This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 74 arm-level events and 10 molecular subtypes across 288 patients, 362 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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1q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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2p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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2q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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3p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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5q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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6p gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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6q gain cnv correlated to 'METHLYATION_CNMF'.
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7p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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9p gain cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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10p gain cnv correlated to 'METHLYATION_CNMF'.
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10q gain cnv correlated to 'METHLYATION_CNMF'.
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11p gain cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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11q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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12p gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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14q gain cnv correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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16p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p gain cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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19q gain cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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21q gain cnv correlated to 'CN_CNMF'.
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xp gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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1q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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2p loss cnv correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MIRSEQ_CNMF'.
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2q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
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3p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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4p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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5q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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6p loss cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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6q loss cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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8p loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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8q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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9p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10q loss cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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14q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p loss cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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16q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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19q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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21q loss cnv correlated to 'CN_CNMF'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xp loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 74 arm-level events and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 362 significant findings detected.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
7p gain | 171 (59%) | 117 |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.0101 (0.0279) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.00012 (0.000663) |
0.00012 (0.000663) |
2e-05 (0.000151) |
2e-05 (0.000151) |
7q gain | 172 (60%) | 116 |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.018 (0.0442) |
2e-05 (0.000151) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.00017 (0.000892) |
0.00017 (0.000892) |
6e-05 (0.000383) |
1e-05 (8.41e-05) |
17p gain | 172 (60%) | 116 |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
6e-05 (0.000383) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.00011 (0.000631) |
0.00014 (0.000762) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
17q gain | 191 (66%) | 97 |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.00083 (0.00353) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.00786 (0.0225) |
0.00097 (0.00388) |
3e-05 (0.000213) |
2e-05 (0.000151) |
18p loss | 42 (15%) | 246 |
0.0206 (0.0499) |
1e-05 (8.41e-05) |
0.00213 (0.00761) |
0.00461 (0.0148) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.00141 (0.00532) |
0.00094 (0.00388) |
0.0249 (0.0575) |
0.0231 (0.0536) |
18q loss | 44 (15%) | 244 |
0.00109 (0.00427) |
1e-05 (8.41e-05) |
0.00622 (0.0186) |
0.00046 (0.00213) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.00136 (0.00519) |
0.00037 (0.00177) |
0.0222 (0.0525) |
0.00492 (0.0154) |
16p gain | 153 (53%) | 135 |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.912 (0.953) |
0.00076 (0.00331) |
1e-05 (8.41e-05) |
4e-05 (0.000269) |
5e-05 (0.000327) |
1e-05 (8.41e-05) |
0.00019 (0.00097) |
3e-05 (0.000213) |
16q gain | 148 (51%) | 140 |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.954 (0.985) |
0.00187 (0.00682) |
1e-05 (8.41e-05) |
0.00011 (0.000631) |
2e-05 (0.000151) |
1e-05 (8.41e-05) |
0.00011 (0.000631) |
1e-05 (8.41e-05) |
20p gain | 99 (34%) | 189 |
1e-05 (8.41e-05) |
0.00021 (0.00104) |
0.0259 (0.0592) |
0.00265 (0.00929) |
0.00114 (0.00444) |
0.0218 (0.0519) |
0.00551 (0.0167) |
0.0031 (0.0106) |
0.0718 (0.136) |
0.043 (0.0902) |
xp gain | 88 (31%) | 200 |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.109 (0.184) |
0.00202 (0.00729) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
7e-05 (0.000432) |
0.00019 (0.00097) |
0.0002 (0.00101) |
0.00069 (0.00304) |
xq gain | 92 (32%) | 196 |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.125 (0.207) |
0.00707 (0.0208) |
1e-05 (8.41e-05) |
3e-05 (0.000213) |
0.00039 (0.00185) |
0.00019 (0.00097) |
0.00097 (0.00388) |
0.00302 (0.0104) |
13q loss | 24 (8%) | 264 |
0.00061 (0.00272) |
1e-05 (8.41e-05) |
0.478 (0.592) |
0.00139 (0.00527) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.0367 (0.0793) |
0.0104 (0.028) |
0.00763 (0.0219) |
0.00508 (0.0158) |
14q loss | 47 (16%) | 241 |
4e-05 (0.000269) |
5e-05 (0.000327) |
0.00563 (0.017) |
7e-05 (0.000432) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.0405 (0.0856) |
0.861 (0.923) |
0.019 (0.0463) |
0.00273 (0.00948) |
3p gain | 75 (26%) | 213 |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.214 (0.317) |
0.00017 (0.000892) |
1e-05 (8.41e-05) |
0.00279 (0.00965) |
0.0108 (0.0289) |
0.00077 (0.00333) |
0.122 (0.203) |
0.0168 (0.0417) |
3q gain | 95 (33%) | 193 |
1e-05 (8.41e-05) |
2e-05 (0.000151) |
0.262 (0.376) |
0.00467 (0.015) |
1e-05 (8.41e-05) |
0.00469 (0.015) |
0.00132 (0.00506) |
0.00088 (0.00368) |
0.734 (0.82) |
0.00796 (0.0227) |
4q loss | 26 (9%) | 262 |
0.00034 (0.00163) |
1e-05 (8.41e-05) |
0.477 (0.592) |
0.00359 (0.012) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.0364 (0.0787) |
0.201 (0.303) |
0.0165 (0.0413) |
0.0031 (0.0106) |
9p loss | 33 (11%) | 255 |
0.00033 (0.00161) |
1e-05 (8.41e-05) |
0.334 (0.459) |
0.0158 (0.04) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.0181 (0.0443) |
0.143 (0.23) |
0.0256 (0.0586) |
0.00095 (0.00388) |
9q loss | 34 (12%) | 254 |
0.00148 (0.00553) |
1e-05 (8.41e-05) |
0.0571 (0.113) |
0.00479 (0.0152) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.0423 (0.0889) |
0.0641 (0.124) |
0.00915 (0.0255) |
0.00041 (0.00192) |
xp loss | 33 (11%) | 255 |
0.00607 (0.0183) |
1e-05 (8.41e-05) |
0.216 (0.318) |
0.00242 (0.00856) |
1e-05 (8.41e-05) |
3e-05 (0.000213) |
0.023 (0.0536) |
0.413 (0.534) |
0.0266 (0.0602) |
0.00398 (0.013) |
3p loss | 21 (7%) | 267 |
4e-05 (0.000269) |
4e-05 (0.000269) |
0.159 (0.25) |
0.0326 (0.0716) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.0386 (0.0824) |
0.107 (0.182) |
0.089 (0.157) |
0.0187 (0.0457) |
4p loss | 25 (9%) | 263 |
0.00081 (0.00346) |
1e-05 (8.41e-05) |
0.207 (0.308) |
0.00069 (0.00304) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.0764 (0.142) |
0.0681 (0.13) |
0.0165 (0.0413) |
0.00539 (0.0165) |
10q loss | 18 (6%) | 270 |
0.0974 (0.169) |
0.00016 (0.000864) |
0.608 (0.716) |
0.0234 (0.0542) |
3e-05 (0.000213) |
0.00104 (0.00409) |
0.0122 (0.0324) |
0.612 (0.719) |
0.0225 (0.0528) |
0.00094 (0.00388) |
15q loss | 31 (11%) | 257 |
0.0223 (0.0527) |
2e-05 (0.000151) |
0.0915 (0.161) |
0.0288 (0.0643) |
8e-05 (0.00047) |
1e-05 (8.41e-05) |
0.0208 (0.0501) |
0.0603 (0.119) |
0.124 (0.205) |
0.0252 (0.058) |
22q loss | 60 (21%) | 228 |
0.001 (0.00396) |
1e-05 (8.41e-05) |
0.435 (0.553) |
0.0146 (0.0375) |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
8e-05 (0.00047) |
0.695 (0.783) |
0.147 (0.235) |
0.00861 (0.0241) |
1p gain | 10 (3%) | 278 |
0.0159 (0.04) |
1e-05 (8.41e-05) |
0.282 (0.398) |
0.0104 (0.028) |
8e-05 (0.00047) |
0.00374 (0.0124) |
0.867 (0.924) |
0.039 (0.0828) |
0.143 (0.23) |
0.161 (0.252) |
1q gain | 17 (6%) | 271 |
0.00034 (0.00163) |
1e-05 (8.41e-05) |
0.605 (0.716) |
0.0494 (0.101) |
1e-05 (8.41e-05) |
0.00021 (0.00104) |
0.696 (0.783) |
0.0102 (0.0279) |
0.084 (0.151) |
0.0554 (0.112) |
20q gain | 101 (35%) | 187 |
1e-05 (8.41e-05) |
0.00056 (0.00254) |
0.0719 (0.136) |
0.00762 (0.0219) |
0.00745 (0.0216) |
0.0502 (0.102) |
0.0127 (0.0334) |
0.00523 (0.0161) |
0.152 (0.241) |
0.0966 (0.168) |
5q loss | 8 (3%) | 280 |
0.0395 (0.0837) |
4e-05 (0.000269) |
0.581 (0.691) |
0.0751 (0.14) |
0.00668 (0.0199) |
0.00028 (0.00137) |
0.0709 (0.135) |
0.0231 (0.0536) |
0.022 (0.0523) |
0.262 (0.376) |
11p loss | 17 (6%) | 271 |
0.0125 (0.0331) |
0.00748 (0.0216) |
0.683 (0.776) |
0.274 (0.389) |
3e-05 (0.000213) |
0.00416 (0.0135) |
0.0749 (0.14) |
0.207 (0.308) |
0.0286 (0.0642) |
0.0136 (0.0349) |
11q loss | 21 (7%) | 267 |
0.0463 (0.0957) |
