This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and selected clinical features.
Testing the association between copy number variation 74 arm-level events and 12 clinical features across 288 patients, 234 significant findings detected with Q value < 0.25.
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1p gain cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'GENDER'.
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1q gain cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', and 'KARNOFSKY_PERFORMANCE_SCORE'.
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2p gain cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', and 'PATHOLOGY_M_STAGE'.
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2q gain cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', and 'PATHOLOGY_M_STAGE'.
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3p gain cnv correlated to 'PATHOLOGIC_STAGE' and 'PATHOLOGY_T_STAGE'.
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3q gain cnv correlated to 'PATHOLOGIC_STAGE' and 'PATHOLOGY_M_STAGE'.
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5p gain cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', and 'KARNOFSKY_PERFORMANCE_SCORE'.
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5q gain cnv correlated to 'KARNOFSKY_PERFORMANCE_SCORE'.
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6p gain cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'PATHOLOGY_M_STAGE'.
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6q gain cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'PATHOLOGY_M_STAGE'.
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7p gain cnv correlated to 'PATHOLOGIC_STAGE', 'GENDER', and 'YEAR_OF_TOBACCO_SMOKING_ONSET'.
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7q gain cnv correlated to 'PATHOLOGIC_STAGE', 'GENDER', and 'YEAR_OF_TOBACCO_SMOKING_ONSET'.
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8p gain cnv correlated to 'Time to Death' and 'PATHOLOGY_T_STAGE'.
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8q gain cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'GENDER'.
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9p gain cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', and 'PATHOLOGY_T_STAGE'.
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10p gain cnv correlated to 'RACE'.
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10q gain cnv correlated to 'RACE'.
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11p gain cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'PATHOLOGY_M_STAGE'.
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11q gain cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', and 'GENDER'.
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12p gain cnv correlated to 'GENDER'.
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12q gain cnv correlated to 'GENDER'.
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14q gain cnv correlated to 'PATHOLOGIC_STAGE' and 'PATHOLOGY_T_STAGE'.
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16p gain cnv correlated to 'YEARS_TO_BIRTH', 'GENDER', and 'RACE'.
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16q gain cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'GENDER', and 'RACE'.
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17p gain cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'GENDER', and 'ETHNICITY'.
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17q gain cnv correlated to 'PATHOLOGIC_STAGE'.
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18q gain cnv correlated to 'KARNOFSKY_PERFORMANCE_SCORE'.
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19p gain cnv correlated to 'YEARS_TO_BIRTH'.
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19q gain cnv correlated to 'YEARS_TO_BIRTH'.
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21q gain cnv correlated to 'NUMBER_PACK_YEARS_SMOKED'.
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xp gain cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'GENDER'.
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xq gain cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'GENDER'.
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1p loss cnv correlated to 'PATHOLOGY_T_STAGE'.
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2p loss cnv correlated to 'PATHOLOGIC_STAGE' and 'PATHOLOGY_T_STAGE'.
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3p loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', and 'PATHOLOGY_T_STAGE'.
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3q loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'PATHOLOGY_N_STAGE'.
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4p loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'GENDER'.
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4q loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'GENDER'.
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5p loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'PATHOLOGY_N_STAGE'.
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5q loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'GENDER'.
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6p loss cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'KARNOFSKY_PERFORMANCE_SCORE'.
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6q loss cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'GENDER', and 'KARNOFSKY_PERFORMANCE_SCORE'.
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8p loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', and 'PATHOLOGY_M_STAGE'.
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8q loss cnv correlated to 'GENDER'.
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9p loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', and 'KARNOFSKY_PERFORMANCE_SCORE'.
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9q loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', 'KARNOFSKY_PERFORMANCE_SCORE', and 'RACE'.
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10p loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'KARNOFSKY_PERFORMANCE_SCORE'.
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10q loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'KARNOFSKY_PERFORMANCE_SCORE'.
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11p loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'PATHOLOGY_N_STAGE'.
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11q loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'KARNOFSKY_PERFORMANCE_SCORE'.
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13q loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', and 'KARNOFSKY_PERFORMANCE_SCORE'.
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14q loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', and 'KARNOFSKY_PERFORMANCE_SCORE'.
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15q loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'PATHOLOGY_N_STAGE'.
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16p loss cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', and 'GENDER'.
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16q loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'PATHOLOGY_N_STAGE'.
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17p loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'PATHOLOGY_M_STAGE'.
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18p loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'GENDER'.
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18q loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'PATHOLOGY_N_STAGE'.
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19p loss cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'PATHOLOGY_N_STAGE'.
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19q loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'PATHOLOGY_N_STAGE'.
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21q loss cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'KARNOFSKY_PERFORMANCE_SCORE'.
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22q loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'GENDER', and 'KARNOFSKY_PERFORMANCE_SCORE'.
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xp loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', and 'RACE'.
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xq loss cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', and 'RACE'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 74 arm-level events and 12 clinical features. Shown in the table are P values (Q values). Thresholded by Q value < 0.25, 234 significant findings detected.
Clinical Features |
Time to Death |
YEARS TO BIRTH |
PATHOLOGIC STAGE |
PATHOLOGY T STAGE |
PATHOLOGY N STAGE |
PATHOLOGY M STAGE |
GENDER |
KARNOFSKY PERFORMANCE SCORE |
NUMBER PACK YEARS SMOKED |
YEAR OF TOBACCO SMOKING ONSET |
RACE | ETHNICITY | ||
nCNV (%) | nWild-Type | logrank test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | |
22q loss | 60 (21%) | 228 |
0.00125 (0.0132) |
0.0636 (0.245) |
1e-05 (0.000269) |
1e-05 (0.000269) |
0.00561 (0.0415) |
0.043 (0.188) |
0.000466 (0.00636) |
0.00113 (0.0126) |
0.559 (0.898) |
0.216 (0.524) |
0.299 (0.63) |
0.707 (1.00) |
9q loss | 34 (12%) | 254 |
2.55e-05 (0.000551) |
0.416 (0.756) |
5e-05 (0.000906) |
2e-05 (0.000444) |
0.00609 (0.0436) |
0.353 (0.699) |
0.00167 (0.0161) |
0.001 (0.0114) |
0.941 (1.00) |
0.57 (0.911) |
0.0379 (0.172) |
0.371 (0.711) |
13q loss | 24 (8%) | 264 |
1.33e-07 (1.47e-05) |
0.00291 (0.0256) |
0.00023 (0.00358) |
2e-05 (0.000444) |
0.00378 (0.0311) |
0.532 (0.878) |
1.74e-05 (0.000428) |
0.064 (0.245) |
0.746 (1.00) |
0.447 (0.788) |
0.175 (0.468) |
1 (1.00) |
1q gain | 17 (6%) | 271 |
4.2e-08 (6.21e-06) |
0.654 (0.969) |
3e-05 (0.00062) |
1e-05 (0.000269) |
0.0301 (0.15) |
0.114 (0.353) |
0.0195 (0.11) |
0.0219 (0.117) |
0.236 (0.549) |
0.109 (0.347) |
1 (1.00) |
|
17p gain | 172 (60%) | 116 |
0.0579 (0.229) |
0.0535 (0.22) |
1e-05 (0.000269) |
7e-05 (0.00122) |
0.673 (0.988) |
0.504 (0.848) |
0.0139 (0.0846) |
0.321 (0.66) |
0.741 (1.00) |
0.139 (0.406) |
0.0841 (0.294) |
0.0614 (0.239) |
4p loss | 25 (9%) | 263 |
8.66e-09 (2.27e-06) |
0.00351 (0.0297) |
1e-05 (0.000269) |
1e-05 (0.000269) |
0.00106 (0.0119) |
0.576 (0.919) |
3.8e-05 (0.000767) |
0.0768 (0.275) |
0.96 (1.00) |
0.192 (0.491) |
0.173 (0.468) |
1 (1.00) |
4q loss | 26 (9%) | 262 |
7.78e-09 (2.27e-06) |
0.0203 (0.11) |
1e-05 (0.000269) |
1e-05 (0.000269) |
0.00976 (0.0646) |
0.211 (0.518) |
0.000614 (0.00798) |
0.067 (0.253) |
0.611 (0.93) |
0.282 (0.606) |
0.172 (0.468) |
1 (1.00) |
5q loss | 8 (3%) | 280 |
9.36e-08 (1.19e-05) |
0.0121 (0.076) |
0.0381 (0.173) |
0.00396 (0.0323) |
0.0257 (0.133) |
0.242 (0.552) |
0.0322 (0.158) |
1 (1.00) |
0.256 (0.571) |
|||
9p loss | 33 (11%) | 255 |
6.49e-07 (4.8e-05) |
0.294 (0.624) |
1e-05 (0.000269) |
1e-05 (0.000269) |
0.00092 (0.0111) |
0.0685 (0.254) |
0.00122 (0.0132) |
0.000832 (0.0103) |
0.388 (0.725) |
0.478 (0.814) |
0.149 (0.427) |
0.37 (0.711) |
14q loss | 47 (16%) | 241 |
0.000118 (0.00198) |
0.348 (0.693) |
0.00191 (0.0182) |
6e-05 (0.00107) |
0.00138 (0.0142) |
0.123 (0.371) |
0.00338 (0.0289) |
0.00896 (0.0617) |
0.476 (0.812) |
0.0756 (0.272) |
1 (1.00) |
0.697 (1.00) |
18p loss | 42 (15%) | 246 |
1.08e-06 (7.35e-05) |
0.073 (0.265) |
1e-05 (0.000269) |
1e-05 (0.000269) |
0.0162 (0.0967) |
0.0577 (0.229) |
0.0359 (0.17) |
0.244 (0.552) |
0.222 (0.527) |
0.0832 (0.292) |
0.464 (0.801) |
0.676 (0.988) |
xp loss | 33 (11%) | 255 |
1.09e-05 (0.000284) |
0.12 (0.368) |
1e-05 (0.000269) |
1e-05 (0.000269) |
0.0174 (0.102) |
0.211 (0.518) |
0.0919 (0.31) |
0.00532 (0.0404) |
0.568 (0.909) |
0.354 (0.699) |
0.0406 (0.181) |
0.619 (0.932) |
xq loss | 29 (10%) | 259 |
6.17e-07 (4.8e-05) |
0.0832 (0.292) |
2e-05 (0.000444) |
2e-05 (0.000444) |
0.00986 (0.0646) |
0.177 (0.468) |
0.0735 (0.265) |
0.00532 (0.0404) |
0.772 (1.00) |
0.354 (0.699) |
0.0415 (0.184) |
0.609 (0.93) |
1p gain | 10 (3%) | 278 |
9.48e-09 (2.27e-06) |
0.505 (0.848) |
0.0003 (0.00459) |
0.0004 (0.00582) |
0.00014 (0.00226) |
0.168 (0.463) |
0.0236 (0.123) |
0.117 (0.361) |
0.331 (0.671) |
1 (1.00) |
||
6p gain | 10 (3%) | 278 |
0.00158 (0.0158) |
0.21 (0.518) |
9e-05 (0.00154) |
5e-05 (0.000906) |
0.0365 (0.17) |
0.0374 (0.171) |
0.727 (1.00) |
0.871 (1.00) |
1 (1.00) |
0.895 (1.00) |
0.779 (1.00) |
1 (1.00) |
6q gain | 7 (2%) | 281 |
3.81e-08 (6.21e-06) |
0.0684 (0.254) |
0.00131 (0.0137) |
0.00095 (0.0111) |
