gene1	gene2	pval	qval
22q-Del	Del_3p22.1	0.000112	1
16q-Amp	2q-Amp	0.000128	1
Del_9p21.3	Del_11q23.3	0.000135	1
17q-Amp	Amp_2q32.1	0.000137	1
Del_3p22.1	Del_22q12.2	0.000141	1
22q-Del	Del_11q22.3	0.000185	1
TP53	Del_2p12	0.000187	1
Del_4q34.3	Del_11q23.3	0.000204	1
Del_3p22.1	Del_11q23.3	0.000218	1
Del_11q22.3	Del_22q12.2	0.000238	1
16p-Amp	Amp_2q32.1	0.000242	1
Del_4q34.3	Del_14q11.2	0.000269	1
SMARCB1	Del_19p13.3	0.000297	1
22q-Del	Del_14q11.2	0.000307	1
Del_11q23.3	Del_19p13.3	0.000335	1
12q-Amp	2q-Amp	0.000369	1
Del_14q11.2	Del_19q13.42	0.000383	1
14q-Del	Del_3p22.1	0.000395	1
Del_14q11.2	Del_22q12.2	0.000416	1
SETD2	Del_19p13.3	0.000441	1
Del_4q34.3	Del_6q25.3	0.00046	1
12p-Amp	2q-Amp	0.000485	1
Del_3p22.1	Del_14q24.2	0.000497	1
22q-Del	Del_19q13.42	0.000538	1
Del_9p21.3	Del_11q22.3	0.000545	1
Del_3p22.1	Del_11q22.3	0.000577	1
Del_11q23.3	Del_16q24.2	0.000583	1
7p-Amp	Amp_2q32.1	0.000605	1
7q-Amp	Amp_2q32.1	0.000605	1
Del_19q13.42	Del_22q12.2	0.000631	1
SETD2	Del_11q23.3	0.000673	1
Del_11q22.3	Del_19p13.3	0.000724	1
Del_19p13.3	Del_19q13.42	0.000809	1
16q-Amp	Amp_2q32.1	0.000925	1
Amp_2q32.1	Amp_7q31.2	0.000927	1
Del_11q22.3	Del_16q24.2	0.00125	1
12q-Amp	Amp_2q32.1	0.00155	1
17p-Amp	2q-Amp	0.00163	1
SETD2	Del_11q22.3	0.00173	1
12p-Amp	Amp_2q32.1	0.00201	1
NF2	22q-Del	0.00205	1
Del_1p36.31	Del_2p12	0.00205	1
17p-Amp	Amp_2q32.1	0.0021	1
14q-Del	Del_6q25.3	0.00219	1
SMARCA4	7p-Amp	0.00223	1
SMARCA4	7q-Amp	0.00223	1
PBRM1	Del_19p13.3	0.00229	1
Del_6q25.3	Del_11q22.3	0.00235	1
NF2	Del_22q12.2	0.00239	1
ATP1B1	Del_14q11.2	0.00265	1
Del_6q25.3	Del_14q24.2	0.00272	1
Del_1p36.31	Del_2q37.3	0.00277	1
SMARCA4	Amp_7q31.2	0.00298	1
14q-Del	Del_19p13.3	0.00321	1
Del_5p15.33	Del_6q25.3	0.00335	1
Del_14q24.2	Del_19p13.3	0.00372	1
BCLAF1	PIK3CA	0.00373	1
Del_3p22.1	Del_19p13.3	0.00386	1
Del_3p22.1	Del_19q13.42	0.00386	1
Del_6q25.3	Del_14q11.2	0.00405	1
20q-Amp	2q-Amp	0.00417	1
20p-Amp	2q-Amp	0.00469	1
PIK3CA	TP53	0.00519	1
Del_4q34.3	Del_11q22.3	0.00521	1
Del_2p12	Del_4q34.3	0.00547	1
Del_2p12	Del_2q22.1	0.00554	1
SETD2	Del_1p36.31	0.00576	1
Del_3p22.1	Del_14q11.2	0.00603	1
Del_9p21.3	Del_16q24.2	0.00625	1
14q-Del	Del_11q23.3	0.00737	1
Del_2q37.3	Del_3p22.1	0.00782	1
Del_1p36.31	Del_19p13.3	0.00805	1
Del_6q25.3	Del_11q23.3	0.00847	1
Del_6q25.3	Del_19p13.3	0.00867	1
PIK3CA	Del_16q24.2	0.00876	1
Del_11q23.3	Del_14q24.2	0.00876	1
ATP1B1	Del_4q34.3	0.00913	1
FGFR3	KDM6A	0.0109	1
20q-Amp	Amp_2q32.1	0.011	1
SMARCA4	17p-Amp	0.0118	1
Del_11q23.3	Del_14q11.2	0.0121	1
20p-Amp	Amp_2q32.1	0.0123	1
Del_2q22.1	Del_9p21.3	0.0132	1
Del_5p15.33	Del_9p21.3	0.0132	1
Del_4q34.3	Del_19p13.3	0.0139	1
Del_4q34.3	Del_19q13.42	0.0139	1
ATP1B1	Del_19q13.42	0.014	1
SMARCA4	16q-Amp	0.0143	1
ZNF814	Del_11q22.3	0.0148	1
PBRM1	Del_11q23.3	0.0159	1
CUL3	Del_2p12	0.016	1
Del_2p12	Del_2q37.3	0.016	1
22q-Del	Del_2q37.3	0.0162	1
NF2	Del_6q25.3	0.0172	1
14q-Del	Del_11q22.3	0.0172	1
Del_2q37.3	Del_22q12.2	0.0182	1
SMARCA4	16p-Amp	0.0186	1
SMARCA4	3q-Amp	0.0186	1
SETD2	Amp_5q35.3	0.0192	1
PBRM1	Del_2p12	0.0194	1
Amp_5q35.3	Del_2p12	0.0194	1
ATP1B1	14q-Del	0.0195	1
SETD2	Del_4q34.3	0.0198	1
Del_11q22.3	Del_14q24.2	0.0203	1
SMARCA4	17q-Amp	0.0214	1
ATP1B1	Del_14q24.2	0.0216	1
ATP1B1	PCF11	0.022	1
ZNF814	Del_19p13.3	0.0233	1
Del_16q24.2	Del_19p13.3	0.0233	1
PBRM1	22q-Del	0.0234	1
GXYLT1	17p-Amp	0.0257	1
PBRM1	Del_22q12.2	0.0262	1
TP53	Amp_5q35.3	0.0265	1
PBRM1	Del_11q22.3	0.0267	1
Del_2p12	Del_3p22.1	0.0269	1
Del_2q22.1	Del_3p22.1	0.0269	1
Del_11q22.3	Del_14q11.2	0.0275	1
PBRM1	Del_1p36.31	0.0292	1
SETD2	Del_3p22.1	0.0309	1
ATP1B1	22q-Del	0.0318	1
PAM	16q-Amp	0.0325	1
ATP1B1	Del_22q12.2	0.0346	1
FGFR3	Del_11q22.3	0.0348	1
SMARCA4	20q-Amp	0.035	1
CCBL2	KIAA0922	0.0355	1
CCBL2	KRAS	0.0355	1
PBRM1	Del_4q34.3	0.0357	1
Amp_5q35.3	Del_4q34.3	0.0357	1
GXYLT1	17q-Amp	0.0362	1
Del_3p22.1	Del_6q25.3	0.0365	1
TP53	Del_3p22.1	0.0367	1
PAM	16p-Amp	0.037	1
SMARCA4	20p-Amp	0.0375	1
ATP1B1	Del_1p36.31	0.0377	1
Del_14q11.2	Del_19p13.3	0.0393	1
SETD2	Del_2p12	0.0402	1
14q-Del	Del_16q24.2	0.0411	1
NEFH	3p-Amp	0.0426	1
SMARCA4	3p-Amp	0.0431	1
GXYLT1	12q-Amp	0.0438	1
CUL3	Del_2q37.3	0.0444	1
Amp_2q32.1	Del_2q22.1	0.0451	1
Del_14q24.2	Del_16q24.2	0.0455	1
GXYLT1	12p-Amp	0.0476	1
KRT2	PAM	0.0528	1
Del_14q11.2	Del_16q24.2	0.0549	1
Del_3p22.1	Del_16q24.2	0.0596	1
NF2	Del_9p21.3	0.0608	1
Del_2q37.3	Del_9p21.3	0.0608	1
Del_2q22.1	Del_4q34.3	0.0612	1
Del_11q23.3	Del_19q13.42	0.0623	1
SMARCA4	12q-Amp	0.0627	1
22q-Del	Del_16q24.2	0.0652	1
GXYLT1	KRT2	0.0699	1
SETD2	Del_19q13.42	0.0701	1
SMARCA4	12p-Amp	0.0704	1
Del_16q24.2	Del_22q12.2	0.0708	1
NEFH	3q-Amp	0.0722	1
AR	PCF11	0.0726	1
CUL3	Del_3p22.1	0.0726	1
FGFR3	Del_9p21.3	0.0747	1
ZNF814	Del_11q23.3	0.0776	1
MET	17p-Amp	0.082	1
TP53	Del_4q34.3	0.082	1
PAM	3q-Amp	0.0833	1
Amp_5q35.3	Del_3p22.1	0.0864	1
PTEN	16q-Amp	0.0865	1
KIAA0922	KRT2	0.0868	1
KRTAP4-5	PIK3CA	0.0868	1
Del_11q22.3	Del_19q13.42	0.0869	1
SETD2	ZNF814	0.0872	1
SETD2	Del_16q24.2	0.0872	1
KRT2	17p-Amp	0.0879	1
ERBB2	ZNF814	0.0937	1
ATP1B1	BRAF	0.0968	1
Del_6q25.3	Del_16q24.2	0.0972	1
14q-Del	Del_2q22.1	0.0986	1
PTEN	16p-Amp	0.1	1
CUL3	Del_1p36.31	0.101	1
16q-Amp	Amp_5q35.3	0.101	1
KRT2	7p-Amp	0.102	1
KRT2	7q-Amp	0.102	1
KRT2	PTEN	0.103	1
PIK3CA	Del_2p12	0.103	1
CUL3	PAM	0.104	1
NF2	SETD2	0.105	1
Del_2p12	Del_9p21.3	0.105	1
Del_2q22.1	Del_14q24.2	0.105	1
2q-Amp	Amp_5q35.3	0.111	1
KRT2	Amp_7q31.2	0.115	1
CUL3	Amp_2q32.1	0.117	1
Amp_2q32.1	Del_2q37.3	0.117	1
Del_2q37.3	Del_6q25.3	0.117	1
KRT2	17q-Amp	0.119	1
FGFR3	TP53	0.12	1
NEFH	Del_14q11.2	0.12	1
16p-Amp	Amp_5q35.3	0.121	1
BCLAF1	Del_2q22.1	0.123	1