0.00096 (0.00388) |
0.0964 (0.168) |
0.0122 (0.0324) |
2e-05 (0.000151) |
0.00206 (0.0074) |
0.0609 (0.119) |
0.344 (0.471) |
0.0738 (0.139) |
0.0443 (0.0923) |
17p loss | 13 (5%) | 275 |
0.00332 (0.0112) |
0.00026 (0.00128) |
0.252 (0.366) |
0.3 (0.42) |
0.00012 (0.000663) |
0.00021 (0.00104) |
0.156 (0.247) |
0.424 (0.545) |
0.00625 (0.0186) |
0.00809 (0.0228) |
xq loss | 29 (10%) | 259 |
0.00273 (0.00948) |
1e-05 (8.41e-05) |
0.444 (0.56) |
0.0125 (0.033) |
1e-05 (8.41e-05) |
8e-05 (0.00047) |
0.0801 (0.147) |
0.684 (0.777) |
0.0655 (0.126) |
0.0134 (0.0346) |
11q gain | 10 (3%) | 278 |
0.0453 (0.0943) |
8e-05 (0.00047) |
0.35 (0.475) |
0.0175 (0.0433) |
0.061 (0.119) |
0.00367 (0.0122) |
0.00542 (0.0165) |
0.921 (0.96) |
0.909 (0.951) |
0.557 (0.672) |
12p gain | 112 (39%) | 176 |
0.0211 (0.0507) |
0.566 (0.676) |
0.0285 (0.0641) |
0.0815 (0.149) |
0.00099 (0.00394) |
0.116 (0.195) |
0.03 (0.0667) |
0.0507 (0.103) |
0.471 (0.588) |
0.0269 (0.0606) |
12q gain | 112 (39%) | 176 |
0.0213 (0.0507) |
0.564 (0.676) |
0.0289 (0.0643) |
0.0818 (0.149) |
0.00076 (0.00331) |
0.115 (0.194) |
0.0301 (0.0668) |
0.0515 (0.104) |
0.472 (0.588) |
0.0262 (0.0595) |
1p loss | 30 (10%) | 258 |
0.00718 (0.0211) |
0.00058 (0.00262) |
0.89 (0.938) |
0.632 (0.733) |
2e-05 (0.000151) |
0.00086 (0.00362) |
0.00516 (0.0159) |
0.0633 (0.122) |
0.956 (0.985) |
0.15 (0.239) |
6q loss | 27 (9%) | 261 |
0.0888 (0.157) |
1e-05 (8.41e-05) |
1 (1.00) |
0.0213 (0.0507) |
1e-05 (8.41e-05) |
4e-05 (0.000269) |
0.0308 (0.068) |
0.79 (0.867) |
0.0809 (0.149) |
0.0991 (0.171) |
10p loss | 17 (6%) | 271 |
0.0935 (0.163) |
0.00012 (0.000663) |
0.81 (0.885) |
0.0827 (0.15) |
8e-05 (0.00047) |
0.0016 (0.00589) |
0.0127 (0.0334) |
0.393 (0.515) |
0.087 (0.154) |
0.0037 (0.0123) |
2q gain | 47 (16%) | 241 |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
1 (1.00) |
0.0334 (0.0731) |
0.46 (0.577) |
0.736 (0.821) |
0.026 (0.0592) |
0.106 (0.181) |
0.632 (0.733) |
0.445 (0.56) |
5p gain | 34 (12%) | 254 |
0.00224 (0.00797) |
0.00047 (0.00215) |
0.763 (0.845) |
0.845 (0.917) |
0.00673 (0.0199) |
0.00013 (0.000713) |
0.635 (0.734) |
0.169 (0.262) |
0.667 (0.764) |
0.168 (0.26) |
5q gain | 31 (11%) | 257 |
7e-05 (0.000432) |
0.00131 (0.00505) |
0.539 (0.654) |
0.781 (0.859) |
0.00047 (0.00215) |
6e-05 (0.000383) |
0.766 (0.847) |
0.264 (0.378) |
0.665 (0.764) |
0.266 (0.38) |
11p gain | 12 (4%) | 276 |
0.373 (0.495) |
7e-05 (0.000432) |
0.432 (0.551) |
0.0072 (0.0211) |
0.0589 (0.117) |
0.00019 (0.00097) |
0.00172 (0.0063) |
0.87 (0.925) |
0.772 (0.852) |
0.413 (0.534) |
3q loss | 6 (2%) | 282 |
0.0048 (0.0152) |
0.00318 (0.0108) |
0.536 (0.653) |
0.203 (0.305) |
0.00061 (0.00272) |
0.00243 (0.00856) |
0.381 (0.503) |
0.667 (0.764) |
0.874 (0.926) |
0.621 (0.728) |
5p loss | 7 (2%) | 281 |
0.192 (0.292) |
0.00041 (0.00192) |
0.578 (0.689) |
0.0756 (0.141) |
0.0324 (0.0715) |
0.00154 (0.0057) |
0.148 (0.238) |
0.0499 (0.102) |
0.0527 (0.107) |
0.43 (0.55) |
6p loss | 21 (7%) | 267 |
0.0936 (0.163) |
5e-05 (0.000327) |
0.947 (0.98) |
0.0406 (0.0856) |
2e-05 (0.000151) |
0.00017 (0.000892) |
0.826 (0.899) |
0.261 (0.376) |
0.564 (0.676) |
0.289 (0.406) |
19p loss | 16 (6%) | 272 |
0.00046 (0.00213) |
0.00151 (0.00562) |
1 (1.00) |
0.123 (0.205) |
0.00191 (0.00693) |
0.0103 (0.0279) |
0.129 (0.213) |
0.0821 (0.15) |
0.16 (0.251) |
0.19 (0.292) |
19q loss | 15 (5%) | 273 |
1e-05 (8.41e-05) |
0.00012 (0.000663) |
0.796 (0.872) |
0.11 (0.186) |
0.0008 (0.00344) |
0.0358 (0.0781) |
0.0571 (0.113) |
0.445 (0.56) |
0.479 (0.592) |
0.327 (0.449) |
2p gain | 42 (15%) | 246 |
1e-05 (8.41e-05) |
1e-05 (8.41e-05) |
0.94 (0.975) |
0.119 (0.2) |
0.312 (0.433) |
0.901 (0.945) |
0.0128 (0.0335) |
0.145 (0.233) |
0.94 (0.975) |
0.668 (0.764) |
6p gain | 10 (3%) | 278 |
0.581 (0.691) |
0.0226 (0.0529) |
0.16 (0.251) |
0.136 (0.222) |
0.015 (0.0382) |
0.0618 (0.12) |
0.917 (0.957) |
0.0385 (0.0824) |
0.14 (0.227) |
0.0929 (0.163) |
8q gain | 25 (9%) | 263 |
0.545 (0.66) |
0.00491 (0.0154) |
0.277 (0.393) |
0.45 (0.565) |
0.0152 (0.0385) |
0.046 (0.0954) |
0.126 (0.208) |
0.0672 (0.129) |
0.0861 (0.153) |
0.198 (0.3) |
14q gain | 3 (1%) | 285 |
0.326 (0.449) |
0.0371 (0.0796) |
0.0169 (0.0417) |
0.41 (0.533) |
0.353 (0.476) |
0.0363 (0.0787) |
0.436 (0.553) |
0.478 (0.592) |
0.539 (0.654) |
0.364 (0.486) |
1q loss | 21 (7%) | 267 |
0.0841 (0.151) |
0.0478 (0.0986) |
0.849 (0.917) |
0.375 (0.497) |
0.185 (0.286) |
0.00808 (0.0228) |
0.231 (0.337) |
0.0128 (0.0335) |
0.533 (0.651) |
0.277 (0.393) |
2p loss | 5 (2%) | 283 |
0.591 (0.701) |
0.00805 (0.0228) |
0.0167 (0.0417) |
0.211 (0.313) |
0.0557 (0.112) |
0.0745 (0.14) |
0.02 (0.0486) |
0.739 (0.822) |
||
8q loss | 9 (3%) | 279 |
0.112 (0.19) |
0.0485 (0.0997) |
0.445 (0.56) |
0.412 (0.534) |
0.00485 (0.0153) |
0.00084 (0.00355) |
0.0601 (0.119) |
0.627 (0.73) |
1 (1.00) |
0.62 (0.727) |
16q loss | 7 (2%) | 281 |
0.137 (0.224) |
0.0131 (0.034) |
0.634 (0.734) |
0.0609 (0.119) |
0.00145 (0.00545) |
0.0131 (0.034) |
0.151 (0.24) |
0.384 (0.506) |
0.13 (0.213) |
0.124 (0.205) |
13q gain | 28 (10%) | 260 |
0.0103 (0.0279) |
0.507 (0.624) |
0.878 (0.928) |
0.69 (0.781) |
0.514 (0.63) |
0.774 (0.853) |
0.0436 (0.0911) |
0.554 (0.67) |
0.123 (0.205) |
0.61 (0.718) |
19p gain | 5 (2%) | 283 |
0.149 (0.238) |
0.00381 (0.0125) |
0.854 (0.917) |
0.204 (0.305) |
0.0565 (0.113) |
0.00995 (0.0275) |
0.105 (0.18) |
0.863 (0.923) |
0.846 (0.917) |
1 (1.00) |
19q gain | 5 (2%) | 283 |
0.149 (0.238) |
0.00378 (0.0124) |
0.851 (0.917) |
0.204 (0.305) |
0.0556 (0.112) |
0.00992 (0.0275) |
0.105 (0.18) |
0.862 (0.923) |
0.847 (0.917) |
1 (1.00) |
2q loss | 3 (1%) | 285 |
0.322 (0.446) |
0.184 (0.285) |
0.353 (0.476) |
0.037 (0.0795) |
0.0152 (0.0385) |
1 (1.00) |
||||
8p loss | 16 (6%) | 272 |
0.136 (0.222) |
0.141 (0.228) |
0.168 (0.261) |
0.284 (0.401) |
0.00436 (0.0141) |
0.00905 (0.0253) |
0.0788 (0.146) |
0.947 (0.98) |
0.932 (0.97) |
0.364 (0.486) |
16p loss | 4 (1%) | 284 |
1 (1.00) |
0.00334 (0.0112) |
0.19 (0.292) |
0.083 (0.15) |
0.0566 (0.113) |
0.00729 (0.0212) |
0.556 (0.671) |
0.224 (0.329) |
0.223 (0.328) |
0.119 (0.2) |
6q gain | 7 (2%) | 281 |
0.627 (0.73) |
0.00515 (0.0159) |
0.394 (0.515) |
0.357 (0.481) |
0.261 (0.376) |
0.215 (0.318) |
0.968 (0.996) |
0.269 (0.383) |
0.373 (0.495) |
0.431 (0.551) |
9p gain | 3 (1%) | 285 |
0.681 (0.776) |
0.427 (0.548) |
0.0363 (0.0787) |
0.647 (0.746) |
0.482 (0.596) |
0.539 (0.654) |
0.364 (0.486) |
|||
10p gain | 8 (3%) | 280 |
0.351 (0.475) |
0.00117 (0.00453) |
0.853 (0.917) |
0.085 (0.152) |
0.0614 (0.119) |
0.291 (0.409) |
0.67 (0.765) |
0.346 (0.472) |
0.875 (0.926) |
0.87 (0.925) |
10q gain | 8 (3%) | 280 |
0.351 (0.475) |
0.00096 (0.00388) |
0.852 (0.917) |
0.0865 (0.154) |
0.061 (0.119) |
0.293 (0.411) |
0.672 (0.766) |
0.346 (0.472) |
0.874 (0.926) |
0.867 (0.924) |
21q gain | 19 (7%) | 269 |
0.00097 (0.00388) |
0.103 (0.176) |
0.607 (0.716) |
0.52 (0.636) |
0.379 (0.501) |
0.948 (0.98) |
0.373 (0.495) |
0.0843 (0.151) |
0.395 (0.516) |
0.306 (0.427) |
21q loss | 43 (15%) | 245 |
0.0102 (0.0279) |
0.262 (0.376) |
0.0739 (0.139) |
0.241 (0.35) |
0.694 (0.783) |
0.419 (0.541) |
0.812 (0.886) |
0.194 (0.295) |
0.662 (0.762) |
0.0981 (0.17) |
4p gain | 10 (3%) | 278 |
0.0889 (0.157) |
0.359 (0.482) |
0.894 (0.94) |
0.437 (0.554) |
0.348 (0.474) |
0.686 (0.777) |
0.225 (0.33) |
0.848 (0.917) |
0.705 (0.79) |
0.894 (0.94) |
4q gain | 9 (3%) | 279 |
0.189 (0.29) |
0.36 (0.482) |
0.895 (0.94) |
0.435 (0.553) |
0.559 (0.672) |
0.741 (0.823) |
0.138 (0.224) |
0.692 (0.782) |
0.403 (0.525) |
1 (1.00) |
8p gain | 20 (7%) | 268 |
0.779 (0.858) |
0.0737 (0.139) |
0.167 (0.26) |
0.56 (0.672) |
0.47 (0.588) |
0.0823 (0.15) |
0.08 (0.147) |
0.324 (0.448) |
0.518 (0.635) |
0.513 (0.63) |
15q gain | 5 (2%) | 283 |
0.163 (0.255) |
0.237 (0.346) |
0.31 (0.432) |
0.204 (0.305) |
0.199 (0.302) |
0.261 (0.376) |
0.107 (0.182) |
0.232 (0.339) |
||
18p gain | 12 (4%) | 276 |
0.0746 (0.14) |
0.218 (0.322) |
0.472 (0.588) |
0.794 (0.87) |
0.624 (0.729) |
0.484 (0.597) |
0.818 (0.892) |
0.567 (0.676) |
0.311 (0.432) |
0.403 (0.525) |
18q gain | 9 (3%) | 279 |
0.0833 (0.15) |
0.338 (0.463) |
0.267 (0.381) |
0.595 (0.705) |
0.632 (0.733) |
0.159 (0.251) |
0.714 (0.799) |
0.203 (0.305) |
0.2 (0.302) |
0.312 (0.433) |
22q gain | 5 (2%) | 283 |
0.191 (0.292) |
0.639 (0.738) |
1 (1.00) |
0.884 (0.933) |
0.397 (0.518) |
0.717 (0.802) |
0.424 (0.545) |
0.391 (0.514) |
0.746 (0.828) |
0.704 (0.79) |
P value = 0.0159 (Fisher's exact test), Q value = 0.04
Table S1. Gene #1: '1p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
1P GAIN MUTATED | 3 | 0 | 1 | 6 |
1P GAIN WILD-TYPE | 103 | 73 | 48 | 54 |
Figure S1. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D1V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S2. Gene #1: '1p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
1P GAIN MUTATED | 1 | 0 | 0 | 0 | 3 | 6 |
1P GAIN WILD-TYPE | 55 | 42 | 59 | 57 | 26 | 23 |
Figure S2. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D1V2.png)
P value = 0.0104 (Fisher's exact test), Q value = 0.028
Table S3. Gene #1: '1p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
1P GAIN MUTATED | 2 | 0 | 6 | 0 |
1P GAIN WILD-TYPE | 37 | 66 | 59 | 43 |
Figure S3. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D1V4.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00047
Table S4. Gene #1: '1p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
1P GAIN MUTATED | 0 | 0 | 1 | 0 | 9 |
1P GAIN WILD-TYPE | 32 | 90 | 69 | 32 | 55 |
Figure S4. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D1V5.png)
P value = 0.00374 (Fisher's exact test), Q value = 0.012
Table S5. Gene #1: '1p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
1P GAIN MUTATED | 6 | 0 | 4 |
1P GAIN WILD-TYPE | 112 | 123 | 43 |
Figure S5. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D1V6.png)
P value = 0.039 (Fisher's exact test), Q value = 0.083
Table S6. Gene #1: '1p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
1P GAIN MUTATED | 4 | 0 | 6 |
1P GAIN WILD-TYPE | 116 | 80 | 82 |
Figure S6. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D1V8.png)
P value = 0.00034 (Fisher's exact test), Q value = 0.0016
Table S7. Gene #2: '1q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
1Q GAIN MUTATED | 6 | 0 | 1 | 10 |
1Q GAIN WILD-TYPE | 100 | 73 | 48 | 50 |
Figure S7. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D2V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S8. Gene #2: '1q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
1Q GAIN MUTATED | 1 | 1 | 0 | 0 | 6 | 8 |
1Q GAIN WILD-TYPE | 55 | 41 | 59 | 57 | 23 | 21 |
Figure S8. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D2V2.png)
P value = 0.0494 (Fisher's exact test), Q value = 0.1
Table S9. Gene #2: '1q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
