  CLUS_4                           8                           118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P16.3) MUTATED       19     11     17
  AMP PEAK  6(4P16.3) WILD-TYPE    274    113    112
D6V4, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          19                           274
  CLUS_2                          11                           113
  CLUS_3                          17                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P16.3) MUTATED       21     16     11
  AMP PEAK  6(4P16.3) WILD-TYPE    234    181    114
D6V5, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          21                           234
  CLUS_2                          16                           181
  CLUS_3                          11                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4P16.3) MUTATED        8      4     11      7
  AMP PEAK  6(4P16.3) WILD-TYPE     62     38     70     75
D6V6, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           8                            62
  CLUS_2                           4                            38
  CLUS_3                          11                            70
  CLUS_4                           7                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4P16.3) MUTATED        7      4      2      3      3
  AMP PEAK  6(4P16.3) WILD-TYPE     37     53     42     27     42
D6V7, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           7                            37
  CLUS_2                           4                            53
  CLUS_3                           2                            42
  CLUS_4                           3                            27
  CLUS_5                           3                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P16.3) MUTATED        9      6      4
  AMP PEAK  6(4P16.3) WILD-TYPE     81     64     56
D6V8, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           9                            81
  CLUS_2                           6                            64
  CLUS_3                           4                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P16.3) MUTATED        5      7      4
  AMP PEAK  6(4P16.3) WILD-TYPE     40     61     30
D6V9, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           5                            40
  CLUS_2                           7                            61
  CLUS_3                           4                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P16.3) MUTATED        3     10      3
  AMP PEAK  6(4P16.3) WILD-TYPE     27     82     22
D6V10, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                          10                            82
  CLUS_3                           3                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4Q12) MUTATED       22     34     19     24
  AMP PEAK  7(4Q12) WILD-TYPE    136     62    118     93
D7V1, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        22                         136
  CLUS_2                        34                          62
  CLUS_3                        19                         118
  CLUS_4                        24                          93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4Q12) MUTATED       18     31     16     34
  AMP PEAK  7(4Q12) WILD-TYPE    130     71     84    124
D7V2, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        18                         130
  CLUS_2                        31                          71
  CLUS_3                        16                          84
  CLUS_4                        34                         124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4Q12) MUTATED       23     40     19     22
  AMP PEAK  7(4Q12) WILD-TYPE    120    147     71    104
D7V3, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        23                         120
  CLUS_2                        40                         147
  CLUS_3                        19                          71
  CLUS_4                        22                         104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED       60     19     25
  AMP PEAK  7(4Q12) WILD-TYPE    233    105    104
D7V4, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        60                         233
  CLUS_2                        19                         105
  CLUS_3                        25                         104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED       48     46     14
  AMP PEAK  7(4Q12) WILD-TYPE    207    151    111
D7V5, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        48                         207
  CLUS_2                        46                         151
  CLUS_3                        14                         111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4Q12) MUTATED        9      3     15     24
  AMP PEAK  7(4Q12) WILD-TYPE     61     39     66     58
D7V6, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         9                          61
  CLUS_2                         3                          39
  CLUS_3                        15                          66
  CLUS_4                        24                          58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4Q12) MUTATED        9     16      7      7      3
  AMP PEAK  7(4Q12) WILD-TYPE     35     41     37     23     42
D7V7, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         9                          35
  CLUS_2                        16                          41
  CLUS_3                         7                          37
  CLUS_4                         7                          23
  CLUS_5                         3                          42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED       21     12      9
  AMP PEAK  7(4Q12) WILD-TYPE     69     58     51
D7V8, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        21                          69
  CLUS_2                        12                          58
  CLUS_3                         9                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED       13     12      4
  AMP PEAK  7(4Q12) WILD-TYPE     32     56     30
D7V9, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        13                          32
  CLUS_2                        12                          56
  CLUS_3                         4                          30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED        8     18      3
  AMP PEAK  7(4Q12) WILD-TYPE     22     74     22
D7V10, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         8                          22
  CLUS_2                        18                          74
  CLUS_3                         3                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P11.2) MUTATED      150     69    132     92
  AMP PEAK  8(7P11.2) WILD-TYPE      8     27      5     25
D8V1, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         150                             8
  CLUS_2                          69                            27
  CLUS_3                         132                             5
  CLUS_4                          92                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P11.2) MUTATED      136     60     99    148
  AMP PEAK  8(7P11.2) WILD-TYPE     12     42      1     10
D8V2, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         136                            12
  CLUS_2                          60                            42
  CLUS_3                          99                             1
  CLUS_4                         148                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P11.2) MUTATED      139    151     74    116
  AMP PEAK  8(7P11.2) WILD-TYPE      4     36     16     10
D8V3, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         139                             4
  CLUS_2                         151                            36
  CLUS_3                          74                            16
  CLUS_4                         116                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED      234    120    126
  AMP PEAK  8(7P11.2) WILD-TYPE     59      4      3
D8V4, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         234                            59
  CLUS_2                         120                             4
  CLUS_3                         126                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED      190    192    125
  AMP PEAK  8(7P11.2) WILD-TYPE     65      5      0
D8V5, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         190                            65
  CLUS_2                         192                             5
  CLUS_3                         125                             0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P11.2) MUTATED       67     41     79     54
  AMP PEAK  8(7P11.2) WILD-TYPE      3      1      2     28
D8V6, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          67                             3
  CLUS_2                          41                             1
  CLUS_3                          79                             2
  CLUS_4                          54                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(7P11.2) MUTATED       43     51     32     26     44
  AMP PEAK  8(7P11.2) WILD-TYPE      1      6     12      4      1
D8V7, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          43                             1
  CLUS_2                          51                             6
  CLUS_3                          32                            12
  CLUS_4                          26                             4
  CLUS_5                          44                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED       84     52     60
  AMP PEAK  8(7P11.2) WILD-TYPE      6     18      0
D8V8, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          84                             6
  CLUS_2                          52                            18
  CLUS_3                          60                             0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED       32     67     32
  AMP PEAK  8(7P11.2) WILD-TYPE     13      1      2
D8V9, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          32                            13
  CLUS_2                          67                             1
  CLUS_3                          32                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED       17     90     24
  AMP PEAK  8(7P11.2) WILD-TYPE     13      2      1
D8V10, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          17                            13
  CLUS_2                          90                             2
  CLUS_3                          24                             1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(7Q11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7Q11.21) MUTATED      142     63    113     85
  AMP PEAK  9(7Q11.21) WILD-TYPE     16     33     24     32
D9V1, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          142                             16
  CLUS_2                           63                             33
  CLUS_3                          113                             24
  CLUS_4                           85                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7Q11.21) MUTATED      129     55     82    137
  AMP PEAK  9(7Q11.21) WILD-TYPE     19     47     18     21
D9V2, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          129                             19
  CLUS_2                           55                             47
  CLUS_3                           82                             18
  CLUS_4                          137                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7Q11.21) MUTATED      131    138     63    108
  AMP PEAK  9(7Q11.21) WILD-TYPE     12     49     27     18
D9V3, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          131                             12
  CLUS_2                          138                             49
  CLUS_3                           63                             27
  CLUS_4                          108                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q11.21) MUTATED      216    114    110
  AMP PEAK  9(7Q11.21) WILD-TYPE     77     10     19
D9V4, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          216                             77
  CLUS_2                          114                             10
  CLUS_3                          110                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q11.21) MUTATED      179    183    102
  AMP PEAK  9(7Q11.21) WILD-TYPE     76     14     23
D9V5, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          179                             76
  CLUS_2                          183                             14
  CLUS_3                          102                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7Q11.21) MUTATED       65     38     67     50
  AMP PEAK  9(7Q11.21) WILD-TYPE      5      4     14     32
D9V6, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           65                              5
  CLUS_2                           38                              4
  CLUS_3                           67                             14
  CLUS_4                           50                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7Q11.21) MUTATED       41     46     29     25     38
  AMP PEAK  9(7Q11.21) WILD-TYPE      3     11     15      5      7
D9V7, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           41                              3
  CLUS_2                           46                             11
  CLUS_3                           29                             15
  CLUS_4                           25                              5
  CLUS_5                           38                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q11.21) MUTATED       79     48     52
  AMP PEAK  9(7Q11.21) WILD-TYPE     11     22      8
D9V8, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           79                             11
  CLUS_2                           48                             22
  CLUS_3                           52                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q11.21) MUTATED       29     61     28
  AMP PEAK  9(7Q11.21) WILD-TYPE     16      7      6
D9V9, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           29                             16
  CLUS_2                           61                              7
  CLUS_3                           28                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q11.21) MUTATED       15     82     21
  AMP PEAK  9(7Q11.21) WILD-TYPE     15     10      4
D9V10, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           15                             15
  CLUS_2                           82                             10
  CLUS_3                           21                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q21.2) MUTATED      141     66    120     91
  AMP PEAK 10(7Q21.2) WILD-TYPE     17     30     17     26
D10V1, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         141                            17
  CLUS_2                          66                            30
  CLUS_3                         120                            17
  CLUS_4                          91                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q21.2) MUTATED      126     62     89    141
  AMP PEAK 10(7Q21.2) WILD-TYPE     22     40     11     17
D10V2, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         126                            22
  CLUS_2                          62                            40
  CLUS_3                          89                            11
  CLUS_4                         141                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q21.2) MUTATED      127    147     71    107
  AMP PEAK 10(7Q21.2) WILD-TYPE     16     40     19     19
D10V3, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         127                            16
  CLUS_2                         147                            40
  CLUS_3                          71                            19
  CLUS_4                         107                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q21.2) MUTATED      224    111    117
  AMP PEAK 10(7Q21.2) WILD-TYPE     69     13     12
D10V4, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         224                            69
  CLUS_2                         111                            13
  CLUS_3                         117                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q21.2) MUTATED      184    187    109
  AMP PEAK 10(7Q21.2) WILD-TYPE     71     10     16
D10V5, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         184                            71
  CLUS_2                         187                            10
  CLUS_3                         109                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q21.2) MUTATED       62     40     67     54
  AMP PEAK 10(7Q21.2) WILD-TYPE      8      2     14     28
D10V6, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          62                             8
  CLUS_2                          40                             2
  CLUS_3                          67                            14
  CLUS_4                          54                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7Q21.2) MUTATED       41     46     32     26     40
  AMP PEAK 10(7Q21.2) WILD-TYPE      3     11     12      4      5
D10V7, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          41                             3
  CLUS_2                          46                            11
  CLUS_3                          32                            12
  CLUS_4                          26                             4
  CLUS_5                          40                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q21.2) MUTATED       80     50     55
  AMP PEAK 10(7Q21.2) WILD-TYPE     10     20      5
D10V8, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          80                            10
  CLUS_2                          50                            20
  CLUS_3                          55                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q21.2) MUTATED       34     62     30
  AMP PEAK 10(7Q21.2) WILD-TYPE     11      6      4
D10V9, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          34                            11
  CLUS_2                          62                             6
  CLUS_3                          30                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q21.2) MUTATED       20     85     21
  AMP PEAK 10(7Q21.2) WILD-TYPE     10      7      4
D10V10, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          20                            10
  CLUS_2                          85                             7
  CLUS_3                          21                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q31.2) MUTATED      141     68    113     91
  AMP PEAK 11(7Q31.2) WILD-TYPE     17     28     24     26
D11V1, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         141                            17
  CLUS_2                          68                            28
  CLUS_3                         113                            24
  CLUS_4                          91                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q31.2) MUTATED      131     63     83    136
  AMP PEAK 11(7Q31.2) WILD-TYPE     17     39     17     22
D11V2, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         131                            17
  CLUS_2                          63                            39
  CLUS_3                          83                            17
  CLUS_4                         136                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q31.2) MUTATED      126    141     72    107
  AMP PEAK 11(7Q31.2) WILD-TYPE     17     46     18     19
D11V3, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         126                            17
  CLUS_2                         141                            46
  CLUS_3                          72                            18
  CLUS_4                         107                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED      225    110    111
  AMP PEAK 11(7Q31.2) WILD-TYPE     68     14     18
D11V4, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         225                            68
  CLUS_2                         110                            14
  CLUS_3                         111                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED      190    180    103
  AMP PEAK 11(7Q31.2) WILD-TYPE     65     17     22
D11V5, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         190                            65
  CLUS_2                         180                            17
  CLUS_3                         103                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q31.2) MUTATED       62     36     65     58
  AMP PEAK 11(7Q31.2) WILD-TYPE      8      6     16     24
D11V6, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          62                             8
  CLUS_2                          36                             6
  CLUS_3                          65                            16
  CLUS_4                          58                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7Q31.2) MUTATED       40     46     33     26     37
  AMP PEAK 11(7Q31.2) WILD-TYPE      4     11     11      4      8
D11V7, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          40                             4
  CLUS_2                          46                            11
  CLUS_3                          33                            11
  CLUS_4                          26                             4
  CLUS_5                          37                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED       80     49     53
  AMP PEAK 11(7Q31.2) WILD-TYPE     10     21      7
D11V8, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          80                            10
  CLUS_2                          49                            21
  CLUS_3                          53                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED       35     59     29
  AMP PEAK 11(7Q31.2) WILD-TYPE     10      9      5
D11V9, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          35                            10
  CLUS_2                          59                             9
  CLUS_3                          29                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED       20     83     20
  AMP PEAK 11(7Q31.2) WILD-TYPE     10      9      5
D11V10, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          20                            10
  CLUS_2                          83                             9
  CLUS_3                          20                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED        8     25      6     22
  AMP PEAK 12(8Q24.21) WILD-TYPE    150     71    131     95
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            8                            150
  CLUS_2                           25                             71
  CLUS_3                            6                            131
  CLUS_4                           22                             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       10     29      6     16
  AMP PEAK 12(8Q24.21) WILD-TYPE    138     73     94    142
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           10                            138
  CLUS_2                           29                             73
  CLUS_3                            6                             94
  CLUS_4                           16                            142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       10     31     13     10
  AMP PEAK 12(8Q24.21) WILD-TYPE    133    156     77    116
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           10                            133
  CLUS_2                           31                            156
  CLUS_3                           13                             77
  CLUS_4                           10                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       41     11     12
  AMP PEAK 12(8Q24.21) WILD-TYPE    252    113    117
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           41                            252
  CLUS_2                           11                            113
  CLUS_3                           12                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       37     26      6
  AMP PEAK 12(8Q24.21) WILD-TYPE    218    171    119
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           37                            218
  CLUS_2                           26                            171
  CLUS_3                            6                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED        4      3     11     22
  AMP PEAK 12(8Q24.21) WILD-TYPE     66     39     70     60
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            4                             66
  CLUS_2                            3                             39
  CLUS_3                           11                             70
  CLUS_4                           22                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED        2      7      5      9      4
  AMP PEAK 12(8Q24.21) WILD-TYPE     42     50     39     21     41
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            2                             42
  CLUS_2                            7                             50
  CLUS_3                            5                             39
  CLUS_4                            9                             21
  CLUS_5                            4                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED        7     15      5
  AMP PEAK 12(8Q24.21) WILD-TYPE     83     55     55
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            7                             83
  CLUS_2                           15                             55
  CLUS_3                            5                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       11      8      2
  AMP PEAK 12(8Q24.21) WILD-TYPE     34     60     32
D12V9, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                            8                             60
  CLUS_3                            2                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED        7     12      2
  AMP PEAK 12(8Q24.21) WILD-TYPE     23     80     23
D12V10, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           12                             80
  CLUS_3                            2                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11P13) MUTATED        8      6      6      8
  AMP PEAK 13(11P13) WILD-TYPE    150     90    131    109
D13V1, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          8                          150
  CLUS_2                          6                           90
  CLUS_3                          6                          131
  CLUS_4                          8                          109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11P13) MUTATED        7      5      3     13
  AMP PEAK 13(11P13) WILD-TYPE    141     97     97    145
D13V2, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          7                          141
  CLUS_2                          5                           97
  CLUS_3                          3                           97
  CLUS_4                         13                          145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11P13) MUTATED        8     11      2      8
  AMP PEAK 13(11P13) WILD-TYPE    135    176     88    118
D13V3, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          8                          135
  CLUS_2                         11                          176
  CLUS_3                          2                           88
  CLUS_4                          8                          118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED       12     10      7
  AMP PEAK 13(11P13) WILD-TYPE    281    114    122
D13V4, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                         12                          281
  CLUS_2                         10                          114
  CLUS_3                          7                          122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED       12     14      5
  AMP PEAK 13(11P13) WILD-TYPE    243    183    120
D13V5, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                         12                          243
  CLUS_2                         14                          183
  CLUS_3                          5                          120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11P13) MUTATED        6      1      5      5
  AMP PEAK 13(11P13) WILD-TYPE     64     41     76     77
D13V6, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          6                           64
  CLUS_2                          1                           41
  CLUS_3                          5                           76
  CLUS_4                          5                           77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(11P13) MUTATED        3      2      0      3      1
  AMP PEAK 13(11P13) WILD-TYPE     41     55     44     27     44
D13V7, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          3                           41
  CLUS_2                          2                           55
  CLUS_3                          0                           44
  CLUS_4                          3                           27
  CLUS_5                          1                           44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED        4      3      2
  AMP PEAK 13(11P13) WILD-TYPE     86     67     58
D13V8, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          4                           86
  CLUS_2                          3                           67
  CLUS_3                          2                           58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED        3      4      2
  AMP PEAK 13(11P13) WILD-TYPE     42     64     32
D13V9, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          3                           42
  CLUS_2                          4                           64
  CLUS_3                          2                           32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED        1      7      1
  AMP PEAK 13(11P13) WILD-TYPE     29     85     24
D13V10, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          1                           29
  CLUS_2                          7                           85
  CLUS_3                          1                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(12P13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12P13.32) MUTATED       22     16     18     20
  AMP PEAK 14(12P13.32) WILD-TYPE    136     80    119     97
D14V1, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                            22                             136
  CLUS_2                            16                              80
  CLUS_3                            18                             119
  CLUS_4                            20                              97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12P13.32) MUTATED       20     21     13     22
  AMP PEAK 14(12P13.32) WILD-TYPE    128     81     87    136
D14V2, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                            20                             128
  CLUS_2                            21                              81
  CLUS_3                            13                              87
  CLUS_4                            22                             136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12P13.32) MUTATED       17     34     12     19
  AMP PEAK 14(12P13.32) WILD-TYPE    126    153     78    107
D14V3, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                            17                             126
  CLUS_2                            34                             153
  CLUS_3                            12                              78
  CLUS_4                            19                             107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12P13.32) MUTATED       39     20     23
  AMP PEAK 14(12P13.32) WILD-TYPE    254    104    106
D14V4, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                            39                             254
  CLUS_2                            20                             104
  CLUS_3                            23                             106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12P13.32) MUTATED       45     27     12