BCLAF1	Del_5p15.33	0.123	1
Del_2q22.1	Del_5p15.33	0.123	1
Amp_5q35.3	Del_1p36.31	0.127	1
Del_2q37.3	Del_11q22.3	0.129	1
Del_4q34.3	Del_16q24.2	0.129	1
MET	Del_14q24.2	0.13	1
NF2	20q-Amp	0.13	1
SMARCB1	22q-Del	0.134	1
22q-Del	Del_2q22.1	0.134	1
ALMS1	FGFR3	0.136	1
ALMS1	PIK3CA	0.136	1
BRAF	PCF11	0.136	1
NF2	20p-Amp	0.137	1
PBRM1	Del_6q25.3	0.138	1
Amp_2q32.1	Amp_5q35.3	0.138	1
BCLAF1	TP53	0.142	1
SMARCB1	Del_22q12.2	0.142	1
TP53	Del_2q22.1	0.142	1
Del_2q22.1	Del_22q12.2	0.142	1
Del_5p15.33	Del_22q12.2	0.142	1
PAM	12q-Amp	0.143	1
GXYLT1	Amp_5q35.3	0.149	1
MET	17q-Amp	0.149	1
PAM	12p-Amp	0.151	1
KRT2	Del_16q24.2	0.152	1
KRTAP4-5	Del_16q24.2	0.152	1
PAM	2q-Amp	0.153	1
Del_2q37.3	Del_4q34.3	0.154	1
KRT2	3p-Amp	0.157	1
MET	Del_14q11.2	0.159	1
SMARCB1	Del_19q13.42	0.161	1
Del_2p12	Del_19q13.42	0.161	1
Del_2q22.1	Del_19p13.3	0.161	1
Del_2q22.1	Del_19q13.42	0.161	1
CUL3	KRTAP4-5	0.167	1
CUL3	MET	0.167	1
CUL3	PIK3CA	0.167	1
FGFR3	Del_2q37.3	0.167	1
PCF11	PIK3CA	0.167	1
PAM	Amp_2q32.1	0.172	1
20q-Amp	Amp_5q35.3	0.173	1
ALMS1	Del_9p21.3	0.175	1
AR	12q-Amp	0.175	1
Del_9p21.3	Del_19p13.3	0.175	1
Del_9p21.3	Del_19q13.42	0.175	1
CCBL2	14q-Del	0.177	1
BCLAF1	Del_16q24.2	0.179	1
SMARCB1	Del_16q24.2	0.179	1
Del_5p15.33	Del_16q24.2	0.179	1
ERBB2	Del_11q22.3	0.181	1
20p-Amp	Amp_5q35.3	0.182	1
PBRM1	PIK3CA	0.183	1
PIK3CA	Amp_5q35.3	0.183	1
CCBL2	Del_14q24.2	0.184	1
NF2	16q-Amp	0.185	1
GXYLT1	20q-Amp	0.191	1
SETD2	Del_9p21.3	0.191	1
AR	12p-Amp	0.192	1
TP53	Del_1p36.31	0.194	1
GXYLT1	20p-Amp	0.196	1
MET	PBRM1	0.196	1
CCBL2	Del_14q11.2	0.197	1
BCLAF1	PCF11	0.198	1
BCLAF1	Del_2q37.3	0.198	1
CUL3	Del_5p15.33	0.198	1
KDM6A	Del_5p15.33	0.198	1
NEFH	NF2	0.198	1
NEFH	SMARCA4	0.198	1
NF2	SMARCB1	0.198	1
PCF11	SMARCB1	0.198	1
Del_2q37.3	Del_5p15.33	0.198	1
GXYLT1	2q-Amp	0.199	1
ZNF814	14q-Del	0.199	1
GXYLT1	7p-Amp	0.203	1
GXYLT1	7q-Amp	0.203	1
TP53	Del_16q24.2	0.206	1
MET	PAM	0.209	1
ZNF814	Del_14q24.2	0.211	1
AR	KIAA0922	0.213	1
AR	KRAS	0.213	1
AR	PIK3CA	0.213	1
PIK3CA	Del_3p22.1	0.213	1
BCLAF1	3p-Amp	0.214	1
NF2	16p-Amp	0.214	1
PTEN	3p-Amp	0.214	1
PBRM1	SMARCB1	0.215	1
PBRM1	Del_2q22.1	0.215	1
Amp_5q35.3	Del_2q22.1	0.215	1
KRT2	3q-Amp	0.218	1
GXYLT1	Amp_7q31.2	0.221	1
GXYLT1	Amp_2q32.1	0.223	1
MET	7p-Amp	0.223	1
MET	7q-Amp	0.223	1
CUL3	TP53	0.227	1
TP53	Del_2q37.3	0.227	1
AR	17p-Amp	0.232	1
ZNF814	Del_19q13.42	0.233	1
Del_16q24.2	Del_19q13.42	0.233	1
CUL3	14q-Del	0.235	1
ZNF814	Del_14q11.2	0.236	1
FGFR3	Del_11q23.3	0.242	1
KRT2	2q-Amp	0.242	1
KRT2	Del_11q23.3	0.242	1
ATP1B1	Amp_5q35.3	0.247	1
PBRM1	TP53	0.247	1
CUL3	Del_14q24.2	0.249	1
KDM6A	Del_9p21.3	0.249	1
AR	PTEN	0.25	1
SETD2	Del_6q25.3	0.252	1
PAM	14q-Del	0.254	1
ALMS1	KDM6A	0.255	1
ALMS1	NF2	0.255	1
CUL3	Del_19q13.42	0.255	1
PCF11	Del_19p13.3	0.255	1
12q-Amp	Amp_5q35.3	0.255	1
Del_2q37.3	Del_19p13.3	0.255	1
Del_2q37.3	Del_19q13.42	0.255	1
KIAA0922	SETD2	0.257	1
PIK3CA	SETD2	0.257	1
ZNF814	Del_16q24.2	0.258	1
PAM	Del_14q24.2	0.263	1
MET	Amp_7q31.2	0.267	1
FGFR3	Del_6q25.3	0.271	1
KRT2	Amp_2q32.1	0.271	1
14q-Del	Amp_5q35.3	0.272	1
12p-Amp	Amp_5q35.3	0.274	1
ALMS1	PBRM1	0.277	1
CUL3	Del_14q11.2	0.277	1
KRTAP4-5	20q-Amp	0.277	1
Amp_5q35.3	Del_19q13.42	0.277	1
PAM	Del_14q11.2	0.281	1
CUL3	Del_16q24.2	0.283	1
SMARCA4	ZNF814	0.283	1
KRT2	Del_11q22.3	0.284	1
KRTAP4-5	20p-Amp	0.284	1
NEFH	2q-Amp	0.284	1
2q-Amp	Del_2p12	0.284	1
2q-Amp	Del_2q22.1	0.284	1
Del_2p12	Del_11q23.3	0.284	1
Del_2q22.1	Del_11q23.3	0.284	1
Del_5p15.33	Del_11q23.3	0.284	1
ZNF814	Del_1p36.31	0.287	1
Amp_5q35.3	Del_9p21.3	0.287	1
Amp_5q35.3	Del_14q24.2	0.287	1
Del_1p36.31	Del_16q24.2	0.287	1
BCLAF1	3q-Amp	0.292	1
PTEN	3q-Amp	0.292	1
NEFH	16q-Amp	0.295	1
SETD2	SMARCB1	0.3	1
SETD2	Del_2q22.1	0.3	1
CUL3	22q-Del	0.306	1
MET	14q-Del	0.307	1
PBRM1	ZNF814	0.307	1
PBRM1	Del_16q24.2	0.307	1
Amp_5q35.3	Del_16q24.2	0.307	1
KDM6A	Del_2q37.3	0.309	1
NF2	Del_2q37.3	0.309	1
KRT2	Del_4q34.3	0.312	1
KRTAP4-5	Del_4q34.3	0.312	1
MET	Del_11q23.3	0.312	1
PIK3CA	Del_4q34.3	0.312	1
BCLAF1	Amp_2q32.1	0.316	1
NEFH	Amp_2q32.1	0.316	1
NEFH	Del_6q25.3	0.316	1
SMARCB1	Del_6q25.3	0.316	1
Amp_2q32.1	Del_2p12	0.316	1
Amp_2q32.1	Del_5p15.33	0.316	1
Del_2p12	Del_6q25.3	0.316	1
Del_2q22.1	Del_6q25.3	0.316	1
Amp_5q35.3	Del_14q11.2	0.318	1
ALMS1	AR	0.32	1
CUL3	Del_22q12.2	0.32	1
AR	17q-Amp	0.323	1
ATP1B1	Del_11q23.3	0.323	1
NEFH	16p-Amp	0.323	1
TP53	2q-Amp	0.323	1
TP53	Del_11q23.3	0.323	1
KIAA0922	MET	0.325	1
SETD2	12q-Amp	0.329	1
Del_2p12	Del_11q22.3	0.331	1
Del_2q22.1	Del_11q22.3	0.331	1
Del_5p15.33	Del_11q22.3	0.331	1
NF2	Del_1p36.31	0.334	1
CUL3	Amp_5q35.3	0.335	1
NF2	Amp_5q35.3	0.335	1
PBRM1	PCF11	0.335	1
PBRM1	Del_2q37.3	0.335	1
17q-Amp	Amp_5q35.3	0.337	1
ATP1B1	SETD2	0.341	1
SETD2	TP53	0.341	1
KDM6A	20q-Amp	0.343	1
KRAS	12q-Amp	0.344	1
KRTAP4-5	12q-Amp	0.344	1
22q-Del	Amp_5q35.3	0.349	1
AR	ZNF814	0.352	1
AR	Del_16q24.2	0.352	1
ZNF814	Del_3p22.1	0.352	1
KDM6A	20p-Amp	0.354	1
ZNF814	16p-Amp	0.354	1
SETD2	12p-Amp	0.355	1
ERBB2	17p-Amp	0.357	1
PAM	17p-Amp	0.357	1
TP53	Amp_2q32.1	0.358	1
TP53	Del_6q25.3	0.358	1
KRAS	12p-Amp	0.36	1
KRTAP4-5	12p-Amp	0.36	1
BCLAF1	20q-Amp	0.362	1
PBRM1	Amp_5q35.3	0.362	1
SMARCB1	Del_4q34.3	0.362	1
Amp_5q35.3	Del_22q12.2	0.364	1
BCLAF1	20p-Amp	0.371	1
CCBL2	20q-Amp	0.372	1
ATP1B1	Del_11q22.3	0.375	1
TP53	Del_11q22.3	0.375	1
CCBL2	20p-Amp	0.378	1
ALMS1	SETD2	0.379	1
PAM	3p-Amp	0.379	1
AR	CUL3	0.383	1
AR	Del_2q37.3	0.383	1
NF2	Del_3p22.1	0.383	1
GXYLT1	16q-Amp	0.386	1
KRAS	14q-Del	0.388	1
ZNF814	2q-Amp	0.395	1
ALMS1	Del_6q25.3	0.398	1
Del_6q25.3	Del_19q13.42	0.398	1
MET	Del_11q22.3	0.399	1
KRAS	Del_14q24.2	0.4	1
CUL3	16q-Amp	0.408	1
KDM6A	16q-Amp	0.408	1
