PARADIGM pathway analysis of mRNASeq expression data
Kidney Chromophobe (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): PARADIGM pathway analysis of mRNASeq expression data. Broad Institute of MIT and Harvard. doi:10.7908/C19Z9485
- Overview
+ Introduction
- Summary

There were 15 significant pathways identified in this analysis.

Table 1.  Get Full Table Top 10 out of 131 pathways in order of significance.

Pathway.Name Avg.Num.Perturbations
Nephrin/Neph1 signaling in the kidney podocyte 36
FOXA2 and FOXA3 transcription factor networks 26
PDGFR-alpha signaling pathway 16
Signaling events mediated by the Hedgehog family 10
Glypican 1 network 9
Signaling events regulated by Ret tyrosine kinase 8
BMP receptor signaling 7
Ephrin B reverse signaling 6
Thromboxane A2 receptor signaling 5
HIF-1-alpha transcription factor network 5
- Results
+ Summary Table
+ Inferred Pathway Levels Matrix
+ Methods & Data