1Q GAIN MUTATED | 2 | 1 | 8 | 1 |
1Q GAIN WILD-TYPE | 37 | 65 | 57 | 42 |
Figure S9. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D2V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S10. Gene #2: '1q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
1Q GAIN MUTATED | 0 | 0 | 3 | 1 | 13 |
1Q GAIN WILD-TYPE | 32 | 90 | 67 | 31 | 51 |
Figure S10. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D2V5.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.001
Table S11. Gene #2: '1q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
1Q GAIN MUTATED | 12 | 0 | 5 |
1Q GAIN WILD-TYPE | 106 | 123 | 42 |
Figure S11. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D2V6.png)
P value = 0.0102 (Fisher's exact test), Q value = 0.028
Table S12. Gene #2: '1q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
1Q GAIN MUTATED | 9 | 0 | 8 |
1Q GAIN WILD-TYPE | 111 | 80 | 80 |
Figure S12. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D2V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S13. Gene #3: '2p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
2P GAIN MUTATED | 2 | 3 | 28 | 9 |
2P GAIN WILD-TYPE | 104 | 70 | 21 | 51 |
Figure S13. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D3V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S14. Gene #3: '2p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
2P GAIN MUTATED | 4 | 3 | 2 | 19 | 3 | 8 |
2P GAIN WILD-TYPE | 52 | 39 | 57 | 38 | 26 | 21 |
Figure S14. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D3V2.png)
P value = 0.0128 (Fisher's exact test), Q value = 0.033
Table S15. Gene #3: '2p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
2P GAIN MUTATED | 2 | 1 | 17 | 9 | 9 | 4 |
2P GAIN WILD-TYPE | 27 | 36 | 49 | 34 | 71 | 29 |
Figure S15. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D3V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S16. Gene #4: '2q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
2Q GAIN MUTATED | 4 | 4 | 30 | 9 |
2Q GAIN WILD-TYPE | 102 | 69 | 19 | 51 |
Figure S16. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D4V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S17. Gene #4: '2q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
2Q GAIN MUTATED | 5 | 3 | 2 | 22 | 4 | 8 |
2Q GAIN WILD-TYPE | 51 | 39 | 57 | 35 | 25 | 21 |
Figure S17. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D4V2.png)
P value = 0.0334 (Fisher's exact test), Q value = 0.073
Table S18. Gene #4: '2q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
2Q GAIN MUTATED | 9 | 9 | 15 | 2 |
2Q GAIN WILD-TYPE | 30 | 57 | 50 | 41 |
Figure S18. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D4V4.png)
P value = 0.026 (Fisher's exact test), Q value = 0.059
Table S19. Gene #4: '2q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
2Q GAIN MUTATED | 3 | 1 | 17 | 10 | 12 | 4 |
2Q GAIN WILD-TYPE | 26 | 36 | 49 | 33 | 68 | 29 |
Figure S19. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D4V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S20. Gene #5: '3p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
3P GAIN MUTATED | 16 | 19 | 34 | 6 |
3P GAIN WILD-TYPE | 90 | 54 | 15 | 54 |
Figure S20. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D5V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S21. Gene #5: '3p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
3P GAIN MUTATED | 17 | 6 | 9 | 32 | 0 | 5 |
3P GAIN WILD-TYPE | 39 | 36 | 50 | 25 | 29 | 24 |
Figure S21. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D5V2.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00089
Table S22. Gene #5: '3p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
3P GAIN MUTATED | 20 | 18 | 7 | 8 |
3P GAIN WILD-TYPE | 19 | 48 | 58 | 35 |
Figure S22. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D5V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S23. Gene #5: '3p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
3P GAIN MUTATED | 16 | 30 | 21 | 4 | 4 |
3P GAIN WILD-TYPE | 16 | 60 | 49 | 28 | 60 |
Figure S23. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D5V5.png)
P value = 0.00279 (Fisher's exact test), Q value = 0.0096
Table S24. Gene #5: '3p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
3P GAIN MUTATED | 27 | 43 | 5 |
3P GAIN WILD-TYPE | 91 | 80 | 42 |
Figure S24. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D5V6.png)
P value = 0.0108 (Fisher's exact test), Q value = 0.029
Table S25. Gene #5: '3p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
3P GAIN MUTATED | 9 | 10 | 27 | 5 | 15 | 9 |
3P GAIN WILD-TYPE | 20 | 27 | 39 | 38 | 65 | 24 |
Figure S25. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D5V7.png)
P value = 0.00077 (Fisher's exact test), Q value = 0.0033
Table S26. Gene #5: '3p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
3P GAIN MUTATED | 32 | 31 | 12 |
3P GAIN WILD-TYPE | 88 | 49 | 76 |
Figure S26. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D5V8.png)
P value = 0.0168 (Fisher's exact test), Q value = 0.042
Table S27. Gene #5: '3p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
3P GAIN MUTATED | 30 | 15 | 7 |
3P GAIN WILD-TYPE | 62 | 84 | 24 |
Figure S27. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D5V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S28. Gene #6: '3q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
3Q GAIN MUTATED | 24 | 24 | 36 | 11 |
3Q GAIN WILD-TYPE | 82 | 49 | 13 | 49 |
Figure S28. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D6V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S29. Gene #6: '3q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
3Q GAIN MUTATED | 20 | 8 | 15 | 36 | 5 | 5 |
3Q GAIN WILD-TYPE | 36 | 34 | 44 | 21 | 24 | 24 |
Figure S29. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D6V2.png)
P value = 0.00467 (Fisher's exact test), Q value = 0.015
Table S30. Gene #6: '3q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
3Q GAIN MUTATED | 21 | 23 | 14 | 10 |
3Q GAIN WILD-TYPE | 18 | 43 | 51 | 33 |
Figure S30. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D6V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S31. Gene #6: '3q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
3Q GAIN MUTATED | 20 | 35 | 27 | 7 | 6 |
3Q GAIN WILD-TYPE | 12 | 55 | 43 | 25 | 58 |
Figure S31. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D6V5.png)
P value = 0.00469 (Fisher's exact test), Q value = 0.015
Table S32. Gene #6: '3q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
3Q GAIN MUTATED | 35 | 52 | 8 |
3Q GAIN WILD-TYPE | 83 | 71 | 39 |
Figure S32. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D6V6.png)
P value = 0.00132 (Fisher's exact test), Q value = 0.0051
Table S33. Gene #6: '3q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
3Q GAIN MUTATED | 11 | 11 | 31 | 6 | 20 | 16 |
3Q GAIN WILD-TYPE | 18 | 26 | 35 | 37 | 60 | 17 |
Figure S33. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D6V7.png)
P value = 0.00088 (Fisher's exact test), Q value = 0.0037
Table S34. Gene #6: '3q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
3Q GAIN MUTATED | 41 | 37 | 17 |
3Q GAIN WILD-TYPE | 79 | 43 | 71 |
Figure S34. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D6V8.png)
P value = 0.00796 (Fisher's exact test), Q value = 0.023
Table S35. Gene #6: '3q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
3Q GAIN MUTATED | 39 | 24 | 6 |
3Q GAIN WILD-TYPE | 53 | 75 | 25 |
Figure S35. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D6V10.png)
P value = 0.00224 (Fisher's exact test), Q value = 0.008
Table S36. Gene #9: '5p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
5P GAIN MUTATED | 14 | 2 | 4 | 14 |
5P GAIN WILD-TYPE | 92 | 71 | 45 | 46 |
Figure S36. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D9V1.png)
P value = 0.00047 (Fisher's exact test), Q value = 0.0021
Table S37. Gene #9: '5p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
5P GAIN MUTATED | 8 | 5 | 4 | 0 | 7 | 7 |
5P GAIN WILD-TYPE | 48 | 37 | 55 | 57 | 22 | 22 |
Figure S37. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D9V2.png)
P value = 0.00673 (Fisher's exact test), Q value = 0.02
Table S38. Gene #9: '5p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
5P GAIN MUTATED | 5 | 5 | 8 | 1 | 15 |
5P GAIN WILD-TYPE | 27 | 85 | 62 | 31 | 49 |
Figure S38. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D9V5.png)
P value = 0.00013 (Fisher's exact test), Q value = 0.00071
Table S39. Gene #9: '5p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
5P GAIN MUTATED | 23 | 4 | 7 |
5P GAIN WILD-TYPE | 95 | 119 | 40 |
Figure S39. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D9V6.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00043
Table S40. Gene #10: '5q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
5Q GAIN MUTATED | 14 | 0 | 4 | 13 |
5Q GAIN WILD-TYPE | 92 | 73 | 45 | 47 |
Figure S40. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D10V1.png)
P value = 0.00131 (Fisher's exact test), Q value = 0.005
Table S41. Gene #10: '5q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
5Q GAIN MUTATED | 8 | 4 | 2 | 1 | 7 | 6 |
5Q GAIN WILD-TYPE | 48 | 38 | 57 | 56 | 22 | 23 |
Figure S41. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D10V2.png)
P value = 0.00047 (Fisher's exact test), Q value = 0.0021
Table S42. Gene #10: '5q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
5Q GAIN MUTATED | 5 | 3 | 9 | 0 | 14 |
5Q GAIN WILD-TYPE | 27 | 87 | 61 | 32 | 50 |
Figure S42. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D10V5.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00038
Table S43. Gene #10: '5q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
5Q GAIN MUTATED | 23 | 3 | 5 |
5Q GAIN WILD-TYPE | 95 | 120 | 42 |
Figure S43. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D10V6.png)
P value = 0.0226 (Fisher's exact test), Q value = 0.053
Table S44. Gene #11: '6p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
6P GAIN MUTATED | 1 | 1 | 1 | 0 | 3 | 3 |
6P GAIN WILD-TYPE | 55 | 41 | 58 | 57 | 26 | 26 |
Figure S44. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D11V2.png)
P value = 0.015 (Fisher's exact test), Q value = 0.038
Table S45. Gene #11: '6p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
6P GAIN MUTATED | 0 | 1 | 1 | 1 | 7 |
6P GAIN WILD-TYPE | 32 | 89 | 69 | 31 | 57 |
Figure S45. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D11V5.png)
P value = 0.0385 (Fisher's exact test), Q value = 0.082
Table S46. Gene #11: '6p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
6P GAIN MUTATED | 4 | 0 | 6 |
6P GAIN WILD-TYPE | 116 | 80 | 82 |
Figure S46. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D11V8.png)
P value = 0.00515 (Fisher's exact test), Q value = 0.016
Table S47. Gene #12: '6q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
