Clustering of miR expression: consensus hierarchical
Glioblastoma Multiforme (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
Maintained by Hailei Zhang (Broad Institute)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): Clustering of miR expression: consensus hierarchical. Broad Institute of MIT and Harvard. doi:10.7908/C1GB23D7
- Overview
+ Introduction
- Summary

Median absolute deviation (MAD) was used to select 133 most variable miRs. Consensus ward linkage hierarchical clustering of 565 samples and 133 miRs identified 3 subtypes with the stability of the clustering increasing for k = 2 to k = 10.

- Results
+ miR expression patterns of molecular subtypes
+ Silhouette widths, Cophenetic Correlation Coefficients and Consensus matrix
+ Samples assignment with silhouette width
+ Marker miRs of each subtype
+ Methods & Data