0.0261 (0.134) |
0.0196 (0.11) |
0.385 (0.725) |
0.871 (1.00) |
0.323 (0.66) |
0.726 (1.00) |
1 (1.00) |
|
8q gain | 25 (9%) | 263 |
2.43e-06 (0.000154) |
0.808 (1.00) |
0.00017 (0.0027) |
3e-05 (0.00062) |
0.00079 (0.00988) |
0.144 (0.415) |
0.0547 (0.223) |
0.24 (0.552) |
0.551 (0.897) |
0.743 (1.00) |
0.193 (0.491) |
1 (1.00) |
5p loss | 7 (2%) | 281 |
1.02e-08 (2.27e-06) |
0.0101 (0.0648) |
0.00923 (0.0629) |
0.00095 (0.0111) |
0.0175 (0.102) |
0.242 (0.552) |
0.0815 (0.29) |
1 (1.00) |
0.218 (0.524) |
|||
10q loss | 18 (6%) | 270 |
0.00037 (0.00548) |
0.393 (0.73) |
1e-05 (0.000269) |
0.00068 (0.00863) |
0.0466 (0.199) |
0.373 (0.711) |
0.581 (0.922) |
0.0116 (0.0736) |
0.11 (0.348) |
0.151 (0.43) |
0.427 (0.767) |
1 (1.00) |
11q loss | 21 (7%) | 267 |
0.000608 (0.00798) |
0.893 (1.00) |
1e-05 (0.000269) |
1e-05 (0.000269) |
0.00125 (0.0132) |
0.177 (0.468) |
0.448 (0.788) |
0.0121 (0.076) |
0.846 (1.00) |
0.856 (1.00) |
0.153 (0.434) |
1 (1.00) |
17p loss | 13 (5%) | 275 |
3.64e-07 (3.23e-05) |
0.854 (1.00) |
0.00241 (0.0218) |
0.00153 (0.0154) |
0.047 (0.2) |
0.0595 (0.234) |
0.112 (0.349) |
0.143 (0.412) |
0.921 (1.00) |
0.418 (0.758) |
0.356 (0.7) |
1 (1.00) |
11p gain | 12 (4%) | 276 |
0.00457 (0.0362) |
0.221 (0.527) |
0.0263 (0.134) |
0.0228 (0.12) |
0.172 (0.468) |
0.0374 (0.171) |
0.312 (0.648) |
0.688 (0.998) |
0.582 (0.922) |
0.356 (0.7) |
1 (1.00) |
|
16q gain | 148 (51%) | 140 |
0.0403 (0.181) |
0.0363 (0.17) |
0.483 (0.82) |
0.222 (0.527) |
0.856 (1.00) |
0.183 (0.476) |
0.00334 (0.0288) |
0.92 (1.00) |
0.602 (0.93) |
0.167 (0.462) |
0.0128 (0.0791) |
0.241 (0.552) |
3p loss | 21 (7%) | 267 |
0.00226 (0.0209) |
0.0209 (0.113) |
5e-05 (0.000906) |
0.00014 (0.00226) |
0.255 (0.571) |
0.085 (0.294) |
1 (1.00) |
0.685 (0.998) |
0.787 (1.00) |
0.271 (0.593) |
0.605 (0.93) |
1 (1.00) |
3q loss | 6 (2%) | 282 |
0.000439 (0.00609) |
0.166 (0.462) |
0.0418 (0.185) |
0.0494 (0.207) |
0.0654 (0.248) |
0.168 (0.463) |
0.656 (0.969) |
1 (1.00) |
1 (1.00) |
|||
6q loss | 27 (9%) | 261 |
0.751 (1.00) |
0.825 (1.00) |
0.00993 (0.0646) |
0.00418 (0.0337) |
0.111 (0.349) |
0.594 (0.93) |
0.0371 (0.171) |
0.0184 (0.106) |
0.821 (1.00) |
0.929 (1.00) |
0.125 (0.376) |
0.607 (0.93) |
8p loss | 16 (6%) | 272 |
0.00198 (0.0187) |
0.195 (0.492) |
0.0357 (0.17) |
0.275 (0.597) |
0.0348 (0.168) |
0.0138 (0.0846) |
0.141 (0.408) |
0.803 (1.00) |
0.978 (1.00) |
0.0937 (0.312) |
1 (1.00) |
|
10p loss | 17 (6%) | 271 |
0.00759 (0.0526) |
0.946 (1.00) |
0.00049 (0.00659) |
0.00165 (0.0161) |
0.182 (0.476) |
0.31 (0.647) |
0.401 (0.74) |
0.0282 (0.142) |
0.11 (0.348) |
0.151 (0.43) |
0.855 (1.00) |
1 (1.00) |
11p loss | 17 (6%) | 271 |
0.000923 (0.0111) |
0.527 (0.875) |
0.0107 (0.0684) |
0.00062 (0.00798) |
0.00361 (0.03) |
0.373 (0.711) |
0.163 (0.456) |
0.102 (0.333) |
0.703 (1.00) |
1 (1.00) |
||
15q loss | 31 (11%) | 257 |
0.0152 (0.0911) |
0.0706 (0.259) |
0.00163 (0.0161) |
0.00034 (0.00512) |
0.00575 (0.0417) |
0.281 (0.606) |
0.28 (0.604) |
0.131 (0.389) |
0.387 (0.725) |
0.511 (0.853) |
1 (1.00) |
|
16q loss | 7 (2%) | 281 |
1.43e-05 (0.000363) |
0.745 (1.00) |
0.00442 (0.0354) |
0.0127 (0.0791) |
0.0652 (0.248) |
1 (1.00) |
0.385 (0.725) |
0.912 (1.00) |
0.985 (1.00) |
0.648 (0.963) |
1 (1.00) |
|
18q loss | 44 (15%) | 244 |
3.44e-07 (3.23e-05) |
0.172 (0.468) |
1e-05 (0.000269) |
1e-05 (0.000269) |
0.00097 (0.0112) |
0.0689 (0.254) |
0.136 (0.399) |
0.207 (0.513) |
0.412 (0.756) |
0.18 (0.475) |
0.141 (0.408) |
1 (1.00) |
19q loss | 15 (5%) | 273 |
0.00206 (0.0193) |
0.421 (0.76) |
4e-05 (0.000789) |
5e-05 (0.000906) |
0.0428 (0.188) |
1 (1.00) |
0.234 (0.549) |
0.131 (0.389) |
0.627 (0.938) |
0.227 (0.535) |
0.844 (1.00) |
1 (1.00) |
2p gain | 42 (15%) | 246 |
0.248 (0.559) |
0.235 (0.549) |
0.062 (0.24) |
0.291 (0.623) |
0.0314 (0.156) |
0.00302 (0.0263) |
0.455 (0.79) |
0.294 (0.624) |
0.163 (0.456) |
0.617 (0.932) |
0.953 (1.00) |
0.699 (1.00) |
2q gain | 47 (16%) | 241 |
0.27 (0.593) |
0.324 (0.661) |
0.0341 (0.165) |
0.259 (0.574) |
0.00553 (0.0413) |
0.00577 (0.0417) |
0.589 (0.929) |
0.251 (0.565) |
0.313 (0.648) |
0.954 (1.00) |
0.955 (1.00) |
1 (1.00) |
5p gain | 34 (12%) | 254 |
0.0606 (0.237) |
0.607 (0.93) |
0.0732 (0.265) |
0.0243 (0.126) |
0.183 (0.476) |
0.616 (0.932) |
1 (1.00) |
0.045 (0.193) |
0.589 (0.929) |
0.591 (0.93) |
0.442 (0.78) |
1 (1.00) |
7p gain | 171 (59%) | 117 |
0.34 (0.679) |
0.71 (1.00) |
0.00929 (0.0629) |
0.117 (0.36) |
0.462 (0.798) |
0.728 (1.00) |
0.00282 (0.025) |
0.112 (0.349) |
0.804 (1.00) |
0.0072 (0.0504) |
0.218 (0.524) |
0.547 (0.895) |
7q gain | 172 (60%) | 116 |
0.332 (0.671) |
0.615 (0.932) |
0.00674 (0.0479) |
0.0928 (0.311) |
0.507 (0.85) |
0.728 (1.00) |
0.00261 (0.0234) |
0.112 (0.349) |
0.804 (1.00) |
0.0072 (0.0504) |
0.203 (0.506) |
0.546 (0.895) |
9p gain | 3 (1%) | 285 |
0.0481 (0.204) |
0.516 (0.86) |
0.0449 (0.193) |
0.0361 (0.17) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
||||
11q gain | 10 (3%) | 278 |
0.055 (0.223) |
0.0495 (0.207) |
0.141 (0.408) |
0.124 (0.375) |
0.673 (0.988) |
0.242 (0.552) |
0.0236 (0.123) |
0.91 (1.00) |
0.582 (0.922) |
0.273 (0.597) |
0.356 (0.7) |
1 (1.00) |
16p gain | 153 (53%) | 135 |
0.341 (0.679) |
0.0169 (0.0992) |
0.834 (1.00) |
0.661 (0.975) |
0.852 (1.00) |
0.489 (0.826) |
0.00123 (0.0132) |
0.602 (0.93) |
0.896 (1.00) |
0.167 (0.462) |
0.00151 (0.0154) |
0.235 (0.549) |
xp gain | 88 (31%) | 200 |
0.258 (0.574) |
0.196 (0.493) |
0.00476 (0.0368) |
0.00472 (0.0368) |
0.705 (1.00) |
1 (1.00) |
0.0199 (0.11) |
0.192 (0.491) |
0.838 (1.00) |
0.0991 (0.325) |
0.181 (0.475) |
1 (1.00) |
xq gain | 92 (32%) | 196 |
0.194 (0.491) |
0.182 (0.476) |
0.0326 (0.159) |
0.0196 (0.11) |
0.554 (0.897) |
1 (1.00) |
0.0214 (0.115) |
0.192 (0.491) |
0.995 (1.00) |
0.0991 (0.325) |
0.224 (0.531) |
1 (1.00) |
6p loss | 21 (7%) | 267 |
0.331 (0.671) |
0.566 (0.907) |
0.00996 (0.0646) |
0.0199 (0.11) |
0.0865 (0.296) |
1 (1.00) |
0.207 (0.513) |
0.0364 (0.17) |
0.787 (1.00) |
0.754 (1.00) |
0.176 (0.468) |
1 (1.00) |
16p loss | 4 (1%) | 284 |
0.000422 (0.00595) |
0.884 (1.00) |
0.0946 (0.313) |
0.0641 (0.245) |
1 (1.00) |
0.0577 (0.229) |
1 (1.00) |
|||||
19p loss | 16 (6%) | 272 |
0.0897 (0.304) |
0.595 (0.93) |
0.00476 (0.0368) |
0.00568 (0.0417) |
0.0436 (0.19) |
1 (1.00) |
0.38 (0.72) |
0.131 (0.389) |
0.496 (0.837) |
1 (1.00) |
1 (1.00) |
|
21q loss | 43 (15%) | 245 |
0.259 (0.574) |
0.132 (0.389) |
0.00358 (0.03) |
0.00041 (0.00587) |
0.0866 (0.296) |
0.103 (0.335) |
0.0923 (0.311) |
0.00554 (0.0413) |
0.547 (0.895) |
0.362 (0.707) |
0.323 (0.66) |
1 (1.00) |
3p gain | 75 (26%) | 213 |
0.606 (0.93) |
0.768 (1.00) |
0.0185 (0.106) |
0.0145 (0.0877) |
0.488 (0.825) |
0.107 (0.345) |
0.649 (0.963) |
0.105 (0.34) |
0.732 (1.00) |
0.555 (0.897) |
0.621 (0.932) |
1 (1.00) |
3q gain | 95 (33%) | 193 |
0.938 (1.00) |
0.376 (0.715) |
0.0541 (0.222) |
0.0689 (0.254) |
0.898 (1.00) |
0.0581 (0.229) |
0.398 (0.737) |
0.298 (0.63) |
0.442 (0.78) |
0.511 (0.853) |
0.13 (0.389) |
1 (1.00) |
8p gain | 20 (7%) | 268 |
0.00241 (0.0218) |
0.816 (1.00) |
0.0673 (0.253) |
0.0165 (0.0978) |
0.0687 (0.254) |
1 (1.00) |
0.187 (0.485) |
0.803 (1.00) |
0.762 (1.00) |
0.194 (0.491) |
0.598 (0.93) |
|
14q gain | 3 (1%) | 285 |
0.391 (0.728) |
0.0351 (0.168) |
0.0201 (0.11) |
1 (1.00) |
0.171 (0.468) |
1 (1.00) |
||||||
2p loss | 5 (2%) | 283 |
0.92 (1.00) |
0.599 (0.93) |
0.0278 (0.141) |
0.0497 (0.207) |
1 (1.00) |
0.61 (0.93) |
0.624 (0.935) |
1 (1.00) |
||||
5q gain | 31 (11%) | 257 |
0.714 (1.00) |
0.433 (0.768) |
0.0847 (0.294) |
0.109 (0.347) |
0.216 (0.524) |
0.616 (0.932) |
1 (1.00) |
0.045 (0.193) |
0.589 (0.929) |
0.765 (1.00) |
0.621 (0.932) |
0.619 (0.932) |
10p gain | 8 (3%) | 280 |
0.407 (0.748) |
0.365 (0.708) |
0.244 (0.552) |
0.455 (0.79) |
0.176 (0.468) |
0.431 (0.768) |
0.214 (0.521) |
0.389 (0.725) |
0.00935 (0.0629) |
1 (1.00) |
||
10q gain | 8 (3%) | 280 |
0.407 (0.748) |
0.365 (0.708) |
0.24 (0.552) |
0.454 (0.79) |
0.175 (0.468) |
0.431 (0.768) |
0.214 (0.521) |
0.389 (0.725) |
0.00961 (0.0642) |
1 (1.00) |
||
12p gain | 112 (39%) | 176 |
0.838 (1.00) |
0.76 (1.00) |
0.293 (0.624) |
0.85 (1.00) |
0.177 (0.468) |
0.473 (0.809) |
0.0201 (0.11) |
0.415 (0.756) |
0.92 (1.00) |
0.121 (0.368) |
0.901 (1.00) |
0.373 (0.711) |
12q gain | 112 (39%) | 176 |
0.838 (1.00) |
0.76 (1.00) |
0.294 (0.624) |
0.85 (1.00) |
0.176 (0.468) |
0.473 (0.809) |
0.0201 (0.11) |
0.415 (0.756) |
0.92 (1.00) |
0.121 (0.368) |
0.902 (1.00) |
0.373 (0.711) |
17q gain | 191 (66%) | 97 |
0.694 (1.00) |
0.0862 (0.296) |
0.032 (0.158) |
0.0716 (0.262) |
0.3 (0.63) |
1 (1.00) |
0.157 (0.442) |
0.771 (1.00) |
0.615 (0.932) |
0.282 (0.606) |
0.0849 (0.294) |
0.201 (0.503) |
18q gain | 9 (3%) | 279 |
0.199 (0.5) |
0.597 (0.93) |
0.527 (0.875) |
0.432 (0.768) |
1 (1.00) |
0.453 (0.79) |
0.0286 (0.144) |
0.333 (0.673) |
1 (1.00) |
|||
19p gain | 5 (2%) | 283 |
0.558 (0.898) |
0.0529 (0.218) |
0.687 (0.998) |
0.631 (0.941) |
1 (1.00) |
1 (1.00) |
0.61 (0.93) |
0.107 (0.345) |
1 (1.00) |
|||
19q gain | 5 (2%) | 283 |
0.558 (0.898) |
0.0529 (0.218) |
0.687 (0.998) |
0.631 (0.941) |
1 (1.00) |
1 (1.00) |
0.61 (0.93) |
0.105 (0.34) |
1 (1.00) |
|||
21q gain | 19 (7%) | 269 |
0.864 (1.00) |
0.13 (0.389) |
1 (1.00) |
1 (1.00) |
0.674 (0.988) |
0.31 (0.647) |
1 (1.00) |
0.299 (0.63) |
0.058 (0.229) |
0.098 (0.324) |
0.598 (0.93) |
|
1p loss | 30 (10%) | 258 |
0.485 (0.822) |
0.461 (0.798) |
0.0832 (0.292) |
0.0386 (0.174) |
0.367 (0.708) |
1 (1.00) |
0.384 (0.725) |
0.397 (0.736) |
0.755 (1.00) |
0.474 (0.809) |
1 (1.00) |
|
8q loss | 9 (3%) | 279 |
0.366 (0.708) |
0.551 (0.897) |
0.36 (0.703) |
1 (1.00) |
0.366 (0.708) |
0.242 (0.552) |
0.0576 (0.229) |
0.262 (0.579) |
1 (1.00) |
|||
4p gain | 10 (3%) | 278 |
0.318 (0.655) |
0.0935 (0.312) |
0.077 (0.275) |
0.543 (0.893) |
0.277 (0.6) |
0.242 (0.552) |
1 (1.00) |
0.326 (0.665) |
0.871 (1.00) |
0.834 (1.00) |
0.605 (0.93) |
1 (1.00) |
4q gain | 9 (3%) | 279 |
0.986 (1.00) |
0.219 (0.524) |
0.252 (0.565) |
0.433 (0.768) |
0.177 (0.468) |
1 (1.00) |
1 (1.00) |
0.871 (1.00) |
0.388 (0.725) |
0.834 (1.00) |
0.765 (1.00) |
1 (1.00) |
13q gain | 28 (10%) | 260 |
0.452 (0.79) |
0.358 (0.702) |
0.94 (1.00) |
0.714 (1.00) |
1 (1.00) |
0.594 (0.93) |
1 (1.00) |
0.53 (0.878) |
0.931 (1.00) |
1 (1.00) |
0.845 (1.00) |
0.338 (0.679) |
15q gain | 5 (2%) | 283 |
0.996 (1.00) |
0.832 (1.00) |
0.274 (0.597) |
0.246 (0.556) |
1 (1.00) |
0.117 (0.36) |
0.42 (0.759) |
1 (1.00) |
||||
18p gain | 12 (4%) | 276 |
0.958 (1.00) |
0.806 (1.00) |
0.275 (0.597) |
0.808 (1.00) |
0.675 (0.988) |
0.431 (0.768) |
0.194 (0.491) |
0.213 (0.521) |
0.719 (1.00) |
0.195 (0.492) |
1 (1.00) |
|
20p gain | 99 (34%) | 189 |
0.957 (1.00) |
0.303 (0.634) |
0.454 (0.79) |
0.336 (0.676) |
0.454 (0.79) |
1 (1.00) |
1 (1.00) |
0.91 (1.00) |
0.244 (0.552) |
0.787 (1.00) |
0.434 (0.768) |
0.552 (0.897) |
20q gain | 101 (35%) | 187 |
0.768 (1.00) |
0.318 (0.655) |
0.54 (0.89) |
0.415 (0.756) |
0.317 (0.655) |
1 (1.00) |
0.889 (1.00) |
0.91 (1.00) |
0.34 (0.679) |
0.642 (0.955) |
0.231 (0.544) |
0.55 (0.897) |
22q gain | 5 (2%) | 283 |
0.265 (0.584) |
0.472 (0.809) |
0.14 (0.408) |
0.0884 (0.301) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.218 (0.524) |
||||
1q loss | 21 (7%) | 267 |
0.779 (1.00) |
0.968 (1.00) |
0.466 (0.803) |
0.832 (1.00) |
0.559 (0.898) |
0.532 (0.878) |
0.207 (0.513) |
0.678 (0.99) |
0.418 (0.758) |
1 (1.00) |
||
2q loss | 3 (1%) | 285 |
0.425 (0.766) |
0.155 (0.44) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
P value = 9.48e-09 (logrank test), Q value = 2.3e-06
Table S1. Gene #1: '1p gain' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
1P GAIN MUTATED | 10 | 6 | 2.0 - 58.2 (14.9) |
1P GAIN WILD-TYPE | 275 | 38 | 0.1 - 194.8 (25.6) |
Figure S1. Get High-res Image Gene #1: '1p gain' versus Clinical Feature #1: 'Time to Death'
![](D1V1.png)
P value = 3e-04 (Fisher's exact test), Q value = 0.0046
Table S2. Gene #1: '1p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
1P GAIN MUTATED | 1 | 0 | 6 | 2 |
1P GAIN WILD-TYPE | 170 | 21 | 46 | 13 |
Figure S2. Get High-res Image Gene #1: '1p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D1V3.png)
P value = 4e-04 (Fisher's exact test), Q value = 0.0058
Table S3. Gene #1: '1p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
1P GAIN MUTATED | 2 | 0 | 8 |
1P GAIN WILD-TYPE | 189 | 33 | 54 |
Figure S3. Get High-res Image Gene #1: '1p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D1V4.png)
P value = 0.00014 (Fisher's exact test), Q value = 0.0023
Table S4. Gene #1: '1p gain' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
