[1] "R version 2.15.3 (2013-03-01)"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  RPPA_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                              Clinical feature               
DAYS_TO_DEATH_OR_LAST_FUP     "DAYS_TO_DEATH_OR_LAST_FUP"    
YEARS_TO_BIRTH                "YEARS_TO_BIRTH"               
PATHOLOGIC_STAGE              "PATHOLOGIC_STAGE"             
PATHOLOGY_T_STAGE             "PATHOLOGY_T_STAGE"            
PATHOLOGY_N_STAGE             "PATHOLOGY_N_STAGE"            
PATHOLOGY_M_STAGE             "PATHOLOGY_M_STAGE"            
GENDER                        "GENDER"                       
KARNOFSKY_PERFORMANCE_SCORE   "KARNOFSKY_PERFORMANCE_SCORE"  
NUMBER_PACK_YEARS_SMOKED      "NUMBER_PACK_YEARS_SMOKED"     
YEAR_OF_TOBACCO_SMOKING_ONSET "YEAR_OF_TOBACCO_SMOKING_ONSET"
RACE                          "RACE"                         
ETHNICITY                     "ETHNICITY"                    
                              Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP     "Cox regression test"       "N=30"           
YEARS_TO_BIRTH                "Spearman correlation test" "N=30"           
PATHOLOGIC_STAGE              "Kruskal-Wallis test"       "N=30"           
PATHOLOGY_T_STAGE             "Spearman correlation test" "N=30"           
PATHOLOGY_N_STAGE             "Spearman correlation test" "N=30"           
PATHOLOGY_M_STAGE             "Wilcoxon test"             "N=26"           
GENDER                        "Wilcoxon test"             "N=28"           
KARNOFSKY_PERFORMANCE_SCORE   "Spearman correlation test" "N=13"           
NUMBER_PACK_YEARS_SMOKED      "Spearman correlation test" "N=0"            
YEAR_OF_TOBACCO_SMOKING_ONSET "Spearman correlation test" "N=0"            
RACE                          "Kruskal-Wallis test"       "N=0"            
ETHNICITY                     "Wilcoxon test"             "N=1"            
                              Associated with         
DAYS_TO_DEATH_OR_LAST_FUP     " "                     
YEARS_TO_BIRTH                "older"                 
PATHOLOGIC_STAGE              " "                     
PATHOLOGY_T_STAGE             "higher stage"          
PATHOLOGY_N_STAGE             "higher stage"          
PATHOLOGY_M_STAGE             "class1"                
GENDER                        "male"                  
KARNOFSKY_PERFORMANCE_SCORE   "higher score"          
NUMBER_PACK_YEARS_SMOKED      " "                     
YEAR_OF_TOBACCO_SMOKING_ONSET " "                     
RACE                          " "                     
ETHNICITY                     "not hispanic or latino"
                              &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP     "N=NA"                                                                                    
YEARS_TO_BIRTH                "N=22"                                                                                    
PATHOLOGIC_STAGE              " "                                                                                       
PATHOLOGY_T_STAGE             "N=14"                                                                                    
PATHOLOGY_N_STAGE             "N=14"                                                                                    
PATHOLOGY_M_STAGE             "N=26"                                                                                    
GENDER                        "N=28"                                                                                    
KARNOFSKY_PERFORMANCE_SCORE   "N=8"                                                                                     
NUMBER_PACK_YEARS_SMOKED      " "                                                                                       
YEAR_OF_TOBACCO_SMOKING_ONSET " "                                                                                       
RACE                          " "                                                                                       
ETHNICITY                     "N=1"                                                                                     
                              Associated with            
DAYS_TO_DEATH_OR_LAST_FUP     " "                  "N=NA"
YEARS_TO_BIRTH                "younger"            "N=8" 
PATHOLOGIC_STAGE              " "                  " "   
PATHOLOGY_T_STAGE             "lower stage"        "N=16"
PATHOLOGY_N_STAGE             "lower stage"        "N=16"
PATHOLOGY_M_STAGE             "class0"             "N=0" 
GENDER                        "female"             "N=0" 
KARNOFSKY_PERFORMANCE_SCORE   "lower score"        "N=5" 
NUMBER_PACK_YEARS_SMOKED      " "                  " "   
YEAR_OF_TOBACCO_SMOKING_ONSET " "                  " "   
RACE                          " "                  " "   
ETHNICITY                     "hispanic or latino" "N=0" 
[1] "vtyp==survival in basici table generation"
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