  AMP PEAK 14(12P13.32) WILD-TYPE    210    170    113
D14V5, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                            45                             210
  CLUS_2                            27                             170
  CLUS_3                            12                             113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12P13.32) MUTATED        7      5     10     13
  AMP PEAK 14(12P13.32) WILD-TYPE     63     37     71     69
D14V6, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                             7                              63
  CLUS_2                             5                              37
  CLUS_3                            10                              71
  CLUS_4                            13                              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(12P13.32) MUTATED        4      5      7      5      8
  AMP PEAK 14(12P13.32) WILD-TYPE     40     52     37     25     37
D14V7, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                             4                              40
  CLUS_2                             5                              52
  CLUS_3                             7                              37
  CLUS_4                             5                              25
  CLUS_5                             8                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12P13.32) MUTATED        8     11     10
  AMP PEAK 14(12P13.32) WILD-TYPE     82     59     50
D14V8, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                             8                              82
  CLUS_2                            11                              59
  CLUS_3                            10                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12P13.32) MUTATED        5     14      4
  AMP PEAK 14(12P13.32) WILD-TYPE     40     54     30
D14V9, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                             5                              40
  CLUS_2                            14                              54
  CLUS_3                             4                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12P13.32) MUTATED        3     17      3
  AMP PEAK 14(12P13.32) WILD-TYPE     27     75     22
D14V10, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                             3                              27
  CLUS_2                            17                              75
  CLUS_3                             3                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q14.1) MUTATED       33     27     27     36
  AMP PEAK 15(12Q14.1) WILD-TYPE    125     69    110     81
D15V1, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           33                            125
  CLUS_2                           27                             69
  CLUS_3                           27                            110
  CLUS_4                           36                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q14.1) MUTATED       31     32     19     41
  AMP PEAK 15(12Q14.1) WILD-TYPE    117     70     81    117
D15V2, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           31                            117
  CLUS_2                           32                             70
  CLUS_3                           19                             81
  CLUS_4                           41                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q14.1) MUTATED       25     60     18     26
  AMP PEAK 15(12Q14.1) WILD-TYPE    118    127     72    100
D15V3, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           25                            118
  CLUS_2                           60                            127
  CLUS_3                           18                             72
  CLUS_4                           26                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       63     26     40
  AMP PEAK 15(12Q14.1) WILD-TYPE    230     98     89
D15V4, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           63                            230
  CLUS_2                           26                             98
  CLUS_3                           40                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       56     60     18
  AMP PEAK 15(12Q14.1) WILD-TYPE    199    137    107
D15V5, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           56                            199
  CLUS_2                           60                            137
  CLUS_3                           18                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q14.1) MUTATED       13     10     20     23
  AMP PEAK 15(12Q14.1) WILD-TYPE     57     32     61     59
D15V6, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           13                             57
  CLUS_2                           10                             32
  CLUS_3                           20                             61
  CLUS_4                           23                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(12Q14.1) MUTATED        6     10     13      9     10
  AMP PEAK 15(12Q14.1) WILD-TYPE     38     47     31     21     35
D15V7, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                            6                             38
  CLUS_2                           10                             47
  CLUS_3                           13                             31
  CLUS_4                            9                             21
  CLUS_5                           10                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       16     21     11
  AMP PEAK 15(12Q14.1) WILD-TYPE     74     49     49
D15V8, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           16                             74
  CLUS_2                           21                             49
  CLUS_3                           11                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       19     15      8
  AMP PEAK 15(12Q14.1) WILD-TYPE     26     53     26
D15V9, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           19                             26
  CLUS_2                           15                             53
  CLUS_3                            8                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       13     22      7
  AMP PEAK 15(12Q14.1) WILD-TYPE     17     70     18
D15V10, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           13                             17
  CLUS_2                           22                             70
  CLUS_3                            7                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED       26     19     19     18
  AMP PEAK 16(12Q15) WILD-TYPE    132     77    118     99
D16V1, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         26                          132
  CLUS_2                         19                           77
  CLUS_3                         19                          118
  CLUS_4                         18                           99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED       25     15     11     31
  AMP PEAK 16(12Q15) WILD-TYPE    123     87     89    127
D16V2, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         25                          123
  CLUS_2                         15                           87
  CLUS_3                         11                           89
  CLUS_4                         31                          127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED       18     33     17     23
  AMP PEAK 16(12Q15) WILD-TYPE    125    154     73    103
D16V3, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         18                          125
  CLUS_2                         33                          154
  CLUS_3                         17                           73
  CLUS_4                         23                          103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED       43     21     27
  AMP PEAK 16(12Q15) WILD-TYPE    250    103    102
D16V4, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         43                          250
  CLUS_2                         21                          103
  CLUS_3                         27                          102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED       41     39     13
  AMP PEAK 16(12Q15) WILD-TYPE    214    158    112
D16V5, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         41                          214
  CLUS_2                         39                          158
  CLUS_3                         13                          112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED       13      6     13     11
  AMP PEAK 16(12Q15) WILD-TYPE     57     36     68     71
D16V6, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         13                           57
  CLUS_2                          6                           36
  CLUS_3                         13                           68
  CLUS_4                         11                           71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(12Q15) MUTATED        3      5      7      3      7
  AMP PEAK 16(12Q15) WILD-TYPE     41     52     37     27     38
D16V7, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          3                           41
  CLUS_2                          5                           52
  CLUS_3                          7                           37
  CLUS_4                          3                           27
  CLUS_5                          7                           38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED        7      9      9
  AMP PEAK 16(12Q15) WILD-TYPE     83     61     51
D16V8, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          7                           83
  CLUS_2                          9                           61
  CLUS_3                          9                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED        9     12      3
  AMP PEAK 16(12Q15) WILD-TYPE     36     56     31
D16V9, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          9                           36
  CLUS_2                         12                           56
  CLUS_3                          3                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED        5     16      3
  AMP PEAK 16(12Q15) WILD-TYPE     25     76     22
D16V10, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          5                           25
  CLUS_2                         16                           76
  CLUS_3                          3                           22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q34) MUTATED        9     10      6      5
  AMP PEAK 17(13Q34) WILD-TYPE    149     86    131    112
D17V1, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          9                          149
  CLUS_2                         10                           86
  CLUS_3                          6                          131
  CLUS_4                          5                          112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q34) MUTATED        6      8      3     13
  AMP PEAK 17(13Q34) WILD-TYPE    142     94     97    145
D17V2, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          6                          142
  CLUS_2                          8                           94
  CLUS_3                          3                           97
  CLUS_4                         13                          145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q34) MUTATED        3     16      6      6
  AMP PEAK 17(13Q34) WILD-TYPE    140    171     84    120
D17V3, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          3                          140
  CLUS_2                         16                          171
  CLUS_3                          6                           84
  CLUS_4                          6                          120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q34) MUTATED       20      6      5
  AMP PEAK 17(13Q34) WILD-TYPE    273    118    124
D17V4, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                         20                          273
  CLUS_2                          6                          118
  CLUS_3                          5                          124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q34) MUTATED       18     12      2
  AMP PEAK 17(13Q34) WILD-TYPE    237    185    123
D17V5, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                         18                          237
  CLUS_2                         12                          185
  CLUS_3                          2                          123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q34) MUTATED        3      4      5      8
  AMP PEAK 17(13Q34) WILD-TYPE     67     38     76     74
D17V6, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          3                           67
  CLUS_2                          4                           38
  CLUS_3                          5                           76
  CLUS_4                          8                           74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(13Q34) MUTATED        0      3      0      3      4
  AMP PEAK 17(13Q34) WILD-TYPE     44     54     44     27     41
D17V7, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          0                           44
  CLUS_2                          3                           54
  CLUS_3                          0                           44
  CLUS_4                          3                           27
  CLUS_5                          4                           41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q34) MUTATED        1      5      4
  AMP PEAK 17(13Q34) WILD-TYPE     89     65     56
D17V8, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          1                           89
  CLUS_2                          5                           65
  CLUS_3                          4                           56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q34) MUTATED        2      5      3
  AMP PEAK 17(13Q34) WILD-TYPE     43     63     31
D17V9, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          2                           43
  CLUS_2                          5                           63
  CLUS_3                          3                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q34) MUTATED        1      7      2
  AMP PEAK 17(13Q34) WILD-TYPE     29     85     23
D17V10, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          1                           29
  CLUS_2                          7                           85
  CLUS_3                          2                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED        8      9      6      4
  AMP PEAK 18(13Q34) WILD-TYPE    150     87    131    113
D18V1, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          8                          150
  CLUS_2                          9                           87
  CLUS_3                          6                          131
  CLUS_4                          4                          113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED        4      7      4     12
  AMP PEAK 18(13Q34) WILD-TYPE    144     95     96    146
D18V2, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          4                          144
  CLUS_2                          7                           95
  CLUS_3                          4                           96
  CLUS_4                         12                          146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED        4     14      4      6
  AMP PEAK 18(13Q34) WILD-TYPE    139    173     86    120
D18V3, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          4                          139
  CLUS_2                         14                          173
  CLUS_3                          4                           86
  CLUS_4                          6                          120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       16      7      5
  AMP PEAK 18(13Q34) WILD-TYPE    277    117    124
D18V4, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         16                          277
  CLUS_2                          7                          117
  CLUS_3                          5                          124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       14     14      2
  AMP PEAK 18(13Q34) WILD-TYPE    241    183    123
D18V5, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         14                          241
  CLUS_2                         14                          183
  CLUS_3                          2                          123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED        3      3      5      6
  AMP PEAK 18(13Q34) WILD-TYPE     67     39     76     76
D18V6, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          3                           67
  CLUS_2                          3                           39
  CLUS_3                          5                           76
  CLUS_4                          6                           76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(13Q34) MUTATED        1      4      0      3      4
  AMP PEAK 18(13Q34) WILD-TYPE     43     53     44     27     41
D18V7, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          1                           43
  CLUS_2                          4                           53
  CLUS_3                          0                           44
  CLUS_4                          3                           27
  CLUS_5                          4                           41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED        2      6      4
  AMP PEAK 18(13Q34) WILD-TYPE     88     64     56
D18V8, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          2                           88
  CLUS_2                          6                           64
  CLUS_3                          4                           56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED        2      4      3
  AMP PEAK 18(13Q34) WILD-TYPE     43     64     31
D18V9, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          2                           43
  CLUS_2                          4                           64
  CLUS_3                          3                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED        1      6      2
  AMP PEAK 18(13Q34) WILD-TYPE     29     86     23
D18V10, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          1                           29
  CLUS_2                          6                           86
  CLUS_3                          2                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(14Q32.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q32.33) MUTATED        6      6     15      5
  AMP PEAK 19(14Q32.33) WILD-TYPE    152     90    122    112
D19V1, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             6                             152
  CLUS_2                             6                              90
  CLUS_3                            15                             122
  CLUS_4                             5                             112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q32.33) MUTATED        9      5      9      9
  AMP PEAK 19(14Q32.33) WILD-TYPE    139     97     91    149
D19V2, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             9                             139
  CLUS_2                             5                              97
  CLUS_3                             9                              91
  CLUS_4                             9                             149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q32.33) MUTATED       12     10     10      3
  AMP PEAK 19(14Q32.33) WILD-TYPE    131    177     80    123
D19V3, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                            12                             131
  CLUS_2                            10                             177
  CLUS_3                            10                              80
  CLUS_4                             3                             123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(14Q32.33) MUTATED       19      7      9
  AMP PEAK 19(14Q32.33) WILD-TYPE    274    117    120
D19V4, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                            19                             274
  CLUS_2                             7                             117
  CLUS_3                             9                             120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(14Q32.33) MUTATED       10     17      9
  AMP PEAK 19(14Q32.33) WILD-TYPE    245    180    116
D19V5, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                            10                             245
  CLUS_2                            17                             180
  CLUS_3                             9                             116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q32.33) MUTATED        2      4      7      4
  AMP PEAK 19(14Q32.33) WILD-TYPE     68     38     74     78
D19V6, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             2                              68
  CLUS_2                             4                              38
  CLUS_3                             7                              74
  CLUS_4                             4                              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(14Q32.33) MUTATED        0      2      4      3      2
  AMP PEAK 19(14Q32.33) WILD-TYPE     44     55     40     27     43
D19V7, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             0                              44
  CLUS_2                             2                              55
  CLUS_3                             4                              40
  CLUS_4                             3                              27
  CLUS_5                             2                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(14Q32.33) MUTATED        1      6      4
  AMP PEAK 19(14Q32.33) WILD-TYPE     89     64     56
D19V8, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             1                              89
  CLUS_2                             6                              64
  CLUS_3                             4                              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(14Q32.33) MUTATED        1      3      6
  AMP PEAK 19(14Q32.33) WILD-TYPE     44     65     28
D19V9, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             1                              44
  CLUS_2                             3                              65
  CLUS_3                             6                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(14Q32.33) MUTATED        0      6      4
  AMP PEAK 19(14Q32.33) WILD-TYPE     30     86     21
D19V10, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             0                              30
  CLUS_2                             6                              86
  CLUS_3                             4                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(17P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17P13.2) MUTATED        9     13      6     19
  AMP PEAK 20(17P13.2) WILD-TYPE    149     83    131     98
D20V1, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            9                            149
  CLUS_2                           13                             83
  CLUS_3                            6                            131
  CLUS_4                           19                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17P13.2) MUTATED       10     18      5     14
  AMP PEAK 20(17P13.2) WILD-TYPE    138     84     95    144
D20V2, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           10                            138
  CLUS_2                           18                             84
  CLUS_3                            5                             95
  CLUS_4                           14                            144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17P13.2) MUTATED        5     22      8     13
  AMP PEAK 20(17P13.2) WILD-TYPE    138    165     82    113
D20V3, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            5                            138
  CLUS_2                           22                            165
  CLUS_3                            8                             82
  CLUS_4                           13                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17P13.2) MUTATED       32     10      6
  AMP PEAK 20(17P13.2) WILD-TYPE    261    114    123
D20V4, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           32                            261
  CLUS_2                           10                            114
  CLUS_3                            6                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17P13.2) MUTATED       24     22      5
  AMP PEAK 20(17P13.2) WILD-TYPE    231    175    120
D20V5, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           24                            231
  CLUS_2                           22                            175
  CLUS_3                            5                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17P13.2) MUTATED        4      1      5     13
  AMP PEAK 20(17P13.2) WILD-TYPE     66     41     76     69
D20V6, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            4                             66
  CLUS_2                            1                             41
  CLUS_3                            5                             76
  CLUS_4                           13                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(17P13.2) MUTATED        5      9      2      6      0
  AMP PEAK 20(17P13.2) WILD-TYPE     39     48     42     24     45
D20V7, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            5                             39
  CLUS_2                            9                             48
  CLUS_3                            2                             42
  CLUS_4                            6                             24
  CLUS_5                            0                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17P13.2) MUTATED        9      9      4
  AMP PEAK 20(17P13.2) WILD-TYPE     81     61     56
D20V8, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            9                             81
  CLUS_2                            9                             61
  CLUS_3                            4                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17P13.2) MUTATED        5      3      2
  AMP PEAK 20(17P13.2) WILD-TYPE     40     65     32
D20V9, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            5                             40
  CLUS_2                            3                             65
  CLUS_3                            2                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17P13.2) MUTATED        3      5      2
  AMP PEAK 20(17P13.2) WILD-TYPE     27     87     23
D20V10, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                            5                             87
  CLUS_3                            2                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(17Q25.1) MUTATED       19     22     13     19
  AMP PEAK 21(17Q25.1) WILD-TYPE    139     74    124     98
D21V1, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           19                            139
  CLUS_2                           22                             74
  CLUS_3                           13                            124
  CLUS_4                           19                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(17Q25.1) MUTATED       16     19     12     26
  AMP PEAK 21(17Q25.1) WILD-TYPE    132     83     88    132
D21V2, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           16                            132
  CLUS_2                           19                             83
  CLUS_3                           12                             88
  CLUS_4                           26                            132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(17Q25.1) MUTATED       13     32     13     21
  AMP PEAK 21(17Q25.1) WILD-TYPE    130    155     77    105
D21V3, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           13                            130
  CLUS_2                           32                            155
  CLUS_3                           13                             77
  CLUS_4                           21                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q25.1) MUTATED       46     16     17
  AMP PEAK 21(17Q25.1) WILD-TYPE    247    108    112
D21V4, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           46                            247
  CLUS_2                           16                            108
  CLUS_3                           17                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q25.1) MUTATED       39     37      8
  AMP PEAK 21(17Q25.1) WILD-TYPE    216    160    117
D21V5, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           39                            216
  CLUS_2                           37                            160
  CLUS_3                            8                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(17Q25.1) MUTATED        5      6     12     18
  AMP PEAK 21(17Q25.1) WILD-TYPE     65     36     69     64
D21V6, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            5                             65
  CLUS_2                            6                             36
  CLUS_3                           12                             69
  CLUS_4                           18                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(17Q25.1) MUTATED        7      9      4      6      1
  AMP PEAK 21(17Q25.1) WILD-TYPE     37     48     40     24     44
D21V7, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            7                             37
  CLUS_2                            9                             48
  CLUS_3                            4                             40
  CLUS_4                            6                             24
  CLUS_5                            1                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q25.1) MUTATED       14      9      4
  AMP PEAK 21(17Q25.1) WILD-TYPE     76     61     56
D21V8, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           14                             76
  CLUS_2                            9                             61
  CLUS_3                            4                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q25.1) MUTATED        7      9      4
  AMP PEAK 21(17Q25.1) WILD-TYPE     38     59     30
D21V9, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            7                             38
  CLUS_2                            9                             59
  CLUS_3                            4                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q25.1) MUTATED        5     11      4
  AMP PEAK 21(17Q25.1) WILD-TYPE     25     81     21
D21V10, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           11                             81
  CLUS_3                            4                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19P13.3) MUTATED       63     35     90     29
  AMP PEAK 22(19P13.3) WILD-TYPE     95     61     47     88
D22V1, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           63                             95
  CLUS_2                           35                             61
  CLUS_3                           90                             47
  CLUS_4                           29                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19P13.3) MUTATED       67     31     62     57
  AMP PEAK 22(19P13.3) WILD-TYPE     81     71     38    101
D22V2, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           67                             81
  CLUS_2                           31                             71
  CLUS_3                           62                             38
  CLUS_4                           57                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19P13.3) MUTATED       59     89     27     57
  AMP PEAK 22(19P13.3) WILD-TYPE     84     98     63     69
D22V3, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           59                             84
  CLUS_2                           89                             98
  CLUS_3                           27                             63
  CLUS_4                           57                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.3) MUTATED      108     53     71
  AMP PEAK 22(19P13.3) WILD-TYPE    185     71     58