1P GAIN MUTATED | 0 | 5 | 2 |
1P GAIN WILD-TYPE | 49 | 19 | 2 |
Figure S4. Get High-res Image Gene #1: '1p gain' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D1V5.png)
P value = 0.0236 (Fisher's exact test), Q value = 0.12
Table S5. Gene #1: '1p gain' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
1P GAIN MUTATED | 6 | 4 |
1P GAIN WILD-TYPE | 70 | 208 |
Figure S5. Get High-res Image Gene #1: '1p gain' versus Clinical Feature #7: 'GENDER'
![](D1V7.png)
P value = 4.2e-08 (logrank test), Q value = 6.2e-06
Table S6. Gene #2: '1q gain' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
1Q GAIN MUTATED | 17 | 8 | 0.9 - 59.0 (16.9) |
1Q GAIN WILD-TYPE | 268 | 36 | 0.1 - 194.8 (25.7) |
Figure S6. Get High-res Image Gene #2: '1q gain' versus Clinical Feature #1: 'Time to Death'
![](D2V1.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00062
Table S7. Gene #2: '1q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
1Q GAIN MUTATED | 3 | 0 | 10 | 3 |
1Q GAIN WILD-TYPE | 168 | 21 | 42 | 12 |
Figure S7. Get High-res Image Gene #2: '1q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D2V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S8. Gene #2: '1q gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
1Q GAIN MUTATED | 4 | 0 | 13 |
1Q GAIN WILD-TYPE | 187 | 33 | 49 |
Figure S8. Get High-res Image Gene #2: '1q gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D2V4.png)
P value = 0.0301 (Fisher's exact test), Q value = 0.15
Table S9. Gene #2: '1q gain' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
1Q GAIN MUTATED | 4 | 6 | 2 |
1Q GAIN WILD-TYPE | 45 | 18 | 2 |
Figure S9. Get High-res Image Gene #2: '1q gain' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D2V5.png)
P value = 0.0195 (Fisher's exact test), Q value = 0.11
Table S10. Gene #2: '1q gain' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
1Q GAIN MUTATED | 9 | 8 |
1Q GAIN WILD-TYPE | 67 | 204 |
Figure S10. Get High-res Image Gene #2: '1q gain' versus Clinical Feature #7: 'GENDER'
![](D2V7.png)
P value = 0.0219 (Wilcoxon-test), Q value = 0.12
Table S11. Gene #2: '1q gain' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
1Q GAIN MUTATED | 4 | 45.0 (52.0) |
1Q GAIN WILD-TYPE | 72 | 89.9 (17.1) |
Figure S11. Get High-res Image Gene #2: '1q gain' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D2V8.png)
P value = 0.062 (Fisher's exact test), Q value = 0.24
Table S12. Gene #3: '2p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
2P GAIN MUTATED | 24 | 4 | 6 | 6 |
2P GAIN WILD-TYPE | 147 | 17 | 46 | 9 |
Figure S12. Get High-res Image Gene #3: '2p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D3V3.png)
P value = 0.0314 (Fisher's exact test), Q value = 0.16
Table S13. Gene #3: '2p gain' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
2P GAIN MUTATED | 5 | 7 | 2 |
2P GAIN WILD-TYPE | 44 | 17 | 2 |
Figure S13. Get High-res Image Gene #3: '2p gain' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D3V5.png)
P value = 0.00302 (Fisher's exact test), Q value = 0.026
Table S14. Gene #3: '2p gain' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 94 | 9 |
2P GAIN MUTATED | 10 | 5 |
2P GAIN WILD-TYPE | 84 | 4 |
Figure S14. Get High-res Image Gene #3: '2p gain' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
![](D3V6.png)
P value = 0.0341 (Fisher's exact test), Q value = 0.17
Table S15. Gene #4: '2q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
2Q GAIN MUTATED | 27 | 4 | 7 | 7 |
2Q GAIN WILD-TYPE | 144 | 17 | 45 | 8 |
Figure S15. Get High-res Image Gene #4: '2q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D4V3.png)
P value = 0.00553 (Fisher's exact test), Q value = 0.041
Table S16. Gene #4: '2q gain' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
2Q GAIN MUTATED | 6 | 8 | 3 |
2Q GAIN WILD-TYPE | 43 | 16 | 1 |
Figure S16. Get High-res Image Gene #4: '2q gain' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D4V5.png)
P value = 0.00577 (Fisher's exact test), Q value = 0.042
Table S17. Gene #4: '2q gain' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 94 | 9 |
2Q GAIN MUTATED | 12 | 5 |
2Q GAIN WILD-TYPE | 82 | 4 |
Figure S17. Get High-res Image Gene #4: '2q gain' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
![](D4V6.png)
P value = 0.0185 (Fisher's exact test), Q value = 0.11
Table S18. Gene #5: '3p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
3P GAIN MUTATED | 50 | 8 | 6 | 2 |
3P GAIN WILD-TYPE | 121 | 13 | 46 | 13 |
Figure S18. Get High-res Image Gene #5: '3p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D5V3.png)
P value = 0.0145 (Fisher's exact test), Q value = 0.088
Table S19. Gene #5: '3p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
3P GAIN MUTATED | 54 | 12 | 8 |
3P GAIN WILD-TYPE | 137 | 21 | 54 |
Figure S19. Get High-res Image Gene #5: '3p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D5V4.png)
P value = 0.0541 (Fisher's exact test), Q value = 0.22
Table S20. Gene #6: '3q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
3Q GAIN MUTATED | 58 | 11 | 13 | 2 |
3Q GAIN WILD-TYPE | 113 | 10 | 39 | 13 |
Figure S20. Get High-res Image Gene #6: '3q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D6V3.png)
P value = 0.0581 (Fisher's exact test), Q value = 0.23
Table S21. Gene #6: '3q gain' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 94 | 9 |
3Q GAIN MUTATED | 29 | 0 |
3Q GAIN WILD-TYPE | 65 | 9 |
Figure S21. Get High-res Image Gene #6: '3q gain' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
![](D6V6.png)
P value = 0.0606 (logrank test), Q value = 0.24
Table S22. Gene #9: '5p gain' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
5P GAIN MUTATED | 33 | 7 | 0.2 - 99.1 (18.4) |
5P GAIN WILD-TYPE | 252 | 37 | 0.1 - 194.8 (26.0) |
Figure S22. Get High-res Image Gene #9: '5p gain' versus Clinical Feature #1: 'Time to Death'
![](D9V1.png)
P value = 0.0243 (Fisher's exact test), Q value = 0.13
Table S23. Gene #9: '5p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
5P GAIN MUTATED | 16 | 5 | 13 |
5P GAIN WILD-TYPE | 175 | 28 | 49 |
Figure S23. Get High-res Image Gene #9: '5p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D9V4.png)
P value = 0.045 (Wilcoxon-test), Q value = 0.19
Table S24. Gene #9: '5p gain' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
5P GAIN MUTATED | 13 | 76.2 (34.5) |
5P GAIN WILD-TYPE | 63 | 89.8 (18.0) |
Figure S24. Get High-res Image Gene #9: '5p gain' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D9V8.png)
P value = 0.045 (Wilcoxon-test), Q value = 0.19
Table S25. Gene #10: '5q gain' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
5Q GAIN MUTATED | 13 | 76.2 (34.5) |
5Q GAIN WILD-TYPE | 63 | 89.8 (18.0) |
Figure S25. Get High-res Image Gene #10: '5q gain' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D10V8.png)
P value = 0.00158 (logrank test), Q value = 0.016
Table S26. Gene #11: '6p gain' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
6P GAIN MUTATED | 10 | 5 | 6.6 - 93.3 (13.8) |
6P GAIN WILD-TYPE | 275 | 39 | 0.1 - 194.8 (25.6) |
Figure S26. Get High-res Image Gene #11: '6p gain' versus Clinical Feature #1: 'Time to Death'
![](D11V1.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.0015
Table S27. Gene #11: '6p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
6P GAIN MUTATED | 1 | 0 | 6 | 3 |
6P GAIN WILD-TYPE | 170 | 21 | 46 | 12 |
Figure S27. Get High-res Image Gene #11: '6p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D11V3.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00091
Table S28. Gene #11: '6p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
6P GAIN MUTATED | 1 | 1 | 8 |
6P GAIN WILD-TYPE | 190 | 32 | 54 |
Figure S28. Get High-res Image Gene #11: '6p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D11V4.png)
P value = 0.0365 (Fisher's exact test), Q value = 0.17
Table S29. Gene #11: '6p gain' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
6P GAIN MUTATED | 1 | 5 | 0 |
6P GAIN WILD-TYPE | 48 | 19 | 4 |
Figure S29. Get High-res Image Gene #11: '6p gain' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D11V5.png)
P value = 0.0374 (Fisher's exact test), Q value = 0.17
Table S30. Gene #11: '6p gain' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 94 | 9 |
6P GAIN MUTATED | 2 | 2 |
6P GAIN WILD-TYPE | 92 | 7 |
Figure S30. Get High-res Image Gene #11: '6p gain' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
![](D11V6.png)
P value = 3.81e-08 (logrank test), Q value = 6.2e-06
Table S31. Gene #12: '6q gain' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
6Q GAIN MUTATED | 7 | 4 | 6.6 - 49.2 (12.8) |
6Q GAIN WILD-TYPE | 278 | 40 | 0.1 - 194.8 (25.6) |
Figure S31. Get High-res Image Gene #12: '6q gain' versus Clinical Feature #1: 'Time to Death'
![](D12V1.png)
P value = 0.00131 (Fisher's exact test), Q value = 0.014
Table S32. Gene #12: '6q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
6Q GAIN MUTATED | 1 | 0 | 3 | 3 |
6Q GAIN WILD-TYPE | 170 | 21 | 49 | 12 |
Figure S32. Get High-res Image Gene #12: '6q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D12V3.png)
P value = 0.00095 (Fisher's exact test), Q value = 0.011
Table S33. Gene #12: '6q gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
6Q GAIN MUTATED | 1 | 0 | 6 |
6Q GAIN WILD-TYPE | 190 | 33 | 56 |
Figure S33. Get High-res Image Gene #12: '6q gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D12V4.png)
P value = 0.0261 (Fisher's exact test), Q value = 0.13
Table S34. Gene #12: '6q gain' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
6Q GAIN MUTATED | 0 | 4 | 0 |
6Q GAIN WILD-TYPE | 49 | 20 | 4 |
Figure S34. Get High-res Image Gene #12: '6q gain' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D12V5.png)
P value = 0.0196 (Fisher's exact test), Q value = 0.11
Table S35. Gene #12: '6q gain' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 94 | 9 |
6Q GAIN MUTATED | 1 | 2 |
6Q GAIN WILD-TYPE | 93 | 7 |
Figure S35. Get High-res Image Gene #12: '6q gain' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
![](D12V6.png)
P value = 0.00929 (Fisher's exact test), Q value = 0.063
Table S36. Gene #13: '7p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
7P GAIN MUTATED | 111 | 11 | 21 | 11 |
7P GAIN WILD-TYPE | 60 | 10 | 31 | 4 |
Figure S36. Get High-res Image Gene #13: '7p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D13V3.png)
P value = 0.00282 (Fisher's exact test), Q value = 0.025
Table S37. Gene #13: '7p gain' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
7P GAIN MUTATED | 34 | 137 |
7P GAIN WILD-TYPE | 42 | 75 |
Figure S37. Get High-res Image Gene #13: '7p gain' versus Clinical Feature #7: 'GENDER'
![](D13V7.png)
P value = 0.0072 (Wilcoxon-test), Q value = 0.05
Table S38. Gene #13: '7p gain' versus Clinical Feature #10: 'YEAR_OF_TOBACCO_SMOKING_ONSET'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 54 | 1972.5 (15.7) |
7P GAIN MUTATED | 31 | 1967.6 (14.7) |
7P GAIN WILD-TYPE | 23 | 1979.0 (14.8) |
Figure S38. Get High-res Image Gene #13: '7p gain' versus Clinical Feature #10: 'YEAR_OF_TOBACCO_SMOKING_ONSET'
![](D13V10.png)
P value = 0.00674 (Fisher's exact test), Q value = 0.048
Table S39. Gene #14: '7q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
7Q GAIN MUTATED | 112 | 11 | 21 | 11 |
7Q GAIN WILD-TYPE | 59 | 10 | 31 | 4 |
Figure S39. Get High-res Image Gene #14: '7q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D14V3.png)
P value = 0.00261 (Fisher's exact test), Q value = 0.023
Table S40. Gene #14: '7q gain' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
7Q GAIN MUTATED | 34 | 138 |
7Q GAIN WILD-TYPE | 42 | 74 |
Figure S40. Get High-res Image Gene #14: '7q gain' versus Clinical Feature #7: 'GENDER'
![](D14V7.png)
P value = 0.0072 (Wilcoxon-test), Q value = 0.05
Table S41. Gene #14: '7q gain' versus Clinical Feature #10: 'YEAR_OF_TOBACCO_SMOKING_ONSET'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 54 | 1972.5 (15.7) |
7Q GAIN MUTATED | 31 | 1967.6 (14.7) |
7Q GAIN WILD-TYPE | 23 | 1979.0 (14.8) |
Figure S41. Get High-res Image Gene #14: '7q gain' versus Clinical Feature #10: 'YEAR_OF_TOBACCO_SMOKING_ONSET'
![](D14V10.png)
P value = 0.00241 (logrank test), Q value = 0.022
Table S42. Gene #15: '8p gain' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
8P GAIN MUTATED | 20 | 6 | 0.2 - 59.0 (21.2) |
8P GAIN WILD-TYPE | 265 | 38 | 0.1 - 194.8 (25.6) |
Figure S42. Get High-res Image Gene #15: '8p gain' versus Clinical Feature #1: 'Time to Death'
![](D15V1.png)
P value = 0.0165 (Fisher's exact test), Q value = 0.098
Table S43. Gene #15: '8p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