ERBB2	17q-Amp	0.409	1
PAM	17q-Amp	0.409	1
AR	16q-Amp	0.41	1
GXYLT1	16p-Amp	0.412	1
PBRM1	Del_3p22.1	0.413	1
AR	3q-Amp	0.419	1
CCBL2	12q-Amp	0.422	1
ATP1B1	MET	0.424	1
KRAS	Del_14q11.2	0.424	1
CUL3	2q-Amp	0.429	1
NF2	Del_11q23.3	0.429	1
SMARCA4	2q-Amp	0.429	1
SMARCA4	Del_11q23.3	0.429	1
Del_2q37.3	Del_11q23.3	0.429	1
CCBL2	12p-Amp	0.433	1
ALMS1	3q-Amp	0.434	1
2q-Amp	Del_9p21.3	0.435	1
ZNF814	Amp_2q32.1	0.436	1
KDM6A	3p-Amp	0.445	1
NEFH	14q-Del	0.446	1
SMARCB1	14q-Del	0.446	1
14q-Del	Del_2p12	0.446	1
14q-Del	Del_5p15.33	0.446	1
CUL3	16p-Amp	0.447	1
KDM6A	16p-Amp	0.447	1
SETD2	14q-Del	0.449	1
SETD2	Del_2q37.3	0.45	1
MET	Del_4q34.3	0.454	1
AR	16p-Amp	0.455	1
NEFH	Del_9p21.3	0.459	1
NEFH	Del_14q24.2	0.459	1
SMARCB1	Del_14q24.2	0.459	1
Del_2p12	Del_14q24.2	0.459	1
Del_5p15.33	Del_14q24.2	0.459	1
SETD2	16p-Amp	0.461	1
BCLAF1	17p-Amp	0.463	1
AR	Del_3p22.1	0.468	1
PIK3CA	Del_1p36.31	0.468	1
SETD2	Del_14q24.2	0.47	1
CUL3	Del_6q25.3	0.471	1
GXYLT1	3p-Amp	0.471	1
KDM6A	Del_6q25.3	0.471	1
SMARCA4	Amp_2q32.1	0.471	1
20q-Amp	Del_6q25.3	0.483	1
SMARCB1	Del_14q11.2	0.484	1
Del_2p12	Del_14q11.2	0.484	1
Del_2q22.1	Del_14q11.2	0.484	1
Del_5p15.33	Del_14q11.2	0.484	1
KDM6A	Del_11q22.3	0.491	1
NF2	Del_11q22.3	0.491	1
TP53	14q-Del	0.498	1
20p-Amp	Del_6q25.3	0.498	1
ZNF814	3q-Amp	0.499	1
NEFH	7p-Amp	0.5	1
NEFH	7q-Amp	0.5	1
PTEN	7p-Amp	0.5	1
PTEN	7q-Amp	0.5	1
SMARCB1	7p-Amp	0.5	1
SMARCB1	7q-Amp	0.5	1
PAM	20q-Amp	0.503	1
Amp_2q32.1	Del_9p21.3	0.504	1
Amp_5q35.3	Del_6q25.3	0.504	1
22q-Del	Del_2p12	0.509	1
22q-Del	Del_5p15.33	0.509	1
PAM	20p-Amp	0.51	1
SETD2	Del_14q11.2	0.51	1
TP53	Del_9p21.3	0.512	1
TP53	Del_14q24.2	0.512	1
KRAS	16q-Amp	0.516	1
KRT2	16q-Amp	0.516	1
KRTAP4-5	16q-Amp	0.516	1
12p-Amp	Del_14q24.2	0.516	1
AR	Del_11q23.3	0.519	1
2q-Amp	Del_3p22.1	0.519	1
ALMS1	20q-Amp	0.52	1
20q-Amp	Del_19p13.3	0.52	1
20q-Amp	Del_19q13.42	0.52	1
Del_2p12	Del_22q12.2	0.521	1
20q-Amp	Del_3p22.1	0.528	1
CUL3	Del_4q34.3	0.529	1
KDM6A	Del_4q34.3	0.529	1
PCF11	Del_4q34.3	0.529	1
SMARCA4	Del_4q34.3	0.529	1
ALMS1	20p-Amp	0.53	1
NEFH	Amp_7q31.2	0.53	1
PTEN	Amp_7q31.2	0.53	1
SMARCB1	Amp_7q31.2	0.53	1
20p-Amp	Del_19p13.3	0.53	1
20p-Amp	Del_19q13.42	0.53	1
NEFH	Del_1p36.31	0.532	1
Del_1p36.31	Del_5p15.33	0.532	1
AR	Amp_7q31.2	0.533	1
BCLAF1	17q-Amp	0.537	1
ALMS1	16p-Amp	0.539	1
TP53	Del_14q11.2	0.539	1
16p-Amp	Del_19p13.3	0.539	1
CCBL2	16q-Amp	0.54	1
20p-Amp	Del_3p22.1	0.541	1
AR	SETD2	0.543	1
KRAS	16p-Amp	0.545	1
KRT2	16p-Amp	0.545	1
KRTAP4-5	16p-Amp	0.545	1
GXYLT1	3q-Amp	0.547	1
2q-Amp	Del_1p36.31	0.548	1
20p-Amp	Del_11q22.3	0.549	1
FGFR3	3p-Amp	0.55	1
KRTAP4-5	3p-Amp	0.55	1
CCBL2	16p-Amp	0.56	1
KDM6A	3q-Amp	0.56	1
AR	Amp_2q32.1	0.565	1
Amp_2q32.1	Del_3p22.1	0.565	1
20q-Amp	Del_14q11.2	0.582	1
MET	Amp_5q35.3	0.583	1
AR	Del_11q22.3	0.587	1
ZNF814	20q-Amp	0.589	1
MET	12q-Amp	0.595	1
ZNF814	16q-Amp	0.596	1
ZNF814	20p-Amp	0.599	1
20p-Amp	Del_14q11.2	0.602	1
ZNF814	Del_9p21.3	0.604	1
12p-Amp	Del_14q11.2	0.604	1
BRAF	20q-Amp	0.607	1
ALMS1	12q-Amp	0.609	1
12q-Amp	Del_19q13.42	0.609	1
ALMS1	22q-Del	0.614	1
BRAF	20p-Amp	0.614	1
SMARCB1	3p-Amp	0.617	1
3p-Amp	Del_5p15.33	0.617	1
Amp_2q32.1	Del_1p36.31	0.62	1
MET	12p-Amp	0.625	1
ALMS1	Del_22q12.2	0.626	1
ALMS1	12p-Amp	0.627	1
BCLAF1	16q-Amp	0.627	1
SMARCB1	16q-Amp	0.627	1
12p-Amp	Del_19q13.42	0.627	1
16q-Amp	Del_5p15.33	0.627	1
FGFR3	3q-Amp	0.629	1
KRTAP4-5	3q-Amp	0.629	1
PCF11	14q-Del	0.629	1
14q-Del	Del_2q37.3	0.629	1
20q-Amp	Del_11q23.3	0.634	1
CUL3	Del_9p21.3	0.644	1
PCF11	Del_14q24.2	0.644	1
SMARCA4	Del_9p21.3	0.644	1
Del_2q37.3	Del_14q24.2	0.644	1
MET	Del_3p22.1	0.645	1
20p-Amp	Del_11q23.3	0.647	1
BCLAF1	16p-Amp	0.656	1
SMARCB1	16p-Amp	0.656	1
16p-Amp	Del_5p15.33	0.656	1
12p-Amp	14q-Del	0.657	1
ZNF814	22q-Del	0.658	1
12p-Amp	Del_3p22.1	0.662	1
PBRM1	14q-Del	0.665	1
12q-Amp	Del_14q24.2	0.665	1
BRAF	12q-Amp	0.667	1
ZNF814	Del_22q12.2	0.67	1
KIAA0922	17p-Amp	0.671	1
KRTAP4-5	17p-Amp	0.671	1
PCF11	Del_14q11.2	0.671	1
PIK3CA	17p-Amp	0.671	1
KDM6A	7p-Amp	0.673	1
KDM6A	7q-Amp	0.673	1
ATP1B1	3p-Amp	0.674	1
ZNF814	12q-Amp	0.677	1
PBRM1	Del_9p21.3	0.679	1
PBRM1	Del_14q24.2	0.679	1
BRAF	12p-Amp	0.68	1
2q-Amp	Del_4q34.3	0.681	1
ERBB2	16q-Amp	0.689	1
FGFR3	20q-Amp	0.69	1
KIAA0922	20q-Amp	0.69	1
KRAS	20q-Amp	0.69	1
KRT2	20q-Amp	0.69	1
PIK3CA	20q-Amp	0.69	1
ALMS1	17p-Amp	0.695	1
ZNF814	12p-Amp	0.695	1
SMARCB1	3q-Amp	0.696	1
3q-Amp	Del_5p15.33	0.696	1
FGFR3	20p-Amp	0.697	1
KIAA0922	20p-Amp	0.697	1
KRAS	20p-Amp	0.697	1
KRT2	20p-Amp	0.697	1
PIK3CA	20p-Amp	0.697	1
KIAA0922	7p-Amp	0.701	1
KIAA0922	7q-Amp	0.701	1
KRTAP4-5	7p-Amp	0.701	1
KRTAP4-5	7q-Amp	0.701	1
KDM6A	Amp_7q31.2	0.707	1
PBRM1	Del_14q11.2	0.707	1
PCF11	Amp_7q31.2	0.707	1
ERBB2	16p-Amp	0.708	1
KDM6A	Del_22q12.2	0.709	1
PCF11	16p-Amp	0.711	1
PCF11	17q-Amp	0.715	1
17p-Amp	Amp_5q35.3	0.717	1
SMARCA4	Del_1p36.31	0.721	1
ALMS1	3p-Amp	0.723	1
KIAA0922	Amp_7q31.2	0.724	1
KRTAP4-5	Amp_7q31.2	0.724	1
AR	14q-Del	0.726	1
Amp_2q32.1	Del_4q34.3	0.727	1
KIAA0922	17q-Amp	0.73	1
KRTAP4-5	17q-Amp	0.73	1
PIK3CA	17q-Amp	0.73	1
KDM6A	12q-Amp	0.736	1
PCF11	12q-Amp	0.736	1
MET	Del_1p36.31	0.738	1
12q-Amp	Del_14q11.2	0.739	1
AR	Del_9p21.3	0.74	1
AR	Del_14q24.2	0.74	1
MET	Del_6q25.3	0.745	1
KRT2	12q-Amp	0.748	1
PIK3CA	12q-Amp	0.748	1
ATP1B1	3q-Amp	0.752	1
KDM6A	12p-Amp	0.753	1
PCF11	12p-Amp	0.753	1
NEFH	20q-Amp	0.755	1
PTEN	20q-Amp	0.755	1
ALMS1	Amp_7q31.2	0.758	1
KRT2	12p-Amp	0.76	1
PIK3CA	12p-Amp	0.76	1
NEFH	20p-Amp	0.762	1
PTEN	20p-Amp	0.762	1
20q-Amp	Del_11q22.3	0.762	1
ALMS1	17q-Amp	0.765	1
ZNF814	3p-Amp	0.765	1
AR	Del_14q11.2	0.767	1
NEFH	17p-Amp	0.775	1
PTEN	17p-Amp	0.775	1
SMARCB1	17p-Amp	0.775	1
PBRM1	16p-Amp	0.776	1