6Q GAIN MUTATED | 0 | 0 | 1 | 0 | 2 | 3 |
6Q GAIN WILD-TYPE | 56 | 42 | 58 | 57 | 27 | 26 |
Figure S47. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D12V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S48. Gene #13: '7p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
7P GAIN MUTATED | 29 | 71 | 38 | 33 |
7P GAIN WILD-TYPE | 77 | 2 | 11 | 27 |
Figure S48. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D13V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S49. Gene #13: '7p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
7P GAIN MUTATED | 28 | 20 | 45 | 50 | 7 | 11 |
7P GAIN WILD-TYPE | 28 | 22 | 14 | 7 | 22 | 18 |
Figure S49. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D13V2.png)
P value = 0.0101 (Fisher's exact test), Q value = 0.028
Table S50. Gene #13: '7p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
7P GAIN MUTATED | 45 | 59 | 26 |
7P GAIN WILD-TYPE | 30 | 23 | 30 |
Figure S50. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D13V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S51. Gene #13: '7p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
7P GAIN MUTATED | 31 | 52 | 27 | 20 |
7P GAIN WILD-TYPE | 8 | 14 | 38 | 23 |
Figure S51. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D13V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S52. Gene #13: '7p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
7P GAIN MUTATED | 28 | 77 | 38 | 13 | 15 |
7P GAIN WILD-TYPE | 4 | 13 | 32 | 19 | 49 |
Figure S52. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D13V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S53. Gene #13: '7p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
7P GAIN MUTATED | 53 | 102 | 16 |
7P GAIN WILD-TYPE | 65 | 21 | 31 |
Figure S53. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D13V6.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00066
Table S54. Gene #13: '7p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
7P GAIN MUTATED | 18 | 19 | 52 | 14 | 47 | 21 |
7P GAIN WILD-TYPE | 11 | 18 | 14 | 29 | 33 | 12 |
Figure S54. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D13V7.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00066
Table S55. Gene #13: '7p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
7P GAIN MUTATED | 62 | 63 | 46 |
7P GAIN WILD-TYPE | 58 | 17 | 42 |
Figure S55. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D13V8.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S56. Gene #13: '7p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
7P GAIN MUTATED | 32 | 59 | 37 |
7P GAIN WILD-TYPE | 39 | 16 | 39 |
Figure S56. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D13V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S57. Gene #13: '7p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
7P GAIN MUTATED | 59 | 42 | 27 |
7P GAIN WILD-TYPE | 33 | 57 | 4 |
Figure S57. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D13V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S58. Gene #14: '7q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
7Q GAIN MUTATED | 29 | 71 | 38 | 34 |
7Q GAIN WILD-TYPE | 77 | 2 | 11 | 26 |
Figure S58. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D14V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S59. Gene #14: '7q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
7Q GAIN MUTATED | 28 | 21 | 45 | 50 | 7 | 11 |
7Q GAIN WILD-TYPE | 28 | 21 | 14 | 7 | 22 | 18 |
Figure S59. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D14V2.png)
P value = 0.018 (Fisher's exact test), Q value = 0.044
Table S60. Gene #14: '7q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
7Q GAIN MUTATED | 45 | 59 | 27 |
7Q GAIN WILD-TYPE | 30 | 23 | 29 |
Figure S60. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D14V3.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S61. Gene #14: '7q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
7Q GAIN MUTATED | 31 | 52 | 28 | 20 |
7Q GAIN WILD-TYPE | 8 | 14 | 37 | 23 |
Figure S61. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D14V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S62. Gene #14: '7q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
7Q GAIN MUTATED | 28 | 77 | 39 | 13 | 15 |
7Q GAIN WILD-TYPE | 4 | 13 | 31 | 19 | 49 |
Figure S62. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D14V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S63. Gene #14: '7q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
7Q GAIN MUTATED | 54 | 102 | 16 |
7Q GAIN WILD-TYPE | 64 | 21 | 31 |
Figure S63. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D14V6.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00089
Table S64. Gene #14: '7q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
7Q GAIN MUTATED | 18 | 20 | 52 | 14 | 47 | 21 |
7Q GAIN WILD-TYPE | 11 | 17 | 14 | 29 | 33 | 12 |
Figure S64. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D14V7.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00089
Table S65. Gene #14: '7q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
7Q GAIN MUTATED | 63 | 63 | 46 |
7Q GAIN WILD-TYPE | 57 | 17 | 42 |
Figure S65. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D14V8.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00038
Table S66. Gene #14: '7q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
7Q GAIN MUTATED | 33 | 59 | 37 |
7Q GAIN WILD-TYPE | 38 | 16 | 39 |
Figure S66. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D14V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S67. Gene #14: '7q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
7Q GAIN MUTATED | 59 | 43 | 27 |
7Q GAIN WILD-TYPE | 33 | 56 | 4 |
Figure S67. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D14V10.png)
P value = 0.00491 (Fisher's exact test), Q value = 0.015
Table S68. Gene #16: '8q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
8Q GAIN MUTATED | 3 | 2 | 2 | 3 | 6 | 7 |
8Q GAIN WILD-TYPE | 53 | 40 | 57 | 54 | 23 | 22 |
Figure S68. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D16V2.png)
P value = 0.0152 (Fisher's exact test), Q value = 0.039
Table S69. Gene #16: '8q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
8Q GAIN MUTATED | 1 | 6 | 4 | 1 | 13 |
8Q GAIN WILD-TYPE | 31 | 84 | 66 | 31 | 51 |
Figure S69. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D16V5.png)
P value = 0.046 (Fisher's exact test), Q value = 0.095
Table S70. Gene #16: '8q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
8Q GAIN MUTATED | 14 | 5 | 6 |
8Q GAIN WILD-TYPE | 104 | 118 | 41 |
Figure S70. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D16V6.png)
P value = 0.0363 (Fisher's exact test), Q value = 0.079
Table S71. Gene #17: '9p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
9P GAIN MUTATED | 1 | 0 | 2 |
9P GAIN WILD-TYPE | 117 | 123 | 45 |
Figure S71. Get High-res Image Gene #17: '9p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D17V6.png)
P value = 0.00117 (Fisher's exact test), Q value = 0.0045
Table S72. Gene #18: '10p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
10P GAIN MUTATED | 0 | 0 | 0 | 1 | 1 | 4 |
10P GAIN WILD-TYPE | 56 | 42 | 59 | 56 | 28 | 25 |
Figure S72. Get High-res Image Gene #18: '10p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D18V2.png)
P value = 0.00096 (Fisher's exact test), Q value = 0.0039
Table S73. Gene #19: '10q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
10Q GAIN MUTATED | 0 | 0 | 0 | 1 | 1 | 4 |
10Q GAIN WILD-TYPE | 56 | 42 | 59 | 56 | 28 | 25 |
Figure S73. Get High-res Image Gene #19: '10q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D19V2.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00043
Table S74. Gene #20: '11p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
11P GAIN MUTATED | 1 | 3 | 0 | 0 | 1 | 6 |
11P GAIN WILD-TYPE | 55 | 39 | 59 | 57 | 28 | 23 |
Figure S74. Get High-res Image Gene #20: '11p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D20V2.png)
P value = 0.0072 (Fisher's exact test), Q value = 0.021
Table S75. Gene #20: '11p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
11P GAIN MUTATED | 0 | 2 | 8 | 0 |
11P GAIN WILD-TYPE | 39 | 64 | 57 | 43 |
Figure S75. Get High-res Image Gene #20: '11p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D20V4.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.00097
Table S76. Gene #20: '11p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
11P GAIN MUTATED | 6 | 0 | 6 |
11P GAIN WILD-TYPE | 112 | 123 | 41 |
Figure S76. Get High-res Image Gene #20: '11p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D20V6.png)
P value = 0.00172 (Fisher's exact test), Q value = 0.0063
Table S77. Gene #20: '11p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
11P GAIN MUTATED | 0 | 1 | 0 | 7 | 4 | 0 |
11P GAIN WILD-TYPE | 29 | 36 | 66 | 36 | 76 | 33 |
Figure S77. Get High-res Image Gene #20: '11p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D20V7.png)
P value = 0.0453 (Fisher's exact test), Q value = 0.094
Table S78. Gene #21: '11q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
11Q GAIN MUTATED | 3 | 0 | 2 | 5 |
11Q GAIN WILD-TYPE | 103 | 73 | 47 | 55 |
Figure S78. Get High-res Image Gene #21: '11q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D21V1.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00047
Table S79. Gene #21: '11q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
11Q GAIN MUTATED | 0 | 3 | 0 | 0 | 1 | 5 |
11Q GAIN WILD-TYPE | 56 | 39 | 59 | 57 | 28 | 24 |
Figure S79. Get High-res Image Gene #21: '11q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D21V2.png)
P value = 0.0175 (Fisher's exact test), Q value = 0.043
Table S80. Gene #21: '11q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
11Q GAIN MUTATED | 0 | 2 | 7 | 0 |
11Q GAIN WILD-TYPE | 39 | 64 | 58 | 43 |
Figure S80. Get High-res Image Gene #21: '11q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D21V4.png)
P value = 0.00367 (Fisher's exact test), Q value = 0.012
Table S81. Gene #21: '11q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
11Q GAIN MUTATED | 6 | 0 | 4 |
11Q GAIN WILD-TYPE | 112 | 123 | 43 |
Figure S81. Get High-res Image Gene #21: '11q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D21V6.png)
P value = 0.00542 (Fisher's exact test), Q value = 0.017
Table S82. Gene #21: '11q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
11Q GAIN MUTATED | 0 | 1 | 0 | 6 | 3 | 0 |
11Q GAIN WILD-TYPE | 29 | 36 | 66 | 37 | 77 | 33 |
Figure S82. Get High-res Image Gene #21: '11q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D21V7.png)
P value = 0.0211 (Fisher's exact test), Q value = 0.051
Table S83. Gene #22: '12p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
12P GAIN MUTATED | 29 | 33 | 23 | 27 |
12P GAIN WILD-TYPE | 77 | 40 | 26 | 33 |
Figure S83. Get High-res Image Gene #22: '12p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D22V1.png)