8P GAIN MUTATED | 8 | 3 | 9 |
8P GAIN WILD-TYPE | 183 | 30 | 53 |
Figure S43. Get High-res Image Gene #15: '8p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D15V4.png)
P value = 2.43e-06 (logrank test), Q value = 0.00015
Table S44. Gene #16: '8q gain' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
8Q GAIN MUTATED | 25 | 9 | 0.2 - 59.0 (16.0) |
8Q GAIN WILD-TYPE | 260 | 35 | 0.1 - 194.8 (25.9) |
Figure S44. Get High-res Image Gene #16: '8q gain' versus Clinical Feature #1: 'Time to Death'
![](D16V1.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.0027
Table S45. Gene #16: '8q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
8Q GAIN MUTATED | 7 | 4 | 8 | 5 |
8Q GAIN WILD-TYPE | 164 | 17 | 44 | 10 |
Figure S45. Get High-res Image Gene #16: '8q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D16V3.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00062
Table S46. Gene #16: '8q gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
8Q GAIN MUTATED | 7 | 4 | 14 |
8Q GAIN WILD-TYPE | 184 | 29 | 48 |
Figure S46. Get High-res Image Gene #16: '8q gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D16V4.png)
P value = 0.00079 (Fisher's exact test), Q value = 0.0099
Table S47. Gene #16: '8q gain' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
8Q GAIN MUTATED | 3 | 7 | 3 |
8Q GAIN WILD-TYPE | 46 | 17 | 1 |
Figure S47. Get High-res Image Gene #16: '8q gain' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D16V5.png)
P value = 0.0547 (Fisher's exact test), Q value = 0.22
Table S48. Gene #16: '8q gain' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
8Q GAIN MUTATED | 11 | 14 |
8Q GAIN WILD-TYPE | 65 | 198 |
Figure S48. Get High-res Image Gene #16: '8q gain' versus Clinical Feature #7: 'GENDER'
![](D16V7.png)
P value = 0.0481 (logrank test), Q value = 0.2
Table S49. Gene #17: '9p gain' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
9P GAIN MUTATED | 3 | 1 | 3.7 - 34.5 (11.3) |
9P GAIN WILD-TYPE | 282 | 43 | 0.1 - 194.8 (25.3) |
Figure S49. Get High-res Image Gene #17: '9p gain' versus Clinical Feature #1: 'Time to Death'
![](D17V1.png)
P value = 0.0449 (Fisher's exact test), Q value = 0.19
Table S50. Gene #17: '9p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
9P GAIN MUTATED | 0 | 1 | 2 | 0 |
9P GAIN WILD-TYPE | 171 | 20 | 50 | 15 |
Figure S50. Get High-res Image Gene #17: '9p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D17V3.png)
P value = 0.0361 (Fisher's exact test), Q value = 0.17
Table S51. Gene #17: '9p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
9P GAIN MUTATED | 0 | 1 | 2 |
9P GAIN WILD-TYPE | 191 | 32 | 60 |
Figure S51. Get High-res Image Gene #17: '9p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D17V4.png)
P value = 0.00935 (Fisher's exact test), Q value = 0.063
Table S52. Gene #18: '10p gain' versus Clinical Feature #11: 'RACE'
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 6 | 61 | 204 |
10P GAIN MUTATED | 0 | 2 | 2 | 3 |
10P GAIN WILD-TYPE | 2 | 4 | 59 | 201 |
Figure S52. Get High-res Image Gene #18: '10p gain' versus Clinical Feature #11: 'RACE'
![](D18V11.png)
P value = 0.00961 (Fisher's exact test), Q value = 0.064
Table S53. Gene #19: '10q gain' versus Clinical Feature #11: 'RACE'
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 6 | 61 | 204 |
10Q GAIN MUTATED | 0 | 2 | 2 | 3 |
10Q GAIN WILD-TYPE | 2 | 4 | 59 | 201 |
Figure S53. Get High-res Image Gene #19: '10q gain' versus Clinical Feature #11: 'RACE'
![](D19V11.png)
P value = 0.00457 (logrank test), Q value = 0.036
Table S54. Gene #20: '11p gain' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
11P GAIN MUTATED | 11 | 4 | 0.5 - 99.1 (11.9) |
11P GAIN WILD-TYPE | 274 | 40 | 0.1 - 194.8 (25.7) |
Figure S54. Get High-res Image Gene #20: '11p gain' versus Clinical Feature #1: 'Time to Death'
![](D20V1.png)
P value = 0.0263 (Fisher's exact test), Q value = 0.13
Table S55. Gene #20: '11p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
11P GAIN MUTATED | 4 | 0 | 5 | 2 |
11P GAIN WILD-TYPE | 167 | 21 | 47 | 13 |
Figure S55. Get High-res Image Gene #20: '11p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D20V3.png)
P value = 0.0228 (Fisher's exact test), Q value = 0.12
Table S56. Gene #20: '11p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
11P GAIN MUTATED | 4 | 2 | 6 |
11P GAIN WILD-TYPE | 187 | 31 | 56 |
Figure S56. Get High-res Image Gene #20: '11p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D20V4.png)
P value = 0.0374 (Fisher's exact test), Q value = 0.17
Table S57. Gene #20: '11p gain' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 94 | 9 |
11P GAIN MUTATED | 2 | 2 |
11P GAIN WILD-TYPE | 92 | 7 |
Figure S57. Get High-res Image Gene #20: '11p gain' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
![](D20V6.png)
P value = 0.055 (logrank test), Q value = 0.22
Table S58. Gene #21: '11q gain' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
11Q GAIN MUTATED | 10 | 3 | 0.5 - 99.1 (12.5) |
11Q GAIN WILD-TYPE | 275 | 41 | 0.1 - 194.8 (25.6) |
Figure S58. Get High-res Image Gene #21: '11q gain' versus Clinical Feature #1: 'Time to Death'
![](D21V1.png)
P value = 0.0495 (Wilcoxon-test), Q value = 0.21
Table S59. Gene #21: '11q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 283 | 61.5 (12.1) |
11Q GAIN MUTATED | 10 | 53.6 (14.8) |
11Q GAIN WILD-TYPE | 273 | 61.8 (11.9) |
Figure S59. Get High-res Image Gene #21: '11q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D21V2.png)
P value = 0.0236 (Fisher's exact test), Q value = 0.12
Table S60. Gene #21: '11q gain' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
11Q GAIN MUTATED | 6 | 4 |
11Q GAIN WILD-TYPE | 70 | 208 |
Figure S60. Get High-res Image Gene #21: '11q gain' versus Clinical Feature #7: 'GENDER'
![](D21V7.png)
P value = 0.0201 (Fisher's exact test), Q value = 0.11
Table S61. Gene #22: '12p gain' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
12P GAIN MUTATED | 21 | 91 |
12P GAIN WILD-TYPE | 55 | 121 |
Figure S61. Get High-res Image Gene #22: '12p gain' versus Clinical Feature #7: 'GENDER'
![](D22V7.png)
P value = 0.0201 (Fisher's exact test), Q value = 0.11
Table S62. Gene #23: '12q gain' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
12Q GAIN MUTATED | 21 | 91 |
12Q GAIN WILD-TYPE | 55 | 121 |
Figure S62. Get High-res Image Gene #23: '12q gain' versus Clinical Feature #7: 'GENDER'
![](D23V7.png)
P value = 0.0351 (Fisher's exact test), Q value = 0.17
Table S63. Gene #25: '14q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
14Q GAIN MUTATED | 0 | 0 | 3 | 0 |
14Q GAIN WILD-TYPE | 171 | 21 | 49 | 15 |
Figure S63. Get High-res Image Gene #25: '14q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D25V3.png)
P value = 0.0201 (Fisher's exact test), Q value = 0.11
Table S64. Gene #25: '14q gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
14Q GAIN MUTATED | 0 | 0 | 3 |
14Q GAIN WILD-TYPE | 191 | 33 | 59 |
Figure S64. Get High-res Image Gene #25: '14q gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D25V4.png)
P value = 0.0169 (Wilcoxon-test), Q value = 0.099
Table S65. Gene #27: '16p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 283 | 61.5 (12.1) |
16P GAIN MUTATED | 151 | 63.0 (11.6) |
16P GAIN WILD-TYPE | 132 | 59.7 (12.4) |
Figure S65. Get High-res Image Gene #27: '16p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D27V2.png)
P value = 0.00123 (Fisher's exact test), Q value = 0.013
Table S66. Gene #27: '16p gain' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
16P GAIN MUTATED | 28 | 125 |
16P GAIN WILD-TYPE | 48 | 87 |
Figure S66. Get High-res Image Gene #27: '16p gain' versus Clinical Feature #7: 'GENDER'
![](D27V7.png)
P value = 0.00151 (Fisher's exact test), Q value = 0.015
Table S67. Gene #27: '16p gain' versus Clinical Feature #11: 'RACE'
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 6 | 61 | 204 |
16P GAIN MUTATED | 2 | 3 | 21 | 120 |
16P GAIN WILD-TYPE | 0 | 3 | 40 | 84 |
Figure S67. Get High-res Image Gene #27: '16p gain' versus Clinical Feature #11: 'RACE'
![](D27V11.png)
P value = 0.0403 (logrank test), Q value = 0.18
Table S68. Gene #28: '16q gain' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
16Q GAIN MUTATED | 145 | 17 | 0.1 - 194.8 (25.2) |
16Q GAIN WILD-TYPE | 140 | 27 | 0.1 - 103.6 (25.6) |
Figure S68. Get High-res Image Gene #28: '16q gain' versus Clinical Feature #1: 'Time to Death'
![](D28V1.png)
P value = 0.0363 (Wilcoxon-test), Q value = 0.17
Table S69. Gene #28: '16q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 283 | 61.5 (12.1) |
16Q GAIN MUTATED | 146 | 62.9 (11.6) |
16Q GAIN WILD-TYPE | 137 | 59.9 (12.5) |
Figure S69. Get High-res Image Gene #28: '16q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D28V2.png)
P value = 0.00334 (Fisher's exact test), Q value = 0.029
Table S70. Gene #28: '16q gain' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
16Q GAIN MUTATED | 28 | 120 |
16Q GAIN WILD-TYPE | 48 | 92 |
Figure S70. Get High-res Image Gene #28: '16q gain' versus Clinical Feature #7: 'GENDER'
![](D28V7.png)
P value = 0.0128 (Fisher's exact test), Q value = 0.079
Table S71. Gene #28: '16q gain' versus Clinical Feature #11: 'RACE'
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 6 | 61 | 204 |
16Q GAIN MUTATED | 2 | 3 | 22 | 115 |
16Q GAIN WILD-TYPE | 0 | 3 | 39 | 89 |
Figure S71. Get High-res Image Gene #28: '16q gain' versus Clinical Feature #11: 'RACE'
![](D28V11.png)
P value = 0.0579 (logrank test), Q value = 0.23
Table S72. Gene #29: '17p gain' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
17P GAIN MUTATED | 169 | 20 | 0.1 - 194.8 (25.3) |
17P GAIN WILD-TYPE | 116 | 24 | 0.1 - 123.6 (25.6) |
Figure S72. Get High-res Image Gene #29: '17p gain' versus Clinical Feature #1: 'Time to Death'
![](D29V1.png)
P value = 0.0535 (Wilcoxon-test), Q value = 0.22
Table S73. Gene #29: '17p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 283 | 61.5 (12.1) |
17P GAIN MUTATED | 169 | 60.4 (11.8) |
17P GAIN WILD-TYPE | 114 | 63.1 (12.5) |
Figure S73. Get High-res Image Gene #29: '17p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D29V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S74. Gene #29: '17p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
17P GAIN MUTATED | 117 | 15 | 17 | 6 |
17P GAIN WILD-TYPE | 54 | 6 | 35 | 9 |
Figure S74. Get High-res Image Gene #29: '17p gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D29V3.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.0012
Table S75. Gene #29: '17p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
17P GAIN MUTATED | 127 | 22 | 22 |
17P GAIN WILD-TYPE | 64 | 11 | 40 |
Figure S75. Get High-res Image Gene #29: '17p gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D29V4.png)
P value = 0.0139 (Fisher's exact test), Q value = 0.085
Table S76. Gene #29: '17p gain' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
17P GAIN MUTATED | 36 | 136 |
17P GAIN WILD-TYPE | 40 | 76 |
Figure S76. Get High-res Image Gene #29: '17p gain' versus Clinical Feature #7: 'GENDER'
![](D29V7.png)
P value = 0.0614 (Fisher's exact test), Q value = 0.24
Table S77. Gene #29: '17p gain' versus Clinical Feature #12: 'ETHNICITY'
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 12 | 240 |
17P GAIN MUTATED | 4 | 154 |
17P GAIN WILD-TYPE | 8 | 86 |
Figure S77. Get High-res Image Gene #29: '17p gain' versus Clinical Feature #12: 'ETHNICITY'
![](D29V12.png)
P value = 0.032 (Fisher's exact test), Q value = 0.16
Table S78. Gene #30: '17q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
17Q GAIN MUTATED | 121 | 16 | 26 | 9 |
17Q GAIN WILD-TYPE | 50 | 5 | 26 | 6 |
Figure S78. Get High-res Image Gene #30: '17q gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D30V3.png)
P value = 0.0286 (Wilcoxon-test), Q value = 0.14
Table S79. Gene #32: '18q gain' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
18Q GAIN MUTATED | 5 | 100.0 (0.0) |
18Q GAIN WILD-TYPE | 71 | 86.6 (22.5) |
Figure S79. Get High-res Image Gene #32: '18q gain' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D32V8.png)
P value = 0.0529 (Wilcoxon-test), Q value = 0.22
Table S80. Gene #33: '19p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 283 | 61.5 (12.1) |
19P GAIN MUTATED | 5 | 48.0 (15.2) |
19P GAIN WILD-TYPE | 278 | 61.7 (11.9) |
Figure S80. Get High-res Image Gene #33: '19p gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D33V2.png)
P value = 0.0529 (Wilcoxon-test), Q value = 0.22
Table S81. Gene #34: '19q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 283 | 61.5 (12.1) |
19Q GAIN MUTATED | 5 | 48.0 (15.2) |