D22V4, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                          108                            185
  CLUS_2                           53                             71
  CLUS_3                           71                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.3) MUTATED       75     63    108
  AMP PEAK 22(19P13.3) WILD-TYPE    180    134     17
D22V5, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           75                            180
  CLUS_2                           63                            134
  CLUS_3                          108                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19P13.3) MUTATED       26     20     55     19
  AMP PEAK 22(19P13.3) WILD-TYPE     44     22     26     63
D22V6, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           26                             44
  CLUS_2                           20                             22
  CLUS_3                           55                             26
  CLUS_4                           19                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(19P13.3) MUTATED       14     28     15     16     19
  AMP PEAK 22(19P13.3) WILD-TYPE     30     29     29     14     26
D22V7, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           14                             30
  CLUS_2                           28                             29
  CLUS_3                           15                             29
  CLUS_4                           16                             14
  CLUS_5                           19                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.3) MUTATED       32     21     39
  AMP PEAK 22(19P13.3) WILD-TYPE     58     49     21
D22V8, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           32                             58
  CLUS_2                           21                             49
  CLUS_3                           39                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.3) MUTATED       15     28     13
  AMP PEAK 22(19P13.3) WILD-TYPE     30     40     21
D22V9, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           15                             30
  CLUS_2                           28                             40
  CLUS_3                           13                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.3) MUTATED       12     35      9
  AMP PEAK 22(19P13.3) WILD-TYPE     18     57     16
D22V10, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           12                             18
  CLUS_2                           35                             57
  CLUS_3                            9                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(19Q12) MUTATED       60     31     79     18
  AMP PEAK 23(19Q12) WILD-TYPE     98     65     58     99
D23V1, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         60                           98
  CLUS_2                         31                           65
  CLUS_3                         79                           58
  CLUS_4                         18                           99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(19Q12) MUTATED       62     21     54     51
  AMP PEAK 23(19Q12) WILD-TYPE     86     81     46    107
D23V2, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         62                           86
  CLUS_2                         21                           81
  CLUS_3                         54                           46
  CLUS_4                         51                          107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(19Q12) MUTATED       55     70     26     50
  AMP PEAK 23(19Q12) WILD-TYPE     88    117     64     76
D23V3, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         55                           88
  CLUS_2                         70                          117
  CLUS_3                         26                           64
  CLUS_4                         50                           76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19Q12) MUTATED       91     49     61
  AMP PEAK 23(19Q12) WILD-TYPE    202     75     68
D23V4, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         91                          202
  CLUS_2                         49                           75
  CLUS_3                         61                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19Q12) MUTATED       63     51    102
  AMP PEAK 23(19Q12) WILD-TYPE    192    146     23
D23V5, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         63                          192
  CLUS_2                         51                          146
  CLUS_3                        102                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(19Q12) MUTATED       27     18     49     11
  AMP PEAK 23(19Q12) WILD-TYPE     43     24     32     71
D23V6, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         27                           43
  CLUS_2                         18                           24
  CLUS_3                         49                           32
  CLUS_4                         11                           71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(19Q12) MUTATED       13     26     14     12     16
  AMP PEAK 23(19Q12) WILD-TYPE     31     31     30     18     29
D23V7, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         13                           31
  CLUS_2                         26                           31
  CLUS_3                         14                           30
  CLUS_4                         12                           18
  CLUS_5                         16                           29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19Q12) MUTATED       31     17     33
  AMP PEAK 23(19Q12) WILD-TYPE     59     53     27
D23V8, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                         31                           59
  CLUS_2                         17                           53
  CLUS_3                         33                           27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19Q12) MUTATED        9     27     14
  AMP PEAK 23(19Q12) WILD-TYPE     36     41     20
D23V9, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                          9                           36
  CLUS_2                         27                           41
  CLUS_3                         14                           20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19Q12) MUTATED        6     34     10
  AMP PEAK 23(19Q12) WILD-TYPE     24     58     15
D23V10, multiclass
        clus
vv       AMP PEAK 23(19Q12) MUTATED AMP PEAK 23(19Q12) WILD-TYPE
  CLUS_1                          6                           24
  CLUS_2                         34                           58
  CLUS_3                         10                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(21Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(21Q21.1) MUTATED       29     12      9     10
  AMP PEAK 24(21Q21.1) WILD-TYPE    129     84    128    107
D24V1, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                           29                            129
  CLUS_2                           12                             84
  CLUS_3                            9                            128
  CLUS_4                           10                            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(21Q21.1) MUTATED       26      9      7     18
  AMP PEAK 24(21Q21.1) WILD-TYPE    122     93     93    140
D24V2, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                           26                            122
  CLUS_2                            9                             93
  CLUS_3                            7                             93
  CLUS_4                           18                            140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(21Q21.1) MUTATED       25     19      5     19
  AMP PEAK 24(21Q21.1) WILD-TYPE    118    168     85    107
D24V3, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                           25                            118
  CLUS_2                           19                            168
  CLUS_3                            5                             85
  CLUS_4                           19                            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(21Q21.1) MUTATED       29     26     13
  AMP PEAK 24(21Q21.1) WILD-TYPE    264     98    116
D24V4, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                           29                            264
  CLUS_2                           26                             98
  CLUS_3                           13                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(21Q21.1) MUTATED       35     27      8
  AMP PEAK 24(21Q21.1) WILD-TYPE    220    170    117
D24V5, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                           35                            220
  CLUS_2                           27                            170
  CLUS_3                            8                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(21Q21.1) MUTATED       16      3      7      9
  AMP PEAK 24(21Q21.1) WILD-TYPE     54     39     74     73
D24V6, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                           16                             54
  CLUS_2                            3                             39
  CLUS_3                            7                             74
  CLUS_4                            9                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(21Q21.1) MUTATED        7      6      2      7      3
  AMP PEAK 24(21Q21.1) WILD-TYPE     37     51     42     23     42
D24V7, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                            7                             37
  CLUS_2                            6                             51
  CLUS_3                            2                             42
  CLUS_4                            7                             23
  CLUS_5                            3                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(21Q21.1) MUTATED       12      8      5
  AMP PEAK 24(21Q21.1) WILD-TYPE     78     62     55
D24V8, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                           12                             78
  CLUS_2                            8                             62
  CLUS_3                            5                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(21Q21.1) MUTATED        4     16      4
  AMP PEAK 24(21Q21.1) WILD-TYPE     41     52     30
D24V9, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                            4                             41
  CLUS_2                           16                             52
  CLUS_3                            4                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(21Q21.1) MUTATED        3     18      3
  AMP PEAK 24(21Q21.1) WILD-TYPE     27     74     22
D24V10, multiclass
        clus
vv       AMP PEAK 24(21Q21.1) MUTATED AMP PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           18                             74
  CLUS_3                            3                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       25     17     27     23
  DEL PEAK  1(1P36.32) WILD-TYPE    133     79    110     94
D25V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           25                            133
  CLUS_2                           17                             79
  CLUS_3                           27                            110
  CLUS_4                           23                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       24     22     19     27
  DEL PEAK  1(1P36.32) WILD-TYPE    124     80     81    131
D25V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           24                            124
  CLUS_2                           22                             80
  CLUS_3                           19                             81
  CLUS_4                           27                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       22     38     18     20
  DEL PEAK  1(1P36.32) WILD-TYPE    121    149     72    106
D25V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           22                            121
  CLUS_2                           38                            149
  CLUS_3                           18                             72
  CLUS_4                           20                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       54     16     28
  DEL PEAK  1(1P36.32) WILD-TYPE    239    108    101
D25V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           54                            239
  CLUS_2                           16                            108
  CLUS_3                           28                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       41     32     27
  DEL PEAK  1(1P36.32) WILD-TYPE    214    165     98
D25V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           41                            214
  CLUS_2                           32                            165
  CLUS_3                           27                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        9     10     13     19
  DEL PEAK  1(1P36.32) WILD-TYPE     61     32     68     63
D25V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            9                             61
  CLUS_2                           10                             32
  CLUS_3                           13                             68
  CLUS_4                           19                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.32) MUTATED        8      7      8      5     11
  DEL PEAK  1(1P36.32) WILD-TYPE     36     50     36     25     34
D25V7, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                            7                             50
  CLUS_3                            8                             36
  CLUS_4                            5                             25
  CLUS_5                           11                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       17     16      6
  DEL PEAK  1(1P36.32) WILD-TYPE     73     54     54
D25V8, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           17                             73
  CLUS_2                           16                             54
  CLUS_3                            6                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED        5      7      8
  DEL PEAK  1(1P36.32) WILD-TYPE     40     61     26
D25V9, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            5                             40
  CLUS_2                            7                             61
  CLUS_3                            8                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED        3     12      5
  DEL PEAK  1(1P36.32) WILD-TYPE     27     80     20
D25V10, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           12                             80
  CLUS_3                            5                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  2(1P36.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       36     14     44     27
  DEL PEAK  2(1P36.23) WILD-TYPE    122     82     93     90
D26V1, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           36                            122
  CLUS_2                           14                             82
  CLUS_3                           44                             93
  CLUS_4                           27                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       35     17     28     41
  DEL PEAK  2(1P36.23) WILD-TYPE    113     85     72    117
D26V2, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           35                            113
  CLUS_2                           17                             85
  CLUS_3                           28                             72
  CLUS_4                           41                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       34     41     21     34
  DEL PEAK  2(1P36.23) WILD-TYPE    109    146     69     92
D26V3, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           34                            109
  CLUS_2                           41                            146
  CLUS_3                           21                             69
  CLUS_4                           34                             92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED       65     32     33
  DEL PEAK  2(1P36.23) WILD-TYPE    228     92     96
D26V4, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           65                            228
  CLUS_2                           32                             92
  CLUS_3                           33                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED       49     47     39
  DEL PEAK  2(1P36.23) WILD-TYPE    206    150     86
D26V5, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           49                            206
  CLUS_2                           47                            150
  CLUS_3                           39                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       15     11     20     14
  DEL PEAK  2(1P36.23) WILD-TYPE     55     31     61     68
D26V6, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           15                             55
  CLUS_2                           11                             31
  CLUS_3                           20                             61
  CLUS_4                           14                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.23) MUTATED       11     17     11      5     13
  DEL PEAK  2(1P36.23) WILD-TYPE     33     40     33     25     32
D26V7, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           11                             33
  CLUS_2                           17                             40
  CLUS_3                           11                             33
  CLUS_4                            5                             25
  CLUS_5                           13                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED       27     13     17
  DEL PEAK  2(1P36.23) WILD-TYPE     63     57     43
D26V8, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           27                             63
  CLUS_2                           13                             57
  CLUS_3                           17                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED        6     14     15
  DEL PEAK  2(1P36.23) WILD-TYPE     39     54     19
D26V9, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                            6                             39
  CLUS_2                           14                             54
  CLUS_3                           15                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED        4     21     10
  DEL PEAK  2(1P36.23) WILD-TYPE     26     71     15
D26V10, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                            4                             26
  CLUS_2                           21                             71
  CLUS_3                           10                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  3(1P32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED       21     14     11     12
  DEL PEAK  3(1P32.3) WILD-TYPE    137     82    126    105
D27V1, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          21                           137
  CLUS_2                          14                            82
  CLUS_3                          11                           126
  CLUS_4                          12                           105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED       17     15      7     19
  DEL PEAK  3(1P32.3) WILD-TYPE    131     87     93    139
D27V2, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          17                           131
  CLUS_2                          15                            87
  CLUS_3                           7                            93
  CLUS_4                          19                           139
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED       20     20      8     12
  DEL PEAK  3(1P32.3) WILD-TYPE    123    167     82    114
D27V3, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          20                           123
  CLUS_2                          20                           167
  CLUS_3                           8                            82
  CLUS_4                          12                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED       35      8     17
  DEL PEAK  3(1P32.3) WILD-TYPE    258    116    112
D27V4, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          35                           258
  CLUS_2                           8                           116
  CLUS_3                          17                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED       32     17     12
  DEL PEAK  3(1P32.3) WILD-TYPE    223    180    113
D27V5, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          32                           223
  CLUS_2                          17                           180
  CLUS_3                          12                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED        5      3     10      8
  DEL PEAK  3(1P32.3) WILD-TYPE     65     39     71     74
D27V6, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           5                            65
  CLUS_2                           3                            39
  CLUS_3                          10                            71
  CLUS_4                           8                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P32.3) MUTATED        5      5      4      1      4
  DEL PEAK  3(1P32.3) WILD-TYPE     39     52     40     29     41
D27V7, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           5                            39
  CLUS_2                           5                            52
  CLUS_3                           4                            40
  CLUS_4                           1                            29
  CLUS_5                           4                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED        9      6      4
  DEL PEAK  3(1P32.3) WILD-TYPE     81     64     56
D27V8, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           9                            81
  CLUS_2                           6                            64
  CLUS_3                           4                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED        8      9      6
  DEL PEAK  3(1P32.3) WILD-TYPE     37     59     28
D27V9, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           8                            37
  CLUS_2                           9                            59
  CLUS_3                           6                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED        7     10      6
  DEL PEAK  3(1P32.3) WILD-TYPE     23     82     19
D27V10, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           7                            23
  CLUS_2                          10                            82
  CLUS_3                           6                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  4(1P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED       13      9     11      9
  DEL PEAK  4(1P22.1) WILD-TYPE    145     87    126    108
D28V1, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          13                           145
  CLUS_2                           9                            87
  CLUS_3                          11                           126
  CLUS_4                           9                           108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED       15      7     10     10
  DEL PEAK  4(1P22.1) WILD-TYPE    133     95     90    148
D28V2, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          15                           133
  CLUS_2                           7                            95
  CLUS_3                          10                            90
  CLUS_4                          10                           148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED       12     17      7      9
  DEL PEAK  4(1P22.1) WILD-TYPE    131    170     83    117
D28V3, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          12                           131
  CLUS_2                          17                           170
  CLUS_3                           7                            83
  CLUS_4                           9                           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED       25      3     17
  DEL PEAK  4(1P22.1) WILD-TYPE    268    121    112
D28V4, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          25                           268
  CLUS_2                           3                           121
  CLUS_3                          17                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED       18     13     17
  DEL PEAK  4(1P22.1) WILD-TYPE    237    184    108
D28V5, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          18                           237
  CLUS_2                          13                           184
  CLUS_3                          17                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED        2      4     14      7
  DEL PEAK  4(1P22.1) WILD-TYPE     68     38     67     75
D28V6, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           2                            68
  CLUS_2                           4                            38
  CLUS_3                          14                            67
  CLUS_4                           7                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1P22.1) MUTATED        4      6      2      1      7
  DEL PEAK  4(1P22.1) WILD-TYPE     40     51     42     29     38
D28V7, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           4                            40
  CLUS_2                           6                            51
  CLUS_3                           2                            42
  CLUS_4                           1                            29
  CLUS_5                           7                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED        8      8      4
  DEL PEAK  4(1P22.1) WILD-TYPE     82     62     56
D28V8, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           8                            82
  CLUS_2                           8                            62
  CLUS_3                           4                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED        4      5      1
  DEL PEAK  4(1P22.1) WILD-TYPE     41     63     33
D28V9, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           4                            41
  CLUS_2                           5                            63
  CLUS_3                           1                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED        4      5      1
  DEL PEAK  4(1P22.1) WILD-TYPE     26     87     24
D28V10, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                           5                            87
  CLUS_3                           1                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  5(1Q42.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED       18      4     10     10
  DEL PEAK  5(1Q42.11) WILD-TYPE    140     92    127    107
D29V1, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           18                            140
  CLUS_2                            4                             92
  CLUS_3                           10                            127
  CLUS_4                           10                            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED       15      8      7     12
  DEL PEAK  5(1Q42.11) WILD-TYPE    133     94     93    146
D29V2, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           15                            133
  CLUS_2                            8                             94
  CLUS_3                            7                             93
  CLUS_4                           12                            146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED       15     13      6     14
  DEL PEAK  5(1Q42.11) WILD-TYPE    128    174     84    112
D29V3, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           15                            128
  CLUS_2                           13                            174
  CLUS_3                            6                             84
  CLUS_4                           14                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED       21     12     15
  DEL PEAK  5(1Q42.11) WILD-TYPE    272    112    114
D29V4, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           21                            272
  CLUS_2                           12                            112
  CLUS_3                           15                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED       28     12     11
  DEL PEAK  5(1Q42.11) WILD-TYPE    227    185    114
D29V5, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           28                            227
  CLUS_2                           12                            185
  CLUS_3                           11                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED        7      3      8      5
  DEL PEAK  5(1Q42.11) WILD-TYPE     63     39     73     77
D29V6, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            7                             63
  CLUS_2                            3                             39
  CLUS_3                            8                             73
  CLUS_4                            5                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(1Q42.11) MUTATED        4      8      6      3      4
  DEL PEAK  5(1Q42.11) WILD-TYPE     40     49     38     27     41
D29V7, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            4                             40
  CLUS_2                            8                             49
  CLUS_3                            6                             38
  CLUS_4                            3                             27
  CLUS_5                            4                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED       15      9      1
  DEL PEAK  5(1Q42.11) WILD-TYPE     75     61     59
D29V8, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           15                             75
  CLUS_2                            9                             61
  CLUS_3                            1                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED        5      6      1
  DEL PEAK  5(1Q42.11) WILD-TYPE     40     62     33
D29V9, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            5                             40
  CLUS_2                            6                             62
  CLUS_3                            1                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED        5      6      1
  DEL PEAK  5(1Q42.11) WILD-TYPE     25     86     24
D29V10, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                            6                             86
  CLUS_3                            1                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  6(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED        8      4      8      8
  DEL PEAK  6(1Q44) WILD-TYPE    150     92    129    109
D30V1, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         8                         150
  CLUS_2                         4                          92
  CLUS_3                         8                         129
  CLUS_4                         8                         109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED        7      9      5      7
  DEL PEAK  6(1Q44) WILD-TYPE    141     93     95    151
D30V2, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         7                         141
  CLUS_2                         9                          93
  CLUS_3                         5                          95
  CLUS_4                         7                         151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED        8     15      5      6
  DEL PEAK  6(1Q44) WILD-TYPE    135    172     85    120
D30V3, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         8                         135
  CLUS_2                        15                         172
  CLUS_3                         5                          85
  CLUS_4                         6                         120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED       15      7     12
  DEL PEAK  6(1Q44) WILD-TYPE    278    117    117
D30V4, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        15                         278
  CLUS_2                         7                         117
