Clustering of mRNA expression: consensus hierarchical
Pan-kidney cohort (KICH+KIRC+KIRP) (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
Maintained by Hailei Zhang (Broad Institute)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): Clustering of mRNA expression: consensus hierarchical. Broad Institute of MIT and Harvard. doi:10.7908/C10C4V4H
- Overview
+ Introduction
- Summary

Median absolute deviation (MAD) was used to select 1500 most variable genes. Consensus ward linkage hierarchical clustering of 88 samples and 1500 genes identified 5 subtypes with the stability of the clustering increasing for k = 2 to k = 10.

- Results
+ Gene expression patterns of molecular subtypes
+ Silhouette widths, Cophenetic Correlation Coefficients and Consensus matrix
+ Samples assignment with silhouette width
+ Marker genes of each subtype
+ Methods & Data