19Q GAIN WILD-TYPE | 278 | 61.7 (11.9) |
Figure S81. Get High-res Image Gene #34: '19q gain' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D34V2.png)
P value = 0.058 (Wilcoxon-test), Q value = 0.23
Table S82. Gene #37: '21q gain' versus Clinical Feature #9: 'NUMBER_PACK_YEARS_SMOKED'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 32.3 (27.3) |
21Q GAIN MUTATED | 3 | 12.3 (4.6) |
21Q GAIN WILD-TYPE | 71 | 33.2 (27.5) |
Figure S82. Get High-res Image Gene #37: '21q gain' versus Clinical Feature #9: 'NUMBER_PACK_YEARS_SMOKED'
![](D37V9.png)
P value = 0.00476 (Fisher's exact test), Q value = 0.037
Table S83. Gene #39: 'xp gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
XP GAIN MUTATED | 62 | 7 | 6 | 4 |
XP GAIN WILD-TYPE | 109 | 14 | 46 | 11 |
Figure S83. Get High-res Image Gene #39: 'xp gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D39V3.png)
P value = 0.00472 (Fisher's exact test), Q value = 0.037
Table S84. Gene #39: 'xp gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
XP GAIN MUTATED | 68 | 11 | 9 |
XP GAIN WILD-TYPE | 123 | 22 | 53 |
Figure S84. Get High-res Image Gene #39: 'xp gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D39V4.png)
P value = 0.0199 (Fisher's exact test), Q value = 0.11
Table S85. Gene #39: 'xp gain' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
XP GAIN MUTATED | 15 | 73 |
XP GAIN WILD-TYPE | 61 | 139 |
Figure S85. Get High-res Image Gene #39: 'xp gain' versus Clinical Feature #7: 'GENDER'
![](D39V7.png)
P value = 0.0326 (Fisher's exact test), Q value = 0.16
Table S86. Gene #40: 'xq gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
XQ GAIN MUTATED | 62 | 7 | 8 | 4 |
XQ GAIN WILD-TYPE | 109 | 14 | 44 | 11 |
Figure S86. Get High-res Image Gene #40: 'xq gain' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D40V3.png)
P value = 0.0196 (Fisher's exact test), Q value = 0.11
Table S87. Gene #40: 'xq gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
XQ GAIN MUTATED | 69 | 12 | 11 |
XQ GAIN WILD-TYPE | 122 | 21 | 51 |
Figure S87. Get High-res Image Gene #40: 'xq gain' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D40V4.png)
P value = 0.0214 (Fisher's exact test), Q value = 0.11
Table S88. Gene #40: 'xq gain' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
XQ GAIN MUTATED | 16 | 76 |
XQ GAIN WILD-TYPE | 60 | 136 |
Figure S88. Get High-res Image Gene #40: 'xq gain' versus Clinical Feature #7: 'GENDER'
![](D40V7.png)
P value = 0.0386 (Fisher's exact test), Q value = 0.17
Table S89. Gene #41: '1p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
1P LOSS MUTATED | 14 | 5 | 11 |
1P LOSS WILD-TYPE | 177 | 28 | 51 |
Figure S89. Get High-res Image Gene #41: '1p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D41V4.png)
P value = 0.0278 (Fisher's exact test), Q value = 0.14
Table S90. Gene #43: '2p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
2P LOSS MUTATED | 0 | 0 | 2 | 1 |
2P LOSS WILD-TYPE | 171 | 21 | 50 | 14 |
Figure S90. Get High-res Image Gene #43: '2p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D43V3.png)
P value = 0.0497 (Fisher's exact test), Q value = 0.21
Table S91. Gene #43: '2p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
2P LOSS MUTATED | 1 | 1 | 3 |
2P LOSS WILD-TYPE | 190 | 32 | 59 |
Figure S91. Get High-res Image Gene #43: '2p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D43V4.png)
P value = 0.00226 (logrank test), Q value = 0.021
Table S92. Gene #45: '3p loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
3P LOSS MUTATED | 21 | 7 | 2.0 - 86.3 (14.1) |
3P LOSS WILD-TYPE | 264 | 37 | 0.1 - 194.8 (25.7) |
Figure S92. Get High-res Image Gene #45: '3p loss' versus Clinical Feature #1: 'Time to Death'
![](D45V1.png)
P value = 0.0209 (Wilcoxon-test), Q value = 0.11
Table S93. Gene #45: '3p loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 283 | 61.5 (12.1) |
3P LOSS MUTATED | 20 | 54.6 (12.7) |
3P LOSS WILD-TYPE | 263 | 62.0 (11.9) |
Figure S93. Get High-res Image Gene #45: '3p loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D45V2.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00091
Table S94. Gene #45: '3p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
3P LOSS MUTATED | 5 | 1 | 12 | 3 |
3P LOSS WILD-TYPE | 166 | 20 | 40 | 12 |
Figure S94. Get High-res Image Gene #45: '3p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D45V3.png)
P value = 0.00014 (Fisher's exact test), Q value = 0.0023
Table S95. Gene #45: '3p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
3P LOSS MUTATED | 6 | 3 | 12 |
3P LOSS WILD-TYPE | 185 | 30 | 50 |
Figure S95. Get High-res Image Gene #45: '3p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D45V4.png)
P value = 0.000439 (logrank test), Q value = 0.0061
Table S96. Gene #46: '3q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
3Q LOSS MUTATED | 6 | 3 | 3.7 - 54.6 (15.3) |
3Q LOSS WILD-TYPE | 279 | 41 | 0.1 - 194.8 (25.6) |
Figure S96. Get High-res Image Gene #46: '3q loss' versus Clinical Feature #1: 'Time to Death'
![](D46V1.png)
P value = 0.0418 (Fisher's exact test), Q value = 0.18
Table S97. Gene #46: '3q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
3Q LOSS MUTATED | 2 | 0 | 2 | 2 |
3Q LOSS WILD-TYPE | 169 | 21 | 50 | 13 |
Figure S97. Get High-res Image Gene #46: '3q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D46V3.png)
P value = 0.0494 (Fisher's exact test), Q value = 0.21
Table S98. Gene #46: '3q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
3Q LOSS MUTATED | 2 | 0 | 4 |
3Q LOSS WILD-TYPE | 189 | 33 | 58 |
Figure S98. Get High-res Image Gene #46: '3q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D46V4.png)
P value = 0.0654 (Fisher's exact test), Q value = 0.25
Table S99. Gene #46: '3q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
3Q LOSS MUTATED | 1 | 2 | 1 |
3Q LOSS WILD-TYPE | 48 | 22 | 3 |
Figure S99. Get High-res Image Gene #46: '3q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D46V5.png)
P value = 8.66e-09 (logrank test), Q value = 2.3e-06
Table S100. Gene #47: '4p loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
4P LOSS MUTATED | 25 | 12 | 2.0 - 79.9 (19.4) |
4P LOSS WILD-TYPE | 260 | 32 | 0.1 - 194.8 (25.9) |
Figure S100. Get High-res Image Gene #47: '4p loss' versus Clinical Feature #1: 'Time to Death'
![](D47V1.png)
P value = 0.00351 (Wilcoxon-test), Q value = 0.03
Table S101. Gene #47: '4p loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 283 | 61.5 (12.1) |
4P LOSS MUTATED | 24 | 53.1 (15.1) |
4P LOSS WILD-TYPE | 259 | 62.2 (11.5) |
Figure S101. Get High-res Image Gene #47: '4p loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D47V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S102. Gene #47: '4p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
4P LOSS MUTATED | 4 | 1 | 15 | 2 |
4P LOSS WILD-TYPE | 167 | 20 | 37 | 13 |
Figure S102. Get High-res Image Gene #47: '4p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D47V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S103. Gene #47: '4p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
4P LOSS MUTATED | 5 | 3 | 17 |
4P LOSS WILD-TYPE | 186 | 30 | 45 |
Figure S103. Get High-res Image Gene #47: '4p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D47V4.png)
P value = 0.00106 (Fisher's exact test), Q value = 0.012
Table S104. Gene #47: '4p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
4P LOSS MUTATED | 3 | 10 | 1 |
4P LOSS WILD-TYPE | 46 | 14 | 3 |
Figure S104. Get High-res Image Gene #47: '4p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D47V5.png)
P value = 3.8e-05 (Fisher's exact test), Q value = 0.00077
Table S105. Gene #47: '4p loss' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
4P LOSS MUTATED | 16 | 9 |
4P LOSS WILD-TYPE | 60 | 203 |
Figure S105. Get High-res Image Gene #47: '4p loss' versus Clinical Feature #7: 'GENDER'
![](D47V7.png)
P value = 7.78e-09 (logrank test), Q value = 2.3e-06
Table S106. Gene #48: '4q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
4Q LOSS MUTATED | 26 | 12 | 2.0 - 79.9 (18.6) |
4Q LOSS WILD-TYPE | 259 | 32 | 0.1 - 194.8 (26.0) |
Figure S106. Get High-res Image Gene #48: '4q loss' versus Clinical Feature #1: 'Time to Death'
![](D48V1.png)
P value = 0.0203 (Wilcoxon-test), Q value = 0.11
Table S107. Gene #48: '4q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 283 | 61.5 (12.1) |
4Q LOSS MUTATED | 25 | 55.0 (14.7) |
4Q LOSS WILD-TYPE | 258 | 62.1 (11.7) |
Figure S107. Get High-res Image Gene #48: '4q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D48V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S108. Gene #48: '4q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
4Q LOSS MUTATED | 5 | 1 | 14 | 3 |
4Q LOSS WILD-TYPE | 166 | 20 | 38 | 12 |
Figure S108. Get High-res Image Gene #48: '4q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D48V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S109. Gene #48: '4q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
4Q LOSS MUTATED | 6 | 4 | 16 |
4Q LOSS WILD-TYPE | 185 | 29 | 46 |
Figure S109. Get High-res Image Gene #48: '4q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D48V4.png)
P value = 0.00976 (Fisher's exact test), Q value = 0.065
Table S110. Gene #48: '4q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
4Q LOSS MUTATED | 4 | 9 | 1 |
4Q LOSS WILD-TYPE | 45 | 15 | 3 |
Figure S110. Get High-res Image Gene #48: '4q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D48V5.png)
P value = 0.000614 (Fisher's exact test), Q value = 0.008
Table S111. Gene #48: '4q loss' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
4Q LOSS MUTATED | 15 | 11 |
4Q LOSS WILD-TYPE | 61 | 201 |
Figure S111. Get High-res Image Gene #48: '4q loss' versus Clinical Feature #7: 'GENDER'
![](D48V7.png)
P value = 1.02e-08 (logrank test), Q value = 2.3e-06
Table S112. Gene #49: '5p loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
5P LOSS MUTATED | 7 | 4 | 2.8 - 30.5 (11.1) |
5P LOSS WILD-TYPE | 278 | 40 | 0.1 - 194.8 (25.6) |
Figure S112. Get High-res Image Gene #49: '5p loss' versus Clinical Feature #1: 'Time to Death'
![](D49V1.png)
P value = 0.0101 (Wilcoxon-test), Q value = 0.065
Table S113. Gene #49: '5p loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 283 | 61.5 (12.1) |
5P LOSS MUTATED | 7 | 47.4 (13.1) |
5P LOSS WILD-TYPE | 276 | 61.8 (11.9) |
Figure S113. Get High-res Image Gene #49: '5p loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D49V2.png)
P value = 0.00923 (Fisher's exact test), Q value = 0.063
Table S114. Gene #49: '5p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
5P LOSS MUTATED | 1 | 0 | 3 | 2 |
5P LOSS WILD-TYPE | 170 | 21 | 49 | 13 |
Figure S114. Get High-res Image Gene #49: '5p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D49V3.png)
P value = 0.00095 (Fisher's exact test), Q value = 0.011
Table S115. Gene #49: '5p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
5P LOSS MUTATED | 1 | 0 | 6 |
5P LOSS WILD-TYPE | 190 | 33 | 56 |
Figure S115. Get High-res Image Gene #49: '5p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D49V4.png)
P value = 0.0175 (Fisher's exact test), Q value = 0.1
Table S116. Gene #49: '5p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
5P LOSS MUTATED | 0 | 3 | 1 |
5P LOSS WILD-TYPE | 49 | 21 | 3 |
Figure S116. Get High-res Image Gene #49: '5p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D49V5.png)
P value = 9.36e-08 (logrank test), Q value = 1.2e-05
Table S117. Gene #50: '5q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
5Q LOSS MUTATED | 8 | 4 | 2.8 - 30.5 (14.4) |
5Q LOSS WILD-TYPE | 277 | 40 | 0.1 - 194.8 (25.6) |
Figure S117. Get High-res Image Gene #50: '5q loss' versus Clinical Feature #1: 'Time to Death'
![](D50V1.png)
P value = 0.0121 (Wilcoxon-test), Q value = 0.076
Table S118. Gene #50: '5q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 283 | 61.5 (12.1) |
5Q LOSS MUTATED | 8 | 46.9 (17.0) |
5Q LOSS WILD-TYPE | 275 | 61.9 (11.7) |
Figure S118. Get High-res Image Gene #50: '5q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D50V2.png)
P value = 0.0381 (Fisher's exact test), Q value = 0.17
Table S119. Gene #50: '5q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
5Q LOSS MUTATED | 2 | 0 | 4 | 1 |
5Q LOSS WILD-TYPE | 169 | 21 | 48 | 14 |
Figure S119. Get High-res Image Gene #50: '5q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D50V3.png)
P value = 0.00396 (Fisher's exact test), Q value = 0.032
Table S120. Gene #50: '5q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
5Q LOSS MUTATED | 2 | 0 | 6 |
5Q LOSS WILD-TYPE | 189 | 33 | 56 |