  CLUS_3                        12                         117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED       18      9      8
  DEL PEAK  6(1Q44) WILD-TYPE    237    188    117
D30V5, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        18                         237
  CLUS_2                         9                         188
  CLUS_3                         8                         117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED        2      3      5      4
  DEL PEAK  6(1Q44) WILD-TYPE     68     39     76     78
D30V6, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         2                          68
  CLUS_2                         3                          39
  CLUS_3                         5                          76
  CLUS_4                         4                          78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(1Q44) MUTATED        4      5      4      1      2
  DEL PEAK  6(1Q44) WILD-TYPE     40     52     40     29     43
D30V7, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         4                          40
  CLUS_2                         5                          52
  CLUS_3                         4                          40
  CLUS_4                         1                          29
  CLUS_5                         2                          43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED        7      7      2
  DEL PEAK  6(1Q44) WILD-TYPE     83     63     58
D30V8, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         7                          83
  CLUS_2                         7                          63
  CLUS_3                         2                          58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED        4      3      3
  DEL PEAK  6(1Q44) WILD-TYPE     41     65     31
D30V9, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         4                          41
  CLUS_2                         3                          65
  CLUS_3                         3                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED        4      5      1
  DEL PEAK  6(1Q44) WILD-TYPE     26     87     24
D30V10, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         4                          26
  CLUS_2                         5                          87
  CLUS_3                         1                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  7(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED        9     19      6      7
  DEL PEAK  7(2Q22.1) WILD-TYPE    149     77    131    110
D31V1, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           9                           149
  CLUS_2                          19                            77
  CLUS_3                           6                           131
  CLUS_4                           7                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED        9     16      5     11
  DEL PEAK  7(2Q22.1) WILD-TYPE    139     86     95    147
D31V2, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           9                           139
  CLUS_2                          16                            86
  CLUS_3                           5                            95
  CLUS_4                          11                           147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED       10     16      9      7
  DEL PEAK  7(2Q22.1) WILD-TYPE    133    171     81    119
D31V3, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          10                           133
  CLUS_2                          16                           171
  CLUS_3                           9                            81
  CLUS_4                           7                           119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED       23      7     12
  DEL PEAK  7(2Q22.1) WILD-TYPE    270    117    117
D31V4, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          23                           270
  CLUS_2                           7                           117
  CLUS_3                          12                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED       22     23      2
  DEL PEAK  7(2Q22.1) WILD-TYPE    233    174    123
D31V5, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          22                           233
  CLUS_2                          23                           174
  CLUS_3                           2                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED        4      1     11      8
  DEL PEAK  7(2Q22.1) WILD-TYPE     66     41     70     74
D31V6, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                           1                            41
  CLUS_3                          11                            70
  CLUS_4                           8                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(2Q22.1) MUTATED        2      5      1      6      3
  DEL PEAK  7(2Q22.1) WILD-TYPE     42     52     43     24     42
D31V7, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           2                            42
  CLUS_2                           5                            52
  CLUS_3                           1                            43
  CLUS_4                           6                            24
  CLUS_5                           3                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED        8      4      5
  DEL PEAK  7(2Q22.1) WILD-TYPE     82     66     55
D31V8, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           8                            82
  CLUS_2                           4                            66
  CLUS_3                           5                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED        6      4      1
  DEL PEAK  7(2Q22.1) WILD-TYPE     39     64     33
D31V9, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           6                            39
  CLUS_2                           4                            64
  CLUS_3                           1                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED        4      6      1
  DEL PEAK  7(2Q22.1) WILD-TYPE     26     86     24
D31V10, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                           6                            86
  CLUS_3                           1                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  8(2Q37.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED       12     18      9     10
  DEL PEAK  8(2Q37.1) WILD-TYPE    146     78    128    107
D32V1, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          12                           146
  CLUS_2                          18                            78
  CLUS_3                           9                           128
  CLUS_4                          10                           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED       10     20      7     12
  DEL PEAK  8(2Q37.1) WILD-TYPE    138     82     93    146
D32V2, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          10                           138
  CLUS_2                          20                            82
  CLUS_3                           7                            93
  CLUS_4                          12                           146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED       10     20     11     12
  DEL PEAK  8(2Q37.1) WILD-TYPE    133    167     79    114
D32V3, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          10                           133
  CLUS_2                          20                           167
  CLUS_3                          11                            79
  CLUS_4                          12                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED       30     10     13
  DEL PEAK  8(2Q37.1) WILD-TYPE    263    114    116
D32V4, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          30                           263
  CLUS_2                          10                           114
  CLUS_3                          13                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED       30     19      6
  DEL PEAK  8(2Q37.1) WILD-TYPE    225    178    119
D32V5, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          30                           225
  CLUS_2                          19                           178
  CLUS_3                           6                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED        3      3     13      8
  DEL PEAK  8(2Q37.1) WILD-TYPE     67     39     68     74
D32V6, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                           3                            67
  CLUS_2                           3                            39
  CLUS_3                          13                            68
  CLUS_4                           8                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(2Q37.1) MUTATED        3      8      3      5      1
  DEL PEAK  8(2Q37.1) WILD-TYPE     41     49     41     25     44
D32V7, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                           3                            41
  CLUS_2                           8                            49
  CLUS_3                           3                            41
  CLUS_4                           5                            25
  CLUS_5                           1                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED       10      4      6
  DEL PEAK  8(2Q37.1) WILD-TYPE     80     66     54
D32V8, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          10                            80
  CLUS_2                           4                            66
  CLUS_3                           6                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED        6      4      1
  DEL PEAK  8(2Q37.1) WILD-TYPE     39     64     33
D32V9, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                           6                            39
  CLUS_2                           4                            64
  CLUS_3                           1                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED        5      6      0
  DEL PEAK  8(2Q37.1) WILD-TYPE     25     86     25
D32V10, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                           6                            86
  CLUS_3                           0                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  9(3P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.1) MUTATED       10     13     14     13
  DEL PEAK  9(3P21.1) WILD-TYPE    148     83    123    104
D33V1, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                          10                           148
  CLUS_2                          13                            83
  CLUS_3                          14                           123
  CLUS_4                          13                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.1) MUTATED       10     16      8     16
  DEL PEAK  9(3P21.1) WILD-TYPE    138     86     92    142
D33V2, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                          10                           138
  CLUS_2                          16                            86
  CLUS_3                           8                            92
  CLUS_4                          16                           142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.1) MUTATED       15     21      6     11
  DEL PEAK  9(3P21.1) WILD-TYPE    128    166     84    115
D33V3, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                          15                           128
  CLUS_2                          21                           166
  CLUS_3                           6                            84
  CLUS_4                          11                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.1) MUTATED       29     15      9
  DEL PEAK  9(3P21.1) WILD-TYPE    264    109    120
D33V4, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                          29                           264
  CLUS_2                          15                           109
  CLUS_3                           9                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.1) MUTATED       29     22      3
  DEL PEAK  9(3P21.1) WILD-TYPE    226    175    122
D33V5, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                          29                           226
  CLUS_2                          22                           175
  CLUS_3                           3                           122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.1) MUTATED        5      4      6     12
  DEL PEAK  9(3P21.1) WILD-TYPE     65     38     75     70
D33V6, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           5                            65
  CLUS_2                           4                            38
  CLUS_3                           6                            75
  CLUS_4                          12                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P21.1) MUTATED        2      5      3      2     10
  DEL PEAK  9(3P21.1) WILD-TYPE     42     52     41     28     35
D33V7, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           2                            42
  CLUS_2                           5                            52
  CLUS_3                           3                            41
  CLUS_4                           2                            28
  CLUS_5                          10                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.1) MUTATED        8      9      5
  DEL PEAK  9(3P21.1) WILD-TYPE     82     61     55
D33V8, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           8                            82
  CLUS_2                           9                            61
  CLUS_3                           5                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.1) MUTATED        4      7      1
  DEL PEAK  9(3P21.1) WILD-TYPE     41     61     33
D33V9, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           4                            41
  CLUS_2                           7                            61
  CLUS_3                           1                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.1) MUTATED        1     11      0
  DEL PEAK  9(3P21.1) WILD-TYPE     29     81     25
D33V10, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           1                            29
  CLUS_2                          11                            81
  CLUS_3                           0                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 10(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED       12      9     13     16
  DEL PEAK 10(3Q13.31) WILD-TYPE    146     87    124    101
D34V1, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           12                            146
  CLUS_2                            9                             87
  CLUS_3                           13                            124
  CLUS_4                           16                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED       12     10      7     21
  DEL PEAK 10(3Q13.31) WILD-TYPE    136     92     93    137
D34V2, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           12                            136
  CLUS_2                           10                             92
  CLUS_3                            7                             93
  CLUS_4                           21                            137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED       13     18      9     14
  DEL PEAK 10(3Q13.31) WILD-TYPE    130    169     81    112
D34V3, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           13                            130
  CLUS_2                           18                            169
  CLUS_3                            9                             81
  CLUS_4                           14                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED       29     15     10
  DEL PEAK 10(3Q13.31) WILD-TYPE    264    109    119
D34V4, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           29                            264
  CLUS_2                           15                            109
  CLUS_3                           10                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED       34     20      2
  DEL PEAK 10(3Q13.31) WILD-TYPE    221    177    123
D34V5, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           34                            221
  CLUS_2                           20                            177
  CLUS_3                            2                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED        8      6      4     11
  DEL PEAK 10(3Q13.31) WILD-TYPE     62     36     77     71
D34V6, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            8                             62
  CLUS_2                            6                             36
  CLUS_3                            4                             77
  CLUS_4                           11                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3Q13.31) MUTATED        2      7      3      1      8
  DEL PEAK 10(3Q13.31) WILD-TYPE     42     50     41     29     37
D34V7, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            2                             42
  CLUS_2                            7                             50
  CLUS_3                            3                             41
  CLUS_4                            1                             29
  CLUS_5                            8                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED        7     11      3
  DEL PEAK 10(3Q13.31) WILD-TYPE     83     59     57
D34V8, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            7                             83
  CLUS_2                           11                             59
  CLUS_3                            3                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED        3      5      2
  DEL PEAK 10(3Q13.31) WILD-TYPE     42     63     32
D34V9, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            3                             42
  CLUS_2                            5                             63
  CLUS_3                            2                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED        0      9      1
  DEL PEAK 10(3Q13.31) WILD-TYPE     30     83     24
D34V10, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            0                             30
  CLUS_2                            9                             83
  CLUS_3                            1                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 11(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q29) MUTATED       10     12     21     14
  DEL PEAK 11(3Q29) WILD-TYPE    148     84    116    103
D35V1, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        10                         148
  CLUS_2                        12                          84
  CLUS_3                        21                         116
  CLUS_4                        14                         103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q29) MUTATED       10     12     14     21
  DEL PEAK 11(3Q29) WILD-TYPE    138     90     86    137
D35V2, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        10                         138
  CLUS_2                        12                          90
  CLUS_3                        14                          86
  CLUS_4                        21                         137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q29) MUTATED       15     25      8     16
  DEL PEAK 11(3Q29) WILD-TYPE    128    162     82    110
D35V3, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        15                         128
  CLUS_2                        25                         162
  CLUS_3                         8                          82
  CLUS_4                        16                         110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q29) MUTATED       33     16     15
  DEL PEAK 11(3Q29) WILD-TYPE    260    108    114
D35V4, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        33                         260
  CLUS_2                        16                         108
  CLUS_3                        15                         114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q29) MUTATED       30     24     11
  DEL PEAK 11(3Q29) WILD-TYPE    225    173    114
D35V5, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        30                         225
  CLUS_2                        24                         173
  CLUS_3                        11                         114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q29) MUTATED        4      7      9     11
  DEL PEAK 11(3Q29) WILD-TYPE     66     35     72     71
D35V6, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                         4                          66
  CLUS_2                         7                          35
  CLUS_3                         9                          72
  CLUS_4                        11                          71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(3Q29) MUTATED        2      7      3      5     11
  DEL PEAK 11(3Q29) WILD-TYPE     42     50     41     25     34
D35V7, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                         2                          42
  CLUS_2                         7                          50
  CLUS_3                         3                          41
  CLUS_4                         5                          25
  CLUS_5                        11                          34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q29) MUTATED        7     13      8
  DEL PEAK 11(3Q29) WILD-TYPE     83     57     52
D35V8, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                         7                          83
  CLUS_2                        13                          57
  CLUS_3                         8                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q29) MUTATED        7      9      5
  DEL PEAK 11(3Q29) WILD-TYPE     38     59     29
D35V9, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                         7                          38
  CLUS_2                         9                          59
  CLUS_3                         5                          29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q29) MUTATED        3     14      4
  DEL PEAK 11(3Q29) WILD-TYPE     27     78     21
D35V10, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                         3                          27
  CLUS_2                        14                          78
  CLUS_3                         4                          21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 12(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4P16.3) MUTATED       20     20     12     19
  DEL PEAK 12(4P16.3) WILD-TYPE    138     76    125     98
D36V1, multiclass
        clus
vv       DEL PEAK 12(4P16.3) MUTATED DEL PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                          20                           138
  CLUS_2                          20                            76
  CLUS_3                          12                           125
  CLUS_4                          19                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4P16.3) MUTATED       19     25      7     20
  DEL PEAK 12(4P16.3) WILD-TYPE    129     77     93    138
D36V2, multiclass
        clus
vv       DEL PEAK 12(4P16.3) MUTATED DEL PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                          19                           129
  CLUS_2                          25                            77
  CLUS_3                           7                            93
  CLUS_4                          20                           138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4P16.3) MUTATED       14     35     10     16
  DEL PEAK 12(4P16.3) WILD-TYPE    129    152     80    110
D36V3, multiclass
        clus
vv       DEL PEAK 12(4P16.3) MUTATED DEL PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                          14                           129
  CLUS_2                          35                           152
  CLUS_3                          10                            80
  CLUS_4                          16                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4P16.3) MUTATED       47     13     15
  DEL PEAK 12(4P16.3) WILD-TYPE    246    111    114
D36V4, multiclass
        clus
vv       DEL PEAK 12(4P16.3) MUTATED DEL PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                          47                           246
  CLUS_2                          13                           111
  CLUS_3                          15                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4P16.3) MUTATED       32     37      9
  DEL PEAK 12(4P16.3) WILD-TYPE    223    160    116
D36V5, multiclass
        clus
vv       DEL PEAK 12(4P16.3) MUTATED DEL PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                          32                           223
  CLUS_2                          37                           160
  CLUS_3                           9                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4P16.3) MUTATED        2      2     10     19
  DEL PEAK 12(4P16.3) WILD-TYPE     68     40     71     63
D36V6, multiclass
        clus
vv       DEL PEAK 12(4P16.3) MUTATED DEL PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                           2                            68
  CLUS_2                           2                            40
  CLUS_3                          10                            71
  CLUS_4                          19                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4P16.3) MUTATED        5     10      6      6      5
  DEL PEAK 12(4P16.3) WILD-TYPE     39     47     38     24     40
D36V7, multiclass
        clus
vv       DEL PEAK 12(4P16.3) MUTATED DEL PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                           5                            39
  CLUS_2                          10                            47
  CLUS_3                           6                            38
  CLUS_4                           6                            24
  CLUS_5                           5                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4P16.3) MUTATED       12     10     10
  DEL PEAK 12(4P16.3) WILD-TYPE     78     60     50
D36V8, multiclass
        clus
vv       DEL PEAK 12(4P16.3) MUTATED DEL PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                          12                            78
  CLUS_2                          10                            60
  CLUS_3                          10                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4P16.3) MUTATED        8      9      5
  DEL PEAK 12(4P16.3) WILD-TYPE     37     59     29
D36V9, multiclass
        clus
vv       DEL PEAK 12(4P16.3) MUTATED DEL PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                           8                            37
  CLUS_2                           9                            59
  CLUS_3                           5                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4P16.3) MUTATED        5     14      3
  DEL PEAK 12(4P16.3) WILD-TYPE     25     78     22
D36V10, multiclass
        clus
vv       DEL PEAK 12(4P16.3) MUTATED DEL PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          14                            78
  CLUS_3                           3                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 13(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q34.3) MUTATED       18     23     15     25
  DEL PEAK 13(4Q34.3) WILD-TYPE    140     73    122     92
D37V1, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          18                           140
  CLUS_2                          23                            73
  CLUS_3                          15                           122
  CLUS_4                          25                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q34.3) MUTATED       17     31     10     23
  DEL PEAK 13(4Q34.3) WILD-TYPE    131     71     90    135
D37V2, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          17                           131
  CLUS_2                          31                            71
  CLUS_3                          10                            90
  CLUS_4                          23                           135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q34.3) MUTATED       15     40     14     18
  DEL PEAK 13(4Q34.3) WILD-TYPE    128    147     76    108
D37V3, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          15                           128
  CLUS_2                          40                           147
  CLUS_3                          14                            76
  CLUS_4                          18                           108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q34.3) MUTATED       55     13     19
  DEL PEAK 13(4Q34.3) WILD-TYPE    238    111    110
D37V4, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          55                           238
  CLUS_2                          13                           111
  CLUS_3                          19                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q34.3) MUTATED       42     43      8
  DEL PEAK 13(4Q34.3) WILD-TYPE    213    154    117
D37V5, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          42                           213
  CLUS_2                          43                           154
  CLUS_3                           8                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q34.3) MUTATED        6      3     15     21
  DEL PEAK 13(4Q34.3) WILD-TYPE     64     39     66     61
D37V6, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                           6                            64
  CLUS_2                           3                            39
  CLUS_3                          15                            66
  CLUS_4                          21                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q34.3) MUTATED        5      9      9     10      8
  DEL PEAK 13(4Q34.3) WILD-TYPE     39     48     35     20     37
D37V7, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                           5                            39
  CLUS_2                           9                            48
  CLUS_3                           9                            35
  CLUS_4                          10                            20
  CLUS_5                           8                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q34.3) MUTATED       12     19     10
  DEL PEAK 13(4Q34.3) WILD-TYPE     78     51     50
D37V8, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          12                            78
  CLUS_2                          19                            51
  CLUS_3                          10                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q34.3) MUTATED       13      9      8
  DEL PEAK 13(4Q34.3) WILD-TYPE     32     59     26
D37V9, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          13                            32
  CLUS_2                           9                            59
  CLUS_3                           8                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q34.3) MUTATED        9     19      2
  DEL PEAK 13(4Q34.3) WILD-TYPE     21     73     23
D37V10, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                           9                            21
  CLUS_2                          19                            73
  CLUS_3                           2                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 14(5Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q34) MUTATED        8     26     12     17
  DEL PEAK 14(5Q34) WILD-TYPE    150     70    125    100
D38V1, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                         8                         150
  CLUS_2                        26                          70
  CLUS_3                        12                         125
  CLUS_4                        17                         100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q34) MUTATED       10     31     11     11
  DEL PEAK 14(5Q34) WILD-TYPE    138     71     89    147
D38V2, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        10                         138
  CLUS_2                        31                          71
  CLUS_3                        11                          89
  CLUS_4                        11                         147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q34) MUTATED        5     37      9     11
  DEL PEAK 14(5Q34) WILD-TYPE    138    150     81    115
