gene1	gene2	pval	qval
MET	SETD2	0.28	1
AR	MET	0.357	1
MET	PCF11	0.42	1
KDM6A	MET	0.455	1
MET	NF2	0.455	1
MET	SMARCA4	0.455	1
MET	ZNF814	0.493	1
PCF11	SETD2	0.52	1
ALMS1	MET	0.534	1
CUL3	SETD2	0.552	1
KDM6A	SETD2	0.552	1
SETD2	SMARCA4	0.552	1
MET	PTEN	0.578	1
MET	TP53	0.578	1
AR	PBRM1	0.589	1
AR	KDM6A	0.619	1
AR	NF2	0.619	1
AR	SMARCA4	0.619	1
BCLAF1	MET	0.626	1
MET	NEFH	0.626	1
MET	SMARCB1	0.626	1
PTEN	SETD2	0.661	1
CUL3	PBRM1	0.667	1
CUL3	PCF11	0.667	1
KDM6A	PBRM1	0.667	1
KDM6A	PCF11	0.667	1
NF2	PBRM1	0.667	1
NF2	PCF11	0.667	1
PBRM1	SMARCA4	0.667	1
PCF11	SMARCA4	0.667	1
FGFR3	MET	0.677	1
KRAS	MET	0.677	1
KRT2	MET	0.677	1
KRTAP4-5	MET	0.677	1
MET	PIK3CA	0.677	1
CUL3	KDM6A	0.693	1
CUL3	NF2	0.693	1
CUL3	SMARCA4	0.693	1
KDM6A	NF2	0.693	1
KDM6A	SMARCA4	0.693	1
NF2	SMARCA4	0.693	1
PCF11	ZNF814	0.695	1
BCLAF1	SETD2	0.702	1
NEFH	SETD2	0.702	1
AR	ATP1B1	0.716	1
AR	TP53	0.716	1
CUL3	ZNF814	0.719	1
KDM6A	ZNF814	0.719	1
NF2	ZNF814	0.719	1
ALMS1	PCF11	0.724	1
BRAF	MET	0.733	1
GXYLT1	MET	0.733	1
FGFR3	SETD2	0.745	1
KRAS	SETD2	0.745	1
KRT2	SETD2	0.745	1
KRTAP4-5	SETD2	0.745	1
ALMS1	CUL3	0.746	1
ALMS1	SMARCA4	0.746	1
AR	BCLAF1	0.751	1
AR	NEFH	0.751	1
AR	SMARCB1	0.751	1
ATP1B1	PBRM1	0.755	1
PBRM1	PTEN	0.755	1
PCF11	TP53	0.755	1
ALMS1	ZNF814	0.769	1
ATP1B1	CUL3	0.775	1
ATP1B1	KDM6A	0.775	1
ATP1B1	NF2	0.775	1
ATP1B1	SMARCA4	0.775	1
CUL3	PTEN	0.775	1
KDM6A	PTEN	0.775	1
KDM6A	TP53	0.775	1
NF2	PTEN	0.775	1
NF2	TP53	0.775	1
PTEN	SMARCA4	0.775	1
SMARCA4	TP53	0.775	1
BCLAF1	PBRM1	0.786	1
NEFH	PBRM1	0.786	1
NEFH	PCF11	0.786	1
AR	FGFR3	0.788	1
AR	KRT2	0.788	1
AR	KRTAP4-5	0.788	1
BRAF	SETD2	0.791	1
GXYLT1	SETD2	0.791	1
ERBB2	MET	0.792	1
ATP1B1	ZNF814	0.795	1
PTEN	ZNF814	0.795	1
TP53	ZNF814	0.795	1
BCLAF1	CUL3	0.804	1
BCLAF1	KDM6A	0.804	1
BCLAF1	NF2	0.804	1
BCLAF1	SMARCA4	0.804	1
CUL3	NEFH	0.804	1
CUL3	SMARCB1	0.804	1
KDM6A	NEFH	0.804	1
KDM6A	SMARCB1	0.804	1
SMARCA4	SMARCB1	0.804	1