Figure S120. Get High-res Image Gene #50: '5q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D50V4.png)
P value = 0.0257 (Fisher's exact test), Q value = 0.13
Table S121. Gene #50: '5q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
5Q LOSS MUTATED | 0 | 4 | 0 |
5Q LOSS WILD-TYPE | 49 | 20 | 4 |
Figure S121. Get High-res Image Gene #50: '5q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D50V5.png)
P value = 0.0322 (Fisher's exact test), Q value = 0.16
Table S122. Gene #50: '5q loss' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
5Q LOSS MUTATED | 5 | 3 |
5Q LOSS WILD-TYPE | 71 | 209 |
Figure S122. Get High-res Image Gene #50: '5q loss' versus Clinical Feature #7: 'GENDER'
![](D50V7.png)
P value = 0.00996 (Fisher's exact test), Q value = 0.065
Table S123. Gene #51: '6p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
6P LOSS MUTATED | 8 | 0 | 9 | 2 |
6P LOSS WILD-TYPE | 163 | 21 | 43 | 13 |
Figure S123. Get High-res Image Gene #51: '6p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D51V3.png)
P value = 0.0199 (Fisher's exact test), Q value = 0.11
Table S124. Gene #51: '6p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
6P LOSS MUTATED | 10 | 1 | 10 |
6P LOSS WILD-TYPE | 181 | 32 | 52 |
Figure S124. Get High-res Image Gene #51: '6p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D51V4.png)
P value = 0.0364 (Wilcoxon-test), Q value = 0.17
Table S125. Gene #51: '6p loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
6P LOSS MUTATED | 10 | 70.0 (37.1) |
6P LOSS WILD-TYPE | 66 | 90.2 (17.8) |
Figure S125. Get High-res Image Gene #51: '6p loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D51V8.png)
P value = 0.00993 (Fisher's exact test), Q value = 0.065
Table S126. Gene #52: '6q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
6Q LOSS MUTATED | 12 | 0 | 11 | 2 |
6Q LOSS WILD-TYPE | 159 | 21 | 41 | 13 |
Figure S126. Get High-res Image Gene #52: '6q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D52V3.png)
P value = 0.00418 (Fisher's exact test), Q value = 0.034
Table S127. Gene #52: '6q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
6Q LOSS MUTATED | 13 | 1 | 13 |
6Q LOSS WILD-TYPE | 178 | 32 | 49 |
Figure S127. Get High-res Image Gene #52: '6q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D52V4.png)
P value = 0.0371 (Fisher's exact test), Q value = 0.17
Table S128. Gene #52: '6q loss' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
6Q LOSS MUTATED | 12 | 15 |
6Q LOSS WILD-TYPE | 64 | 197 |
Figure S128. Get High-res Image Gene #52: '6q loss' versus Clinical Feature #7: 'GENDER'
![](D52V7.png)
P value = 0.0184 (Wilcoxon-test), Q value = 0.11
Table S129. Gene #52: '6q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
6Q LOSS MUTATED | 10 | 69.0 (36.7) |
6Q LOSS WILD-TYPE | 66 | 90.3 (17.7) |
Figure S129. Get High-res Image Gene #52: '6q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D52V8.png)
P value = 0.00198 (logrank test), Q value = 0.019
Table S130. Gene #53: '8p loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
8P LOSS MUTATED | 16 | 6 | 1.2 - 67.2 (20.5) |
8P LOSS WILD-TYPE | 269 | 38 | 0.1 - 194.8 (25.4) |
Figure S130. Get High-res Image Gene #53: '8p loss' versus Clinical Feature #1: 'Time to Death'
![](D53V1.png)
P value = 0.0357 (Fisher's exact test), Q value = 0.17
Table S131. Gene #53: '8p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
8P LOSS MUTATED | 6 | 2 | 2 | 3 |
8P LOSS WILD-TYPE | 165 | 19 | 50 | 12 |
Figure S131. Get High-res Image Gene #53: '8p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D53V3.png)
P value = 0.0348 (Fisher's exact test), Q value = 0.17
Table S132. Gene #53: '8p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
8P LOSS MUTATED | 1 | 5 | 0 |
8P LOSS WILD-TYPE | 48 | 19 | 4 |
Figure S132. Get High-res Image Gene #53: '8p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D53V5.png)
P value = 0.0138 (Fisher's exact test), Q value = 0.085
Table S133. Gene #53: '8p loss' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 94 | 9 |
8P LOSS MUTATED | 4 | 3 |
8P LOSS WILD-TYPE | 90 | 6 |
Figure S133. Get High-res Image Gene #53: '8p loss' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
![](D53V6.png)
P value = 0.0576 (Fisher's exact test), Q value = 0.23
Table S134. Gene #54: '8q loss' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
8Q LOSS MUTATED | 5 | 4 |
8Q LOSS WILD-TYPE | 71 | 208 |
Figure S134. Get High-res Image Gene #54: '8q loss' versus Clinical Feature #7: 'GENDER'
![](D54V7.png)
P value = 6.49e-07 (logrank test), Q value = 4.8e-05
Table S135. Gene #55: '9p loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
9P LOSS MUTATED | 33 | 14 | 2.0 - 93.3 (19.4) |
9P LOSS WILD-TYPE | 252 | 30 | 0.1 - 194.8 (26.0) |
Figure S135. Get High-res Image Gene #55: '9p loss' versus Clinical Feature #1: 'Time to Death'
![](D55V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S136. Gene #55: '9p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
9P LOSS MUTATED | 9 | 0 | 15 | 6 |
9P LOSS WILD-TYPE | 162 | 21 | 37 | 9 |
Figure S136. Get High-res Image Gene #55: '9p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D55V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S137. Gene #55: '9p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
9P LOSS MUTATED | 10 | 3 | 20 |
9P LOSS WILD-TYPE | 181 | 30 | 42 |
Figure S137. Get High-res Image Gene #55: '9p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D55V4.png)
P value = 0.00092 (Fisher's exact test), Q value = 0.011
Table S138. Gene #55: '9p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
9P LOSS MUTATED | 6 | 10 | 3 |
9P LOSS WILD-TYPE | 43 | 14 | 1 |
Figure S138. Get High-res Image Gene #55: '9p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D55V5.png)
P value = 0.00122 (Fisher's exact test), Q value = 0.013
Table S139. Gene #55: '9p loss' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
9P LOSS MUTATED | 17 | 16 |
9P LOSS WILD-TYPE | 59 | 196 |
Figure S139. Get High-res Image Gene #55: '9p loss' versus Clinical Feature #7: 'GENDER'
![](D55V7.png)
P value = 0.000832 (Wilcoxon-test), Q value = 0.01
Table S140. Gene #55: '9p loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
9P LOSS MUTATED | 13 | 66.9 (36.6) |
9P LOSS WILD-TYPE | 63 | 91.7 (14.9) |
Figure S140. Get High-res Image Gene #55: '9p loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D55V8.png)
P value = 2.55e-05 (logrank test), Q value = 0.00055
Table S141. Gene #56: '9q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
9Q LOSS MUTATED | 34 | 12 | 2.0 - 93.3 (19.0) |
9Q LOSS WILD-TYPE | 251 | 32 | 0.1 - 194.8 (26.0) |
Figure S141. Get High-res Image Gene #56: '9q loss' versus Clinical Feature #1: 'Time to Death'
![](D56V1.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00091
Table S142. Gene #56: '9q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
9Q LOSS MUTATED | 11 | 1 | 15 | 5 |
9Q LOSS WILD-TYPE | 160 | 20 | 37 | 10 |
Figure S142. Get High-res Image Gene #56: '9q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D56V3.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00044
Table S143. Gene #56: '9q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
9Q LOSS MUTATED | 12 | 1 | 21 |
9Q LOSS WILD-TYPE | 179 | 32 | 41 |
Figure S143. Get High-res Image Gene #56: '9q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D56V4.png)
P value = 0.00609 (Fisher's exact test), Q value = 0.044
Table S144. Gene #56: '9q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
9Q LOSS MUTATED | 6 | 8 | 3 |
9Q LOSS WILD-TYPE | 43 | 16 | 1 |
Figure S144. Get High-res Image Gene #56: '9q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D56V5.png)
P value = 0.00167 (Fisher's exact test), Q value = 0.016
Table S145. Gene #56: '9q loss' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
9Q LOSS MUTATED | 17 | 17 |
9Q LOSS WILD-TYPE | 59 | 195 |
Figure S145. Get High-res Image Gene #56: '9q loss' versus Clinical Feature #7: 'GENDER'
![](D56V7.png)
P value = 0.001 (Wilcoxon-test), Q value = 0.011
Table S146. Gene #56: '9q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
9Q LOSS MUTATED | 11 | 62.7 (38.5) |
9Q LOSS WILD-TYPE | 65 | 91.7 (14.6) |
Figure S146. Get High-res Image Gene #56: '9q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D56V8.png)
P value = 0.0379 (Fisher's exact test), Q value = 0.17
Table S147. Gene #56: '9q loss' versus Clinical Feature #11: 'RACE'
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 6 | 61 | 204 |
9Q LOSS MUTATED | 0 | 3 | 4 | 26 |
9Q LOSS WILD-TYPE | 2 | 3 | 57 | 178 |
Figure S147. Get High-res Image Gene #56: '9q loss' versus Clinical Feature #11: 'RACE'
![](D56V11.png)
P value = 0.00759 (logrank test), Q value = 0.053
Table S148. Gene #57: '10p loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
10P LOSS MUTATED | 17 | 6 | 3.7 - 91.7 (20.5) |
10P LOSS WILD-TYPE | 268 | 38 | 0.1 - 194.8 (25.8) |
Figure S148. Get High-res Image Gene #57: '10p loss' versus Clinical Feature #1: 'Time to Death'
![](D57V1.png)
P value = 0.00049 (Fisher's exact test), Q value = 0.0066
Table S149. Gene #57: '10p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
10P LOSS MUTATED | 4 | 0 | 9 | 2 |
10P LOSS WILD-TYPE | 167 | 21 | 43 | 13 |
Figure S149. Get High-res Image Gene #57: '10p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D57V3.png)
P value = 0.00165 (Fisher's exact test), Q value = 0.016
Table S150. Gene #57: '10p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
10P LOSS MUTATED | 6 | 1 | 10 |
10P LOSS WILD-TYPE | 185 | 32 | 52 |
Figure S150. Get High-res Image Gene #57: '10p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D57V4.png)
P value = 0.0282 (Wilcoxon-test), Q value = 0.14
Table S151. Gene #57: '10p loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
10P LOSS MUTATED | 7 | 45.7 (48.3) |
10P LOSS WILD-TYPE | 69 | 91.7 (11.5) |
Figure S151. Get High-res Image Gene #57: '10p loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D57V8.png)
P value = 0.00037 (logrank test), Q value = 0.0055
Table S152. Gene #58: '10q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
10Q LOSS MUTATED | 18 | 8 | 3.7 - 91.7 (19.9) |
10Q LOSS WILD-TYPE | 267 | 36 | 0.1 - 194.8 (25.6) |
Figure S152. Get High-res Image Gene #58: '10q loss' versus Clinical Feature #1: 'Time to Death'
![](D58V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S153. Gene #58: '10q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
10Q LOSS MUTATED | 4 | 0 | 11 | 2 |
10Q LOSS WILD-TYPE | 167 | 21 | 41 | 13 |
Figure S153. Get High-res Image Gene #58: '10q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D58V3.png)
P value = 0.00068 (Fisher's exact test), Q value = 0.0086
Table S154. Gene #58: '10q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
10Q LOSS MUTATED | 6 | 1 | 11 |
10Q LOSS WILD-TYPE | 185 | 32 | 51 |
Figure S154. Get High-res Image Gene #58: '10q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D58V4.png)
P value = 0.0466 (Fisher's exact test), Q value = 0.2
Table S155. Gene #58: '10q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
10Q LOSS MUTATED | 3 | 6 | 1 |
10Q LOSS WILD-TYPE | 46 | 18 | 3 |
Figure S155. Get High-res Image Gene #58: '10q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D58V5.png)
P value = 0.0116 (Wilcoxon-test), Q value = 0.074
Table S156. Gene #58: '10q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
10Q LOSS MUTATED | 8 | 50.0 (46.3) |
10Q LOSS WILD-TYPE | 68 | 91.9 (11.5) |
Figure S156. Get High-res Image Gene #58: '10q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D58V8.png)
P value = 0.000923 (logrank test), Q value = 0.011
Table S157. Gene #59: '11p loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
11P LOSS MUTATED | 17 | 6 | 2.0 - 58.2 (19.4) |
11P LOSS WILD-TYPE | 268 | 38 | 0.1 - 194.8 (25.6) |
Figure S157. Get High-res Image Gene #59: '11p loss' versus Clinical Feature #1: 'Time to Death'
![](D59V1.png)
P value = 0.0107 (Fisher's exact test), Q value = 0.068
Table S158. Gene #59: '11p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
11P LOSS MUTATED | 5 | 2 | 5 | 3 |
11P LOSS WILD-TYPE | 166 | 19 | 47 | 12 |
Figure S158. Get High-res Image Gene #59: '11p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D59V3.png)
P value = 0.00062 (Fisher's exact test), Q value = 0.008
Table S159. Gene #59: '11p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
11P LOSS MUTATED | 5 | 2 | 10 |
11P LOSS WILD-TYPE | 186 | 31 | 52 |
Figure S159. Get High-res Image Gene #59: '11p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D59V4.png)
P value = 0.00361 (Fisher's exact test), Q value = 0.03