D38V3, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                         5                         138
  CLUS_2                        37                         150
  CLUS_3                         9                          81
  CLUS_4                        11                         115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q34) MUTATED       42      5     15
  DEL PEAK 14(5Q34) WILD-TYPE    251    119    114
D38V4, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        42                         251
  CLUS_2                         5                         119
  CLUS_3                        15                         114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q34) MUTATED       39     20     11
  DEL PEAK 14(5Q34) WILD-TYPE    216    177    114
D38V5, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        39                         216
  CLUS_2                        20                         177
  CLUS_3                        11                         114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q34) MUTATED        3      1     10     21
  DEL PEAK 14(5Q34) WILD-TYPE     67     41     71     61
D38V6, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                         3                          67
  CLUS_2                         1                          41
  CLUS_3                        10                          71
  CLUS_4                        21                          61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q34) MUTATED        3      6      7      5      5
  DEL PEAK 14(5Q34) WILD-TYPE     41     51     37     25     40
D38V7, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                         3                          41
  CLUS_2                         6                          51
  CLUS_3                         7                          37
  CLUS_4                         5                          25
  CLUS_5                         5                          40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q34) MUTATED        8     14      4
  DEL PEAK 14(5Q34) WILD-TYPE     82     56     56
D38V8, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                         8                          82
  CLUS_2                        14                          56
  CLUS_3                         4                          56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q34) MUTATED       11     10      4
  DEL PEAK 14(5Q34) WILD-TYPE     34     58     30
D38V9, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        11                          34
  CLUS_2                        10                          58
  CLUS_3                         4                          30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q34) MUTATED        9     13      3
  DEL PEAK 14(5Q34) WILD-TYPE     21     79     22
D38V10, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                         9                          21
  CLUS_2                        13                          79
  CLUS_3                         3                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 15(6Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6Q22.1) MUTATED       45     25     39     32
  DEL PEAK 15(6Q22.1) WILD-TYPE    113     71     98     85
D39V1, multiclass
        clus
vv       DEL PEAK 15(6Q22.1) MUTATED DEL PEAK 15(6Q22.1) WILD-TYPE
  CLUS_1                          45                           113
  CLUS_2                          25                            71
  CLUS_3                          39                            98
  CLUS_4                          32                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6Q22.1) MUTATED       40     30     29     42
  DEL PEAK 15(6Q22.1) WILD-TYPE    108     72     71    116
D39V2, multiclass
        clus
vv       DEL PEAK 15(6Q22.1) MUTATED DEL PEAK 15(6Q22.1) WILD-TYPE
  CLUS_1                          40                           108
  CLUS_2                          30                            72
  CLUS_3                          29                            71
  CLUS_4                          42                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6Q22.1) MUTATED       39     61     19     28
  DEL PEAK 15(6Q22.1) WILD-TYPE    104    126     71     98
D39V3, multiclass
        clus
vv       DEL PEAK 15(6Q22.1) MUTATED DEL PEAK 15(6Q22.1) WILD-TYPE
  CLUS_1                          39                           104
  CLUS_2                          61                           126
  CLUS_3                          19                            71
  CLUS_4                          28                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6Q22.1) MUTATED       77     31     39
  DEL PEAK 15(6Q22.1) WILD-TYPE    216     93     90
D39V4, multiclass
        clus
vv       DEL PEAK 15(6Q22.1) MUTATED DEL PEAK 15(6Q22.1) WILD-TYPE
  CLUS_1                          77                           216
  CLUS_2                          31                            93
  CLUS_3                          39                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6Q22.1) MUTATED       67     60     28
  DEL PEAK 15(6Q22.1) WILD-TYPE    188    137     97
D39V5, multiclass
        clus
vv       DEL PEAK 15(6Q22.1) MUTATED DEL PEAK 15(6Q22.1) WILD-TYPE
  CLUS_1                          67                           188
  CLUS_2                          60                           137
  CLUS_3                          28                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6Q22.1) MUTATED       17     14     21     16
  DEL PEAK 15(6Q22.1) WILD-TYPE     53     28     60     66
D39V6, multiclass
        clus
vv       DEL PEAK 15(6Q22.1) MUTATED DEL PEAK 15(6Q22.1) WILD-TYPE
  CLUS_1                          17                            53
  CLUS_2                          14                            28
  CLUS_3                          21                            60
  CLUS_4                          16                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(6Q22.1) MUTATED       15     13      4      9     15
  DEL PEAK 15(6Q22.1) WILD-TYPE     29     44     40     21     30
D39V7, multiclass
        clus
vv       DEL PEAK 15(6Q22.1) MUTATED DEL PEAK 15(6Q22.1) WILD-TYPE
  CLUS_1                          15                            29
  CLUS_2                          13                            44
  CLUS_3                           4                            40
  CLUS_4                           9                            21
  CLUS_5                          15                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6Q22.1) MUTATED       27     14     15
  DEL PEAK 15(6Q22.1) WILD-TYPE     63     56     45
D39V8, multiclass
        clus
vv       DEL PEAK 15(6Q22.1) MUTATED DEL PEAK 15(6Q22.1) WILD-TYPE
  CLUS_1                          27                            63
  CLUS_2                          14                            56
  CLUS_3                          15                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6Q22.1) MUTATED       13     27     12
  DEL PEAK 15(6Q22.1) WILD-TYPE     32     41     22
D39V9, multiclass
        clus
vv       DEL PEAK 15(6Q22.1) MUTATED DEL PEAK 15(6Q22.1) WILD-TYPE
  CLUS_1                          13                            32
  CLUS_2                          27                            41
  CLUS_3                          12                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6Q22.1) MUTATED        5     37     10
  DEL PEAK 15(6Q22.1) WILD-TYPE     25     55     15
D39V10, multiclass
        clus
vv       DEL PEAK 15(6Q22.1) MUTATED DEL PEAK 15(6Q22.1) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          37                            55
  CLUS_3                          10                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 16(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q26) MUTATED       50     30     47     33
  DEL PEAK 16(6Q26) WILD-TYPE    108     66     90     84
D40V1, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        50                         108
  CLUS_2                        30                          66
  CLUS_3                        47                          90
  CLUS_4                        33                          84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q26) MUTATED       46     28     33     53
  DEL PEAK 16(6Q26) WILD-TYPE    102     74     67    105
D40V2, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        46                         102
  CLUS_2                        28                          74
  CLUS_3                        33                          67
  CLUS_4                        53                         105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q26) MUTATED       44     67     24     36
  DEL PEAK 16(6Q26) WILD-TYPE     99    120     66     90
D40V3, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        44                          99
  CLUS_2                        67                         120
  CLUS_3                        24                          66
  CLUS_4                        36                          90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       86     41     44
  DEL PEAK 16(6Q26) WILD-TYPE    207     83     85
D40V4, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        86                         207
  CLUS_2                        41                          83
  CLUS_3                        44                          85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       79     61     39
  DEL PEAK 16(6Q26) WILD-TYPE    176    136     86
D40V5, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        79                         176
  CLUS_2                        61                         136
  CLUS_3                        39                          86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q26) MUTATED       24     21     24     14
  DEL PEAK 16(6Q26) WILD-TYPE     46     21     57     68
D40V6, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        24                          46
  CLUS_2                        21                          21
  CLUS_3                        24                          57
  CLUS_4                        14                          68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6Q26) MUTATED       20     19      3     11     21
  DEL PEAK 16(6Q26) WILD-TYPE     24     38     41     19     24
D40V7, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        20                          24
  CLUS_2                        19                          38
  CLUS_3                         3                          41
  CLUS_4                        11                          19
  CLUS_5                        21                          24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       33     16     25
  DEL PEAK 16(6Q26) WILD-TYPE     57     54     35
D40V8, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        33                          57
  CLUS_2                        16                          54
  CLUS_3                        25                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       15     27     14
  DEL PEAK 16(6Q26) WILD-TYPE     30     41     20
D40V9, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        15                          30
  CLUS_2                        27                          41
  CLUS_3                        14                          20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED        5     39     12
  DEL PEAK 16(6Q26) WILD-TYPE     25     53     13
D40V10, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         5                          25
  CLUS_2                        39                          53
  CLUS_3                        12                          13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 17(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(8P23.2) MUTATED       25      8     13     13
  DEL PEAK 17(8P23.2) WILD-TYPE    133     88    124    104
D41V1, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          25                           133
  CLUS_2                           8                            88
  CLUS_3                          13                           124
  CLUS_4                          13                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(8P23.2) MUTATED       24     11      9     15
  DEL PEAK 17(8P23.2) WILD-TYPE    124     91     91    143
D41V2, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          24                           124
  CLUS_2                          11                            91
  CLUS_3                           9                            91
  CLUS_4                          15                           143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(8P23.2) MUTATED       23     20      6     15
  DEL PEAK 17(8P23.2) WILD-TYPE    120    167     84    111
D41V3, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          23                           120
  CLUS_2                          20                           167
  CLUS_3                           6                            84
  CLUS_4                          15                           111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.2) MUTATED       29     19     16
  DEL PEAK 17(8P23.2) WILD-TYPE    264    105    113
D41V4, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          29                           264
  CLUS_2                          19                           105
  CLUS_3                          16                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.2) MUTATED       31     26      9
  DEL PEAK 17(8P23.2) WILD-TYPE    224    171    116
D41V5, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          31                           224
  CLUS_2                          26                           171
  CLUS_3                           9                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(8P23.2) MUTATED       11      6      9      9
  DEL PEAK 17(8P23.2) WILD-TYPE     59     36     72     73
D41V6, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          11                            59
  CLUS_2                           6                            36
  CLUS_3                           9                            72
  CLUS_4                           9                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(8P23.2) MUTATED        3      5      4      3      4
  DEL PEAK 17(8P23.2) WILD-TYPE     41     52     40     27     41
D41V7, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                           3                            41
  CLUS_2                           5                            52
  CLUS_3                           4                            40
  CLUS_4                           3                            27
  CLUS_5                           4                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.2) MUTATED        8      5      6
  DEL PEAK 17(8P23.2) WILD-TYPE     82     65     54
D41V8, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                           8                            82
  CLUS_2                           5                            65
  CLUS_3                           6                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.2) MUTATED        3      8      3
  DEL PEAK 17(8P23.2) WILD-TYPE     42     60     31
D41V9, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                           3                            42
  CLUS_2                           8                            60
  CLUS_3                           3                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.2) MUTATED        1     10      3
  DEL PEAK 17(8P23.2) WILD-TYPE     29     82     22
D41V10, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                           1                            29
  CLUS_2                          10                            82
  CLUS_3                           3                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 18(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9P21.3) MUTATED      107     63    121     78
  DEL PEAK 18(9P21.3) WILD-TYPE     51     33     16     39
D42V1, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                         107                            51
  CLUS_2                          63                            33
  CLUS_3                         121                            16
  CLUS_4                          78                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9P21.3) MUTATED      102     61     91    115
  DEL PEAK 18(9P21.3) WILD-TYPE     46     41      9     43
D42V2, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                         102                            46
  CLUS_2                          61                            41
  CLUS_3                          91                             9
  CLUS_4                         115                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9P21.3) MUTATED      105    129     67     95
  DEL PEAK 18(9P21.3) WILD-TYPE     38     58     23     31
D42V3, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                         105                            38
  CLUS_2                         129                            58
  CLUS_3                          67                            23
  CLUS_4                          95                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED      199     96    101
  DEL PEAK 18(9P21.3) WILD-TYPE     94     28     28
D42V4, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                         199                            94
  CLUS_2                          96                            28
  CLUS_3                         101                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED      165    136    120
  DEL PEAK 18(9P21.3) WILD-TYPE     90     61      5
D42V5, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                         165                            90
  CLUS_2                         136                            61
  CLUS_3                         120                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9P21.3) MUTATED       43     39     67     58
  DEL PEAK 18(9P21.3) WILD-TYPE     27      3     14     24
D42V6, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          43                            27
  CLUS_2                          39                             3
  CLUS_3                          67                            14
  CLUS_4                          58                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9P21.3) MUTATED       36     46     32     19     41
  DEL PEAK 18(9P21.3) WILD-TYPE      8     11     12     11      4
D42V7, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          36                             8
  CLUS_2                          46                            11
  CLUS_3                          32                            12
  CLUS_4                          19                            11
  CLUS_5                          41                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       72     49     53
  DEL PEAK 18(9P21.3) WILD-TYPE     18     21      7
D42V8, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          72                            18
  CLUS_2                          49                            21
  CLUS_3                          53                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       25     53     25
  DEL PEAK 18(9P21.3) WILD-TYPE     20     15      9
D42V9, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          25                            20
  CLUS_2                          53                            15
  CLUS_3                          25                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       14     71     18
  DEL PEAK 18(9P21.3) WILD-TYPE     16     21      7
D42V10, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          14                            16
  CLUS_2                          71                            21
  CLUS_3                          18                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 19(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9Q34.2) MUTATED       15     10     25     17
  DEL PEAK 19(9Q34.2) WILD-TYPE    143     86    112    100
D43V1, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          15                           143
  CLUS_2                          10                            86
  CLUS_3                          25                           112
  CLUS_4                          17                           100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9Q34.2) MUTATED       17      8     19     23
  DEL PEAK 19(9Q34.2) WILD-TYPE    131     94     81    135
D43V2, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          17                           131
  CLUS_2                           8                            94
  CLUS_3                          19                            81
  CLUS_4                          23                           135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9Q34.2) MUTATED       15     27      9     20
  DEL PEAK 19(9Q34.2) WILD-TYPE    128    160     81    106
D43V3, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          15                           128
  CLUS_2                          27                           160
  CLUS_3                           9                            81
  CLUS_4                          20                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED       32     21     18
  DEL PEAK 19(9Q34.2) WILD-TYPE    261    103    111
D43V4, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          32                           261
  CLUS_2                          21                           103
  CLUS_3                          18                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED       37     27     15
  DEL PEAK 19(9Q34.2) WILD-TYPE    218    170    110
D43V5, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          37                           218
  CLUS_2                          27                           170
  CLUS_3                          15                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9Q34.2) MUTATED       12      7      9     12
  DEL PEAK 19(9Q34.2) WILD-TYPE     58     35     72     70
D43V6, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          12                            58
  CLUS_2                           7                            35
  CLUS_3                           9                            72
  CLUS_4                          12                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q34.2) MUTATED        7      9      3      0      6
  DEL PEAK 19(9Q34.2) WILD-TYPE     37     48     41     30     39
D43V7, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                           7                            37
  CLUS_2                           9                            48
  CLUS_3                           3                            41
  CLUS_4                           0                            30
  CLUS_5                           6                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED       11      6      8
  DEL PEAK 19(9Q34.2) WILD-TYPE     79     64     52
D43V8, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          11                            79
  CLUS_2                           6                            64
  CLUS_3                           8                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED        5     13      4
  DEL PEAK 19(9Q34.2) WILD-TYPE     40     55     30
D43V9, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                           5                            40
  CLUS_2                          13                            55
  CLUS_3                           4                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED        2     17      3
  DEL PEAK 19(9Q34.2) WILD-TYPE     28     75     22
D43V10, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                           2                            28
  CLUS_2                          17                            75
  CLUS_3                           3                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 20(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10P15.3) MUTATED      136     61    125     86
  DEL PEAK 20(10P15.3) WILD-TYPE     22     35     12     31
D44V1, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                          136                             22
  CLUS_2                           61                             35
  CLUS_3                          125                             12
  CLUS_4                           86                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10P15.3) MUTATED      125     59     89    135
  DEL PEAK 20(10P15.3) WILD-TYPE     23     43     11     23
D44V2, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                          125                             23
  CLUS_2                           59                             43
  CLUS_3                           89                             11
  CLUS_4                          135                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10P15.3) MUTATED      127    142     71    103
  DEL PEAK 20(10P15.3) WILD-TYPE     16     45     19     23
D44V3, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                          127                             16
  CLUS_2                          142                             45
  CLUS_3                           71                             19
  CLUS_4                          103                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED      223    105    115
  DEL PEAK 20(10P15.3) WILD-TYPE     70     19     14
D44V4, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                          223                             70
  CLUS_2                          105                             19
  CLUS_3                          115                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED      174    187    109
  DEL PEAK 20(10P15.3) WILD-TYPE     81     10     16
D44V5, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                          174                             81
  CLUS_2                          187                             10
  CLUS_3                          109                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10P15.3) MUTATED       62     38     72     48
  DEL PEAK 20(10P15.3) WILD-TYPE      8      4      9     34
D44V6, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           62                              8
  CLUS_2                           38                              4
  CLUS_3                           72                              9
  CLUS_4                           48                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10P15.3) MUTATED       38     50     34     24     39
  DEL PEAK 20(10P15.3) WILD-TYPE      6      7     10      6      6
D44V7, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           38                              6
  CLUS_2                           50                              7
  CLUS_3                           34                             10
  CLUS_4                           24                              6
  CLUS_5                           39                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       82     49     54
  DEL PEAK 20(10P15.3) WILD-TYPE      8     21      6
D44V8, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           82                              8
  CLUS_2                           49                             21
  CLUS_3                           54                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       34     60     33
  DEL PEAK 20(10P15.3) WILD-TYPE     11      8      1
D44V9, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           34                             11
  CLUS_2                           60                              8
  CLUS_3                           33                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       19     83     25
  DEL PEAK 20(10P15.3) WILD-TYPE     11      9      0
D44V10, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           19                             11
  CLUS_2                           83                              9
  CLUS_3                           25                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 21(10P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P13) MUTATED      139     63    125     83
  DEL PEAK 21(10P13) WILD-TYPE     19     33     12     34
D45V1, multiclass
        clus
vv       DEL PEAK 21(10P13) MUTATED DEL PEAK 21(10P13) WILD-TYPE
  CLUS_1                        139                           19
  CLUS_2                         63                           33
  CLUS_3                        125                           12
  CLUS_4                         83                           34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P13) MUTATED      129     58     89    134
  DEL PEAK 21(10P13) WILD-TYPE     19     44     11     24
D45V2, multiclass
        clus
vv       DEL PEAK 21(10P13) MUTATED DEL PEAK 21(10P13) WILD-TYPE
  CLUS_1                        129                           19
  CLUS_2                         58                           44
  CLUS_3                         89                           11
  CLUS_4                        134                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P13) MUTATED      129    143     69    105
  DEL PEAK 21(10P13) WILD-TYPE     14     44     21     21
D45V3, multiclass
        clus
vv       DEL PEAK 21(10P13) MUTATED DEL PEAK 21(10P13) WILD-TYPE
  CLUS_1                        129                           14
  CLUS_2                        143                           44
  CLUS_3                         69                           21
  CLUS_4                        105                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P13) MUTATED      223    108    115
  DEL PEAK 21(10P13) WILD-TYPE     70     16     14
D45V4, multiclass
        clus
vv       DEL PEAK 21(10P13) MUTATED DEL PEAK 21(10P13) WILD-TYPE
  CLUS_1                        223                           70
  CLUS_2                        108                           16
  CLUS_3                        115                           14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P13) MUTATED      174    187    110
  DEL PEAK 21(10P13) WILD-TYPE     81     10     15
D45V5, multiclass
        clus
vv       DEL PEAK 21(10P13) MUTATED DEL PEAK 21(10P13) WILD-TYPE
  CLUS_1                        174                           81
  CLUS_2                        187                           10
  CLUS_3                        110                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P13) MUTATED       62     38     72     46
  DEL PEAK 21(10P13) WILD-TYPE      8      4      9     36
D45V6, multiclass
        clus
vv       DEL PEAK 21(10P13) MUTATED DEL PEAK 21(10P13) WILD-TYPE
  CLUS_1                         62                            8
  CLUS_2                         38                            4
  CLUS_3                         72                            9
  CLUS_4                         46                           36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10P13) MUTATED       39     51     31     24     38
  DEL PEAK 21(10P13) WILD-TYPE      5      6     13      6      7
D45V7, multiclass
        clus
vv       DEL PEAK 21(10P13) MUTATED DEL PEAK 21(10P13) WILD-TYPE
  CLUS_1                         39                            5
  CLUS_2                         51                            6
  CLUS_3                         31                           13
  CLUS_4                         24                            6
  CLUS_5                         38                            7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P13) MUTATED       83     45     55
  DEL PEAK 21(10P13) WILD-TYPE      7     25      5
D45V8, multiclass
        clus
vv       DEL PEAK 21(10P13) MUTATED DEL PEAK 21(10P13) WILD-TYPE
  CLUS_1                         83                            7
  CLUS_2                         45                           25
  CLUS_3                         55                            5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P13) MUTATED       35     60     32
  DEL PEAK 21(10P13) WILD-TYPE     10      8      2
D45V9, multiclass
        clus
vv       DEL PEAK 21(10P13) MUTATED DEL PEAK 21(10P13) WILD-TYPE
  CLUS_1                         35                           10
  CLUS_2                         60                            8
  CLUS_3                         32                            2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P13) MUTATED       20     83     24
  DEL PEAK 21(10P13) WILD-TYPE     10      9      1
D45V10, multiclass