2q-Amp	14q-Del	0.777	1
ZNF814	17p-Amp	0.779	1
16p-Amp	Del_11q22.3	0.784	1
PBRM1	12q-Amp	0.785	1
ALMS1	16q-Amp	0.789	1
AR	22q-Del	0.79	1
BRAF	16q-Amp	0.79	1
2q-Amp	Del_14q24.2	0.79	1
AR	20q-Amp	0.792	1
12q-Amp	14q-Del	0.794	1
PCF11	3p-Amp	0.8	1
AR	20p-Amp	0.801	1
AR	Del_22q12.2	0.801	1
BCLAF1	7p-Amp	0.801	1
BCLAF1	7q-Amp	0.801	1
PBRM1	12p-Amp	0.801	1
16p-Amp	Del_11q23.3	0.803	1
ATP1B1	20q-Amp	0.807	1
BRAF	16p-Amp	0.807	1
ERBB2	7p-Amp	0.808	1
ERBB2	7q-Amp	0.808	1
PAM	7p-Amp	0.808	1
PAM	7q-Amp	0.808	1
BCLAF1	12q-Amp	0.809	1
NEFH	12q-Amp	0.809	1
PTEN	12q-Amp	0.809	1
SMARCB1	12q-Amp	0.809	1
ZNF814	7p-Amp	0.811	1
ZNF814	7q-Amp	0.811	1
AR	Del_1p36.31	0.812	1
ATP1B1	20p-Amp	0.813	1
16p-Amp	Del_22q12.2	0.813	1
20q-Amp	22q-Del	0.815	1
2q-Amp	Del_14q11.2	0.815	1
SETD2	16q-Amp	0.816	1
14q-Del	Amp_2q32.1	0.819	1
BCLAF1	12p-Amp	0.82	1
NEFH	12p-Amp	0.82	1
PTEN	12p-Amp	0.82	1
SMARCB1	12p-Amp	0.82	1
BCLAF1	Amp_7q31.2	0.821	1
ERBB2	Amp_7q31.2	0.822	1
PAM	Amp_7q31.2	0.822	1
NEFH	17q-Amp	0.826	1
PTEN	17q-Amp	0.826	1
SMARCB1	17q-Amp	0.826	1
17q-Amp	Del_5p15.33	0.826	1
12p-Amp	22q-Del	0.827	1
20p-Amp	22q-Del	0.828	1
20q-Amp	14q-Del	0.83	1
3p-Amp	Amp_5q35.3	0.831	1
Amp_2q32.1	Del_14q24.2	0.831	1
3p-Amp	Del_14q11.2	0.833	1
ZNF814	Amp_7q31.2	0.834	1
3q-Amp	Del_16q24.2	0.835	1
20q-Amp	Del_22q12.2	0.838	1
ZNF814	17q-Amp	0.839	1
20p-Amp	14q-Del	0.841	1
KDM6A	17p-Amp	0.843	1
PCF11	17p-Amp	0.843	1
16q-Amp	Del_16q24.2	0.844	1
20p-Amp	Del_22q12.2	0.85	1
MET	20q-Amp	0.851	1
12p-Amp	Del_22q12.2	0.852	1
20q-Amp	Del_9p21.3	0.853	1
20q-Amp	Del_14q24.2	0.853	1
Amp_2q32.1	Del_14q11.2	0.853	1
ATP1B1	12q-Amp	0.856	1
FGFR3	16q-Amp	0.859	1
KIAA0922	16q-Amp	0.859	1
PIK3CA	16q-Amp	0.859	1
20q-Amp	Del_1p36.31	0.859	1
MET	20p-Amp	0.86	1
12q-Amp	Del_3p22.1	0.861	1
16p-Amp	Del_16q24.2	0.864	1
20p-Amp	Del_9p21.3	0.864	1
20p-Amp	Del_14q24.2	0.864	1
ATP1B1	12p-Amp	0.865	1
CUL3	3q-Amp	0.865	1
PCF11	3q-Amp	0.865	1
3q-Amp	Del_11q22.3	0.866	1
PCF11	7p-Amp	0.869	1
PCF11	7q-Amp	0.869	1
20p-Amp	Del_1p36.31	0.87	1
22q-Del	Amp_2q32.1	0.872	1
FGFR3	16p-Amp	0.873	1
KIAA0922	16p-Amp	0.873	1
PIK3CA	16p-Amp	0.873	1
AR	7p-Amp	0.874	1
AR	7q-Amp	0.874	1
BRAF	17p-Amp	0.875	1
AR	3p-Amp	0.878	1
20q-Amp	Del_16q24.2	0.88	1
SETD2	20q-Amp	0.881	1
16p-Amp	22q-Del	0.881	1
16p-Amp	Del_6q25.3	0.881	1
Amp_2q32.1	Del_22q12.2	0.881	1
20p-Amp	Del_16q24.2	0.885	1
PCF11	16q-Amp	0.886	1
SETD2	20p-Amp	0.888	1
PBRM1	3q-Amp	0.89	1
TP53	17q-Amp	0.89	1
3q-Amp	Amp_5q35.3	0.89	1
12q-Amp	Del_19p13.3	0.891	1
CUL3	17q-Amp	0.892	1
KDM6A	17q-Amp	0.892	1
NF2	17q-Amp	0.892	1
3q-Amp	Del_9p21.3	0.896	1
12p-Amp	Del_19p13.3	0.899	1
SETD2	Amp_7q31.2	0.902	1
BRAF	17q-Amp	0.903	1
16q-Amp	Del_2p12	0.905	1
PCF11	20q-Amp	0.906	1
20q-Amp	Del_2q37.3	0.906	1
12q-Amp	22q-Del	0.908	1
PCF11	20p-Amp	0.91	1
20p-Amp	Del_2q37.3	0.91	1
12p-Amp	Del_4q34.3	0.911	1
PBRM1	7p-Amp	0.912	1
PBRM1	7q-Amp	0.912	1
12q-Amp	Del_11q23.3	0.912	1
7p-Amp	Amp_5q35.3	0.912	1
7q-Amp	Amp_5q35.3	0.912	1
16p-Amp	Del_14q11.2	0.914	1
16p-Amp	Del_2p12	0.916	1
16p-Amp	Del_2q22.1	0.916	1
ALMS1	7p-Amp	0.917	1
ALMS1	7q-Amp	0.917	1
12q-Amp	Del_16q24.2	0.918	1
MET	3q-Amp	0.919	1
12p-Amp	Del_11q23.3	0.921	1
MET	22q-Del	0.923	1
12q-Amp	Del_22q12.2	0.923	1
3q-Amp	Del_14q11.2	0.923	1
12p-Amp	Del_16q24.2	0.925	1
FGFR3	17p-Amp	0.926	1
KRAS	17p-Amp	0.926	1
PBRM1	Amp_7q31.2	0.926	1
SETD2	3p-Amp	0.926	1
Amp_5q35.3	Amp_7q31.2	0.926	1
3q-Amp	Del_3p22.1	0.927	1
MET	Del_22q12.2	0.929	1
PBRM1	17q-Amp	0.929	1
ATP1B1	16q-Amp	0.936	1
TP53	16q-Amp	0.936	1
FGFR3	7p-Amp	0.937	1
FGFR3	7q-Amp	0.937	1
12p-Amp	Del_9p21.3	0.938	1
16q-Amp	Del_22q12.2	0.94	1
16p-Amp	Del_14q24.2	0.941	1
FGFR3	Amp_7q31.2	0.944	1
PIK3CA	Amp_7q31.2	0.944	1
ATP1B1	16p-Amp	0.945	1
TP53	16p-Amp	0.945	1
FGFR3	17q-Amp	0.946	1
KRAS	17q-Amp	0.946	1
20q-Amp	Del_4q34.3	0.946	1
12p-Amp	Del_1p36.31	0.947	1
16p-Amp	Del_4q34.3	0.948	1
3p-Amp	Del_11q22.3	0.948	1
20p-Amp	Del_4q34.3	0.95	1
16q-Amp	Del_6q25.3	0.951	1
12p-Amp	Del_6q25.3	0.952	1
3q-Amp	Del_11q23.3	0.952	1
12q-Amp	Del_11q22.3	0.957	1
16q-Amp	Del_19p13.3	0.957	1
17p-Amp	Del_5p15.33	0.957	1
CUL3	17p-Amp	0.958	1
NF2	17p-Amp	0.958	1
SETD2	7p-Amp	0.958	1
SETD2	7q-Amp	0.958	1
17p-Amp	Del_2q37.3	0.958	1
17q-Amp	Del_16q24.2	0.958	1
SETD2	3q-Amp	0.961	1
12p-Amp	Del_11q22.3	0.962	1
3p-Amp	Del_4q34.3	0.963	1
16p-Amp	Del_19q13.42	0.964	1
16q-Amp	Del_11q22.3	0.964	1
7p-Amp	Del_2p12	0.964	1
7p-Amp	Del_5p15.33	0.964	1
7q-Amp	Del_2p12	0.964	1
7q-Amp	Del_5p15.33	0.964	1
16p-Amp	Del_3p22.1	0.966	1
CUL3	7p-Amp	0.968	1
CUL3	7q-Amp	0.968	1
16p-Amp	Del_1p36.31	0.968	1
MET	3p-Amp	0.969	1
Amp_7q31.2	Del_2p12	0.969	1
Amp_7q31.2	Del_5p15.33	0.969	1
SETD2	17q-Amp	0.97	1
16q-Amp	22q-Del	0.97	1
17q-Amp	Del_2p12	0.97	1
17q-Amp	Del_2q22.1	0.97	1
16p-Amp	14q-Del	0.972	1
12q-Amp	Del_4q34.3	0.973	1
CUL3	Amp_7q31.2	0.974	1
ATP1B1	17p-Amp	0.975	1
TP53	17p-Amp	0.975	1
17q-Amp	Del_2q37.3	0.975	1
12q-Amp	Del_1p36.31	0.978	1
12q-Amp	Del_9p21.3	0.978	1
ATP1B1	7p-Amp	0.979	1
ATP1B1	7q-Amp	0.979	1
TP53	7p-Amp	0.979	1
TP53	7q-Amp	0.979	1
16q-Amp	Del_11q23.3	0.979	1
16q-Amp	Del_4q34.3	0.981	1
ATP1B1	Amp_7q31.2	0.983	1
TP53	Amp_7q31.2	0.983	1
16q-Amp	Del_14q11.2	0.983	1
3q-Amp	Del_4q34.3	0.983	1
ATP1B1	17q-Amp	0.984	1
MET	16q-Amp	0.986	1
PBRM1	16q-Amp	0.987	1
17q-Amp	Del_11q22.3	0.987	1
7p-Amp	Del_19p13.3	0.988	1
7q-Amp	Del_19p13.3	0.988	1
17q-Amp	Del_11q23.3	0.989	1
3p-Amp	Del_9p21.3	0.989	1
MET	16p-Amp	0.99	1
16q-Amp	Del_14q24.2	0.991	1
17p-Amp	Del_16q24.2	0.991	1
17q-Amp	Del_19p13.3	0.991	1
3q-Amp	Del_1p36.31	0.991	1
Amp_7q31.2	Del_19p13.3	0.991	1
12q-Amp	Del_6q25.3	0.992	1
7p-Amp	Del_16q24.2	0.993	1
7q-Amp	Del_16q24.2	0.993	1