Table S160. Gene #59: '11p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
11P LOSS MUTATED | 1 | 4 | 2 |
11P LOSS WILD-TYPE | 48 | 20 | 2 |
Figure S160. Get High-res Image Gene #59: '11p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D59V5.png)
P value = 0.000608 (logrank test), Q value = 0.008
Table S161. Gene #60: '11q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
11Q LOSS MUTATED | 21 | 8 | 0.4 - 123.6 (18.6) |
11Q LOSS WILD-TYPE | 264 | 36 | 0.1 - 194.8 (25.8) |
Figure S161. Get High-res Image Gene #60: '11q loss' versus Clinical Feature #1: 'Time to Death'
![](D60V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S162. Gene #60: '11q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
11Q LOSS MUTATED | 3 | 1 | 11 | 5 |
11Q LOSS WILD-TYPE | 168 | 20 | 41 | 10 |
Figure S162. Get High-res Image Gene #60: '11q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D60V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S163. Gene #60: '11q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
11Q LOSS MUTATED | 3 | 2 | 16 |
11Q LOSS WILD-TYPE | 188 | 31 | 46 |
Figure S163. Get High-res Image Gene #60: '11q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D60V4.png)
P value = 0.00125 (Fisher's exact test), Q value = 0.013
Table S164. Gene #60: '11q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
11Q LOSS MUTATED | 3 | 6 | 3 |
11Q LOSS WILD-TYPE | 46 | 18 | 1 |
Figure S164. Get High-res Image Gene #60: '11q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D60V5.png)
P value = 0.0121 (Wilcoxon-test), Q value = 0.076
Table S165. Gene #60: '11q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
11Q LOSS MUTATED | 6 | 66.7 (36.1) |
11Q LOSS WILD-TYPE | 70 | 89.3 (19.8) |
Figure S165. Get High-res Image Gene #60: '11q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D60V8.png)
P value = 1.33e-07 (logrank test), Q value = 1.5e-05
Table S166. Gene #61: '13q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
13Q LOSS MUTATED | 24 | 10 | 0.2 - 86.8 (17.5) |
13Q LOSS WILD-TYPE | 261 | 34 | 0.1 - 194.8 (26.0) |
Figure S166. Get High-res Image Gene #61: '13q loss' versus Clinical Feature #1: 'Time to Death'
![](D61V1.png)
P value = 0.00291 (Wilcoxon-test), Q value = 0.026
Table S167. Gene #61: '13q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 283 | 61.5 (12.1) |
13Q LOSS MUTATED | 24 | 52.8 (15.3) |
13Q LOSS WILD-TYPE | 259 | 62.3 (11.5) |
Figure S167. Get High-res Image Gene #61: '13q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D61V2.png)
P value = 0.00023 (Fisher's exact test), Q value = 0.0036
Table S168. Gene #61: '13q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
13Q LOSS MUTATED | 7 | 1 | 12 | 3 |
13Q LOSS WILD-TYPE | 164 | 20 | 40 | 12 |
Figure S168. Get High-res Image Gene #61: '13q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D61V3.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00044
Table S169. Gene #61: '13q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
13Q LOSS MUTATED | 7 | 2 | 15 |
13Q LOSS WILD-TYPE | 184 | 31 | 47 |
Figure S169. Get High-res Image Gene #61: '13q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D61V4.png)
P value = 0.00378 (Fisher's exact test), Q value = 0.031
Table S170. Gene #61: '13q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
13Q LOSS MUTATED | 3 | 7 | 2 |
13Q LOSS WILD-TYPE | 46 | 17 | 2 |
Figure S170. Get High-res Image Gene #61: '13q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D61V5.png)
P value = 1.74e-05 (Fisher's exact test), Q value = 0.00043
Table S171. Gene #61: '13q loss' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
13Q LOSS MUTATED | 16 | 8 |
13Q LOSS WILD-TYPE | 60 | 204 |
Figure S171. Get High-res Image Gene #61: '13q loss' versus Clinical Feature #7: 'GENDER'
![](D61V7.png)
P value = 0.064 (Wilcoxon-test), Q value = 0.25
Table S172. Gene #61: '13q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
13Q LOSS MUTATED | 9 | 75.6 (32.1) |
13Q LOSS WILD-TYPE | 67 | 89.1 (20.1) |
Figure S172. Get High-res Image Gene #61: '13q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D61V8.png)
P value = 0.000118 (logrank test), Q value = 0.002
Table S173. Gene #62: '14q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
14Q LOSS MUTATED | 47 | 14 | 0.1 - 80.9 (19.6) |
14Q LOSS WILD-TYPE | 238 | 30 | 0.1 - 194.8 (26.0) |
Figure S173. Get High-res Image Gene #62: '14q loss' versus Clinical Feature #1: 'Time to Death'
![](D62V1.png)
P value = 0.00191 (Fisher's exact test), Q value = 0.018
Table S174. Gene #62: '14q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
14Q LOSS MUTATED | 18 | 3 | 14 | 6 |
14Q LOSS WILD-TYPE | 153 | 18 | 38 | 9 |
Figure S174. Get High-res Image Gene #62: '14q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D62V3.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.0011
Table S175. Gene #62: '14q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
14Q LOSS MUTATED | 20 | 5 | 22 |
14Q LOSS WILD-TYPE | 171 | 28 | 40 |
Figure S175. Get High-res Image Gene #62: '14q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D62V4.png)
P value = 0.00138 (Fisher's exact test), Q value = 0.014
Table S176. Gene #62: '14q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
14Q LOSS MUTATED | 8 | 8 | 4 |
14Q LOSS WILD-TYPE | 41 | 16 | 0 |
Figure S176. Get High-res Image Gene #62: '14q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D62V5.png)
P value = 0.00338 (Fisher's exact test), Q value = 0.029
Table S177. Gene #62: '14q loss' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
14Q LOSS MUTATED | 21 | 26 |
14Q LOSS WILD-TYPE | 55 | 186 |
Figure S177. Get High-res Image Gene #62: '14q loss' versus Clinical Feature #7: 'GENDER'
![](D62V7.png)
P value = 0.00896 (Wilcoxon-test), Q value = 0.062
Table S178. Gene #62: '14q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
14Q LOSS MUTATED | 15 | 71.3 (35.8) |
14Q LOSS WILD-TYPE | 61 | 91.5 (15.0) |
Figure S178. Get High-res Image Gene #62: '14q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D62V8.png)
P value = 0.0152 (logrank test), Q value = 0.091
Table S179. Gene #63: '15q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
15Q LOSS MUTATED | 31 | 9 | 0.1 - 194.8 (19.4) |
15Q LOSS WILD-TYPE | 254 | 35 | 0.1 - 129.9 (26.0) |
Figure S179. Get High-res Image Gene #63: '15q loss' versus Clinical Feature #1: 'Time to Death'
![](D63V1.png)
P value = 0.00163 (Fisher's exact test), Q value = 0.016
Table S180. Gene #63: '15q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
15Q LOSS MUTATED | 11 | 1 | 10 | 5 |
15Q LOSS WILD-TYPE | 160 | 20 | 42 | 10 |
Figure S180. Get High-res Image Gene #63: '15q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D63V3.png)
P value = 0.00034 (Fisher's exact test), Q value = 0.0051
Table S181. Gene #63: '15q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
15Q LOSS MUTATED | 13 | 2 | 16 |
15Q LOSS WILD-TYPE | 178 | 31 | 46 |
Figure S181. Get High-res Image Gene #63: '15q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D63V4.png)
P value = 0.00575 (Fisher's exact test), Q value = 0.042
Table S182. Gene #63: '15q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
15Q LOSS MUTATED | 4 | 8 | 2 |
15Q LOSS WILD-TYPE | 45 | 16 | 2 |
Figure S182. Get High-res Image Gene #63: '15q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D63V5.png)
P value = 0.000422 (logrank test), Q value = 0.006
Table S183. Gene #64: '16p loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
16P LOSS MUTATED | 4 | 3 | 11.1 - 58.2 (20.6) |
16P LOSS WILD-TYPE | 281 | 41 | 0.1 - 194.8 (25.4) |
Figure S183. Get High-res Image Gene #64: '16p loss' versus Clinical Feature #1: 'Time to Death'
![](D64V1.png)
P value = 0.0641 (Fisher's exact test), Q value = 0.25
Table S184. Gene #64: '16p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
16P LOSS MUTATED | 1 | 0 | 3 |
16P LOSS WILD-TYPE | 190 | 33 | 59 |
Figure S184. Get High-res Image Gene #64: '16p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D64V4.png)
P value = 0.0577 (Fisher's exact test), Q value = 0.23
Table S185. Gene #64: '16p loss' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
16P LOSS MUTATED | 3 | 1 |
16P LOSS WILD-TYPE | 73 | 211 |
Figure S185. Get High-res Image Gene #64: '16p loss' versus Clinical Feature #7: 'GENDER'
![](D64V7.png)
P value = 1.43e-05 (logrank test), Q value = 0.00036
Table S186. Gene #65: '16q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
16Q LOSS MUTATED | 7 | 5 | 11.1 - 58.2 (19.6) |
16Q LOSS WILD-TYPE | 278 | 39 | 0.1 - 194.8 (25.5) |
Figure S186. Get High-res Image Gene #65: '16q loss' versus Clinical Feature #1: 'Time to Death'
![](D65V1.png)
P value = 0.00442 (Fisher's exact test), Q value = 0.035
Table S187. Gene #65: '16q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
16Q LOSS MUTATED | 1 | 0 | 5 | 1 |
16Q LOSS WILD-TYPE | 170 | 21 | 47 | 14 |
Figure S187. Get High-res Image Gene #65: '16q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D65V3.png)
P value = 0.0127 (Fisher's exact test), Q value = 0.079
Table S188. Gene #65: '16q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
16Q LOSS MUTATED | 2 | 0 | 5 |
16Q LOSS WILD-TYPE | 189 | 33 | 57 |
Figure S188. Get High-res Image Gene #65: '16q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D65V4.png)
P value = 0.0652 (Fisher's exact test), Q value = 0.25
Table S189. Gene #65: '16q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
16Q LOSS MUTATED | 1 | 2 | 1 |
16Q LOSS WILD-TYPE | 48 | 22 | 3 |
Figure S189. Get High-res Image Gene #65: '16q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D65V5.png)
P value = 3.64e-07 (logrank test), Q value = 3.2e-05
Table S190. Gene #66: '17p loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
17P LOSS MUTATED | 13 | 7 | 0.2 - 67.4 (14.1) |
17P LOSS WILD-TYPE | 272 | 37 | 0.1 - 194.8 (25.7) |
Figure S190. Get High-res Image Gene #66: '17p loss' versus Clinical Feature #1: 'Time to Death'
![](D66V1.png)
P value = 0.00241 (Fisher's exact test), Q value = 0.022
Table S191. Gene #66: '17p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
17P LOSS MUTATED | 2 | 1 | 4 | 3 |
17P LOSS WILD-TYPE | 169 | 20 | 48 | 12 |
Figure S191. Get High-res Image Gene #66: '17p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D66V3.png)
P value = 0.00153 (Fisher's exact test), Q value = 0.015
Table S192. Gene #66: '17p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
17P LOSS MUTATED | 3 | 3 | 7 |
17P LOSS WILD-TYPE | 188 | 30 | 55 |
Figure S192. Get High-res Image Gene #66: '17p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D66V4.png)
P value = 0.047 (Fisher's exact test), Q value = 0.2
Table S193. Gene #66: '17p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
17P LOSS MUTATED | 3 | 1 | 2 |
17P LOSS WILD-TYPE | 46 | 23 | 2 |
Figure S193. Get High-res Image Gene #66: '17p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D66V5.png)
P value = 0.0595 (Fisher's exact test), Q value = 0.23
Table S194. Gene #66: '17p loss' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 94 | 9 |
17P LOSS MUTATED | 3 | 2 |
17P LOSS WILD-TYPE | 91 | 7 |
Figure S194. Get High-res Image Gene #66: '17p loss' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
![](D66V6.png)
P value = 1.08e-06 (logrank test), Q value = 7.4e-05
Table S195. Gene #67: '18p loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
18P LOSS MUTATED | 42 | 15 | 2.0 - 123.6 (18.8) |
18P LOSS WILD-TYPE | 243 | 29 | 0.1 - 194.8 (26.2) |
Figure S195. Get High-res Image Gene #67: '18p loss' versus Clinical Feature #1: 'Time to Death'
![](D67V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S196. Gene #67: '18p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
18P LOSS MUTATED | 13 | 1 | 17 | 6 |
18P LOSS WILD-TYPE | 158 | 20 | 35 | 9 |
Figure S196. Get High-res Image Gene #67: '18p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D67V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S197. Gene #67: '18p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
18P LOSS MUTATED | 14 | 4 | 24 |
18P LOSS WILD-TYPE | 177 | 29 | 38 |
Figure S197. Get High-res Image Gene #67: '18p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D67V4.png)
P value = 0.0162 (Fisher's exact test), Q value = 0.097
Table S198. Gene #67: '18p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
18P LOSS MUTATED | 6 | 9 | 2 |
18P LOSS WILD-TYPE | 43 | 15 | 2 |
Figure S198. Get High-res Image Gene #67: '18p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D67V5.png)
P value = 0.0577 (Fisher's exact test), Q value = 0.23
