
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Gistic2Report/broadinstitute.org/cancer.genome.analysis/00269/66/Gistic2Report.R")
> result <- main("-L/xchip/tcga/Tools/Nozzle/v1.current", "-g/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Gistic2Report/broadinstitute.org/cancer.genome.analysis/00269/66/geneList.txt", "-a/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/UVM-TP/22507664/amp_genes.txt", "-d/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/UVM-TP/22507664/del_genes.txt", "-A/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/UVM-TP/22507664/amp_qplot.png", "-D/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/UVM-TP/22507664/del_qplot.png", "-S/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/UVM-TP/22507664/raw_copy_number.png", "-V/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/UVM-TP/22507664/gisticVersion.txt", "-T/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/UVM-TP/22507664/arraylistfile.txt", "-b/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/UVM-TP/22507664/broad_significance_results.txt", "-I/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/UVM-TP/22507664/gisticInputs.txt")
> q(save="no")