P value = 0.0285 (Fisher's exact test), Q value = 0.064
Table S84. Gene #22: '12p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
12P GAIN MUTATED | 38 | 27 | 17 |
12P GAIN WILD-TYPE | 37 | 55 | 39 |
Figure S84. Get High-res Image Gene #22: '12p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D22V3.png)
P value = 0.00099 (Fisher's exact test), Q value = 0.0039
Table S85. Gene #22: '12p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
12P GAIN MUTATED | 18 | 42 | 29 | 4 | 19 |
12P GAIN WILD-TYPE | 14 | 48 | 41 | 28 | 45 |
Figure S85. Get High-res Image Gene #22: '12p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D22V5.png)
P value = 0.03 (Fisher's exact test), Q value = 0.067
Table S86. Gene #22: '12p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
12P GAIN MUTATED | 8 | 15 | 32 | 12 | 26 | 19 |
12P GAIN WILD-TYPE | 21 | 22 | 34 | 31 | 54 | 14 |
Figure S86. Get High-res Image Gene #22: '12p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D22V7.png)
P value = 0.0269 (Fisher's exact test), Q value = 0.061
Table S87. Gene #22: '12p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
12P GAIN MUTATED | 45 | 31 | 9 |
12P GAIN WILD-TYPE | 47 | 68 | 22 |
Figure S87. Get High-res Image Gene #22: '12p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D22V10.png)
P value = 0.0213 (Fisher's exact test), Q value = 0.051
Table S88. Gene #23: '12q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
12Q GAIN MUTATED | 29 | 33 | 23 | 27 |
12Q GAIN WILD-TYPE | 77 | 40 | 26 | 33 |
Figure S88. Get High-res Image Gene #23: '12q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D23V1.png)
P value = 0.0289 (Fisher's exact test), Q value = 0.064
Table S89. Gene #23: '12q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
12Q GAIN MUTATED | 38 | 27 | 17 |
12Q GAIN WILD-TYPE | 37 | 55 | 39 |
Figure S89. Get High-res Image Gene #23: '12q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D23V3.png)
P value = 0.00076 (Fisher's exact test), Q value = 0.0033
Table S90. Gene #23: '12q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
12Q GAIN MUTATED | 18 | 42 | 29 | 4 | 19 |
12Q GAIN WILD-TYPE | 14 | 48 | 41 | 28 | 45 |
Figure S90. Get High-res Image Gene #23: '12q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D23V5.png)
P value = 0.0301 (Fisher's exact test), Q value = 0.067
Table S91. Gene #23: '12q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
12Q GAIN MUTATED | 8 | 15 | 32 | 12 | 26 | 19 |
12Q GAIN WILD-TYPE | 21 | 22 | 34 | 31 | 54 | 14 |
Figure S91. Get High-res Image Gene #23: '12q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D23V7.png)
P value = 0.0262 (Fisher's exact test), Q value = 0.059
Table S92. Gene #23: '12q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
12Q GAIN MUTATED | 45 | 31 | 9 |
12Q GAIN WILD-TYPE | 47 | 68 | 22 |
Figure S92. Get High-res Image Gene #23: '12q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D23V10.png)
P value = 0.0103 (Fisher's exact test), Q value = 0.028
Table S93. Gene #24: '13q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
13Q GAIN MUTATED | 11 | 6 | 10 | 1 |
13Q GAIN WILD-TYPE | 95 | 67 | 39 | 59 |
Figure S93. Get High-res Image Gene #24: '13q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D24V1.png)
P value = 0.0436 (Fisher's exact test), Q value = 0.091
Table S94. Gene #24: '13q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
13Q GAIN MUTATED | 8 | 1 | 7 | 4 | 6 | 2 |
13Q GAIN WILD-TYPE | 21 | 36 | 59 | 39 | 74 | 31 |
Figure S94. Get High-res Image Gene #24: '13q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D24V7.png)
P value = 0.0371 (Fisher's exact test), Q value = 0.08
Table S95. Gene #25: '14q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
14Q GAIN MUTATED | 1 | 0 | 0 | 0 | 0 | 2 |
14Q GAIN WILD-TYPE | 55 | 42 | 59 | 57 | 29 | 27 |
Figure S95. Get High-res Image Gene #25: '14q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D25V2.png)
P value = 0.0169 (Fisher's exact test), Q value = 0.042
Table S96. Gene #25: '14q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
14Q GAIN MUTATED | 0 | 0 | 3 |
14Q GAIN WILD-TYPE | 75 | 82 | 53 |
Figure S96. Get High-res Image Gene #25: '14q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D25V3.png)
P value = 0.0363 (Fisher's exact test), Q value = 0.079
Table S97. Gene #25: '14q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
14Q GAIN MUTATED | 1 | 0 | 2 |
14Q GAIN WILD-TYPE | 117 | 123 | 45 |
Figure S97. Get High-res Image Gene #25: '14q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D25V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S98. Gene #27: '16p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
16P GAIN MUTATED | 36 | 35 | 43 | 39 |
16P GAIN WILD-TYPE | 70 | 38 | 6 | 21 |
Figure S98. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D27V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S99. Gene #27: '16p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
16P GAIN MUTATED | 28 | 24 | 18 | 52 | 13 | 11 |
16P GAIN WILD-TYPE | 28 | 18 | 41 | 5 | 16 | 18 |
Figure S99. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D27V2.png)
P value = 0.00076 (Fisher's exact test), Q value = 0.0033
Table S100. Gene #27: '16p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
16P GAIN MUTATED | 27 | 35 | 23 | 30 |
16P GAIN WILD-TYPE | 12 | 31 | 42 | 13 |
Figure S100. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D27V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S101. Gene #27: '16p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
16P GAIN MUTATED | 26 | 54 | 47 | 6 | 20 |
16P GAIN WILD-TYPE | 6 | 36 | 23 | 26 | 44 |
Figure S101. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D27V5.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00027
Table S102. Gene #27: '16p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
16P GAIN MUTATED | 68 | 74 | 11 |
16P GAIN WILD-TYPE | 50 | 49 | 36 |
Figure S102. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D27V6.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00033
Table S103. Gene #27: '16p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
16P GAIN MUTATED | 19 | 23 | 49 | 16 | 31 | 15 |
16P GAIN WILD-TYPE | 10 | 14 | 17 | 27 | 49 | 18 |
Figure S103. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D27V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S104. Gene #27: '16p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
16P GAIN MUTATED | 66 | 58 | 29 |
16P GAIN WILD-TYPE | 54 | 22 | 59 |
Figure S104. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D27V8.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.00097
Table S105. Gene #27: '16p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
16P GAIN MUTATED | 45 | 45 | 25 |
16P GAIN WILD-TYPE | 26 | 30 | 51 |
Figure S105. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D27V9.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S106. Gene #27: '16p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
16P GAIN MUTATED | 65 | 37 | 13 |
16P GAIN WILD-TYPE | 27 | 62 | 18 |
Figure S106. Get High-res Image Gene #27: '16p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D27V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S107. Gene #28: '16q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
16Q GAIN MUTATED | 37 | 35 | 43 | 33 |
16Q GAIN WILD-TYPE | 69 | 38 | 6 | 27 |
Figure S107. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D28V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S108. Gene #28: '16q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
16Q GAIN MUTATED | 28 | 24 | 18 | 51 | 11 | 10 |
16Q GAIN WILD-TYPE | 28 | 18 | 41 | 6 | 18 | 19 |
Figure S108. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D28V2.png)
P value = 0.00187 (Fisher's exact test), Q value = 0.0068
Table S109. Gene #28: '16q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
16Q GAIN MUTATED | 27 | 35 | 23 | 28 |
16Q GAIN WILD-TYPE | 12 | 31 | 42 | 15 |
Figure S109. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D28V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S110. Gene #28: '16q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
16Q GAIN MUTATED | 26 | 53 | 46 | 6 | 17 |
16Q GAIN WILD-TYPE | 6 | 37 | 24 | 26 | 47 |
Figure S110. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D28V5.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.00063
Table S111. Gene #28: '16q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
16Q GAIN MUTATED | 64 | 73 | 11 |
16Q GAIN WILD-TYPE | 54 | 50 | 36 |
Figure S111. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D28V6.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S112. Gene #28: '16q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
16Q GAIN MUTATED | 18 | 22 | 49 | 16 | 29 | 14 |
16Q GAIN WILD-TYPE | 11 | 15 | 17 | 27 | 51 | 19 |
Figure S112. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D28V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S113. Gene #28: '16q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
16Q GAIN MUTATED | 62 | 58 | 28 |
16Q GAIN WILD-TYPE | 58 | 22 | 60 |
Figure S113. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D28V8.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.00063
Table S114. Gene #28: '16q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
16Q GAIN MUTATED | 43 | 44 | 23 |
16Q GAIN WILD-TYPE | 28 | 31 | 53 |
Figure S114. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D28V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S115. Gene #28: '16q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
16Q GAIN MUTATED | 65 | 33 | 12 |
16Q GAIN WILD-TYPE | 27 | 66 | 19 |
Figure S115. Get High-res Image Gene #28: '16q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D28V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S116. Gene #29: '17p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
17P GAIN MUTATED | 22 | 69 | 41 | 40 |
17P GAIN WILD-TYPE | 84 | 4 | 8 | 20 |
Figure S116. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D29V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S117. Gene #29: '17p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
17P GAIN MUTATED | 27 | 17 | 48 | 53 | 7 | 10 |
17P GAIN WILD-TYPE | 29 | 25 | 11 | 4 | 22 | 19 |
Figure S117. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D29V2.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00038
Table S118. Gene #29: '17p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
17P GAIN MUTATED | 48 | 60 | 20 |
17P GAIN WILD-TYPE | 27 | 22 | 36 |
Figure S118. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D29V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S119. Gene #29: '17p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
17P GAIN MUTATED | 31 | 51 | 28 | 18 |
17P GAIN WILD-TYPE | 8 | 15 | 37 | 25 |