16p-Amp	Del_9p21.3	0.994	1
16q-Amp	Del_3p22.1	0.994	1
3p-Amp	Del_22q12.2	0.995	1
3q-Amp	14q-Del	0.995	1
Amp_7q31.2	Del_16q24.2	0.995	1
NF2	7p-Amp	0.996	1
NF2	7q-Amp	0.996	1
3q-Amp	Del_14q24.2	0.996	1
NF2	Amp_7q31.2	0.997	1
PBRM1	17p-Amp	0.997	1
16q-Amp	14q-Del	0.997	1
7p-Amp	Del_11q23.3	0.997	1
7q-Amp	Del_11q23.3	0.997	1
SETD2	17p-Amp	0.998	1
17q-Amp	Del_22q12.2	0.998	1
Amp_7q31.2	Del_11q23.3	0.998	1
Amp_7q31.2	Del_14q11.2	0.998	1
16q-Amp	Del_1p36.31	0.999	1
17p-Amp	Del_11q22.3	0.999	1
17q-Amp	22q-Del	0.999	1
17q-Amp	Del_4q34.3	0.999	1
17q-Amp	Del_6q25.3	0.999	1
3q-Amp	Del_22q12.2	0.999	1
7p-Amp	Del_3p22.1	0.999	1
7p-Amp	Del_11q22.3	0.999	1
7p-Amp	Del_14q11.2	0.999	1
7p-Amp	Del_22q12.2	0.999	1
7q-Amp	Del_3p22.1	0.999	1
7q-Amp	Del_11q22.3	0.999	1
7q-Amp	Del_14q11.2	0.999	1
7q-Amp	Del_22q12.2	0.999	1
ALMS1	ATP1B1	1	1
ALMS1	BCLAF1	1	1
ALMS1	BRAF	1	1
ALMS1	CCBL2	1	1
ALMS1	CUL3	1	1
ALMS1	ERBB2	1	1
ALMS1	GXYLT1	1	1
ALMS1	KIAA0922	1	1
ALMS1	KRAS	1	1
ALMS1	KRT2	1	1
ALMS1	KRTAP4-5	1	1
ALMS1	MET	1	1
ALMS1	NEFH	1	1
ALMS1	PAM	1	1
ALMS1	PCF11	1	1
ALMS1	PTEN	1	1
ALMS1	SMARCA4	1	1
ALMS1	SMARCB1	1	1
ALMS1	TP53	1	1
ALMS1	ZNF814	1	1
ALMS1	2q-Amp	1	1
ALMS1	14q-Del	1	1
ALMS1	Amp_2q32.1	1	1
ALMS1	Amp_5q35.3	1	1
ALMS1	Del_1p36.31	1	1
ALMS1	Del_2p12	1	1
ALMS1	Del_2q22.1	1	1
ALMS1	Del_2q37.3	1	1
ALMS1	Del_3p22.1	1	1
ALMS1	Del_4q34.3	1	1
ALMS1	Del_5p15.33	1	1
ALMS1	Del_11q22.3	1	1
ALMS1	Del_11q23.3	1	1
ALMS1	Del_14q11.2	1	1
ALMS1	Del_14q24.2	1	1
ALMS1	Del_16q24.2	1	1
ALMS1	Del_19p13.3	1	1
ALMS1	Del_19q13.42	1	1
AR	ATP1B1	1	1
AR	BCLAF1	1	1
AR	BRAF	1	1
AR	CCBL2	1	1
AR	ERBB2	1	1
AR	FGFR3	1	1
AR	GXYLT1	1	1
AR	KDM6A	1	1
AR	KRT2	1	1
AR	KRTAP4-5	1	1
AR	MET	1	1
AR	NEFH	1	1
AR	NF2	1	1
AR	PAM	1	1
AR	PBRM1	1	1
AR	SMARCA4	1	1
AR	SMARCB1	1	1
AR	TP53	1	1
AR	2q-Amp	1	1
AR	Amp_5q35.3	1	1
AR	Del_2p12	1	1
AR	Del_2q22.1	1	1
AR	Del_4q34.3	1	1
AR	Del_5p15.33	1	1
AR	Del_6q25.3	1	1
AR	Del_19p13.3	1	1
AR	Del_19q13.42	1	1
ATP1B1	BCLAF1	1	1
ATP1B1	CCBL2	1	1
ATP1B1	CUL3	1	1
ATP1B1	ERBB2	1	1
ATP1B1	FGFR3	1	1
ATP1B1	GXYLT1	1	1
ATP1B1	KDM6A	1	1
ATP1B1	KIAA0922	1	1
ATP1B1	KRAS	1	1
ATP1B1	KRT2	1	1
ATP1B1	KRTAP4-5	1	1
ATP1B1	NEFH	1	1
ATP1B1	NF2	1	1
ATP1B1	PAM	1	1
ATP1B1	PBRM1	1	1
ATP1B1	PIK3CA	1	1
ATP1B1	PTEN	1	1
ATP1B1	SMARCA4	1	1
ATP1B1	SMARCB1	1	1
ATP1B1	TP53	1	1
ATP1B1	ZNF814	1	1
ATP1B1	2q-Amp	1	1
ATP1B1	Amp_2q32.1	1	1
ATP1B1	Del_2p12	1	1
ATP1B1	Del_2q22.1	1	1
ATP1B1	Del_2q37.3	1	1
ATP1B1	Del_3p22.1	1	1
ATP1B1	Del_5p15.33	1	1
ATP1B1	Del_6q25.3	1	1
ATP1B1	Del_9p21.3	1	1
ATP1B1	Del_16q24.2	1	1
ATP1B1	Del_19p13.3	1	1
BCLAF1	BRAF	1	1
BCLAF1	CCBL2	1	1
BCLAF1	CUL3	1	1
BCLAF1	ERBB2	1	1
BCLAF1	FGFR3	1	1
BCLAF1	GXYLT1	1	1
BCLAF1	KDM6A	1	1
BCLAF1	KIAA0922	1	1
BCLAF1	KRAS	1	1
BCLAF1	KRT2	1	1
BCLAF1	KRTAP4-5	1	1
BCLAF1	MET	1	1
BCLAF1	NEFH	1	1
BCLAF1	NF2	1	1
BCLAF1	PAM	1	1
BCLAF1	PBRM1	1	1
BCLAF1	PTEN	1	1
BCLAF1	SETD2	1	1
BCLAF1	SMARCA4	1	1
BCLAF1	SMARCB1	1	1
BCLAF1	ZNF814	1	1
BCLAF1	2q-Amp	1	1
BCLAF1	14q-Del	1	1
BCLAF1	22q-Del	1	1
BCLAF1	Amp_5q35.3	1	1
BCLAF1	Del_1p36.31	1	1
BCLAF1	Del_2p12	1	1
BCLAF1	Del_3p22.1	1	1
BCLAF1	Del_4q34.3	1	1
BCLAF1	Del_6q25.3	1	1
BCLAF1	Del_9p21.3	1	1
BCLAF1	Del_11q22.3	1	1
BCLAF1	Del_11q23.3	1	1
BCLAF1	Del_14q11.2	1	1
BCLAF1	Del_14q24.2	1	1
BCLAF1	Del_19p13.3	1	1
BCLAF1	Del_19q13.42	1	1
BCLAF1	Del_22q12.2	1	1
BRAF	CCBL2	1	1
BRAF	CUL3	1	1
BRAF	ERBB2	1	1
BRAF	FGFR3	1	1
BRAF	GXYLT1	1	1
BRAF	KDM6A	1	1
BRAF	KIAA0922	1	1
BRAF	KRAS	1	1
BRAF	KRT2	1	1
BRAF	KRTAP4-5	1	1
BRAF	MET	1	1
BRAF	NEFH	1	1
BRAF	NF2	1	1
BRAF	PAM	1	1
BRAF	PBRM1	1	1
BRAF	PIK3CA	1	1
BRAF	PTEN	1	1
BRAF	SETD2	1	1
BRAF	SMARCA4	1	1
BRAF	SMARCB1	1	1
BRAF	TP53	1	1
BRAF	ZNF814	1	1
BRAF	2q-Amp	1	1
BRAF	3p-Amp	1	1
BRAF	3q-Amp	1	1
BRAF	7p-Amp	1	1
BRAF	7q-Amp	1	1
BRAF	14q-Del	1	1
BRAF	22q-Del	1	1
BRAF	Amp_2q32.1	1	1
BRAF	Amp_5q35.3	1	1
BRAF	Amp_7q31.2	1	1
BRAF	Del_1p36.31	1	1
BRAF	Del_2p12	1	1
BRAF	Del_2q22.1	1	1
BRAF	Del_2q37.3	1	1
BRAF	Del_3p22.1	1	1
BRAF	Del_4q34.3	1	1
BRAF	Del_5p15.33	1	1
BRAF	Del_6q25.3	1	1
BRAF	Del_9p21.3	1	1
BRAF	Del_11q22.3	1	1
BRAF	Del_11q23.3	1	1
BRAF	Del_14q11.2	1	1
BRAF	Del_14q24.2	1	1
BRAF	Del_16q24.2	1	1
BRAF	Del_19p13.3	1	1
BRAF	Del_19q13.42	1	1
BRAF	Del_22q12.2	1	1
CCBL2	CUL3	1	1
CCBL2	ERBB2	1	1
CCBL2	FGFR3	1	1
CCBL2	GXYLT1	1	1
CCBL2	KDM6A	1	1
CCBL2	KRT2	1	1
CCBL2	KRTAP4-5	1	1
CCBL2	MET	1	1
CCBL2	NEFH	1	1
CCBL2	NF2	1	1
CCBL2	PAM	1	1
CCBL2	PBRM1	1	1
CCBL2	PCF11	1	1
CCBL2	PIK3CA	1	1
CCBL2	PTEN	1	1
CCBL2	SETD2	1	1
CCBL2	SMARCA4	1	1
CCBL2	SMARCB1	1	1
CCBL2	TP53	1	1
CCBL2	ZNF814	1	1
CCBL2	17p-Amp	1	1
CCBL2	17q-Amp	1	1
CCBL2	2q-Amp	1	1
CCBL2	3p-Amp	1	1
CCBL2	3q-Amp	1	1
CCBL2	7p-Amp	1	1
CCBL2	7q-Amp	1	1
CCBL2	22q-Del	1	1
CCBL2	Amp_2q32.1	1	1
CCBL2	Amp_5q35.3	1	1
CCBL2	Amp_7q31.2	1	1
CCBL2	Del_1p36.31	1	1
CCBL2	Del_2p12	1	1
CCBL2	Del_2q22.1	1	1
CCBL2	Del_2q37.3	1	1
CCBL2	Del_3p22.1	1	1
CCBL2	Del_4q34.3	1	1
CCBL2	Del_5p15.33	1	1
CCBL2	Del_6q25.3	1	1
CCBL2	Del_9p21.3	1	1
CCBL2	Del_11q22.3	1	1
CCBL2	Del_11q23.3	1	1
CCBL2	Del_16q24.2	1	1
CCBL2	Del_19p13.3	1	1
CCBL2	Del_19q13.42	1	1
CCBL2	Del_22q12.2	1	1
CUL3	ERBB2	1	1
CUL3	FGFR3	1	1
CUL3	GXYLT1	1	1
CUL3	KDM6A	1	1
CUL3	KIAA0922	1	1
CUL3	KRAS	1	1
CUL3	KRT2	1	1
CUL3	NEFH	1	1
CUL3	NF2	1	1
CUL3	PBRM1	1	1
CUL3	PCF11	1	1
CUL3	PTEN	1	1
CUL3	SETD2	1	1
CUL3	SMARCA4	1	1
CUL3	SMARCB1	1	1
CUL3	ZNF814	1	1
CUL3	12p-Amp	1	1
CUL3	12q-Amp	1	1
CUL3	20p-Amp	1	1
CUL3	20q-Amp	1	1
CUL3	3p-Amp	1	1
CUL3	Del_2q22.1	1	1
CUL3	Del_11q22.3	1	1
CUL3	Del_11q23.3	1	1
CUL3	Del_19p13.3	1	1
ERBB2	FGFR3	1	1
ERBB2	GXYLT1	1	1
ERBB2	KDM6A	1	1
ERBB2	KIAA0922	1	1
ERBB2	KRAS	1	1
ERBB2	KRT2	1	1
ERBB2	KRTAP4-5	1	1
ERBB2	MET	1	1
ERBB2	NEFH	1	1
ERBB2	NF2	1	1
ERBB2	PAM	1	1
ERBB2	PBRM1	1	1