ALMS1	ATP1B1	0.816	1
ALMS1	PTEN	0.816	1
ALMS1	TP53	0.816	1
FGFR3	PBRM1	0.818	1
FGFR3	PCF11	0.818	1
KIAA0922	PBRM1	0.818	1
KIAA0922	PCF11	0.818	1
KRAS	PBRM1	0.818	1
KRAS	PCF11	0.818	1
KRT2	PBRM1	0.818	1
KRT2	PCF11	0.818	1
KRTAP4-5	PBRM1	0.818	1
KRTAP4-5	PCF11	0.818	1
BCLAF1	ZNF814	0.822	1
NEFH	ZNF814	0.822	1
SMARCB1	ZNF814	0.822	1
AR	BRAF	0.827	1
AR	GXYLT1	0.827	1
CUL3	FGFR3	0.834	1
CUL3	KIAA0922	0.834	1
CUL3	KRAS	0.834	1
CUL3	KRT2	0.834	1
FGFR3	NF2	0.834	1
FGFR3	SMARCA4	0.834	1
KDM6A	KIAA0922	0.834	1
KDM6A	KRAS	0.834	1
KDM6A	KRT2	0.834	1
KDM6A	KRTAP4-5	0.834	1
KDM6A	PIK3CA	0.834	1
KIAA0922	NF2	0.834	1
KIAA0922	SMARCA4	0.834	1
KRAS	NF2	0.834	1
KRAS	SMARCA4	0.834	1
KRT2	NF2	0.834	1
KRT2	SMARCA4	0.834	1
KRTAP4-5	NF2	0.834	1
KRTAP4-5	SMARCA4	0.834	1
NF2	PIK3CA	0.834	1
PIK3CA	SMARCA4	0.834	1
AR	SETD2	0.837	1
ATP1B1	PTEN	0.837	1
ATP1B1	TP53	0.837	1
PTEN	TP53	0.837	1
ERBB2	SETD2	0.839	1
PAM	SETD2	0.839	1
ALMS1	BCLAF1	0.84	1
ALMS1	NEFH	0.84	1
ALMS1	SMARCB1	0.84	1
FGFR3	ZNF814	0.849	1
KIAA0922	ZNF814	0.849	1
KRAS	ZNF814	0.849	1
KRT2	ZNF814	0.849	1
KRTAP4-5	ZNF814	0.849	1
PIK3CA	ZNF814	0.849	1
BRAF	PBRM1	0.852	1
GXYLT1	PBRM1	0.852	1
GXYLT1	PCF11	0.852	1
CCBL2	MET	0.856	1
ATP1B1	BCLAF1	0.859	1
ATP1B1	NEFH	0.859	1
ATP1B1	SMARCB1	0.859	1
BCLAF1	PTEN	0.859	1
NEFH	PTEN	0.859	1
NEFH	TP53	0.859	1
PTEN	SMARCB1	0.859	1
SMARCB1	TP53	0.859	1
ALMS1	KIAA0922	0.865	1
ALMS1	KRAS	0.865	1
ALMS1	KRT2	0.865	1
ALMS1	KRTAP4-5	0.865	1
BRAF	CUL3	0.865	1
BRAF	KDM6A	0.865	1
BRAF	NF2	0.865	1
BRAF	SMARCA4	0.865	1
CUL3	GXYLT1	0.865	1
GXYLT1	KDM6A	0.865	1
GXYLT1	NF2	0.865	1
GXYLT1	SMARCA4	0.865	1
AR	ERBB2	0.868	1
AR	PAM	0.868	1
BCLAF1	NEFH	0.878	1
BCLAF1	SMARCB1	0.878	1
BRAF	ZNF814	0.878	1
GXYLT1	ZNF814	0.878	1
NEFH	SMARCB1	0.878	1
ATP1B1	FGFR3	0.881	1
ATP1B1	KIAA0922	0.881	1
ATP1B1	KRAS	0.881	1
ATP1B1	KRT2	0.881	1
ATP1B1	KRTAP4-5	0.881	1
ATP1B1	PIK3CA	0.881	1
FGFR3	PTEN	0.881	1