Figure S119. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D29V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S120. Gene #29: '17p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
17P GAIN MUTATED | 26 | 80 | 35 | 12 | 19 |
17P GAIN WILD-TYPE | 6 | 10 | 35 | 20 | 45 |
Figure S120. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D29V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S121. Gene #29: '17p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
17P GAIN MUTATED | 54 | 108 | 10 |
17P GAIN WILD-TYPE | 64 | 15 | 37 |
Figure S121. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D29V6.png)
P value = 0.00011 (Fisher's exact test), Q value = 0.00063
Table S122. Gene #29: '17p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
17P GAIN MUTATED | 18 | 18 | 55 | 18 | 44 | 19 |
17P GAIN WILD-TYPE | 11 | 19 | 11 | 25 | 36 | 14 |
Figure S122. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D29V7.png)
P value = 0.00014 (Fisher's exact test), Q value = 0.00076
Table S123. Gene #29: '17p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
17P GAIN MUTATED | 62 | 63 | 47 |
17P GAIN WILD-TYPE | 58 | 17 | 41 |
Figure S123. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D29V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S124. Gene #29: '17p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
17P GAIN MUTATED | 34 | 63 | 30 |
17P GAIN WILD-TYPE | 37 | 12 | 46 |
Figure S124. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D29V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S125. Gene #29: '17p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
17P GAIN MUTATED | 62 | 37 | 28 |
17P GAIN WILD-TYPE | 30 | 62 | 3 |
Figure S125. Get High-res Image Gene #29: '17p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D29V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S126. Gene #30: '17q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
17Q GAIN MUTATED | 27 | 71 | 43 | 50 |
17Q GAIN WILD-TYPE | 79 | 2 | 6 | 10 |
Figure S126. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D30V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S127. Gene #30: '17q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
17Q GAIN MUTATED | 31 | 22 | 49 | 53 | 12 | 13 |
17Q GAIN WILD-TYPE | 25 | 20 | 10 | 4 | 17 | 16 |
Figure S127. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D30V2.png)
P value = 0.00083 (Fisher's exact test), Q value = 0.0035
Table S128. Gene #30: '17q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
17Q GAIN MUTATED | 53 | 63 | 26 |
17Q GAIN WILD-TYPE | 22 | 19 | 30 |
Figure S128. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D30V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S129. Gene #30: '17q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
17Q GAIN MUTATED | 35 | 53 | 33 | 21 |
17Q GAIN WILD-TYPE | 4 | 13 | 32 | 22 |
Figure S129. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D30V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S130. Gene #30: '17q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
17Q GAIN MUTATED | 28 | 81 | 41 | 13 | 28 |
17Q GAIN WILD-TYPE | 4 | 9 | 29 | 19 | 36 |
Figure S130. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D30V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S131. Gene #30: '17q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
17Q GAIN MUTATED | 68 | 108 | 15 |
17Q GAIN WILD-TYPE | 50 | 15 | 32 |
Figure S131. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D30V6.png)
P value = 0.00786 (Fisher's exact test), Q value = 0.022
Table S132. Gene #30: '17q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
17Q GAIN MUTATED | 21 | 22 | 55 | 22 | 51 | 20 |
17Q GAIN WILD-TYPE | 8 | 15 | 11 | 21 | 29 | 13 |
Figure S132. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D30V7.png)
P value = 0.00097 (Fisher's exact test), Q value = 0.0039
Table S133. Gene #30: '17q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
17Q GAIN MUTATED | 72 | 66 | 53 |
17Q GAIN WILD-TYPE | 48 | 14 | 35 |
Figure S133. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D30V8.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S134. Gene #30: '17q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
17Q GAIN MUTATED | 40 | 63 | 40 |
17Q GAIN WILD-TYPE | 31 | 12 | 36 |
Figure S134. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D30V9.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S135. Gene #30: '17q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
17Q GAIN MUTATED | 66 | 49 | 28 |
17Q GAIN WILD-TYPE | 26 | 50 | 3 |
Figure S135. Get High-res Image Gene #30: '17q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D30V10.png)
P value = 0.00381 (Fisher's exact test), Q value = 0.012
Table S136. Gene #33: '19p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
19P GAIN MUTATED | 0 | 1 | 0 | 0 | 1 | 3 |
19P GAIN WILD-TYPE | 56 | 41 | 59 | 57 | 28 | 26 |
Figure S136. Get High-res Image Gene #33: '19p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D33V2.png)
P value = 0.00995 (Fisher's exact test), Q value = 0.027
Table S137. Gene #33: '19p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
19P GAIN MUTATED | 2 | 0 | 3 |
19P GAIN WILD-TYPE | 116 | 123 | 44 |
Figure S137. Get High-res Image Gene #33: '19p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D33V6.png)
P value = 0.00378 (Fisher's exact test), Q value = 0.012
Table S138. Gene #34: '19q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
19Q GAIN MUTATED | 0 | 1 | 0 | 0 | 1 | 3 |
19Q GAIN WILD-TYPE | 56 | 41 | 59 | 57 | 28 | 26 |
Figure S138. Get High-res Image Gene #34: '19q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D34V2.png)
P value = 0.00992 (Fisher's exact test), Q value = 0.027
Table S139. Gene #34: '19q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
19Q GAIN MUTATED | 2 | 0 | 3 |
19Q GAIN WILD-TYPE | 116 | 123 | 44 |
Figure S139. Get High-res Image Gene #34: '19q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D34V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S140. Gene #35: '20p gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
20P GAIN MUTATED | 13 | 27 | 26 | 33 |
20P GAIN WILD-TYPE | 93 | 46 | 23 | 27 |
Figure S140. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D35V1.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.001
Table S141. Gene #35: '20p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
20P GAIN MUTATED | 12 | 8 | 17 | 33 | 11 | 11 |
20P GAIN WILD-TYPE | 44 | 34 | 42 | 24 | 18 | 18 |
Figure S141. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D35V2.png)
P value = 0.0259 (Fisher's exact test), Q value = 0.059
Table S142. Gene #35: '20p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
20P GAIN MUTATED | 22 | 35 | 12 |
20P GAIN WILD-TYPE | 53 | 47 | 44 |
Figure S142. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D35V3.png)
P value = 0.00265 (Fisher's exact test), Q value = 0.0093
Table S143. Gene #35: '20p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
20P GAIN MUTATED | 14 | 31 | 18 | 6 |
20P GAIN WILD-TYPE | 25 | 35 | 47 | 37 |
Figure S143. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D35V4.png)
P value = 0.00114 (Fisher's exact test), Q value = 0.0044
Table S144. Gene #35: '20p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
20P GAIN MUTATED | 10 | 45 | 21 | 4 | 19 |
20P GAIN WILD-TYPE | 22 | 45 | 49 | 28 | 45 |
Figure S144. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D35V5.png)
P value = 0.0218 (Fisher's exact test), Q value = 0.052
Table S145. Gene #35: '20p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
20P GAIN MUTATED | 35 | 53 | 11 |
20P GAIN WILD-TYPE | 83 | 70 | 36 |
Figure S145. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D35V6.png)
P value = 0.00551 (Fisher's exact test), Q value = 0.017
Table S146. Gene #35: '20p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
20P GAIN MUTATED | 6 | 12 | 36 | 10 | 25 | 10 |
20P GAIN WILD-TYPE | 23 | 25 | 30 | 33 | 55 | 23 |
Figure S146. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D35V7.png)
P value = 0.0031 (Fisher's exact test), Q value = 0.011
Table S147. Gene #35: '20p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
20P GAIN MUTATED | 34 | 40 | 25 |
20P GAIN WILD-TYPE | 86 | 40 | 63 |
Figure S147. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D35V8.png)
P value = 0.043 (Fisher's exact test), Q value = 0.09
Table S148. Gene #35: '20p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
20P GAIN MUTATED | 36 | 24 | 13 |
20P GAIN WILD-TYPE | 56 | 75 | 18 |
Figure S148. Get High-res Image Gene #35: '20p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D35V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S149. Gene #36: '20q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
20Q GAIN MUTATED | 16 | 27 | 25 | 33 |
20Q GAIN WILD-TYPE | 90 | 46 | 24 | 27 |
Figure S149. Get High-res Image Gene #36: '20q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D36V1.png)
P value = 0.00056 (Fisher's exact test), Q value = 0.0025
Table S150. Gene #36: '20q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
20Q GAIN MUTATED | 12 | 8 | 17 | 32 | 12 | 12 |
20Q GAIN WILD-TYPE | 44 | 34 | 42 | 25 | 17 | 17 |
Figure S150. Get High-res Image Gene #36: '20q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D36V2.png)
P value = 0.00762 (Fisher's exact test), Q value = 0.022
Table S151. Gene #36: '20q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
20Q GAIN MUTATED | 13 | 31 | 19 | 7 |
20Q GAIN WILD-TYPE | 26 | 35 | 46 | 36 |
Figure S151. Get High-res Image Gene #36: '20q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D36V4.png)
P value = 0.00745 (Fisher's exact test), Q value = 0.022
Table S152. Gene #36: '20q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
20Q GAIN MUTATED | 10 | 45 | 21 | 6 | 19 |
20Q GAIN WILD-TYPE | 22 | 45 | 49 | 26 | 45 |
Figure S152. Get High-res Image Gene #36: '20q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D36V5.png)
P value = 0.0127 (Fisher's exact test), Q value = 0.033
Table S153. Gene #36: '20q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
20Q GAIN MUTATED | 6 | 13 | 35 | 10 | 27 | 10 |
20Q GAIN WILD-TYPE | 23 | 24 | 31 | 33 | 53 | 23 |
Figure S153. Get High-res Image Gene #36: '20q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D36V7.png)
P value = 0.00523 (Fisher's exact test), Q value = 0.016
Table S154. Gene #36: '20q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
20Q GAIN MUTATED | 34 | 40 | 27 |
20Q GAIN WILD-TYPE | 86 | 40 | 61 |
Figure S154. Get High-res Image Gene #36: '20q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D36V8.png)
P value = 0.00097 (Fisher's exact test), Q value = 0.0039
Table S155. Gene #37: '21q gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
21Q GAIN MUTATED | 2 | 2 | 5 | 10 |
