PARADIGM pathway analysis of mRNA expression and copy number data
Kidney Renal Clear Cell Carcinoma (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): PARADIGM pathway analysis of mRNA expression and copy number data. Broad Institute of MIT and Harvard. doi:10.7908/C1K073P6
- Overview
+ Introduction
- Summary

There were 61 significant pathways identified in this analysis.

Table 1.  Get Full Table Top 10 out of 131 pathways in order of significance.

Pathway.Name Avg.Num.Perturbations
HIF-1-alpha transcription factor network 15
Endothelins 11
HIF-2-alpha transcription factor network 10
VEGFR1 specific signals 10
Syndecan-1-mediated signaling events 9
IL4-mediated signaling events 9
TCR signaling in naïve CD8+ T cells 9
Glypican 2 network 9
IL23-mediated signaling events 9
FOXA2 and FOXA3 transcription factor networks 8
- Results
+ Summary Table
+ Inferred Pathway Levels Matrix
+ Methods & Data