KIAA0922	PTEN	0.881	1
KIAA0922	TP53	0.881	1
KRAS	PTEN	0.881	1
KRAS	TP53	0.881	1
KRT2	TP53	0.881	1
KRTAP4-5	PTEN	0.881	1
KRTAP4-5	TP53	0.881	1
PIK3CA	PTEN	0.881	1
ERBB2	PBRM1	0.887	1
ERBB2	PCF11	0.887	1
PAM	PBRM1	0.887	1
PAM	PCF11	0.887	1
CCBL2	SETD2	0.89	1
ALMS1	BRAF	0.891	1
ALMS1	GXYLT1	0.891	1
BCLAF1	FGFR3	0.897	1
BCLAF1	KIAA0922	0.897	1
BCLAF1	KRAS	0.897	1
BCLAF1	KRT2	0.897	1
BCLAF1	KRTAP4-5	0.897	1
CUL3	ERBB2	0.897	1
ERBB2	KDM6A	0.897	1
ERBB2	NF2	0.897	1
ERBB2	SMARCA4	0.897	1
FGFR3	NEFH	0.897	1
FGFR3	SMARCB1	0.897	1
KDM6A	PAM	0.897	1
KIAA0922	NEFH	0.897	1
KIAA0922	SMARCB1	0.897	1
KRAS	NEFH	0.897	1
KRAS	SMARCB1	0.897	1
KRT2	NEFH	0.897	1
KRT2	SMARCB1	0.897	1
KRTAP4-5	NEFH	0.897	1
KRTAP4-5	SMARCB1	0.897	1
NEFH	PIK3CA	0.897	1
NF2	PAM	0.897	1
PAM	SMARCA4	0.897	1
PIK3CA	SMARCB1	0.897	1
ATP1B1	GXYLT1	0.904	1
BRAF	PTEN	0.904	1
BRAF	TP53	0.904	1
GXYLT1	PTEN	0.904	1
GXYLT1	TP53	0.904	1
PAM	ZNF814	0.907	1
AR	CCBL2	0.91	1
ATP1B1	MET	0.912	1
FGFR3	KIAA0922	0.914	1
FGFR3	KRAS	0.914	1
FGFR3	KRT2	0.914	1
FGFR3	KRTAP4-5	0.914	1
FGFR3	PIK3CA	0.914	1
KIAA0922	KRAS	0.914	1
KIAA0922	KRTAP4-5	0.914	1
KIAA0922	PIK3CA	0.914	1
KRAS	KRT2	0.914	1
KRAS	KRTAP4-5	0.914	1
KRAS	PIK3CA	0.914	1
KRT2	KRTAP4-5	0.914	1
KRT2	PIK3CA	0.914	1
ALMS1	ERBB2	0.917	1
ALMS1	PAM	0.917	1
BCLAF1	BRAF	0.917	1
BCLAF1	GXYLT1	0.917	1
BRAF	NEFH	0.917	1
BRAF	SMARCB1	0.917	1
GXYLT1	NEFH	0.917	1
GXYLT1	SMARCB1	0.917	1
CCBL2	PBRM1	0.923	1
CCBL2	PCF11	0.923	1
ATP1B1	ERBB2	0.927	1
ATP1B1	PAM	0.927	1
ERBB2	PTEN	0.927	1
ERBB2	TP53	0.927	1
PAM	PTEN	0.927	1
PAM	TP53	0.927	1
AR	CUL3	0.928	1
CCBL2	CUL3	0.93	1
CCBL2	KDM6A	0.93	1
CCBL2	NF2	0.93	1
CCBL2	SMARCA4	0.93	1
ALMS1	SETD2	0.931	1
BRAF	FGFR3	0.931	1
BRAF	KIAA0922	0.931	1
BRAF	KRAS	0.931	1
BRAF	KRT2	0.931	1
BRAF	KRTAP4-5	0.931	1
BRAF	PIK3CA	0.931	1
FGFR3	GXYLT1	0.931	1
GXYLT1	KIAA0922	0.931	1
GXYLT1	KRAS	0.931	1
GXYLT1	KRTAP4-5	0.931	1
GXYLT1	PIK3CA	0.931	1
