PARADIGM pathway analysis of mRNASeq expression data
Esophageal Carcinoma (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): PARADIGM pathway analysis of mRNASeq expression data. Broad Institute of MIT and Harvard. doi:10.7908/C1FN15KQ
- Overview
+ Introduction
- Summary

There were 42 significant pathways identified in this analysis.

Table 1.  Get Full Table Top 10 out of 131 pathways in order of significance.

Pathway.Name Avg.Num.Perturbations
FOXA2 and FOXA3 transcription factor networks 69
Ephrin A reverse signaling 51
Syndecan-1-mediated signaling events 41
Signaling events mediated by Stem cell factor receptor (c-Kit) 38
Osteopontin-mediated events 34
Signaling events mediated by the Hedgehog family 29
TCGA08_retinoblastoma 29
IL23-mediated signaling events 29
Aurora B signaling 24
Glucocorticoid receptor regulatory network 21
- Results
+ Summary Table
+ Inferred Pathway Levels Matrix
+ Methods & Data