        clus
vv       DEL PEAK 21(10P13) MUTATED DEL PEAK 21(10P13) WILD-TYPE
  CLUS_1                         20                           10
  CLUS_2                         83                            9
  CLUS_3                         24                            1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 22(10P11.23) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P11.23) MUTATED      139     60    130     87
  DEL PEAK 22(10P11.23) WILD-TYPE     19     36      7     30
D46V1, multiclass
        clus
vv       DEL PEAK 22(10P11.23) MUTATED DEL PEAK 22(10P11.23) WILD-TYPE
  CLUS_1                           139                              19
  CLUS_2                            60                              36
  CLUS_3                           130                               7
  CLUS_4                            87                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P11.23) MUTATED      127     60     93    136
  DEL PEAK 22(10P11.23) WILD-TYPE     21     42      7     22
D46V2, multiclass
        clus
vv       DEL PEAK 22(10P11.23) MUTATED DEL PEAK 22(10P11.23) WILD-TYPE
  CLUS_1                           127                              21
  CLUS_2                            60                              42
  CLUS_3                            93                               7
  CLUS_4                           136                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P11.23) MUTATED      132    145     68    105
  DEL PEAK 22(10P11.23) WILD-TYPE     11     42     22     21
D46V3, multiclass
        clus
vv       DEL PEAK 22(10P11.23) MUTATED DEL PEAK 22(10P11.23) WILD-TYPE
  CLUS_1                           132                              11
  CLUS_2                           145                              42
  CLUS_3                            68                              22
  CLUS_4                           105                              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P11.23) MUTATED      223    106    121
  DEL PEAK 22(10P11.23) WILD-TYPE     70     18      8
D46V4, multiclass
        clus
vv       DEL PEAK 22(10P11.23) MUTATED DEL PEAK 22(10P11.23) WILD-TYPE
  CLUS_1                           223                              70
  CLUS_2                           106                              18
  CLUS_3                           121                               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P11.23) MUTATED      170    189    117
  DEL PEAK 22(10P11.23) WILD-TYPE     85      8      8
D46V5, multiclass
        clus
vv       DEL PEAK 22(10P11.23) MUTATED DEL PEAK 22(10P11.23) WILD-TYPE
  CLUS_1                           170                              85
  CLUS_2                           189                               8
  CLUS_3                           117                               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P11.23) MUTATED       62     39     72     47
  DEL PEAK 22(10P11.23) WILD-TYPE      8      3      9     35
D46V6, multiclass
        clus
vv       DEL PEAK 22(10P11.23) MUTATED DEL PEAK 22(10P11.23) WILD-TYPE
  CLUS_1                            62                               8
  CLUS_2                            39                               3
  CLUS_3                            72                               9
  CLUS_4                            47                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(10P11.23) MUTATED       38     51     33     24     41
  DEL PEAK 22(10P11.23) WILD-TYPE      6      6     11      6      4
D46V7, multiclass
        clus
vv       DEL PEAK 22(10P11.23) MUTATED DEL PEAK 22(10P11.23) WILD-TYPE
  CLUS_1                            38                               6
  CLUS_2                            51                               6
  CLUS_3                            33                              11
  CLUS_4                            24                               6
  CLUS_5                            41                               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P11.23) MUTATED       81     49     57
  DEL PEAK 22(10P11.23) WILD-TYPE      9     21      3
D46V8, multiclass
        clus
vv       DEL PEAK 22(10P11.23) MUTATED DEL PEAK 22(10P11.23) WILD-TYPE
  CLUS_1                            81                               9
  CLUS_2                            49                              21
  CLUS_3                            57                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P11.23) MUTATED       35     62     32
  DEL PEAK 22(10P11.23) WILD-TYPE     10      6      2
D46V9, multiclass
        clus
vv       DEL PEAK 22(10P11.23) MUTATED DEL PEAK 22(10P11.23) WILD-TYPE
  CLUS_1                            35                              10
  CLUS_2                            62                               6
  CLUS_3                            32                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P11.23) MUTATED       20     85     24
  DEL PEAK 22(10P11.23) WILD-TYPE     10      7      1
D46V10, multiclass
        clus
vv       DEL PEAK 22(10P11.23) MUTATED DEL PEAK 22(10P11.23) WILD-TYPE
  CLUS_1                            20                              10
  CLUS_2                            85                               7
  CLUS_3                            24                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 23(10Q11.23) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q11.23) MUTATED      143     67    131     87
  DEL PEAK 23(10Q11.23) WILD-TYPE     15     29      6     30
D47V1, multiclass
        clus
vv       DEL PEAK 23(10Q11.23) MUTATED DEL PEAK 23(10Q11.23) WILD-TYPE
  CLUS_1                           143                              15
  CLUS_2                            67                              29
  CLUS_3                           131                               6
  CLUS_4                            87                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q11.23) MUTATED      129     64     96    139
  DEL PEAK 23(10Q11.23) WILD-TYPE     19     38      4     19
D47V2, multiclass
        clus
vv       DEL PEAK 23(10Q11.23) MUTATED DEL PEAK 23(10Q11.23) WILD-TYPE
  CLUS_1                           129                              19
  CLUS_2                            64                              38
  CLUS_3                            96                               4
  CLUS_4                           139                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q11.23) MUTATED      133    151     69    111
  DEL PEAK 23(10Q11.23) WILD-TYPE     10     36     21     15
D47V3, multiclass
        clus
vv       DEL PEAK 23(10Q11.23) MUTATED DEL PEAK 23(10Q11.23) WILD-TYPE
  CLUS_1                           133                              10
  CLUS_2                           151                              36
  CLUS_3                            69                              21
  CLUS_4                           111                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q11.23) MUTATED      229    112    123
  DEL PEAK 23(10Q11.23) WILD-TYPE     64     12      6
D47V4, multiclass
        clus
vv       DEL PEAK 23(10Q11.23) MUTATED DEL PEAK 23(10Q11.23) WILD-TYPE
  CLUS_1                           229                              64
  CLUS_2                           112                              12
  CLUS_3                           123                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q11.23) MUTATED      174    194    121
  DEL PEAK 23(10Q11.23) WILD-TYPE     81      3      4
D47V5, multiclass
        clus
vv       DEL PEAK 23(10Q11.23) MUTATED DEL PEAK 23(10Q11.23) WILD-TYPE
  CLUS_1                           174                              81
  CLUS_2                           194                               3
  CLUS_3                           121                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q11.23) MUTATED       61     39     76     52
  DEL PEAK 23(10Q11.23) WILD-TYPE      9      3      5     30
D47V6, multiclass
        clus
vv       DEL PEAK 23(10Q11.23) MUTATED DEL PEAK 23(10Q11.23) WILD-TYPE
  CLUS_1                            61                               9
  CLUS_2                            39                               3
  CLUS_3                            76                               5
  CLUS_4                            52                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10Q11.23) MUTATED       41     51     33     27     42
  DEL PEAK 23(10Q11.23) WILD-TYPE      3      6     11      3      3
D47V7, multiclass
        clus
vv       DEL PEAK 23(10Q11.23) MUTATED DEL PEAK 23(10Q11.23) WILD-TYPE
  CLUS_1                            41                               3
  CLUS_2                            51                               6
  CLUS_3                            33                              11
  CLUS_4                            27                               3
  CLUS_5                            42                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q11.23) MUTATED       83     51     60
  DEL PEAK 23(10Q11.23) WILD-TYPE      7     19      0
D47V8, multiclass
        clus
vv       DEL PEAK 23(10Q11.23) MUTATED DEL PEAK 23(10Q11.23) WILD-TYPE
  CLUS_1                            83                               7
  CLUS_2                            51                              19
  CLUS_3                            60                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q11.23) MUTATED       37     64     32
  DEL PEAK 23(10Q11.23) WILD-TYPE      8      4      2
D47V9, multiclass
        clus
vv       DEL PEAK 23(10Q11.23) MUTATED DEL PEAK 23(10Q11.23) WILD-TYPE
  CLUS_1                            37                               8
  CLUS_2                            64                               4
  CLUS_3                            32                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q11.23) MUTATED       22     87     24
  DEL PEAK 23(10Q11.23) WILD-TYPE      8      5      1
D47V10, multiclass
        clus
vv       DEL PEAK 23(10Q11.23) MUTATED DEL PEAK 23(10Q11.23) WILD-TYPE
  CLUS_1                            22                               8
  CLUS_2                            87                               5
  CLUS_3                            24                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 24(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED      146     76    132     95
  DEL PEAK 24(10Q23.31) WILD-TYPE     12     20      5     22
D48V1, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           146                              12
  CLUS_2                            76                              20
  CLUS_3                           132                               5
  CLUS_4                            95                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED      132     75     98    144
  DEL PEAK 24(10Q23.31) WILD-TYPE     16     27      2     14
D48V2, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           132                              16
  CLUS_2                            75                              27
  CLUS_3                            98                               2
  CLUS_4                           144                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED      135    162     75    113
  DEL PEAK 24(10Q23.31) WILD-TYPE      8     25     15     13
D48V3, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           135                               8
  CLUS_2                           162                              25
  CLUS_3                            75                              15
  CLUS_4                           113                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED      248    115    122
  DEL PEAK 24(10Q23.31) WILD-TYPE     45      9      7
D48V4, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           248                              45
  CLUS_2                           115                               9
  CLUS_3                           122                               7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED      198    194    122
  DEL PEAK 24(10Q23.31) WILD-TYPE     57      3      3
D48V5, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           198                              57
  CLUS_2                           194                               3
  CLUS_3                           122                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED       63     41     77     63
  DEL PEAK 24(10Q23.31) WILD-TYPE      7      1      4     19
D48V6, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            63                               7
  CLUS_2                            41                               1
  CLUS_3                            77                               4
  CLUS_4                            63                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(10Q23.31) MUTATED       42     51     36     27     43
  DEL PEAK 24(10Q23.31) WILD-TYPE      2      6      8      3      2
D48V7, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            42                               2
  CLUS_2                            51                               6
  CLUS_3                            36                               8
  CLUS_4                            27                               3
  CLUS_5                            43                               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       85     56     58
  DEL PEAK 24(10Q23.31) WILD-TYPE      5     14      2
D48V8, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            85                               5
  CLUS_2                            56                              14
  CLUS_3                            58                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       39     64     31
  DEL PEAK 24(10Q23.31) WILD-TYPE      6      4      3
D48V9, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            39                               6
  CLUS_2                            64                               4
  CLUS_3                            31                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       24     87     23
  DEL PEAK 24(10Q23.31) WILD-TYPE      6      5      2
D48V10, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            24                               6
  CLUS_2                            87                               5
  CLUS_3                            23                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 25(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q26.3) MUTATED      145     75    135     95
  DEL PEAK 25(10Q26.3) WILD-TYPE     13     21      2     22
D49V1, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          145                             13
  CLUS_2                           75                             21
  CLUS_3                          135                              2
  CLUS_4                           95                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q26.3) MUTATED      132     77     97    144
  DEL PEAK 25(10Q26.3) WILD-TYPE     16     25      3     14
D49V2, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          132                             16
  CLUS_2                           77                             25
  CLUS_3                           97                              3
  CLUS_4                          144                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q26.3) MUTATED      133    166     74    113
  DEL PEAK 25(10Q26.3) WILD-TYPE     10     21     16     13
D49V3, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          133                             10
  CLUS_2                          166                             21
  CLUS_3                           74                             16
  CLUS_4                          113                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q26.3) MUTATED      252    109    125
  DEL PEAK 25(10Q26.3) WILD-TYPE     41     15      4
D49V4, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          252                             41
  CLUS_2                          109                             15
  CLUS_3                          125                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q26.3) MUTATED      199    191    125
  DEL PEAK 25(10Q26.3) WILD-TYPE     56      6      0
D49V5, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          199                             56
  CLUS_2                          191                              6
  CLUS_3                          125                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q26.3) MUTATED       61     41     78     62
  DEL PEAK 25(10Q26.3) WILD-TYPE      9      1      3     20
D49V6, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           61                              9
  CLUS_2                           41                              1
  CLUS_3                           78                              3
  CLUS_4                           62                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(10Q26.3) MUTATED       41     52     38     27     43
  DEL PEAK 25(10Q26.3) WILD-TYPE      3      5      6      3      2
D49V7, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           41                              3
  CLUS_2                           52                              5
  CLUS_3                           38                              6
  CLUS_4                           27                              3
  CLUS_5                           43                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q26.3) MUTATED       83     59     59
  DEL PEAK 25(10Q26.3) WILD-TYPE      7     11      1
D49V8, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           83                              7
  CLUS_2                           59                             11
  CLUS_3                           59                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q26.3) MUTATED       39     62     33
  DEL PEAK 25(10Q26.3) WILD-TYPE      6      6      1
D49V9, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           39                              6
  CLUS_2                           62                              6
  CLUS_3                           33                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q26.3) MUTATED       24     85     25
  DEL PEAK 25(10Q26.3) WILD-TYPE      6      7      0
D49V10, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           24                              6
  CLUS_2                           85                              7
  CLUS_3                           25                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 26(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.5) MUTATED       32     42     12     33
  DEL PEAK 26(11P15.5) WILD-TYPE    126     54    125     84
D50V1, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           32                            126
  CLUS_2                           42                             54
  CLUS_3                           12                            125
  CLUS_4                           33                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.5) MUTATED       30     48      9     32
  DEL PEAK 26(11P15.5) WILD-TYPE    118     54     91    126
D50V2, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           30                            118
  CLUS_2                           48                             54
  CLUS_3                            9                             91
  CLUS_4                           32                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.5) MUTATED       27     51     24     25
  DEL PEAK 26(11P15.5) WILD-TYPE    116    136     66    101
D50V3, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           27                            116
  CLUS_2                           51                            136
  CLUS_3                           24                             66
  CLUS_4                           25                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.5) MUTATED       85     24     18
  DEL PEAK 26(11P15.5) WILD-TYPE    208    100    111
D50V4, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           85                            208
  CLUS_2                           24                            100
  CLUS_3                           18                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.5) MUTATED       76     50      6
  DEL PEAK 26(11P15.5) WILD-TYPE    179    147    119
D50V5, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           76                            179
  CLUS_2                           50                            147
  CLUS_3                            6                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.5) MUTATED       11      4     16     38
  DEL PEAK 26(11P15.5) WILD-TYPE     59     38     65     44
D50V6, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           11                             59
  CLUS_2                            4                             38
  CLUS_3                           16                             65
  CLUS_4                           38                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(11P15.5) MUTATED        7     12     13      8      6
  DEL PEAK 26(11P15.5) WILD-TYPE     37     45     31     22     39
D50V7, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                            7                             37
  CLUS_2                           12                             45
  CLUS_3                           13                             31
  CLUS_4                            8                             22
  CLUS_5                            6                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.5) MUTATED       16     22      8
  DEL PEAK 26(11P15.5) WILD-TYPE     74     48     52
D50V8, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           16                             74
  CLUS_2                           22                             48
  CLUS_3                            8                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.5) MUTATED       18     12      4
  DEL PEAK 26(11P15.5) WILD-TYPE     27     56     30
D50V9, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           18                             27
  CLUS_2                           12                             56
  CLUS_3                            4                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.5) MUTATED       14     18      2
  DEL PEAK 26(11P15.5) WILD-TYPE     16     74     23
D50V10, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           14                             16
  CLUS_2                           18                             74
  CLUS_3                            2                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 27(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       27     35      9     24
  DEL PEAK 27(11P11.2) WILD-TYPE    131     61    128     93
D51V1, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           27                            131
  CLUS_2                           35                             61
  CLUS_3                            9                            128
  CLUS_4                           24                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       27     36      5     27
  DEL PEAK 27(11P11.2) WILD-TYPE    121     66     95    131
D51V2, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           27                            121
  CLUS_2                           36                             66
  CLUS_3                            5                             95
  CLUS_4                           27                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       22     38     15     26
  DEL PEAK 27(11P11.2) WILD-TYPE    121    149     75    100
D51V3, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           22                            121
  CLUS_2                           38                            149
  CLUS_3                           15                             75
  CLUS_4                           26                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       65     22     14
  DEL PEAK 27(11P11.2) WILD-TYPE    228    102    115
D51V4, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           65                            228
  CLUS_2                           22                            102
  CLUS_3                           14                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       60     42      3
  DEL PEAK 27(11P11.2) WILD-TYPE    195    155    122
D51V5, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           60                            195
  CLUS_2                           42                            155
  CLUS_3                            3                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       13      4     13     30
  DEL PEAK 27(11P11.2) WILD-TYPE     57     38     68     52
D51V6, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           13                             57
  CLUS_2                            4                             38
  CLUS_3                           13                             68
  CLUS_4                           30                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(11P11.2) MUTATED        6     10      7      6      6
  DEL PEAK 27(11P11.2) WILD-TYPE     38     47     37     24     39
D51V7, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            6                             38
  CLUS_2                           10                             47
  CLUS_3                            7                             37
  CLUS_4                            6                             24
  CLUS_5                            6                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       13     16      6
  DEL PEAK 27(11P11.2) WILD-TYPE     77     54     54
D51V8, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           13                             77
  CLUS_2                           16                             54
  CLUS_3                            6                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       12     12      2
  DEL PEAK 27(11P11.2) WILD-TYPE     33     56     32
D51V9, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           12                             33
  CLUS_2                           12                             56
  CLUS_3                            2                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED        9     15      2
  DEL PEAK 27(11P11.2) WILD-TYPE     21     77     23
D51V10, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                           15                             77
  CLUS_3                            2                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 28(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(11Q14.1) MUTATED       30     33     11     14
  DEL PEAK 28(11Q14.1) WILD-TYPE    128     63    126    103
D52V1, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           30                            128
  CLUS_2                           33                             63
  CLUS_3                           11                            126
  CLUS_4                           14                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(11Q14.1) MUTATED       30     27      6     25
  DEL PEAK 28(11Q14.1) WILD-TYPE    118     75     94    133
D52V2, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           30                            118
  CLUS_2                           27                             75
  CLUS_3                            6                             94
  CLUS_4                           25                            133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(11Q14.1) MUTATED       23     30     17     24
  DEL PEAK 28(11Q14.1) WILD-TYPE    120    157     73    102
D52V3, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           23                            120
  CLUS_2                           30                            157
  CLUS_3                           17                             73
  CLUS_4                           24                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(11Q14.1) MUTATED       54     25     15
  DEL PEAK 28(11Q14.1) WILD-TYPE    239     99    114
D52V4, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           54                            239
  CLUS_2                           25                             99
  CLUS_3                           15                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(11Q14.1) MUTATED       47     46      3
  DEL PEAK 28(11Q14.1) WILD-TYPE    208    151    122
D52V5, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           47                            208
  CLUS_2                           46                            151
  CLUS_3                            3                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(11Q14.1) MUTATED       12      4     15     21
  DEL PEAK 28(11Q14.1) WILD-TYPE     58     38     66     61
D52V6, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           12                             58
  CLUS_2                            4                             38
  CLUS_3                           15                             66
  CLUS_4                           21                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(11Q14.1) MUTATED        6      7      3      7      6
  DEL PEAK 28(11Q14.1) WILD-TYPE     38     50     41     23     39
D52V7, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                            6                             38
  CLUS_2                            7                             50
  CLUS_3                            3                             41
  CLUS_4                            7                             23
  CLUS_5                            6                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(11Q14.1) MUTATED       13     11      5
  DEL PEAK 28(11Q14.1) WILD-TYPE     77     59     55
D52V8, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           13                             77
  CLUS_2                           11                             59
  CLUS_3                            5                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(11Q14.1) MUTATED        9     14      1
  DEL PEAK 28(11Q14.1) WILD-TYPE     36     54     33
D52V9, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                            9                             36
  CLUS_2                           14                             54
  CLUS_3                            1                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(11Q14.1) MUTATED        6     17      1
  DEL PEAK 28(11Q14.1) WILD-TYPE     24     75     24
D52V10, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           17                             75
  CLUS_3                            1                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 29(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12P13.1) MUTATED       18     16     10     20
  DEL PEAK 29(12P13.1) WILD-TYPE    140     80    127     97
D53V1, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           18                            140
  CLUS_2                           16                             80
  CLUS_3                           10                            127
  CLUS_4                           20                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12P13.1) MUTATED       17     20      5     22
  DEL PEAK 29(12P13.1) WILD-TYPE    131     82     95    136
D53V2, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           17                            131
  CLUS_2                           20                             82
  CLUS_3                            5                             95
  CLUS_4                           22                            136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12P13.1) MUTATED       18     26     15     12
  DEL PEAK 29(12P13.1) WILD-TYPE    125    161     75    114
D53V3, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           18                            125
  CLUS_2                           26                            161
  CLUS_3                           15                             75
  CLUS_4                           12                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12P13.1) MUTATED       45     12     14
  DEL PEAK 29(12P13.1) WILD-TYPE    248    112    115
D53V4, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           45                            248
  CLUS_2                           12                            112
  CLUS_3                           14                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12P13.1) MUTATED       34     28     10
  DEL PEAK 29(12P13.1) WILD-TYPE    221    169    115