BCLAF1	ERBB2	0.937	1
BCLAF1	PAM	0.937	1
CCBL2	ZNF814	0.937	1
ERBB2	NEFH	0.937	1
ERBB2	SMARCB1	0.937	1
NEFH	PAM	0.937	1
PAM	SMARCB1	0.937	1
PBRM1	PCF11	0.937	1
AR	ZNF814	0.941	1
ALMS1	CCBL2	0.944	1
BRAF	GXYLT1	0.944	1
ATP1B1	SETD2	0.946	1
SETD2	TP53	0.946	1
ERBB2	FGFR3	0.948	1
ERBB2	KIAA0922	0.948	1
ERBB2	KRAS	0.948	1
ERBB2	KRT2	0.948	1
ERBB2	KRTAP4-5	0.948	1
ERBB2	PIK3CA	0.948	1
FGFR3	PAM	0.948	1
KIAA0922	PAM	0.948	1
KRAS	PAM	0.948	1
KRTAP4-5	PAM	0.948	1
PAM	PIK3CA	0.948	1
ATP1B1	CCBL2	0.951	1
CCBL2	PTEN	0.951	1
CCBL2	TP53	0.951	1
ALMS1	AR	0.953	1
KIAA0922	MET	0.954	1
PBRM1	ZNF814	0.957	1
BCLAF1	CCBL2	0.958	1
BRAF	ERBB2	0.958	1
BRAF	PAM	0.958	1
CCBL2	NEFH	0.958	1
CCBL2	SMARCB1	0.958	1
ERBB2	GXYLT1	0.958	1
GXYLT1	PAM	0.958	1
MET	PBRM1	0.96	1
SETD2	SMARCB1	0.96	1
AR	PTEN	0.964	1
SMARCA4	ZNF814	0.964	1
CCBL2	FGFR3	0.965	1
CCBL2	KRT2	0.965	1
CCBL2	KRTAP4-5	0.965	1
CCBL2	PIK3CA	0.965	1
ALMS1	PBRM1	0.966	1
ERBB2	PAM	0.968	1
CUL3	MET	0.969	1
ALMS1	KDM6A	0.972	1
ALMS1	NF2	0.972	1
BRAF	CCBL2	0.972	1
CCBL2	GXYLT1	0.972	1
KIAA0922	SETD2	0.973	1
PIK3CA	SETD2	0.973	1
PBRM1	TP53	0.974	1
PCF11	PTEN	0.974	1
CUL3	TP53	0.978	1
CCBL2	ERBB2	0.979	1
CCBL2	PAM	0.979	1
BCLAF1	PCF11	0.981	1
PBRM1	SMARCB1	0.981	1
PCF11	SMARCB1	0.981	1
AR	KIAA0922	0.982	1
AR	KRAS	0.982	1
AR	PIK3CA	0.982	1
NEFH	NF2	0.984	1
NEFH	SMARCA4	0.984	1
NF2	SMARCB1	0.984	1
MET	PAM	0.985	1
NF2	SETD2	0.986	1
PBRM1	PIK3CA	0.987	1
PCF11	PIK3CA	0.987	1
CUL3	KRTAP4-5	0.989	1
CUL3	PIK3CA	0.989	1
AR	PCF11	0.99	1
SETD2	ZNF814	0.99	1
BCLAF1	TP53	0.992	1
BRAF	PCF11	0.992	1
ALMS1	FGFR3	0.993	1
ALMS1	PIK3CA	0.993	1
FGFR3	TP53	0.995	1
KRT2	PTEN	0.995	1
ATP1B1	BRAF	0.997	1
CUL3	PAM	0.997	1
ERBB2	ZNF814	0.997	1
KIAA0922	KRT2	0.998	1
KRTAP4-5	PIK3CA	0.998	1
ATP1B1	PCF11	0.999	1
GXYLT1	KRT2	0.999	1
KRT2	PAM	0.999	1
BCLAF1	PIK3CA	1	1
CCBL2	KIAA0922	1	1
CCBL2	KRAS	1	1
FGFR3	KDM6A	1	1
PBRM1	SETD2	1	1
PIK3CA	TP53	1	1