ERBB2	PCF11	1	1
ERBB2	PIK3CA	1	1
ERBB2	PTEN	1	1
ERBB2	SETD2	1	1
ERBB2	SMARCA4	1	1
ERBB2	SMARCB1	1	1
ERBB2	TP53	1	1
ERBB2	12p-Amp	1	1
ERBB2	12q-Amp	1	1
ERBB2	20p-Amp	1	1
ERBB2	20q-Amp	1	1
ERBB2	2q-Amp	1	1
ERBB2	3p-Amp	1	1
ERBB2	3q-Amp	1	1
ERBB2	14q-Del	1	1
ERBB2	22q-Del	1	1
ERBB2	Amp_2q32.1	1	1
ERBB2	Amp_5q35.3	1	1
ERBB2	Del_1p36.31	1	1
ERBB2	Del_2p12	1	1
ERBB2	Del_2q22.1	1	1
ERBB2	Del_2q37.3	1	1
ERBB2	Del_3p22.1	1	1
ERBB2	Del_4q34.3	1	1
ERBB2	Del_5p15.33	1	1
ERBB2	Del_6q25.3	1	1
ERBB2	Del_9p21.3	1	1
ERBB2	Del_11q23.3	1	1
ERBB2	Del_14q11.2	1	1
ERBB2	Del_14q24.2	1	1
ERBB2	Del_16q24.2	1	1
ERBB2	Del_19p13.3	1	1
ERBB2	Del_19q13.42	1	1
ERBB2	Del_22q12.2	1	1
FGFR3	GXYLT1	1	1
FGFR3	KIAA0922	1	1
FGFR3	KRAS	1	1
FGFR3	KRT2	1	1
FGFR3	KRTAP4-5	1	1
FGFR3	MET	1	1
FGFR3	NEFH	1	1
FGFR3	NF2	1	1
FGFR3	PAM	1	1
FGFR3	PBRM1	1	1
FGFR3	PCF11	1	1
FGFR3	PIK3CA	1	1
FGFR3	PTEN	1	1
FGFR3	SETD2	1	1
FGFR3	SMARCA4	1	1
FGFR3	SMARCB1	1	1
FGFR3	ZNF814	1	1
FGFR3	12p-Amp	1	1
FGFR3	12q-Amp	1	1
FGFR3	2q-Amp	1	1
FGFR3	14q-Del	1	1
FGFR3	22q-Del	1	1
FGFR3	Amp_2q32.1	1	1
FGFR3	Amp_5q35.3	1	1
FGFR3	Del_1p36.31	1	1
FGFR3	Del_2p12	1	1
FGFR3	Del_2q22.1	1	1
FGFR3	Del_3p22.1	1	1
FGFR3	Del_4q34.3	1	1
FGFR3	Del_5p15.33	1	1
FGFR3	Del_14q11.2	1	1
FGFR3	Del_14q24.2	1	1
FGFR3	Del_16q24.2	1	1
FGFR3	Del_19p13.3	1	1
FGFR3	Del_19q13.42	1	1
FGFR3	Del_22q12.2	1	1
GXYLT1	KDM6A	1	1
GXYLT1	KIAA0922	1	1
GXYLT1	KRAS	1	1
GXYLT1	KRTAP4-5	1	1
GXYLT1	MET	1	1
GXYLT1	NEFH	1	1
GXYLT1	NF2	1	1
GXYLT1	PAM	1	1
GXYLT1	PBRM1	1	1
GXYLT1	PCF11	1	1
GXYLT1	PIK3CA	1	1
GXYLT1	PTEN	1	1
GXYLT1	SETD2	1	1
GXYLT1	SMARCA4	1	1
GXYLT1	SMARCB1	1	1
GXYLT1	TP53	1	1
GXYLT1	ZNF814	1	1
GXYLT1	14q-Del	1	1
GXYLT1	22q-Del	1	1
GXYLT1	Del_1p36.31	1	1
GXYLT1	Del_2p12	1	1
GXYLT1	Del_2q22.1	1	1
GXYLT1	Del_2q37.3	1	1
GXYLT1	Del_3p22.1	1	1
GXYLT1	Del_4q34.3	1	1
GXYLT1	Del_5p15.33	1	1
GXYLT1	Del_6q25.3	1	1
GXYLT1	Del_9p21.3	1	1
GXYLT1	Del_11q22.3	1	1
GXYLT1	Del_11q23.3	1	1
GXYLT1	Del_14q11.2	1	1
GXYLT1	Del_14q24.2	1	1
GXYLT1	Del_16q24.2	1	1
GXYLT1	Del_19p13.3	1	1
GXYLT1	Del_19q13.42	1	1
GXYLT1	Del_22q12.2	1	1
KDM6A	KIAA0922	1	1
KDM6A	KRAS	1	1
KDM6A	KRT2	1	1
KDM6A	KRTAP4-5	1	1
KDM6A	MET	1	1
KDM6A	NEFH	1	1
KDM6A	NF2	1	1
KDM6A	PAM	1	1
KDM6A	PBRM1	1	1
KDM6A	PCF11	1	1
KDM6A	PIK3CA	1	1
KDM6A	PTEN	1	1
KDM6A	SETD2	1	1
KDM6A	SMARCA4	1	1
KDM6A	SMARCB1	1	1
KDM6A	TP53	1	1
KDM6A	ZNF814	1	1
KDM6A	2q-Amp	1	1
KDM6A	14q-Del	1	1
KDM6A	22q-Del	1	1
KDM6A	Amp_2q32.1	1	1
KDM6A	Amp_5q35.3	1	1
KDM6A	Del_1p36.31	1	1
KDM6A	Del_2p12	1	1
KDM6A	Del_2q22.1	1	1
KDM6A	Del_3p22.1	1	1
KDM6A	Del_11q23.3	1	1
KDM6A	Del_14q11.2	1	1
KDM6A	Del_14q24.2	1	1
KDM6A	Del_16q24.2	1	1
KDM6A	Del_19p13.3	1	1
KDM6A	Del_19q13.42	1	1
KIAA0922	KRAS	1	1
KIAA0922	KRTAP4-5	1	1
KIAA0922	NEFH	1	1
KIAA0922	NF2	1	1
KIAA0922	PAM	1	1
KIAA0922	PBRM1	1	1
KIAA0922	PCF11	1	1
KIAA0922	PIK3CA	1	1
KIAA0922	PTEN	1	1
KIAA0922	SMARCA4	1	1
KIAA0922	SMARCB1	1	1
KIAA0922	TP53	1	1
KIAA0922	ZNF814	1	1
KIAA0922	12p-Amp	1	1
KIAA0922	12q-Amp	1	1
KIAA0922	2q-Amp	1	1
KIAA0922	3p-Amp	1	1
KIAA0922	3q-Amp	1	1
KIAA0922	14q-Del	1	1
KIAA0922	22q-Del	1	1
KIAA0922	Amp_2q32.1	1	1
KIAA0922	Amp_5q35.3	1	1
KIAA0922	Del_1p36.31	1	1
KIAA0922	Del_2p12	1	1
KIAA0922	Del_2q22.1	1	1
KIAA0922	Del_2q37.3	1	1
KIAA0922	Del_3p22.1	1	1
KIAA0922	Del_4q34.3	1	1
KIAA0922	Del_5p15.33	1	1
KIAA0922	Del_6q25.3	1	1
KIAA0922	Del_9p21.3	1	1
KIAA0922	Del_11q22.3	1	1
KIAA0922	Del_11q23.3	1	1
KIAA0922	Del_14q11.2	1	1
KIAA0922	Del_14q24.2	1	1
KIAA0922	Del_16q24.2	1	1
KIAA0922	Del_19p13.3	1	1
KIAA0922	Del_19q13.42	1	1
KIAA0922	Del_22q12.2	1	1
KRAS	KRT2	1	1
KRAS	KRTAP4-5	1	1
KRAS	MET	1	1
KRAS	NEFH	1	1
KRAS	NF2	1	1
KRAS	PAM	1	1
KRAS	PBRM1	1	1
KRAS	PCF11	1	1
KRAS	PIK3CA	1	1
KRAS	PTEN	1	1
KRAS	SETD2	1	1
KRAS	SMARCA4	1	1
KRAS	SMARCB1	1	1
KRAS	TP53	1	1
KRAS	ZNF814	1	1
KRAS	2q-Amp	1	1
KRAS	3p-Amp	1	1
KRAS	3q-Amp	1	1
KRAS	7p-Amp	1	1
KRAS	7q-Amp	1	1
KRAS	22q-Del	1	1
KRAS	Amp_2q32.1	1	1
KRAS	Amp_5q35.3	1	1
KRAS	Amp_7q31.2	1	1
KRAS	Del_1p36.31	1	1
KRAS	Del_2p12	1	1
KRAS	Del_2q22.1	1	1
KRAS	Del_2q37.3	1	1
KRAS	Del_3p22.1	1	1
KRAS	Del_4q34.3	1	1
KRAS	Del_5p15.33	1	1
KRAS	Del_6q25.3	1	1
KRAS	Del_9p21.3	1	1
KRAS	Del_11q22.3	1	1
KRAS	Del_11q23.3	1	1
KRAS	Del_16q24.2	1	1
KRAS	Del_19p13.3	1	1
KRAS	Del_19q13.42	1	1
KRAS	Del_22q12.2	1	1
KRT2	KRTAP4-5	1	1
KRT2	MET	1	1
KRT2	NEFH	1	1
KRT2	NF2	1	1
KRT2	PBRM1	1	1
KRT2	PCF11	1	1
KRT2	PIK3CA	1	1
KRT2	SETD2	1	1
KRT2	SMARCA4	1	1
KRT2	SMARCB1	1	1
KRT2	TP53	1	1
KRT2	ZNF814	1	1
KRT2	14q-Del	1	1
KRT2	22q-Del	1	1
KRT2	Amp_5q35.3	1	1
KRT2	Del_1p36.31	1	1
KRT2	Del_2p12	1	1
KRT2	Del_2q22.1	1	1
KRT2	Del_2q37.3	1	1
KRT2	Del_3p22.1	1	1
KRT2	Del_5p15.33	1	1
KRT2	Del_6q25.3	1	1
KRT2	Del_9p21.3	1	1
KRT2	Del_14q11.2	1	1
KRT2	Del_14q24.2	1	1
KRT2	Del_19p13.3	1	1
KRT2	Del_19q13.42	1	1
KRT2	Del_22q12.2	1	1
KRTAP4-5	MET	1	1
KRTAP4-5	NEFH	1	1
KRTAP4-5	NF2	1	1
KRTAP4-5	PAM	1	1
KRTAP4-5	PBRM1	1	1
KRTAP4-5	PCF11	1	1
KRTAP4-5	PTEN	1	1
KRTAP4-5	SETD2	1	1
KRTAP4-5	SMARCA4	1	1
KRTAP4-5	SMARCB1	1	1
KRTAP4-5	TP53	1	1
KRTAP4-5	ZNF814	1	1
KRTAP4-5	2q-Amp	1	1
KRTAP4-5	14q-Del	1	1
KRTAP4-5	22q-Del	1	1
KRTAP4-5	Amp_2q32.1	1	1
KRTAP4-5	Amp_5q35.3	1	1
KRTAP4-5	Del_1p36.31	1	1
KRTAP4-5	Del_2p12	1	1
KRTAP4-5	Del_2q22.1	1	1
KRTAP4-5	Del_2q37.3	1	1
KRTAP4-5	Del_3p22.1	1	1
KRTAP4-5	Del_5p15.33	1	1
KRTAP4-5	Del_6q25.3	1	1
KRTAP4-5	Del_9p21.3	1	1
KRTAP4-5	Del_11q22.3	1	1
KRTAP4-5	Del_11q23.3	1	1
KRTAP4-5	Del_14q11.2	1	1
KRTAP4-5	Del_14q24.2	1	1
KRTAP4-5	Del_19p13.3	1	1
KRTAP4-5	Del_19q13.42	1	1
KRTAP4-5	Del_22q12.2	1	1
MET	NEFH	1	1
MET	NF2	1	1
MET	PCF11	1	1
MET	PIK3CA	1	1
MET	PTEN	1	1
MET	SETD2	1	1
MET	SMARCA4	1	1
MET	SMARCB1	1	1
MET	TP53	1	1
MET	ZNF814	1	1
MET	2q-Amp	1	1
MET	Amp_2q32.1	1	1