21Q GAIN WILD-TYPE | 104 | 71 | 44 | 50 |
Figure S155. Get High-res Image Gene #37: '21q gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D37V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S156. Gene #39: 'xp gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
XP GAIN MUTATED | 8 | 36 | 34 | 10 |
XP GAIN WILD-TYPE | 98 | 37 | 15 | 50 |
Figure S156. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D39V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S157. Gene #39: 'xp gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
XP GAIN MUTATED | 12 | 11 | 16 | 37 | 2 | 3 |
XP GAIN WILD-TYPE | 44 | 31 | 43 | 20 | 27 | 26 |
Figure S157. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D39V2.png)
P value = 0.00202 (Fisher's exact test), Q value = 0.0073
Table S158. Gene #39: 'xp gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
XP GAIN MUTATED | 18 | 26 | 11 | 9 |
XP GAIN WILD-TYPE | 21 | 40 | 54 | 34 |
Figure S158. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D39V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S159. Gene #39: 'xp gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
XP GAIN MUTATED | 14 | 45 | 23 | 1 | 5 |
XP GAIN WILD-TYPE | 18 | 45 | 47 | 31 | 59 |
Figure S159. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D39V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S160. Gene #39: 'xp gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
XP GAIN MUTATED | 27 | 56 | 5 |
XP GAIN WILD-TYPE | 91 | 67 | 42 |
Figure S160. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D39V6.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00043
Table S161. Gene #39: 'xp gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
XP GAIN MUTATED | 10 | 12 | 36 | 8 | 14 | 8 |
XP GAIN WILD-TYPE | 19 | 25 | 30 | 35 | 66 | 25 |
Figure S161. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D39V7.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.00097
Table S162. Gene #39: 'xp gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
XP GAIN MUTATED | 32 | 39 | 17 |
XP GAIN WILD-TYPE | 88 | 41 | 71 |
Figure S162. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D39V8.png)
P value = 2e-04 (Fisher's exact test), Q value = 0.001
Table S163. Gene #39: 'xp gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
XP GAIN MUTATED | 21 | 31 | 9 |
XP GAIN WILD-TYPE | 50 | 44 | 67 |
Figure S163. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D39V9.png)
P value = 0.00069 (Fisher's exact test), Q value = 0.003
Table S164. Gene #39: 'xp gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
XP GAIN MUTATED | 35 | 15 | 11 |
XP GAIN WILD-TYPE | 57 | 84 | 20 |
Figure S164. Get High-res Image Gene #39: 'xp gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D39V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S165. Gene #40: 'xq gain' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
XQ GAIN MUTATED | 9 | 37 | 35 | 11 |
XQ GAIN WILD-TYPE | 97 | 36 | 14 | 49 |
Figure S165. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #1: 'CN_CNMF'
![](D40V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S166. Gene #40: 'xq gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
XQ GAIN MUTATED | 12 | 11 | 16 | 37 | 4 | 4 |
XQ GAIN WILD-TYPE | 44 | 31 | 43 | 20 | 25 | 25 |
Figure S166. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D40V2.png)
P value = 0.00707 (Fisher's exact test), Q value = 0.021
Table S167. Gene #40: 'xq gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
XQ GAIN MUTATED | 18 | 26 | 13 | 9 |
XQ GAIN WILD-TYPE | 21 | 40 | 52 | 34 |
Figure S167. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D40V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S168. Gene #40: 'xq gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
XQ GAIN MUTATED | 14 | 46 | 24 | 1 | 7 |
XQ GAIN WILD-TYPE | 18 | 44 | 46 | 31 | 57 |
Figure S168. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D40V5.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S169. Gene #40: 'xq gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
XQ GAIN MUTATED | 29 | 57 | 6 |
XQ GAIN WILD-TYPE | 89 | 66 | 41 |
Figure S169. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D40V6.png)
P value = 0.00039 (Fisher's exact test), Q value = 0.0018
Table S170. Gene #40: 'xq gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
XQ GAIN MUTATED | 10 | 12 | 36 | 10 | 15 | 9 |
XQ GAIN WILD-TYPE | 19 | 25 | 30 | 33 | 65 | 24 |
Figure S170. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D40V7.png)
P value = 0.00019 (Fisher's exact test), Q value = 0.00097
Table S171. Gene #40: 'xq gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
XQ GAIN MUTATED | 35 | 39 | 18 |
XQ GAIN WILD-TYPE | 85 | 41 | 70 |
Figure S171. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D40V8.png)
P value = 0.00097 (Fisher's exact test), Q value = 0.0039
Table S172. Gene #40: 'xq gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
XQ GAIN MUTATED | 21 | 31 | 11 |
XQ GAIN WILD-TYPE | 50 | 44 | 65 |
Figure S172. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D40V9.png)
P value = 0.00302 (Fisher's exact test), Q value = 0.01
Table S173. Gene #40: 'xq gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
XQ GAIN MUTATED | 35 | 17 | 11 |
XQ GAIN WILD-TYPE | 57 | 82 | 20 |
Figure S173. Get High-res Image Gene #40: 'xq gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D40V10.png)
P value = 0.00718 (Fisher's exact test), Q value = 0.021
Table S174. Gene #41: '1p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
1P LOSS MUTATED | 12 | 1 | 7 | 10 |
1P LOSS WILD-TYPE | 94 | 72 | 42 | 50 |
Figure S174. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D41V1.png)
P value = 0.00058 (Fisher's exact test), Q value = 0.0026
Table S175. Gene #41: '1p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
1P LOSS MUTATED | 7 | 2 | 1 | 4 | 8 | 7 |
1P LOSS WILD-TYPE | 49 | 40 | 58 | 53 | 21 | 22 |
Figure S175. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D41V2.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S176. Gene #41: '1p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
1P LOSS MUTATED | 1 | 4 | 3 | 3 | 19 |
1P LOSS WILD-TYPE | 31 | 86 | 67 | 29 | 45 |
Figure S176. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D41V5.png)
P value = 0.00086 (Fisher's exact test), Q value = 0.0036
Table S177. Gene #41: '1p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
1P LOSS MUTATED | 12 | 6 | 12 |
1P LOSS WILD-TYPE | 106 | 117 | 35 |
Figure S177. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D41V6.png)
P value = 0.00516 (Fisher's exact test), Q value = 0.016
Table S178. Gene #41: '1p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
1P LOSS MUTATED | 2 | 6 | 5 | 11 | 6 | 0 |
1P LOSS WILD-TYPE | 27 | 31 | 61 | 32 | 74 | 33 |
Figure S178. Get High-res Image Gene #41: '1p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D41V7.png)
P value = 0.0478 (Fisher's exact test), Q value = 0.099
Table S179. Gene #42: '1q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
1Q LOSS MUTATED | 5 | 1 | 1 | 4 | 4 | 5 |
1Q LOSS WILD-TYPE | 51 | 41 | 58 | 53 | 25 | 24 |
Figure S179. Get High-res Image Gene #42: '1q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D42V2.png)
P value = 0.00808 (Fisher's exact test), Q value = 0.023
Table S180. Gene #42: '1q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
1Q LOSS MUTATED | 6 | 6 | 9 |
1Q LOSS WILD-TYPE | 112 | 117 | 38 |
Figure S180. Get High-res Image Gene #42: '1q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D42V6.png)
P value = 0.0128 (Fisher's exact test), Q value = 0.033
Table S181. Gene #42: '1q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
1Q LOSS MUTATED | 5 | 12 | 4 |
1Q LOSS WILD-TYPE | 115 | 68 | 84 |
Figure S181. Get High-res Image Gene #42: '1q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D42V8.png)
P value = 0.00805 (Fisher's exact test), Q value = 0.023
Table S182. Gene #43: '2p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
2P LOSS MUTATED | 1 | 0 | 0 | 0 | 3 | 1 |
2P LOSS WILD-TYPE | 55 | 42 | 59 | 57 | 26 | 28 |
Figure S182. Get High-res Image Gene #43: '2p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D43V2.png)
P value = 0.0167 (Fisher's exact test), Q value = 0.042
Table S183. Gene #43: '2p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
2P LOSS MUTATED | 0 | 0 | 3 |
2P LOSS WILD-TYPE | 75 | 82 | 53 |
Figure S183. Get High-res Image Gene #43: '2p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D43V3.png)
P value = 0.02 (Fisher's exact test), Q value = 0.049
Table S184. Gene #43: '2p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
2P LOSS MUTATED | 2 | 2 | 0 | 1 | 0 | 0 |
2P LOSS WILD-TYPE | 27 | 35 | 66 | 42 | 80 | 33 |
Figure S184. Get High-res Image Gene #43: '2p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D43V7.png)
P value = 0.037 (Fisher's exact test), Q value = 0.08
Table S185. Gene #44: '2q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
2Q LOSS MUTATED | 1 | 0 | 2 |
2Q LOSS WILD-TYPE | 117 | 123 | 45 |
Figure S185. Get High-res Image Gene #44: '2q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D44V6.png)
P value = 0.0152 (Fisher's exact test), Q value = 0.039
Table S186. Gene #44: '2q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
2Q LOSS MUTATED | 2 | 1 | 0 | 0 | 0 | 0 |
2Q LOSS WILD-TYPE | 27 | 36 | 66 | 43 | 80 | 33 |
Figure S186. Get High-res Image Gene #44: '2q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D44V7.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00027
Table S187. Gene #45: '3p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
3P LOSS MUTATED | 8 | 0 | 1 | 12 |
3P LOSS WILD-TYPE | 98 | 73 | 48 | 48 |
Figure S187. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D45V1.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00027
Table S188. Gene #45: '3p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
3P LOSS MUTATED | 5 | 4 | 0 | 0 | 8 | 3 |
3P LOSS WILD-TYPE | 51 | 38 | 59 | 57 | 21 | 26 |
Figure S188. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D45V2.png)
P value = 0.0326 (Fisher's exact test), Q value = 0.072
Table S189. Gene #45: '3p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
3P LOSS MUTATED | 3 | 3 | 11 | 1 |
3P LOSS WILD-TYPE | 36 | 63 | 54 | 42 |
Figure S189. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D45V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S190. Gene #45: '3p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
3P LOSS MUTATED | 0 | 0 | 6 | 1 | 14 |
3P LOSS WILD-TYPE | 32 | 90 | 64 | 31 | 50 |
Figure S190. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D45V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S191. Gene #45: '3p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
3P LOSS MUTATED | 17 | 0 | 4 |
3P LOSS WILD-TYPE | 101 | 123 | 43 |
