GS SIZE SOURCE ES NES NOM p-val FDR q-val FWER p-val Tag % Gene % Signal FDR (median) glob.p.val BIOCARTA_RACCYCD_PATHWAY 26 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_RACCYCD_PATHWAY 0.47188 1.802 0.01144 0.35031 0.501 0.462 0.325 0.312 0.088633 0.082 PID_ILK_PATHWAY 45 http://www.broadinstitute.org/gsea/msigdb/cards/PID_ILK_PATHWAY 0.47031 1.8539 0.004124 0.32914 0.394 0.444 0.368 0.281 0 0.073 REACTOME_TRIF_MEDIATED_TLR3_SIGNALING 72 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TRIF_MEDIATED_TLR3_SIGNALING 0.50062 1.7624 0.006085 0.34949 0.589 0.264 0.218 0.207 0.11376 0.084 REACTOME_ORC1_REMOVAL_FROM_CHROMATIN 58 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ORC1_REMOVAL_FROM_CHROMATIN 0.48174 1.9004 0.01518 0.46965 0.293 0.776 0.454 0.425 0 0.107 REACTOME_ACTIVATION_OF_NF_KAPPAB_IN_B_CELLS 60 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ACTIVATION_OF_NF_KAPPAB_IN_B_CELLS 0.44365 1.9296 0 0.73321 0.226 0.667 0.454 0.365 0 0.144 REACTOME_P53_INDEPENDENT_G1_S_DNA_DAMAGE_CHECKPOINT 47 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_P53_INDEPENDENT_G1_S_DNA_DAMAGE_CHECKPOINT 0.46658 1.8887 0.0108 0.41046 0.316 0.745 0.454 0.408 0 0.096 REACTOME_CDK_MEDIATED_PHOSPHORYLATION_AND_REMOVAL_OF_CDC6 45 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CDK_MEDIATED_PHOSPHORYLATION_AND_REMOVAL_OF_CDC6 0.46488 1.7481 0.02356 0.34309 0.629 0.778 0.463 0.419 0.12405 0.079 REACTOME_REGULATION_OF_APOPTOSIS 55 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_REGULATION_OF_APOPTOSIS 0.44111 1.8709 0.01139 0.33749 0.36 0.727 0.454 0.398 0 0.075 REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_ 62 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_ 0.47086 1.7222 0.01909 0.36649 0.687 0.742 0.454 0.407 0.14563 0.086 REACTOME_P53_DEPENDENT_G1_DNA_DAMAGE_RESPONSE 52 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_P53_DEPENDENT_G1_DNA_DAMAGE_RESPONSE 0.45846 1.9024 0.01408 0.61569 0.288 0.75 0.463 0.404 0 0.135 REACTOME_ACTIVATION_OF_CHAPERONE_GENES_BY_XBP1S 44 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ACTIVATION_OF_CHAPERONE_GENES_BY_XBP1S 0.43406 1.8119 0.01907 0.39469 0.481 0.523 0.414 0.307 0 0.093 REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX 47 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX 0.46811 1.8735 0.01915 0.38706 0.352 0.745 0.454 0.408 0 0.089 REACTOME_ASSEMBLY_OF_THE_PRE_REPLICATIVE_COMPLEX 56 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ASSEMBLY_OF_THE_PRE_REPLICATIVE_COMPLEX 0.48805 1.8037 0.0131 0.38011 0.498 0.786 0.454 0.43 0 0.089 REACTOME_REGULATION_OF_MRNA_STABILITY_BY_PROTEINS_THAT_BIND_AU_RICH_ELEMENTS 80 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_REGULATION_OF_MRNA_STABILITY_BY_PROTEINS_THAT_BIND_AU_RICH_ELEMENTS 0.34193 1.7823 0.02876 0.37432 0.542 0.638 0.454 0.35 0.10291 0.083 REACTOME_NFKB_AND_MAP_KINASES_ACTIVATION_MEDIATED_BY_TLR4_SIGNALING_REPERTOIRE 70 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_NFKB_AND_MAP_KINASES_ACTIVATION_MEDIATED_BY_TLR4_SIGNALING_REPERTOIRE 0.50583 1.7657 0.006173 0.36512 0.584 0.257 0.218 0.202 0.11912 0.086 REACTOME_HIV_INFECTION 192 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_HIV_INFECTION 0.32168 1.9615 0.01575 1 0.184 0.599 0.455 0.33 0 0.181 REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS 119 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS 0.33308 1.7396 0.03612 0.34279 0.647 0.58 0.428 0.334 0.12831 0.082 REACTOME_SCF_BETA_TRCP_MEDIATED_DEGRADATION_OF_EMI1 48 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_SCF_BETA_TRCP_MEDIATED_DEGRADATION_OF_EMI1 0.44249 1.7612 0.02188 0.33057 0.593 0.708 0.454 0.388 0.11093 0.078 REACTOME_TOLL_RECEPTOR_CASCADES 113 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TOLL_RECEPTOR_CASCADES 0.54228 1.7145 0.01426 0.36718 0.704 0.354 0.225 0.276 0.15419 0.085 REACTOME_SCFSKP2_MEDIATED_DEGRADATION_OF_P27_P21 53 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_SCFSKP2_MEDIATED_DEGRADATION_OF_P27_P21 0.46022 1.7745 0.02055 0.36631 0.557 0.736 0.454 0.403 0.10369 0.085