MET	Del_2p12	1	1
MET	Del_2q22.1	1	1
MET	Del_2q37.3	1	1
MET	Del_5p15.33	1	1
MET	Del_9p21.3	1	1
MET	Del_16q24.2	1	1
MET	Del_19p13.3	1	1
MET	Del_19q13.42	1	1
NEFH	PAM	1	1
NEFH	PBRM1	1	1
NEFH	PCF11	1	1
NEFH	PIK3CA	1	1
NEFH	PTEN	1	1
NEFH	SETD2	1	1
NEFH	SMARCB1	1	1
NEFH	TP53	1	1
NEFH	ZNF814	1	1
NEFH	22q-Del	1	1
NEFH	Amp_5q35.3	1	1
NEFH	Del_2p12	1	1
NEFH	Del_2q22.1	1	1
NEFH	Del_2q37.3	1	1
NEFH	Del_3p22.1	1	1
NEFH	Del_4q34.3	1	1
NEFH	Del_5p15.33	1	1
NEFH	Del_11q22.3	1	1
NEFH	Del_11q23.3	1	1
NEFH	Del_16q24.2	1	1
NEFH	Del_19p13.3	1	1
NEFH	Del_19q13.42	1	1
NEFH	Del_22q12.2	1	1
NF2	PAM	1	1
NF2	PBRM1	1	1
NF2	PCF11	1	1
NF2	PIK3CA	1	1
NF2	PTEN	1	1
NF2	SMARCA4	1	1
NF2	TP53	1	1
NF2	ZNF814	1	1
NF2	12p-Amp	1	1
NF2	12q-Amp	1	1
NF2	2q-Amp	1	1
NF2	3p-Amp	1	1
NF2	3q-Amp	1	1
NF2	14q-Del	1	1
NF2	Amp_2q32.1	1	1
NF2	Del_2p12	1	1
NF2	Del_2q22.1	1	1
NF2	Del_4q34.3	1	1
NF2	Del_5p15.33	1	1
NF2	Del_14q11.2	1	1
NF2	Del_14q24.2	1	1
NF2	Del_16q24.2	1	1
NF2	Del_19p13.3	1	1
NF2	Del_19q13.42	1	1
PAM	PBRM1	1	1
PAM	PCF11	1	1
PAM	PIK3CA	1	1
PAM	PTEN	1	1
PAM	SETD2	1	1
PAM	SMARCA4	1	1
PAM	SMARCB1	1	1
PAM	TP53	1	1
PAM	ZNF814	1	1
PAM	22q-Del	1	1
PAM	Amp_5q35.3	1	1
PAM	Del_1p36.31	1	1
PAM	Del_2p12	1	1
PAM	Del_2q22.1	1	1
PAM	Del_2q37.3	1	1
PAM	Del_3p22.1	1	1
PAM	Del_4q34.3	1	1
PAM	Del_5p15.33	1	1
PAM	Del_6q25.3	1	1
PAM	Del_9p21.3	1	1
PAM	Del_11q22.3	1	1
PAM	Del_11q23.3	1	1
PAM	Del_16q24.2	1	1
PAM	Del_19p13.3	1	1
PAM	Del_19q13.42	1	1
PAM	Del_22q12.2	1	1
PBRM1	PTEN	1	1
PBRM1	SMARCA4	1	1
PBRM1	20p-Amp	1	1
PBRM1	20q-Amp	1	1
PBRM1	2q-Amp	1	1
PBRM1	3p-Amp	1	1
PBRM1	Amp_2q32.1	1	1
PBRM1	Del_5p15.33	1	1
PBRM1	Del_19q13.42	1	1
PCF11	PTEN	1	1
PCF11	SETD2	1	1
PCF11	SMARCA4	1	1
PCF11	TP53	1	1
PCF11	ZNF814	1	1
PCF11	2q-Amp	1	1
PCF11	22q-Del	1	1
PCF11	Amp_2q32.1	1	1
PCF11	Amp_5q35.3	1	1
PCF11	Del_1p36.31	1	1
PCF11	Del_2p12	1	1
PCF11	Del_2q22.1	1	1
PCF11	Del_2q37.3	1	1
PCF11	Del_3p22.1	1	1
PCF11	Del_5p15.33	1	1
PCF11	Del_6q25.3	1	1
PCF11	Del_9p21.3	1	1
PCF11	Del_11q22.3	1	1
PCF11	Del_11q23.3	1	1
PCF11	Del_16q24.2	1	1
PCF11	Del_19q13.42	1	1
PCF11	Del_22q12.2	1	1
PIK3CA	PTEN	1	1
PIK3CA	SMARCA4	1	1
PIK3CA	SMARCB1	1	1
PIK3CA	ZNF814	1	1
PIK3CA	2q-Amp	1	1
PIK3CA	3p-Amp	1	1
PIK3CA	3q-Amp	1	1
PIK3CA	7p-Amp	1	1
PIK3CA	7q-Amp	1	1
PIK3CA	14q-Del	1	1
PIK3CA	22q-Del	1	1
PIK3CA	Amp_2q32.1	1	1
PIK3CA	Del_2q22.1	1	1
PIK3CA	Del_2q37.3	1	1
PIK3CA	Del_5p15.33	1	1
PIK3CA	Del_6q25.3	1	1
PIK3CA	Del_9p21.3	1	1
PIK3CA	Del_11q22.3	1	1
PIK3CA	Del_11q23.3	1	1
PIK3CA	Del_14q11.2	1	1
PIK3CA	Del_14q24.2	1	1
PIK3CA	Del_19p13.3	1	1
PIK3CA	Del_19q13.42	1	1
PIK3CA	Del_22q12.2	1	1
PTEN	SETD2	1	1
PTEN	SMARCA4	1	1
PTEN	SMARCB1	1	1
PTEN	TP53	1	1
PTEN	ZNF814	1	1
PTEN	2q-Amp	1	1
PTEN	14q-Del	1	1
PTEN	22q-Del	1	1
PTEN	Amp_2q32.1	1	1
PTEN	Amp_5q35.3	1	1
PTEN	Del_1p36.31	1	1
PTEN	Del_2p12	1	1
PTEN	Del_2q22.1	1	1
PTEN	Del_2q37.3	1	1
PTEN	Del_3p22.1	1	1
PTEN	Del_4q34.3	1	1
PTEN	Del_5p15.33	1	1
PTEN	Del_6q25.3	1	1
PTEN	Del_9p21.3	1	1
PTEN	Del_11q22.3	1	1
PTEN	Del_11q23.3	1	1
PTEN	Del_14q11.2	1	1
PTEN	Del_14q24.2	1	1
PTEN	Del_16q24.2	1	1
PTEN	Del_19p13.3	1	1
PTEN	Del_19q13.42	1	1
PTEN	Del_22q12.2	1	1
SETD2	SMARCA4	1	1
SETD2	2q-Amp	1	1
SETD2	Amp_2q32.1	1	1
SETD2	Del_5p15.33	1	1
SMARCA4	SMARCB1	1	1
SMARCA4	TP53	1	1
SMARCA4	14q-Del	1	1
SMARCA4	22q-Del	1	1
SMARCA4	Amp_5q35.3	1	1
SMARCA4	Del_2p12	1	1
SMARCA4	Del_2q22.1	1	1
SMARCA4	Del_2q37.3	1	1
SMARCA4	Del_3p22.1	1	1
SMARCA4	Del_5p15.33	1	1
SMARCA4	Del_6q25.3	1	1
SMARCA4	Del_11q22.3	1	1
SMARCA4	Del_14q11.2	1	1
SMARCA4	Del_14q24.2	1	1
SMARCA4	Del_16q24.2	1	1
SMARCA4	Del_19p13.3	1	1
SMARCA4	Del_19q13.42	1	1
SMARCA4	Del_22q12.2	1	1
SMARCB1	TP53	1	1
SMARCB1	ZNF814	1	1
SMARCB1	20p-Amp	1	1
SMARCB1	20q-Amp	1	1
SMARCB1	2q-Amp	1	1
SMARCB1	Amp_2q32.1	1	1
SMARCB1	Amp_5q35.3	1	1
SMARCB1	Del_1p36.31	1	1
SMARCB1	Del_2p12	1	1
SMARCB1	Del_2q22.1	1	1
SMARCB1	Del_2q37.3	1	1
SMARCB1	Del_3p22.1	1	1
SMARCB1	Del_5p15.33	1	1
SMARCB1	Del_9p21.3	1	1
SMARCB1	Del_11q22.3	1	1
SMARCB1	Del_11q23.3	1	1
TP53	ZNF814	1	1
TP53	12p-Amp	1	1
TP53	12q-Amp	1	1
TP53	20p-Amp	1	1
TP53	20q-Amp	1	1
TP53	3p-Amp	1	1
TP53	3q-Amp	1	1
TP53	22q-Del	1	1
TP53	Del_5p15.33	1	1
TP53	Del_19p13.3	1	1
TP53	Del_19q13.42	1	1
TP53	Del_22q12.2	1	1
ZNF814	Amp_5q35.3	1	1
ZNF814	Del_2p12	1	1
ZNF814	Del_2q22.1	1	1
ZNF814	Del_2q37.3	1	1
ZNF814	Del_4q34.3	1	1
ZNF814	Del_5p15.33	1	1
ZNF814	Del_6q25.3	1	1
12p-Amp	Del_2p12	1	1
12p-Amp	Del_2q22.1	1	1
12p-Amp	Del_2q37.3	1	1
12p-Amp	Del_5p15.33	1	1
12q-Amp	Del_2p12	1	1
12q-Amp	Del_2q22.1	1	1
12q-Amp	Del_2q37.3	1	1
12q-Amp	Del_5p15.33	1	1
16p-Amp	Del_2q37.3	1	1
16q-Amp	Del_2q22.1	1	1
16q-Amp	Del_2q37.3	1	1
16q-Amp	Del_9p21.3	1	1
16q-Amp	Del_19q13.42	1	1
17p-Amp	14q-Del	1	1
17p-Amp	22q-Del	1	1
17p-Amp	Del_1p36.31	1	1
17p-Amp	Del_2p12	1	1
17p-Amp	Del_2q22.1	1	1
17p-Amp	Del_3p22.1	1	1
17p-Amp	Del_4q34.3	1	1
17p-Amp	Del_6q25.3	1	1
17p-Amp	Del_9p21.3	1	1
17p-Amp	Del_11q23.3	1	1
17p-Amp	Del_14q11.2	1	1
17p-Amp	Del_14q24.2	1	1
17p-Amp	Del_19p13.3	1	1
17p-Amp	Del_19q13.42	1	1
17p-Amp	Del_22q12.2	1	1
17q-Amp	14q-Del	1	1
17q-Amp	Del_1p36.31	1	1
17q-Amp	Del_3p22.1	1	1
17q-Amp	Del_9p21.3	1	1
17q-Amp	Del_14q11.2	1	1
17q-Amp	Del_14q24.2	1	1
17q-Amp	Del_19q13.42	1	1
20p-Amp	Del_2p12	1	1
20p-Amp	Del_2q22.1	1	1
20p-Amp	Del_5p15.33	1	1
20q-Amp	Del_2p12	1	1
20q-Amp	Del_2q22.1	1	1
20q-Amp	Del_5p15.33	1	1
2q-Amp	22q-Del	1	1
2q-Amp	Del_2q37.3	1	1
2q-Amp	Del_5p15.33	1	1
2q-Amp	Del_6q25.3	1	1
2q-Amp	Del_11q22.3	1	1
2q-Amp	Del_11q23.3	1	1
2q-Amp	Del_16q24.2	1	1
2q-Amp	Del_19p13.3	1	1
2q-Amp	Del_19q13.42	1	1
2q-Amp	Del_22q12.2	1	1
3p-Amp	14q-Del	1	1
3p-Amp	22q-Del	1	1
3p-Amp	Del_1p36.31	1	1
3p-Amp	Del_2p12	1	1
3p-Amp	Del_2q22.1	1	1