D53V5, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           34                            221
  CLUS_2                           28                            169
  CLUS_3                           10                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12P13.1) MUTATED        8      0     12     16
  DEL PEAK 29(12P13.1) WILD-TYPE     62     42     69     66
D53V6, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            8                             62
  CLUS_2                            0                             42
  CLUS_3                           12                             69
  CLUS_4                           16                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(12P13.1) MUTATED        3      8      7      5      3
  DEL PEAK 29(12P13.1) WILD-TYPE     41     49     37     25     42
D53V7, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            3                             41
  CLUS_2                            8                             49
  CLUS_3                            7                             37
  CLUS_4                            5                             25
  CLUS_5                            3                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12P13.1) MUTATED        7     12      7
  DEL PEAK 29(12P13.1) WILD-TYPE     83     58     53
D53V8, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            7                             83
  CLUS_2                           12                             58
  CLUS_3                            7                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12P13.1) MUTATED        5      8      3
  DEL PEAK 29(12P13.1) WILD-TYPE     40     60     31
D53V9, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            5                             40
  CLUS_2                            8                             60
  CLUS_3                            3                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12P13.1) MUTATED        3     11      2
  DEL PEAK 29(12P13.1) WILD-TYPE     27     81     23
D53V10, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           11                             81
  CLUS_3                            2                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 30(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q12) MUTATED       18     19     10     21
  DEL PEAK 30(12Q12) WILD-TYPE    140     77    127     96
D54V1, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         18                          140
  CLUS_2                         19                           77
  CLUS_3                         10                          127
  CLUS_4                         21                           96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q12) MUTATED       19     26      6     17
  DEL PEAK 30(12Q12) WILD-TYPE    129     76     94    141
D54V2, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         19                          129
  CLUS_2                         26                           76
  CLUS_3                          6                           94
  CLUS_4                         17                          141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q12) MUTATED       15     31     12     15
  DEL PEAK 30(12Q12) WILD-TYPE    128    156     78    111
D54V3, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         15                          128
  CLUS_2                         31                          156
  CLUS_3                         12                           78
  CLUS_4                         15                          111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q12) MUTATED       47     10     16
  DEL PEAK 30(12Q12) WILD-TYPE    246    114    113
D54V4, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         47                          246
  CLUS_2                         10                          114
  CLUS_3                         16                          113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q12) MUTATED       38     35      4
  DEL PEAK 30(12Q12) WILD-TYPE    217    162    121
D54V5, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         38                          217
  CLUS_2                         35                          162
  CLUS_3                          4                          121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q12) MUTATED        7      1     12     17
  DEL PEAK 30(12Q12) WILD-TYPE     63     41     69     65
D54V6, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          7                           63
  CLUS_2                          1                           41
  CLUS_3                         12                           69
  CLUS_4                         17                           65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(12Q12) MUTATED        2     10      7      7      1
  DEL PEAK 30(12Q12) WILD-TYPE     42     47     37     23     44
D54V7, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          2                           42
  CLUS_2                         10                           47
  CLUS_3                          7                           37
  CLUS_4                          7                           23
  CLUS_5                          1                           44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q12) MUTATED        8     13      6
  DEL PEAK 30(12Q12) WILD-TYPE     82     57     54
D54V8, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          8                           82
  CLUS_2                         13                           57
  CLUS_3                          6                           54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q12) MUTATED        4      8      2
  DEL PEAK 30(12Q12) WILD-TYPE     41     60     32
D54V9, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          4                           41
  CLUS_2                          8                           60
  CLUS_3                          2                           32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q12) MUTATED        3     10      1
  DEL PEAK 30(12Q12) WILD-TYPE     27     82     24
D54V10, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          3                           27
  CLUS_2                         10                           82
  CLUS_3                          1                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 31(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12Q15) MUTATED       22     21      7     19
  DEL PEAK 31(12Q15) WILD-TYPE    136     75    130     98
D55V1, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         22                          136
  CLUS_2                         21                           75
  CLUS_3                          7                          130
  CLUS_4                         19                           98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12Q15) MUTATED       20     22      4     23
  DEL PEAK 31(12Q15) WILD-TYPE    128     80     96    135
D55V2, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         20                          128
  CLUS_2                         22                           80
  CLUS_3                          4                           96
  CLUS_4                         23                          135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12Q15) MUTATED       14     32     11     19
  DEL PEAK 31(12Q15) WILD-TYPE    129    155     79    107
D55V3, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         14                          129
  CLUS_2                         32                          155
  CLUS_3                         11                           79
  CLUS_4                         19                          107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q15) MUTATED       45     13     18
  DEL PEAK 31(12Q15) WILD-TYPE    248    111    111
D55V4, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         45                          248
  CLUS_2                         13                          111
  CLUS_3                         18                          111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q15) MUTATED       36     39      4
  DEL PEAK 31(12Q15) WILD-TYPE    219    158    121
D55V5, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         36                          219
  CLUS_2                         39                          158
  CLUS_3                          4                          121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12Q15) MUTATED        9      1     12     16
  DEL PEAK 31(12Q15) WILD-TYPE     61     41     69     66
D55V6, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                          9                           61
  CLUS_2                          1                           41
  CLUS_3                         12                           69
  CLUS_4                         16                           66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(12Q15) MUTATED        3     10      6      5      1
  DEL PEAK 31(12Q15) WILD-TYPE     41     47     38     25     44
D55V7, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                          3                           41
  CLUS_2                         10                           47
  CLUS_3                          6                           38
  CLUS_4                          5                           25
  CLUS_5                          1                           44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q15) MUTATED       10     10      5
  DEL PEAK 31(12Q15) WILD-TYPE     80     60     55
D55V8, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         10                           80
  CLUS_2                         10                           60
  CLUS_3                          5                           55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q15) MUTATED        6      9      2
  DEL PEAK 31(12Q15) WILD-TYPE     39     59     32
D55V9, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                          6                           39
  CLUS_2                          9                           59
  CLUS_3                          2                           32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q15) MUTATED        5     11      1
  DEL PEAK 31(12Q15) WILD-TYPE     25     81     24
D55V10, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                          5                           25
  CLUS_2                         11                           81
  CLUS_3                          1                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 32(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q14.2) MUTATED       82     45     32     56
  DEL PEAK 32(13Q14.2) WILD-TYPE     76     51    105     61
D56V1, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           82                             76
  CLUS_2                           45                             51
  CLUS_3                           32                            105
  CLUS_4                           56                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q14.2) MUTATED       68     50     21     76
  DEL PEAK 32(13Q14.2) WILD-TYPE     80     52     79     82
D56V2, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           68                             80
  CLUS_2                           50                             52
  CLUS_3                           21                             79
  CLUS_4                           76                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q14.2) MUTATED       67     76     42     44
  DEL PEAK 32(13Q14.2) WILD-TYPE     76    111     48     82
D56V3, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           67                             76
  CLUS_2                           76                            111
  CLUS_3                           42                             48
  CLUS_4                           44                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q14.2) MUTATED      132     52     45
  DEL PEAK 32(13Q14.2) WILD-TYPE    161     72     84
D56V4, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                          132                            161
  CLUS_2                           52                             72
  CLUS_3                           45                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q14.2) MUTATED      126     97     18
  DEL PEAK 32(13Q14.2) WILD-TYPE    129    100    107
D56V5, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                          126                            129
  CLUS_2                           97                            100
  CLUS_3                           18                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q14.2) MUTATED       39      9     29     46
  DEL PEAK 32(13Q14.2) WILD-TYPE     31     33     52     36
D56V6, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           39                             31
  CLUS_2                            9                             33
  CLUS_3                           29                             52
  CLUS_4                           46                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(13Q14.2) MUTATED       19     24     16     13     15
  DEL PEAK 32(13Q14.2) WILD-TYPE     25     33     28     17     30
D56V7, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           19                             25
  CLUS_2                           24                             33
  CLUS_3                           16                             28
  CLUS_4                           13                             17
  CLUS_5                           15                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q14.2) MUTATED       40     30     17
  DEL PEAK 32(13Q14.2) WILD-TYPE     50     40     43
D56V8, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           40                             50
  CLUS_2                           30                             40
  CLUS_3                           17                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q14.2) MUTATED       23     27      9
  DEL PEAK 32(13Q14.2) WILD-TYPE     22     41     25
D56V9, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           23                             22
  CLUS_2                           27                             41
  CLUS_3                            9                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q14.2) MUTATED       14     40      5
  DEL PEAK 32(13Q14.2) WILD-TYPE     16     52     20
D56V10, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           14                             16
  CLUS_2                           40                             52
  CLUS_3                            5                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 33(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q22.1) MUTATED       82     40     30     53
  DEL PEAK 33(13Q22.1) WILD-TYPE     76     56    107     64
D57V1, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           82                             76
  CLUS_2                           40                             56
  CLUS_3                           30                            107
  CLUS_4                           53                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q22.1) MUTATED       68     45     21     71
  DEL PEAK 33(13Q22.1) WILD-TYPE     80     57     79     87
D57V2, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           68                             80
  CLUS_2                           45                             57
  CLUS_3                           21                             79
  CLUS_4                           71                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q22.1) MUTATED       62     76     36     42
  DEL PEAK 33(13Q22.1) WILD-TYPE     81    111     54     84
D57V3, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           62                             81
  CLUS_2                           76                            111
  CLUS_3                           36                             54
  CLUS_4                           42                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q22.1) MUTATED      122     50     44
  DEL PEAK 33(13Q22.1) WILD-TYPE    171     74     85
D57V4, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                          122                            171
  CLUS_2                           50                             74
  CLUS_3                           44                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q22.1) MUTATED      119     94     17
  DEL PEAK 33(13Q22.1) WILD-TYPE    136    103    108
D57V5, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                          119                            136
  CLUS_2                           94                            103
  CLUS_3                           17                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q22.1) MUTATED       39      6     32     42
  DEL PEAK 33(13Q22.1) WILD-TYPE     31     36     49     40
D57V6, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           39                             31
  CLUS_2                            6                             36
  CLUS_3                           32                             49
  CLUS_4                           42                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q22.1) MUTATED       18     20     14     12     14
  DEL PEAK 33(13Q22.1) WILD-TYPE     26     37     30     18     31
D57V7, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           18                             26
  CLUS_2                           20                             37
  CLUS_3                           14                             30
  CLUS_4                           12                             18
  CLUS_5                           14                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q22.1) MUTATED       34     28     16
  DEL PEAK 33(13Q22.1) WILD-TYPE     56     42     44
D57V8, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           34                             56
  CLUS_2                           28                             42
  CLUS_3                           16                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q22.1) MUTATED       19     25     10
  DEL PEAK 33(13Q22.1) WILD-TYPE     26     43     24
D57V9, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           19                             26
  CLUS_2                           25                             43
  CLUS_3                           10                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q22.1) MUTATED       10     38      6
  DEL PEAK 33(13Q22.1) WILD-TYPE     20     54     19
D57V10, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                           38                             54
  CLUS_3                            6                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 34(14Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q13.1) MUTATED       56     39     21     45
  DEL PEAK 34(14Q13.1) WILD-TYPE    102     57    116     72
D58V1, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           56                            102
  CLUS_2                           39                             57
  CLUS_3                           21                            116
  CLUS_4                           45                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q13.1) MUTATED       49     42     15     55
  DEL PEAK 34(14Q13.1) WILD-TYPE     99     60     85    103
D58V2, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           49                             99
  CLUS_2                           42                             60
  CLUS_3                           15                             85
  CLUS_4                           55                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q13.1) MUTATED       43     65     26     38
  DEL PEAK 34(14Q13.1) WILD-TYPE    100    122     64     88
D58V3, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           43                            100
  CLUS_2                           65                            122
  CLUS_3                           26                             64
  CLUS_4                           38                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q13.1) MUTATED       96     35     41
  DEL PEAK 34(14Q13.1) WILD-TYPE    197     89     88
D58V4, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           96                            197
  CLUS_2                           35                             89
  CLUS_3                           41                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q13.1) MUTATED       93     72     13
  DEL PEAK 34(14Q13.1) WILD-TYPE    162    125    112
D58V5, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           93                            162
  CLUS_2                           72                            125
  CLUS_3                           13                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q13.1) MUTATED       26      6     24     30
  DEL PEAK 34(14Q13.1) WILD-TYPE     44     36     57     52
D58V6, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           26                             44
  CLUS_2                            6                             36
  CLUS_3                           24                             57
  CLUS_4                           30                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(14Q13.1) MUTATED       16     15     12     13     17
  DEL PEAK 34(14Q13.1) WILD-TYPE     28     42     32     17     28
D58V7, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           16                             28
  CLUS_2                           15                             42
  CLUS_3                           12                             32
  CLUS_4                           13                             17
  CLUS_5                           17                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q13.1) MUTATED       32     25     16
  DEL PEAK 34(14Q13.1) WILD-TYPE     58     45     44
D58V8, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           32                             58
  CLUS_2                           25                             45
  CLUS_3                           16                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q13.1) MUTATED       21     27     11
  DEL PEAK 34(14Q13.1) WILD-TYPE     24     41     23
D58V9, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           21                             24
  CLUS_2                           27                             41
  CLUS_3                           11                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q13.1) MUTATED       11     38     10
  DEL PEAK 34(14Q13.1) WILD-TYPE     19     54     15
D58V10, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           11                             19
  CLUS_2                           38                             54
  CLUS_3                           10                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 35(14Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q24.2) MUTATED       53     43     18     47
  DEL PEAK 35(14Q24.2) WILD-TYPE    105     53    119     70
D59V1, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           53                            105
  CLUS_2                           43                             53
  CLUS_3                           18                            119
  CLUS_4                           47                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q24.2) MUTATED       48     46     14     53
  DEL PEAK 35(14Q24.2) WILD-TYPE    100     56     86    105
D59V2, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           48                            100
  CLUS_2                           46                             56
  CLUS_3                           14                             86
  CLUS_4                           53                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q24.2) MUTATED       36     70     24     37
  DEL PEAK 35(14Q24.2) WILD-TYPE    107    117     66     89
D59V3, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           36                            107
  CLUS_2                           70                            117
  CLUS_3                           24                             66
  CLUS_4                           37                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q24.2) MUTATED      100     32     35
  DEL PEAK 35(14Q24.2) WILD-TYPE    193     92     94
D59V4, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                          100                            193
  CLUS_2                           32                             92
  CLUS_3                           35                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q24.2) MUTATED       99     70      4
  DEL PEAK 35(14Q24.2) WILD-TYPE    156    127    121
D59V5, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           99                            156
  CLUS_2                           70                            127
  CLUS_3                            4                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q24.2) MUTATED       23      6     24     35
  DEL PEAK 35(14Q24.2) WILD-TYPE     47     36     57     47
D59V6, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           23                             47
  CLUS_2                            6                             36
  CLUS_3                           24                             57
  CLUS_4                           35                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(14Q24.2) MUTATED       13     13      9     11     17
  DEL PEAK 35(14Q24.2) WILD-TYPE     31     44     35     19     28
D59V7, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           13                             44
  CLUS_3                            9                             35
  CLUS_4                           11                             19
  CLUS_5                           17                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q24.2) MUTATED       29     24     10
  DEL PEAK 35(14Q24.2) WILD-TYPE     61     46     50
D59V8, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           29                             61
  CLUS_2                           24                             46
  CLUS_3                           10                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q24.2) MUTATED       22     23      9
  DEL PEAK 35(14Q24.2) WILD-TYPE     23     45     25
D59V9, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           22                             23
  CLUS_2                           23                             45
  CLUS_3                            9                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q24.2) MUTATED       12     33      9
  DEL PEAK 35(14Q24.2) WILD-TYPE     18     59     16
D59V10, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           12                             18
  CLUS_2                           33                             59
  CLUS_3                            9                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 36(15Q14) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       37     36     20     45
  DEL PEAK 36(15Q14) WILD-TYPE    121     60    117     72
D60V1, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         37                          121
  CLUS_2                         36                           60
  CLUS_3                         20                          117
  CLUS_4                         45                           72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       34     47     12     45
  DEL PEAK 36(15Q14) WILD-TYPE    114     55     88    113
D60V2, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         34                          114
  CLUS_2                         47                           55
  CLUS_3                         12                           88
  CLUS_4                         45                          113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       30     66     25     22
  DEL PEAK 36(15Q14) WILD-TYPE    113    121     65    104
D60V3, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         30                          113
  CLUS_2                         66                          121
  CLUS_3                         25                           65
  CLUS_4                         22                          104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       95     15     33
  DEL PEAK 36(15Q14) WILD-TYPE    198    109     96
D60V4, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         95                          198
  CLUS_2                         15                          109
  CLUS_3                         33                           96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       74     71      9
  DEL PEAK 36(15Q14) WILD-TYPE    181    126    116
D60V5, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         74                          181
  CLUS_2                         71                          126
  CLUS_3                          9                          116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       17      8     19     36
  DEL PEAK 36(15Q14) WILD-TYPE     53     34     62     46
D60V6, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         17                           53
  CLUS_2                          8                           34
  CLUS_3                         19                           62
  CLUS_4                         36                           46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(15Q14) MUTATED       10     13     14     14      7
  DEL PEAK 36(15Q14) WILD-TYPE     34     44     30     16     38
D60V7, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         10                           34
  CLUS_2                         13                           44
  CLUS_3                         14                           30
  CLUS_4                         14                           16
  CLUS_5                          7                           38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       24     25      9
  DEL PEAK 36(15Q14) WILD-TYPE     66     45     51
D60V8, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         24                           66
  CLUS_2                         25                           45
  CLUS_3                          9                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       23     15      6
  DEL PEAK 36(15Q14) WILD-TYPE     22     53     28
D60V9, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         23                           22
  CLUS_2                         15                           53
  CLUS_3                          6                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       15     25      4
  DEL PEAK 36(15Q14) WILD-TYPE     15     67     21
D60V10, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         15                           15
  CLUS_2                         25                           67
  CLUS_3                          4                           21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 37(16P12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED       27     19     17     21
  DEL PEAK 37(16P12.2) WILD-TYPE    131     77    120     96
D61V1, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           27                            131
  CLUS_2                           19                             77
  CLUS_3                           17                            120
  CLUS_4                           21                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED       28     17     10     29
  DEL PEAK 37(16P12.2) WILD-TYPE    120     85     90    129
D61V2, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           28                            120
  CLUS_2                           17                             85
  CLUS_3                           10                             90
  CLUS_4                           29                            129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED       25     23     17     23
  DEL PEAK 37(16P12.2) WILD-TYPE    118    164     73    103
D61V3, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           25                            118
  CLUS_2                           23                            164
  CLUS_3                           17                             73
  CLUS_4                           23                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED       48     18     22
  DEL PEAK 37(16P12.2) WILD-TYPE    245    106    107
D61V4, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           48                            245