Table S199. Gene #67: '18p loss' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 94 | 9 |
18P LOSS MUTATED | 15 | 4 |
18P LOSS WILD-TYPE | 79 | 5 |
Figure S199. Get High-res Image Gene #67: '18p loss' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
![](D67V6.png)
P value = 0.0359 (Fisher's exact test), Q value = 0.17
Table S200. Gene #67: '18p loss' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
18P LOSS MUTATED | 17 | 25 |
18P LOSS WILD-TYPE | 59 | 187 |
Figure S200. Get High-res Image Gene #67: '18p loss' versus Clinical Feature #7: 'GENDER'
![](D67V7.png)
P value = 3.44e-07 (logrank test), Q value = 3.2e-05
Table S201. Gene #68: '18q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
18Q LOSS MUTATED | 44 | 16 | 0.4 - 123.6 (17.6) |
18Q LOSS WILD-TYPE | 241 | 28 | 0.1 - 194.8 (26.3) |
Figure S201. Get High-res Image Gene #68: '18q loss' versus Clinical Feature #1: 'Time to Death'
![](D68V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S202. Gene #68: '18q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
18Q LOSS MUTATED | 13 | 1 | 19 | 6 |
18Q LOSS WILD-TYPE | 158 | 20 | 33 | 9 |
Figure S202. Get High-res Image Gene #68: '18q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D68V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S203. Gene #68: '18q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
18Q LOSS MUTATED | 15 | 5 | 24 |
18Q LOSS WILD-TYPE | 176 | 28 | 38 |
Figure S203. Get High-res Image Gene #68: '18q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D68V4.png)
P value = 0.00097 (Fisher's exact test), Q value = 0.011
Table S204. Gene #68: '18q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
18Q LOSS MUTATED | 6 | 12 | 2 |
18Q LOSS WILD-TYPE | 43 | 12 | 2 |
Figure S204. Get High-res Image Gene #68: '18q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D68V5.png)
P value = 0.00476 (Fisher's exact test), Q value = 0.037
Table S205. Gene #69: '19p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
19P LOSS MUTATED | 4 | 1 | 8 | 1 |
19P LOSS WILD-TYPE | 167 | 20 | 44 | 14 |
Figure S205. Get High-res Image Gene #69: '19p loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D69V3.png)
P value = 0.00568 (Fisher's exact test), Q value = 0.042
Table S206. Gene #69: '19p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
19P LOSS MUTATED | 6 | 1 | 9 |
19P LOSS WILD-TYPE | 185 | 32 | 53 |
Figure S206. Get High-res Image Gene #69: '19p loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D69V4.png)
P value = 0.0436 (Fisher's exact test), Q value = 0.19
Table S207. Gene #69: '19p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
19P LOSS MUTATED | 1 | 3 | 1 |
19P LOSS WILD-TYPE | 48 | 21 | 3 |
Figure S207. Get High-res Image Gene #69: '19p loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D69V5.png)
P value = 0.00206 (logrank test), Q value = 0.019
Table S208. Gene #70: '19q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
19Q LOSS MUTATED | 15 | 5 | 0.9 - 54.6 (16.9) |
19Q LOSS WILD-TYPE | 270 | 39 | 0.1 - 194.8 (25.5) |
Figure S208. Get High-res Image Gene #70: '19q loss' versus Clinical Feature #1: 'Time to Death'
![](D70V1.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00079
Table S209. Gene #70: '19q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
19Q LOSS MUTATED | 2 | 1 | 10 | 1 |
19Q LOSS WILD-TYPE | 169 | 20 | 42 | 14 |
Figure S209. Get High-res Image Gene #70: '19q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D70V3.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00091
Table S210. Gene #70: '19q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
19Q LOSS MUTATED | 3 | 1 | 11 |
19Q LOSS WILD-TYPE | 188 | 32 | 51 |
Figure S210. Get High-res Image Gene #70: '19q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D70V4.png)
P value = 0.0428 (Fisher's exact test), Q value = 0.19
Table S211. Gene #70: '19q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
19Q LOSS MUTATED | 1 | 3 | 1 |
19Q LOSS WILD-TYPE | 48 | 21 | 3 |
Figure S211. Get High-res Image Gene #70: '19q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D70V5.png)
P value = 0.00358 (Fisher's exact test), Q value = 0.03
Table S212. Gene #71: '21q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
21Q LOSS MUTATED | 17 | 3 | 14 | 5 |
21Q LOSS WILD-TYPE | 154 | 18 | 38 | 10 |
Figure S212. Get High-res Image Gene #71: '21q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D71V3.png)
P value = 0.00041 (Fisher's exact test), Q value = 0.0059
Table S213. Gene #71: '21q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
21Q LOSS MUTATED | 18 | 6 | 19 |
21Q LOSS WILD-TYPE | 173 | 27 | 43 |
Figure S213. Get High-res Image Gene #71: '21q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D71V4.png)
P value = 0.00554 (Wilcoxon-test), Q value = 0.041
Table S214. Gene #71: '21q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
21Q LOSS MUTATED | 11 | 79.1 (26.6) |
21Q LOSS WILD-TYPE | 65 | 88.9 (21.1) |
Figure S214. Get High-res Image Gene #71: '21q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D71V8.png)
P value = 0.00125 (logrank test), Q value = 0.013
Table S215. Gene #72: '22q loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
22Q LOSS MUTATED | 60 | 15 | 0.9 - 123.6 (19.9) |
22Q LOSS WILD-TYPE | 225 | 29 | 0.1 - 194.8 (26.0) |
Figure S215. Get High-res Image Gene #72: '22q loss' versus Clinical Feature #1: 'Time to Death'
![](D72V1.png)
P value = 0.0636 (Wilcoxon-test), Q value = 0.25
Table S216. Gene #72: '22q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 283 | 61.5 (12.1) |
22Q LOSS MUTATED | 59 | 58.4 (13.8) |
22Q LOSS WILD-TYPE | 224 | 62.3 (11.5) |
Figure S216. Get High-res Image Gene #72: '22q loss' versus Clinical Feature #2: 'YEARS_TO_BIRTH'
![](D72V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S217. Gene #72: '22q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
22Q LOSS MUTATED | 20 | 3 | 25 | 8 |
22Q LOSS WILD-TYPE | 151 | 18 | 27 | 7 |
Figure S217. Get High-res Image Gene #72: '22q loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D72V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S218. Gene #72: '22q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
22Q LOSS MUTATED | 24 | 5 | 31 |
22Q LOSS WILD-TYPE | 167 | 28 | 31 |
Figure S218. Get High-res Image Gene #72: '22q loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D72V4.png)
P value = 0.00561 (Fisher's exact test), Q value = 0.042
Table S219. Gene #72: '22q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
22Q LOSS MUTATED | 11 | 14 | 2 |
22Q LOSS WILD-TYPE | 38 | 10 | 2 |
Figure S219. Get High-res Image Gene #72: '22q loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D72V5.png)
P value = 0.043 (Fisher's exact test), Q value = 0.19
Table S220. Gene #72: '22q loss' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
nPatients | 0 | 1 |
---|---|---|
ALL | 94 | 9 |
22Q LOSS MUTATED | 21 | 5 |
22Q LOSS WILD-TYPE | 73 | 4 |
Figure S220. Get High-res Image Gene #72: '22q loss' versus Clinical Feature #6: 'PATHOLOGY_M_STAGE'
![](D72V6.png)
P value = 0.000466 (Fisher's exact test), Q value = 0.0064
Table S221. Gene #72: '22q loss' versus Clinical Feature #7: 'GENDER'
nPatients | FEMALE | MALE |
---|---|---|
ALL | 76 | 212 |
22Q LOSS MUTATED | 27 | 33 |
22Q LOSS WILD-TYPE | 49 | 179 |
Figure S221. Get High-res Image Gene #72: '22q loss' versus Clinical Feature #7: 'GENDER'
![](D72V7.png)
P value = 0.00113 (Wilcoxon-test), Q value = 0.013
Table S222. Gene #72: '22q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
22Q LOSS MUTATED | 19 | 70.5 (35.5) |
22Q LOSS WILD-TYPE | 57 | 93.2 (10.7) |
Figure S222. Get High-res Image Gene #72: '22q loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D72V8.png)
P value = 1.09e-05 (logrank test), Q value = 0.00028
Table S223. Gene #73: 'xp loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
XP LOSS MUTATED | 33 | 13 | 0.4 - 91.7 (19.6) |
XP LOSS WILD-TYPE | 252 | 31 | 0.1 - 194.8 (26.0) |
Figure S223. Get High-res Image Gene #73: 'xp loss' versus Clinical Feature #1: 'Time to Death'
![](D73V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S224. Gene #73: 'xp loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
XP LOSS MUTATED | 7 | 1 | 15 | 4 |
XP LOSS WILD-TYPE | 164 | 20 | 37 | 11 |
Figure S224. Get High-res Image Gene #73: 'xp loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D73V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
Table S225. Gene #73: 'xp loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
XP LOSS MUTATED | 10 | 4 | 19 |
XP LOSS WILD-TYPE | 181 | 29 | 43 |
Figure S225. Get High-res Image Gene #73: 'xp loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D73V4.png)
P value = 0.0174 (Fisher's exact test), Q value = 0.1
Table S226. Gene #73: 'xp loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
XP LOSS MUTATED | 5 | 9 | 1 |
XP LOSS WILD-TYPE | 44 | 15 | 3 |
Figure S226. Get High-res Image Gene #73: 'xp loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D73V5.png)
P value = 0.00532 (Wilcoxon-test), Q value = 0.04
Table S227. Gene #73: 'xp loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
XP LOSS MUTATED | 9 | 66.7 (35.4) |
XP LOSS WILD-TYPE | 67 | 90.3 (18.3) |
Figure S227. Get High-res Image Gene #73: 'xp loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D73V8.png)
P value = 0.0406 (Fisher's exact test), Q value = 0.18
Table S228. Gene #73: 'xp loss' versus Clinical Feature #11: 'RACE'
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 6 | 61 | 204 |
XP LOSS MUTATED | 0 | 3 | 9 | 20 |
XP LOSS WILD-TYPE | 2 | 3 | 52 | 184 |
Figure S228. Get High-res Image Gene #73: 'xp loss' versus Clinical Feature #11: 'RACE'
![](D73V11.png)
P value = 6.17e-07 (logrank test), Q value = 4.8e-05
Table S229. Gene #74: 'xq loss' versus Clinical Feature #1: 'Time to Death'
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 285 | 44 | 0.1 - 194.8 (25.3) |
XQ LOSS MUTATED | 29 | 13 | 0.4 - 91.7 (19.3) |
XQ LOSS WILD-TYPE | 256 | 31 | 0.1 - 194.8 (26.0) |
Figure S229. Get High-res Image Gene #74: 'xq loss' versus Clinical Feature #1: 'Time to Death'
![](D74V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00044
Table S230. Gene #74: 'xq loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 171 | 21 | 52 | 15 |
XQ LOSS MUTATED | 7 | 1 | 13 | 4 |
XQ LOSS WILD-TYPE | 164 | 20 | 39 | 11 |
Figure S230. Get High-res Image Gene #74: 'xq loss' versus Clinical Feature #3: 'PATHOLOGIC_STAGE'
![](D74V3.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00044
Table S231. Gene #74: 'xq loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
nPatients | T1 | T2 | T3+T4 |
---|---|---|---|
ALL | 191 | 33 | 62 |
XQ LOSS MUTATED | 9 | 3 | 17 |
XQ LOSS WILD-TYPE | 182 | 30 | 45 |
Figure S231. Get High-res Image Gene #74: 'xq loss' versus Clinical Feature #4: 'PATHOLOGY_T_STAGE'
![](D74V4.png)
P value = 0.00986 (Fisher's exact test), Q value = 0.065
Table S232. Gene #74: 'xq loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 49 | 24 | 4 |
XQ LOSS MUTATED | 4 | 9 | 1 |
XQ LOSS WILD-TYPE | 45 | 15 | 3 |
Figure S232. Get High-res Image Gene #74: 'xq loss' versus Clinical Feature #5: 'PATHOLOGY_N_STAGE'
![](D74V5.png)
P value = 0.00532 (Wilcoxon-test), Q value = 0.04
Table S233. Gene #74: 'xq loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 76 | 87.5 (22.0) |
XQ LOSS MUTATED | 9 | 66.7 (35.4) |
XQ LOSS WILD-TYPE | 67 | 90.3 (18.3) |
Figure S233. Get High-res Image Gene #74: 'xq loss' versus Clinical Feature #8: 'KARNOFSKY_PERFORMANCE_SCORE'
![](D74V8.png)
P value = 0.0415 (Fisher's exact test), Q value = 0.18
Table S234. Gene #74: 'xq loss' versus Clinical Feature #11: 'RACE'
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 6 | 61 | 204 |
XQ LOSS MUTATED | 0 | 3 | 7 | 18 |
XQ LOSS WILD-TYPE | 2 | 3 | 54 | 186 |
Figure S234. Get High-res Image Gene #74: 'xq loss' versus Clinical Feature #11: 'RACE'
![](D74V11.png)
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Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/22533934/transformed.cor.cli.txt
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Clinical data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/KIRP-TP/22507257/KIRP-TP.merged_data.txt
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Number of patients = 288
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Number of significantly arm-level cnvs = 74
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Number of selected clinical features = 12
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Exclude regions that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.