3p-Amp	Del_2q37.3	1	1
3p-Amp	Del_3p22.1	1	1
3p-Amp	Del_6q25.3	1	1
3p-Amp	Del_11q23.3	1	1
3p-Amp	Del_14q24.2	1	1
3p-Amp	Del_16q24.2	1	1
3p-Amp	Del_19p13.3	1	1
3p-Amp	Del_19q13.42	1	1
3q-Amp	22q-Del	1	1
3q-Amp	Del_2p12	1	1
3q-Amp	Del_2q22.1	1	1
3q-Amp	Del_2q37.3	1	1
3q-Amp	Del_6q25.3	1	1
3q-Amp	Del_19p13.3	1	1
3q-Amp	Del_19q13.42	1	1
7p-Amp	14q-Del	1	1
7p-Amp	22q-Del	1	1
7p-Amp	Del_1p36.31	1	1
7p-Amp	Del_2q22.1	1	1
7p-Amp	Del_2q37.3	1	1
7p-Amp	Del_4q34.3	1	1
7p-Amp	Del_6q25.3	1	1
7p-Amp	Del_9p21.3	1	1
7p-Amp	Del_14q24.2	1	1
7p-Amp	Del_19q13.42	1	1
7q-Amp	14q-Del	1	1
7q-Amp	22q-Del	1	1
7q-Amp	Del_1p36.31	1	1
7q-Amp	Del_2q22.1	1	1
7q-Amp	Del_2q37.3	1	1
7q-Amp	Del_4q34.3	1	1
7q-Amp	Del_6q25.3	1	1
7q-Amp	Del_9p21.3	1	1
7q-Amp	Del_14q24.2	1	1
7q-Amp	Del_19q13.42	1	1
14q-Del	Amp_7q31.2	1	1
22q-Del	Amp_7q31.2	1	1
Amp_2q32.1	Del_6q25.3	1	1
Amp_2q32.1	Del_11q22.3	1	1
Amp_2q32.1	Del_11q23.3	1	1
Amp_2q32.1	Del_16q24.2	1	1
Amp_2q32.1	Del_19p13.3	1	1
Amp_2q32.1	Del_19q13.42	1	1
Amp_5q35.3	Del_2q37.3	1	1
Amp_5q35.3	Del_5p15.33	1	1
Amp_5q35.3	Del_11q22.3	1	1
Amp_5q35.3	Del_11q23.3	1	1
Amp_5q35.3	Del_19p13.3	1	1
Amp_7q31.2	Del_1p36.31	1	1
Amp_7q31.2	Del_2q22.1	1	1
Amp_7q31.2	Del_2q37.3	1	1
Amp_7q31.2	Del_3p22.1	1	1
Amp_7q31.2	Del_4q34.3	1	1
Amp_7q31.2	Del_6q25.3	1	1
Amp_7q31.2	Del_9p21.3	1	1
Amp_7q31.2	Del_11q22.3	1	1
Amp_7q31.2	Del_14q24.2	1	1
Amp_7q31.2	Del_19q13.42	1	1
Amp_7q31.2	Del_22q12.2	1	1
Del_2p12	Del_5p15.33	1	1
Del_2p12	Del_16q24.2	1	1
Del_2p12	Del_19p13.3	1	1
Del_2q22.1	Del_16q24.2	1	1
Del_2q37.3	Del_14q11.2	1	1
Del_2q37.3	Del_16q24.2	1	1
Del_3p22.1	Del_5p15.33	1	1
Del_4q34.3	Del_5p15.33	1	1
Del_5p15.33	Del_19p13.3	1	1
Del_5p15.33	Del_19q13.42	1	1
14q-Del	Del_1p36.31	1.03e-13	1
14q-Del	Del_4q34.3	1.07e-05	1
12p-Amp	16q-Amp	1.08e-06	1
Del_2q22.1	Del_2q37.3	1.08e-07	1
Del_14q24.2	Del_19q13.42	1.14e-05	1
3q-Amp	Amp_2q32.1	1.15e-05	1
3p-Amp	7p-Amp	1.16e-14	1
3p-Amp	7q-Amp	1.16e-14	1
12p-Amp	17q-Amp	1.17e-09	1
16q-Amp	17p-Amp	1.19e-16	1
12p-Amp	7p-Amp	1.22e-10	1
12p-Amp	7q-Amp	1.22e-10	1
17p-Amp	7p-Amp	1.25e-33	1
17p-Amp	7q-Amp	1.25e-33	1
12p-Amp	16p-Amp	1.27e-06	1
12q-Amp	20p-Amp	1.29e-06	1
17q-Amp	20q-Amp	1.29e-11	1
17p-Amp	20q-Amp	1.32e-13	1
PBRM1	SETD2	1.35e-07	1
Del_1p36.31	Del_4q34.3	1.39e-10	1
14q-Del	22q-Del	1.3e-05	1
3p-Amp	Amp_2q32.1	1.44e-05	1
12q-Amp	7p-Amp	1.45e-11	1
12q-Amp	7q-Amp	1.45e-11	1
12q-Amp	3q-Amp	1.49e-06	1
Del_4q34.3	Del_9p21.3	1.55e-05	1
Del_4q34.3	Del_14q24.2	1.55e-05	1
Del_6q25.3	Del_9p21.3	1.56e-07	1
12q-Amp	Amp_7q31.2	1.57e-12	1
12q-Amp	17q-Amp	1.5e-10	1
12p-Amp	Amp_7q31.2	1.65e-11	1
2q-Amp	3q-Amp	1.69e-06	1
20p-Amp	Amp_7q31.2	1.71e-09	1
17q-Amp	3q-Amp	1.76e-11	1
3q-Amp	7p-Amp	1.83e-13	1
3q-Amp	7q-Amp	1.83e-13	1
Del_1p36.31	Del_6q25.3	1.87e-05	1
14q-Del	Del_22q12.2	1.88e-05	1
14q-Del	Del_14q11.2	1.88e-30	1
20p-Amp	3q-Amp	1.8e-06	1
22q-Del	Del_1p36.31	1.94e-10	1
22q-Del	Del_22q12.2	2.03e-40	1
22q-Del	Del_14q24.2	2.04e-05	1
16p-Amp	2q-Amp	2.07e-05	1
22q-Del	Del_9p21.3	2.09e-07	1
16q-Amp	17q-Amp	2.19e-15	1
16q-Amp	3q-Amp	2.21e-18	1
16p-Amp	3q-Amp	2.33e-17	1
20p-Amp	7p-Amp	2.36e-09	1
20p-Amp	7q-Amp	2.36e-09	1
16p-Amp	20p-Amp	2.3e-11	1
Del_3p22.1	Del_9p21.3	2.44e-06	1
16q-Amp	20p-Amp	2.45e-11	1
14q-Del	Del_9p21.3	2.46e-05	1
Del_1p36.31	Del_11q23.3	2.67e-07	1
22q-Del	Del_19p13.3	2.76e-05	1
2q-Amp	3p-Amp	2.79e-06	1
Del_1p36.31	Del_14q24.2	2.92e-13	1
Del_14q24.2	Del_22q12.2	2.93e-05	1
Del_11q22.3	Del_11q23.3	3.02e-19	1
7p-Amp	Amp_7q31.2	3.02e-75	1
7q-Amp	Amp_7q31.2	3.02e-75	1
Del_14q11.2	Del_14q24.2	3.08e-32	1
12p-Amp	3q-Amp	3.09e-06	1
20q-Amp	3p-Amp	3.14e-07	1
17q-Amp	3p-Amp	3.18e-11	1
16p-Amp	17q-Amp	3.18e-17	1
16p-Amp	3p-Amp	3.29e-16	1
2q-Amp	7p-Amp	3.31e-05	1
2q-Amp	7q-Amp	3.31e-05	1
Del_9p21.3	Del_22q12.2	3.33e-07	1
12q-Amp	3p-Amp	3.36e-05	1
Del_19p13.3	Del_22q12.2	3.38e-05	1
12q-Amp	16q-Amp	3.38e-07	1
7p-Amp	7q-Amp	3.43e-82	1
Del_1p36.31	Del_11q22.3	3.44e-05	1
22q-Del	Del_11q23.3	3.45e-05	1
17p-Amp	3q-Amp	3.62e-12	1
Del_9p21.3	Del_14q24.2	3.68e-05	1
12p-Amp	20q-Amp	3.7e-07	1
12q-Amp	16p-Amp	3.86e-07	1
Del_1p36.31	Del_22q12.2	3.88e-10	1
17p-Amp	17q-Amp	3e-67	1
22q-Del	Del_6q25.3	4.02e-08	1
16p-Amp	7p-Amp	4.05e-14	1
16p-Amp	7q-Amp	4.05e-14	1
Del_1p36.31	Del_19q13.42	4.1e-05	1
Del_1p36.31	Del_14q11.2	4.29e-11	1
Del_1p36.31	Del_9p21.3	4.38e-08	1
22q-Del	Del_4q34.3	4.39e-07	1
17p-Amp	Amp_7q31.2	4.48e-34	1
Del_11q23.3	Del_22q12.2	4.49e-05	1
17p-Amp	20p-Amp	4.63e-14	1
16q-Amp	3p-Amp	4.63e-17	1
16q-Amp	7p-Amp	4.87e-15	1
16q-Amp	7q-Amp	4.87e-15	1
2q-Amp	Amp_2q32.1	5.11e-23	1
12p-Amp	12q-Amp	5.14e-63	1
17q-Amp	20p-Amp	5.23e-12	1
SETD2	22q-Del	5.27e-06	1
3p-Amp	Amp_7q31.2	5.28e-14	1
2q-Amp	Amp_7q31.2	5.31e-05	1
17q-Amp	Amp_7q31.2	5.43e-30	1
20q-Amp	Amp_7q31.2	5.66e-10	1
12p-Amp	3p-Amp	5.81e-05	1
17q-Amp	2q-Amp	5.96e-05	1
Del_6q25.3	Del_22q12.2	5.99e-08	1
20q-Amp	3q-Amp	6.11e-06	1
12p-Amp	20p-Amp	6.26e-07	1
16p-Amp	Amp_7q31.2	6.27e-13	1
Del_4q34.3	Del_22q12.2	6.47e-07	1
16p-Amp	20q-Amp	6.89e-11	1
20p-Amp	3p-Amp	6.8e-08	1
17q-Amp	7p-Amp	7.03e-30	1
17q-Amp	7q-Amp	7.03e-30	1
SETD2	Del_22q12.2	7.16e-06	1
12p-Amp	17p-Amp	7.47e-11	1
Del_1p36.31	Del_3p22.1	7.58e-10	1
16q-Amp	20q-Amp	7.61e-11	1
16q-Amp	Amp_7q31.2	7.61e-14	1
Del_3p22.1	Del_4q34.3	7.65e-05	1
12q-Amp	20q-Amp	7.87e-07	1
20q-Amp	7p-Amp	8.25e-10	1
20q-Amp	7q-Amp	8.25e-10	1
14q-Del	Del_14q24.2	8.53e-36	1
16p-Amp	16q-Amp	8.76e-66	1
14q-Del	Del_19q13.42	8.93e-06	1
3p-Amp	3q-Amp	8e-38	1
20p-Amp	20q-Amp	9.27e-60	1
Del_1p36.31	Del_2q22.1	9.42e-05	1
Del_9p21.3	Del_14q11.2	9.4e-06	1
12q-Amp	17p-Amp	9.53e-12	1
17p-Amp	3p-Amp	9.54e-13	1
3q-Amp	Amp_7q31.2	9.71e-13	1
16p-Amp	17p-Amp	9.84e-16	1