  CLUS_2                           18                            106
  CLUS_3                           22                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED       46     33     13
  DEL PEAK 37(16P12.2) WILD-TYPE    209    164    112
D61V5, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           46                            209
  CLUS_2                           33                            164
  CLUS_3                           13                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED        6      3     17     14
  DEL PEAK 37(16P12.2) WILD-TYPE     64     39     64     68
D61V6, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                            6                             64
  CLUS_2                            3                             39
  CLUS_3                           17                             64
  CLUS_4                           14                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(16P12.2) MUTATED       10     11      8      6      7
  DEL PEAK 37(16P12.2) WILD-TYPE     34     46     36     24     38
D61V7, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           10                             34
  CLUS_2                           11                             46
  CLUS_3                            8                             36
  CLUS_4                            6                             24
  CLUS_5                            7                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED       18     15      9
  DEL PEAK 37(16P12.2) WILD-TYPE     72     55     51
D61V8, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           18                             72
  CLUS_2                           15                             55
  CLUS_3                            9                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED        6     16      7
  DEL PEAK 37(16P12.2) WILD-TYPE     39     52     27
D61V9, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                            6                             39
  CLUS_2                           16                             52
  CLUS_3                            7                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED        3     20      6
  DEL PEAK 37(16P12.2) WILD-TYPE     27     72     19
D61V10, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           20                             72
  CLUS_3                            6                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 38(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       32     24     13     21
  DEL PEAK 38(16Q23.1) WILD-TYPE    126     72    124     96
D62V1, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           32                            126
  CLUS_2                           24                             72
  CLUS_3                           13                            124
  CLUS_4                           21                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       28     17     13     32
  DEL PEAK 38(16Q23.1) WILD-TYPE    120     85     87    126
D62V2, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           28                            120
  CLUS_2                           17                             85
  CLUS_3                           13                             87
  CLUS_4                           32                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       28     31     17     21
  DEL PEAK 38(16Q23.1) WILD-TYPE    115    156     73    105
D62V3, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           28                            115
  CLUS_2                           31                            156
  CLUS_3                           17                             73
  CLUS_4                           21                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       50     20     27
  DEL PEAK 38(16Q23.1) WILD-TYPE    243    104    102
D62V4, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           50                            243
  CLUS_2                           20                            104
  CLUS_3                           27                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       50     40     11
  DEL PEAK 38(16Q23.1) WILD-TYPE    205    157    114
D62V5, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           50                            205
  CLUS_2                           40                            157
  CLUS_3                           11                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       10      6     16     13
  DEL PEAK 38(16Q23.1) WILD-TYPE     60     36     65     69
D62V6, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           10                             60
  CLUS_2                            6                             36
  CLUS_3                           16                             65
  CLUS_4                           13                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16Q23.1) MUTATED       10     10      5     10      9
  DEL PEAK 38(16Q23.1) WILD-TYPE     34     47     39     20     36
D62V7, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           10                             34
  CLUS_2                           10                             47
  CLUS_3                            5                             39
  CLUS_4                           10                             20
  CLUS_5                            9                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       23     14      7
  DEL PEAK 38(16Q23.1) WILD-TYPE     67     56     53
D62V8, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           23                             67
  CLUS_2                           14                             56
  CLUS_3                            7                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED        9     17      8
  DEL PEAK 38(16Q23.1) WILD-TYPE     36     51     26
D62V9, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                            9                             36
  CLUS_2                           17                             51
  CLUS_3                            8                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED        6     21      7
  DEL PEAK 38(16Q23.1) WILD-TYPE     24     71     18
D62V10, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           21                             71
  CLUS_3                            7                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 39(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.1) MUTATED       33     26     12     17
  DEL PEAK 39(17P13.1) WILD-TYPE    125     70    125    100
D63V1, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           33                            125
  CLUS_2                           26                             70
  CLUS_3                           12                            125
  CLUS_4                           17                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.1) MUTATED       32     27      9     20
  DEL PEAK 39(17P13.1) WILD-TYPE    116     75     91    138
D63V2, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           32                            116
  CLUS_2                           27                             75
  CLUS_3                            9                             91
  CLUS_4                           20                            138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.1) MUTATED       27     34     15     17
  DEL PEAK 39(17P13.1) WILD-TYPE    116    153     75    109
D63V3, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           27                            116
  CLUS_2                           34                            153
  CLUS_3                           15                             75
  CLUS_4                           17                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.1) MUTATED       51     22     20
  DEL PEAK 39(17P13.1) WILD-TYPE    242    102    109
D63V4, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           51                            242
  CLUS_2                           22                            102
  CLUS_3                           20                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.1) MUTATED       55     41      2
  DEL PEAK 39(17P13.1) WILD-TYPE    200    156    123
D63V5, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           55                            200
  CLUS_2                           41                            156
  CLUS_3                            2                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.1) MUTATED       16      3      9     18
  DEL PEAK 39(17P13.1) WILD-TYPE     54     39     72     64
D63V6, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           16                             54
  CLUS_2                            3                             39
  CLUS_3                            9                             72
  CLUS_4                           18                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(17P13.1) MUTATED        9     10      7      9      5
  DEL PEAK 39(17P13.1) WILD-TYPE     35     47     37     21     40
D63V7, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           10                             47
  CLUS_3                            7                             37
  CLUS_4                            9                             21
  CLUS_5                            5                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.1) MUTATED       17     17      6
  DEL PEAK 39(17P13.1) WILD-TYPE     73     53     54
D63V8, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           17                             73
  CLUS_2                           17                             53
  CLUS_3                            6                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.1) MUTATED        9     15      5
  DEL PEAK 39(17P13.1) WILD-TYPE     36     53     29
D63V9, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                            9                             36
  CLUS_2                           15                             53
  CLUS_3                            5                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.1) MUTATED        6     20      3
  DEL PEAK 39(17P13.1) WILD-TYPE     24     72     22
D63V10, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           20                             72
  CLUS_3                            3                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 40(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED       36      9     11      5
  DEL PEAK 40(17Q11.2) WILD-TYPE    122     87    126    112
D64V1, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           36                            122
  CLUS_2                            9                             87
  CLUS_3                           11                            126
  CLUS_4                            5                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED       35      7      9     10
  DEL PEAK 40(17Q11.2) WILD-TYPE    113     95     91    148
D64V2, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           35                            113
  CLUS_2                            7                             95
  CLUS_3                            9                             91
  CLUS_4                           10                            148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED       27     18      4     19
  DEL PEAK 40(17Q11.2) WILD-TYPE    116    169     86    107
D64V3, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           27                            116
  CLUS_2                           18                            169
  CLUS_3                            4                             86
  CLUS_4                           19                            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       26     24     18
  DEL PEAK 40(17Q11.2) WILD-TYPE    267    100    111
D64V4, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           26                            267
  CLUS_2                           24                            100
  CLUS_3                           18                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       41     27      4
  DEL PEAK 40(17Q11.2) WILD-TYPE    214    170    121
D64V5, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           41                            214
  CLUS_2                           27                            170
  CLUS_3                            4                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED       17      3      3      3
  DEL PEAK 40(17Q11.2) WILD-TYPE     53     39     78     79
D64V6, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           17                             53
  CLUS_2                            3                             39
  CLUS_3                            3                             78
  CLUS_4                            3                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17Q11.2) MUTATED       12      9      0      4      3
  DEL PEAK 40(17Q11.2) WILD-TYPE     32     48     44     26     42
D64V7, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           12                             32
  CLUS_2                            9                             48
  CLUS_3                            0                             44
  CLUS_4                            4                             26
  CLUS_5                            3                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       19      5      4
  DEL PEAK 40(17Q11.2) WILD-TYPE     71     65     56
D64V8, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           19                             71
  CLUS_2                            5                             65
  CLUS_3                            4                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED        4     11      4
  DEL PEAK 40(17Q11.2) WILD-TYPE     41     57     30
D64V9, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            4                             41
  CLUS_2                           11                             57
  CLUS_3                            4                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED        2     14      3
  DEL PEAK 40(17Q11.2) WILD-TYPE     28     78     22
D64V10, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                           14                             78
  CLUS_3                            3                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 41(18Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q22.3) MUTATED       22     18     10     17
  DEL PEAK 41(18Q22.3) WILD-TYPE    136     78    127    100
D65V1, multiclass
        clus
vv       DEL PEAK 41(18Q22.3) MUTATED DEL PEAK 41(18Q22.3) WILD-TYPE
  CLUS_1                           22                            136
  CLUS_2                           18                             78
  CLUS_3                           10                            127
  CLUS_4                           17                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q22.3) MUTATED       24     15      6     22
  DEL PEAK 41(18Q22.3) WILD-TYPE    124     87     94    136
D65V2, multiclass
        clus
vv       DEL PEAK 41(18Q22.3) MUTATED DEL PEAK 41(18Q22.3) WILD-TYPE
  CLUS_1                           24                            124
  CLUS_2                           15                             87
  CLUS_3                            6                             94
  CLUS_4                           22                            136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q22.3) MUTATED       25     28     10     14
  DEL PEAK 41(18Q22.3) WILD-TYPE    118    159     80    112
D65V3, multiclass
        clus
vv       DEL PEAK 41(18Q22.3) MUTATED DEL PEAK 41(18Q22.3) WILD-TYPE
  CLUS_1                           25                            118
  CLUS_2                           28                            159
  CLUS_3                           10                             80
  CLUS_4                           14                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q22.3) MUTATED       38     16     23
  DEL PEAK 41(18Q22.3) WILD-TYPE    255    108    106
D65V4, multiclass
        clus
vv       DEL PEAK 41(18Q22.3) MUTATED DEL PEAK 41(18Q22.3) WILD-TYPE
  CLUS_1                           38                            255
  CLUS_2                           16                            108
  CLUS_3                           23                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q22.3) MUTATED       41     34      7
  DEL PEAK 41(18Q22.3) WILD-TYPE    214    163    118
D65V5, multiclass
        clus
vv       DEL PEAK 41(18Q22.3) MUTATED DEL PEAK 41(18Q22.3) WILD-TYPE
  CLUS_1                           41                            214
  CLUS_2                           34                            163
  CLUS_3                            7                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q22.3) MUTATED       10      5      6     14
  DEL PEAK 41(18Q22.3) WILD-TYPE     60     37     75     68
D65V6, multiclass
        clus
vv       DEL PEAK 41(18Q22.3) MUTATED DEL PEAK 41(18Q22.3) WILD-TYPE
  CLUS_1                           10                             60
  CLUS_2                            5                             37
  CLUS_3                            6                             75
  CLUS_4                           14                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(18Q22.3) MUTATED        9      5      6      6     10
  DEL PEAK 41(18Q22.3) WILD-TYPE     35     52     38     24     35
D65V7, multiclass
        clus
vv       DEL PEAK 41(18Q22.3) MUTATED DEL PEAK 41(18Q22.3) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                            5                             52
  CLUS_3                            6                             38
  CLUS_4                            6                             24
  CLUS_5                           10                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q22.3) MUTATED       15     17      4
  DEL PEAK 41(18Q22.3) WILD-TYPE     75     53     56
D65V8, multiclass
        clus
vv       DEL PEAK 41(18Q22.3) MUTATED DEL PEAK 41(18Q22.3) WILD-TYPE
  CLUS_1                           15                             75
  CLUS_2                           17                             53
  CLUS_3                            4                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q22.3) MUTATED        9      7      5
  DEL PEAK 41(18Q22.3) WILD-TYPE     36     61     29
D65V9, multiclass
        clus
vv       DEL PEAK 41(18Q22.3) MUTATED DEL PEAK 41(18Q22.3) WILD-TYPE
  CLUS_1                            9                             36
  CLUS_2                            7                             61
  CLUS_3                            5                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q22.3) MUTATED        6     10      5
  DEL PEAK 41(18Q22.3) WILD-TYPE     24     82     20
D65V10, multiclass
        clus
vv       DEL PEAK 41(18Q22.3) MUTATED DEL PEAK 41(18Q22.3) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           10                             82
  CLUS_3                            5                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 42(19Q13.41) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19Q13.41) MUTATED       23     23     15     30
  DEL PEAK 42(19Q13.41) WILD-TYPE    135     73    122     87
D66V1, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            23                             135
  CLUS_2                            23                              73
  CLUS_3                            15                             122
  CLUS_4                            30                              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19Q13.41) MUTATED       24     34      8     25
  DEL PEAK 42(19Q13.41) WILD-TYPE    124     68     92    133
D66V2, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            24                             124
  CLUS_2                            34                              68
  CLUS_3                             8                              92
  CLUS_4                            25                             133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19Q13.41) MUTATED       18     44     13     22
  DEL PEAK 42(19Q13.41) WILD-TYPE    125    143     77    104
D66V3, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            18                             125
  CLUS_2                            44                             143
  CLUS_3                            13                              77
  CLUS_4                            22                             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.41) MUTATED       63     19     15
  DEL PEAK 42(19Q13.41) WILD-TYPE    230    105    114
D66V4, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            63                             230
  CLUS_2                            19                             105
  CLUS_3                            15                             114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.41) MUTATED       55     37      8
  DEL PEAK 42(19Q13.41) WILD-TYPE    200    160    117
D66V5, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            55                             200
  CLUS_2                            37                             160
  CLUS_3                             8                             117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19Q13.41) MUTATED        9      2      8     29
  DEL PEAK 42(19Q13.41) WILD-TYPE     61     40     73     53
D66V6, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                             9                              61
  CLUS_2                             2                              40
  CLUS_3                             8                              73
  CLUS_4                            29                              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(19Q13.41) MUTATED        5      7      8      9     10
  DEL PEAK 42(19Q13.41) WILD-TYPE     39     50     36     21     35
D66V7, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                             5                              39
  CLUS_2                             7                              50
  CLUS_3                             8                              36
  CLUS_4                             9                              21
  CLUS_5                            10                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.41) MUTATED       11     17     11
  DEL PEAK 42(19Q13.41) WILD-TYPE     79     53     49
D66V8, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            11                              79
  CLUS_2                            17                              53
  CLUS_3                            11                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.41) MUTATED        9      6     10
  DEL PEAK 42(19Q13.41) WILD-TYPE     36     62     24
D66V9, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                             9                              36
  CLUS_2                             6                              62
  CLUS_3                            10                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.41) MUTATED        5     12      8
  DEL PEAK 42(19Q13.41) WILD-TYPE     25     80     17
D66V10, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                             5                              25
  CLUS_2                            12                              80
  CLUS_3                             8                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 43(21Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(21Q21.1) MUTATED        6     15     12     14
  DEL PEAK 43(21Q21.1) WILD-TYPE    152     81    125    103
D67V1, multiclass
        clus
vv       DEL PEAK 43(21Q21.1) MUTATED DEL PEAK 43(21Q21.1) WILD-TYPE
  CLUS_1                            6                            152
  CLUS_2                           15                             81
  CLUS_3                           12                            125
  CLUS_4                           14                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(21Q21.1) MUTATED        5     19      8     15
  DEL PEAK 43(21Q21.1) WILD-TYPE    143     83     92    143
D67V2, multiclass
        clus
vv       DEL PEAK 43(21Q21.1) MUTATED DEL PEAK 43(21Q21.1) WILD-TYPE
  CLUS_1                            5                            143
  CLUS_2                           19                             83
  CLUS_3                            8                             92
  CLUS_4                           15                            143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(21Q21.1) MUTATED        8     24     13      8
  DEL PEAK 43(21Q21.1) WILD-TYPE    135    163     77    118
D67V3, multiclass
        clus
vv       DEL PEAK 43(21Q21.1) MUTATED DEL PEAK 43(21Q21.1) WILD-TYPE
  CLUS_1                            8                            135
  CLUS_2                           24                            163
  CLUS_3                           13                             77
  CLUS_4                            8                            118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q21.1) MUTATED       33      7     13
  DEL PEAK 43(21Q21.1) WILD-TYPE    260    117    116
D67V4, multiclass
        clus
vv       DEL PEAK 43(21Q21.1) MUTATED DEL PEAK 43(21Q21.1) WILD-TYPE
  CLUS_1                           33                            260
  CLUS_2                            7                            117
  CLUS_3                           13                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q21.1) MUTATED       23     23     10
  DEL PEAK 43(21Q21.1) WILD-TYPE    232    174    115
D67V5, multiclass
        clus
vv       DEL PEAK 43(21Q21.1) MUTATED DEL PEAK 43(21Q21.1) WILD-TYPE
  CLUS_1                           23                            232
  CLUS_2                           23                            174
  CLUS_3                           10                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(21Q21.1) MUTATED        1      4      8     13
  DEL PEAK 43(21Q21.1) WILD-TYPE     69     38     73     69
D67V6, multiclass
        clus
vv       DEL PEAK 43(21Q21.1) MUTATED DEL PEAK 43(21Q21.1) WILD-TYPE
  CLUS_1                            1                             69
  CLUS_2                            4                             38
  CLUS_3                            8                             73
  CLUS_4                           13                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(21Q21.1) MUTATED        2      3      3      4      7
  DEL PEAK 43(21Q21.1) WILD-TYPE     42     54     41     26     38
D67V7, multiclass
        clus
vv       DEL PEAK 43(21Q21.1) MUTATED DEL PEAK 43(21Q21.1) WILD-TYPE
  CLUS_1                            2                             42
  CLUS_2                            3                             54
  CLUS_3                            3                             41
  CLUS_4                            4                             26
  CLUS_5                            7                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q21.1) MUTATED        2      9      8
  DEL PEAK 43(21Q21.1) WILD-TYPE     88     61     52
D67V8, multiclass
        clus
vv       DEL PEAK 43(21Q21.1) MUTATED DEL PEAK 43(21Q21.1) WILD-TYPE
  CLUS_1                            2                             88
  CLUS_2                            9                             61
  CLUS_3                            8                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q21.1) MUTATED        3      5      3
  DEL PEAK 43(21Q21.1) WILD-TYPE     42     63     31
D67V9, multiclass
        clus
vv       DEL PEAK 43(21Q21.1) MUTATED DEL PEAK 43(21Q21.1) WILD-TYPE
  CLUS_1                            3                             42
  CLUS_2                            5                             63
  CLUS_3                            3                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q21.1) MUTATED        2      7      2
  DEL PEAK 43(21Q21.1) WILD-TYPE     28     85     23
D67V10, multiclass
        clus
vv       DEL PEAK 43(21Q21.1) MUTATED DEL PEAK 43(21Q21.1) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                            7                             85
  CLUS_3                            2                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 44(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       62     38     52     40
  DEL PEAK 44(22Q13.32) WILD-TYPE     96     58     85     77
D68V1, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            62                              96
  CLUS_2                            38                              58
  CLUS_3                            52                              85
  CLUS_4                            40                              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       55     37     39     61
  DEL PEAK 44(22Q13.32) WILD-TYPE     93     65     61     97
D68V2, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            55                              93
  CLUS_2                            37                              65
  CLUS_3                            39                              61
  CLUS_4                            61                              97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       55     82     26     43
  DEL PEAK 44(22Q13.32) WILD-TYPE     88    105     64     83
D68V3, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            55                              88
  CLUS_2                            82                             105
  CLUS_3                            26                              64
  CLUS_4                            43                              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED      107     44     55
  DEL PEAK 44(22Q13.32) WILD-TYPE    186     80     74
D68V4, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                           107                             186
  CLUS_2                            44                              80
  CLUS_3                            55                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       89     96     27
  DEL PEAK 44(22Q13.32) WILD-TYPE    166    101     98
D68V5, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            89                             166
  CLUS_2                            96                             101
  CLUS_3                            27                              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       30     12     28     31
  DEL PEAK 44(22Q13.32) WILD-TYPE     40     30     53     51
D68V6, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            30                              40
  CLUS_2                            12                              30
  CLUS_3                            28                              53
  CLUS_4                            31                              51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(22Q13.32) MUTATED       19     16     14     14     19
  DEL PEAK 44(22Q13.32) WILD-TYPE     25     41     30     16     26
D68V7, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            19                              25
  CLUS_2                            16                              41
  CLUS_3                            14                              30
  CLUS_4                            14                              16
  CLUS_5                            19                              26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       35     29     18
  DEL PEAK 44(22Q13.32) WILD-TYPE     55     41     42
D68V8, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            35                              55
  CLUS_2                            29                              41
  CLUS_3                            18                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       16     26     22
  DEL PEAK 44(22Q13.32) WILD-TYPE     29     42     12
D68V9, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            16                              29
  CLUS_2                            26                              42
  CLUS_3                            22                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED        9     40     15
  DEL PEAK 44(22Q13.32) WILD-TYPE     21     52     10
D68V10, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                             9                              21
  CLUS_2                            40                              52
  CLUS_3                            15                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