Figure S191. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D45V6.png)
P value = 0.0386 (Fisher's exact test), Q value = 0.082
Table S192. Gene #45: '3p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
3P LOSS MUTATED | 1 | 3 | 1 | 8 | 6 | 2 |
3P LOSS WILD-TYPE | 28 | 34 | 65 | 35 | 74 | 31 |
Figure S192. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D45V7.png)
P value = 0.0187 (Fisher's exact test), Q value = 0.046
Table S193. Gene #45: '3p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
3P LOSS MUTATED | 6 | 15 | 0 |
3P LOSS WILD-TYPE | 86 | 84 | 31 |
Figure S193. Get High-res Image Gene #45: '3p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D45V10.png)
P value = 0.0048 (Fisher's exact test), Q value = 0.015
Table S194. Gene #46: '3q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
3Q LOSS MUTATED | 1 | 0 | 0 | 5 |
3Q LOSS WILD-TYPE | 105 | 73 | 49 | 55 |
Figure S194. Get High-res Image Gene #46: '3q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D46V1.png)
P value = 0.00318 (Fisher's exact test), Q value = 0.011
Table S195. Gene #46: '3q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
3Q LOSS MUTATED | 0 | 1 | 0 | 0 | 2 | 3 |
3Q LOSS WILD-TYPE | 56 | 41 | 59 | 57 | 27 | 26 |
Figure S195. Get High-res Image Gene #46: '3q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D46V2.png)
P value = 0.00061 (Fisher's exact test), Q value = 0.0027
Table S196. Gene #46: '3q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
3Q LOSS MUTATED | 0 | 0 | 0 | 0 | 6 |
3Q LOSS WILD-TYPE | 32 | 90 | 70 | 32 | 58 |
Figure S196. Get High-res Image Gene #46: '3q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D46V5.png)
P value = 0.00243 (Fisher's exact test), Q value = 0.0086
Table S197. Gene #46: '3q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
3Q LOSS MUTATED | 2 | 0 | 4 |
3Q LOSS WILD-TYPE | 116 | 123 | 43 |
Figure S197. Get High-res Image Gene #46: '3q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D46V6.png)
P value = 0.00081 (Fisher's exact test), Q value = 0.0035
Table S198. Gene #47: '4p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
4P LOSS MUTATED | 9 | 0 | 6 | 10 |
4P LOSS WILD-TYPE | 97 | 73 | 43 | 50 |
Figure S198. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D47V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S199. Gene #47: '4p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
4P LOSS MUTATED | 3 | 2 | 0 | 1 | 6 | 12 |
4P LOSS WILD-TYPE | 53 | 40 | 59 | 56 | 23 | 17 |
Figure S199. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D47V2.png)
P value = 0.00069 (Fisher's exact test), Q value = 0.003
Table S200. Gene #47: '4p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
4P LOSS MUTATED | 2 | 3 | 15 | 1 |
4P LOSS WILD-TYPE | 37 | 63 | 50 | 42 |
Figure S200. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D47V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S201. Gene #47: '4p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
4P LOSS MUTATED | 0 | 0 | 2 | 4 | 19 |
4P LOSS WILD-TYPE | 32 | 90 | 68 | 28 | 45 |
Figure S201. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D47V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S202. Gene #47: '4p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
4P LOSS MUTATED | 12 | 1 | 12 |
4P LOSS WILD-TYPE | 106 | 122 | 35 |
Figure S202. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D47V6.png)
P value = 0.0165 (Fisher's exact test), Q value = 0.041
Table S203. Gene #47: '4p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
4P LOSS MUTATED | 5 | 2 | 12 |
4P LOSS WILD-TYPE | 66 | 73 | 64 |
Figure S203. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D47V9.png)
P value = 0.00539 (Fisher's exact test), Q value = 0.016
Table S204. Gene #47: '4p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
4P LOSS MUTATED | 4 | 15 | 0 |
4P LOSS WILD-TYPE | 88 | 84 | 31 |
Figure S204. Get High-res Image Gene #47: '4p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D47V10.png)
P value = 0.00034 (Fisher's exact test), Q value = 0.0016
Table S205. Gene #48: '4q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
4Q LOSS MUTATED | 9 | 0 | 6 | 11 |
4Q LOSS WILD-TYPE | 97 | 73 | 43 | 49 |
Figure S205. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D48V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S206. Gene #48: '4q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
4Q LOSS MUTATED | 3 | 4 | 0 | 1 | 6 | 11 |
4Q LOSS WILD-TYPE | 53 | 38 | 59 | 56 | 23 | 18 |
Figure S206. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D48V2.png)
P value = 0.00359 (Fisher's exact test), Q value = 0.012
Table S207. Gene #48: '4q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
4Q LOSS MUTATED | 2 | 4 | 14 | 1 |
4Q LOSS WILD-TYPE | 37 | 62 | 51 | 42 |
Figure S207. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D48V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S208. Gene #48: '4q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
4Q LOSS MUTATED | 0 | 0 | 4 | 3 | 19 |
4Q LOSS WILD-TYPE | 32 | 90 | 66 | 29 | 45 |
Figure S208. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D48V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S209. Gene #48: '4q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
4Q LOSS MUTATED | 14 | 1 | 11 |
4Q LOSS WILD-TYPE | 104 | 122 | 36 |
Figure S209. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D48V6.png)
P value = 0.0364 (Fisher's exact test), Q value = 0.079
Table S210. Gene #48: '4q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
4Q LOSS MUTATED | 1 | 2 | 3 | 9 | 10 | 1 |
4Q LOSS WILD-TYPE | 28 | 35 | 63 | 34 | 70 | 32 |
Figure S210. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D48V7.png)
P value = 0.0165 (Fisher's exact test), Q value = 0.041
Table S211. Gene #48: '4q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
4Q LOSS MUTATED | 6 | 2 | 12 |
4Q LOSS WILD-TYPE | 65 | 73 | 64 |
Figure S211. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D48V9.png)
P value = 0.0031 (Fisher's exact test), Q value = 0.011
Table S212. Gene #48: '4q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
4Q LOSS MUTATED | 4 | 16 | 0 |
4Q LOSS WILD-TYPE | 88 | 83 | 31 |
Figure S212. Get High-res Image Gene #48: '4q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D48V10.png)
P value = 0.00041 (Fisher's exact test), Q value = 0.0019
Table S213. Gene #49: '5p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
5P LOSS MUTATED | 1 | 0 | 1 | 0 | 0 | 5 |
5P LOSS WILD-TYPE | 55 | 42 | 58 | 57 | 29 | 24 |
Figure S213. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D49V2.png)
P value = 0.0324 (Fisher's exact test), Q value = 0.071
Table S214. Gene #49: '5p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
5P LOSS MUTATED | 1 | 0 | 1 | 3 | 2 |
5P LOSS WILD-TYPE | 31 | 90 | 69 | 29 | 62 |
Figure S214. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D49V5.png)
P value = 0.00154 (Fisher's exact test), Q value = 0.0057
Table S215. Gene #49: '5p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
5P LOSS MUTATED | 1 | 1 | 5 |
5P LOSS WILD-TYPE | 117 | 122 | 42 |
Figure S215. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D49V6.png)
P value = 0.0499 (Fisher's exact test), Q value = 0.1
Table S216. Gene #49: '5p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
5P LOSS MUTATED | 2 | 0 | 5 |
5P LOSS WILD-TYPE | 118 | 80 | 83 |
Figure S216. Get High-res Image Gene #49: '5p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D49V8.png)
P value = 0.0395 (Fisher's exact test), Q value = 0.084
Table S217. Gene #50: '5q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
5Q LOSS MUTATED | 5 | 0 | 3 | 0 |
5Q LOSS WILD-TYPE | 101 | 73 | 46 | 60 |
Figure S217. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D50V1.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00027
Table S218. Gene #50: '5q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
5Q LOSS MUTATED | 1 | 0 | 1 | 0 | 0 | 6 |
5Q LOSS WILD-TYPE | 55 | 42 | 58 | 57 | 29 | 23 |
Figure S218. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D50V2.png)
P value = 0.00668 (Fisher's exact test), Q value = 0.02
Table S219. Gene #50: '5q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
5Q LOSS MUTATED | 1 | 0 | 1 | 4 | 2 |
5Q LOSS WILD-TYPE | 31 | 90 | 69 | 28 | 62 |
Figure S219. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D50V5.png)
P value = 0.00028 (Fisher's exact test), Q value = 0.0014
Table S220. Gene #50: '5q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
5Q LOSS MUTATED | 1 | 1 | 6 |
5Q LOSS WILD-TYPE | 117 | 122 | 41 |
Figure S220. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D50V6.png)
P value = 0.0231 (Fisher's exact test), Q value = 0.054
Table S221. Gene #50: '5q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
5Q LOSS MUTATED | 2 | 0 | 6 |
5Q LOSS WILD-TYPE | 118 | 80 | 82 |
Figure S221. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D50V8.png)
P value = 0.022 (Fisher's exact test), Q value = 0.052
Table S222. Gene #50: '5q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
5Q LOSS MUTATED | 2 | 0 | 6 |
5Q LOSS WILD-TYPE | 69 | 75 | 70 |
Figure S222. Get High-res Image Gene #50: '5q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D50V9.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00033
Table S223. Gene #51: '6p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
6P LOSS MUTATED | 4 | 1 | 0 | 2 | 5 | 8 |
6P LOSS WILD-TYPE | 52 | 41 | 59 | 55 | 24 | 21 |
Figure S223. Get High-res Image Gene #51: '6p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D51V2.png)
P value = 0.0406 (Fisher's exact test), Q value = 0.086
Table S224. Gene #51: '6p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
6P LOSS MUTATED | 2 | 5 | 9 | 0 |
6P LOSS WILD-TYPE | 37 | 61 | 56 | 43 |
Figure S224. Get High-res Image Gene #51: '6p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D51V4.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S225. Gene #51: '6p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
6P LOSS MUTATED | 0 | 3 | 2 | 1 | 15 |
6P LOSS WILD-TYPE | 32 | 87 | 68 | 31 | 49 |
Figure S225. Get High-res Image Gene #51: '6p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D51V5.png)
P value = 0.00017 (Fisher's exact test), Q value = 0.00089
Table S226. Gene #51: '6p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
6P LOSS MUTATED | 6 | 4 | 11 |
6P LOSS WILD-TYPE | 112 | 119 | 36 |
Figure S226. Get High-res Image Gene #51: '6p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D51V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S227. Gene #52: '6q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
6Q LOSS MUTATED | 6 | 2 | 0 | 2 | 8 | 8 |
6Q LOSS WILD-TYPE | 50 | 40 | 59 | 55 | 21 | 21 |
Figure S227. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D52V2.png)
P value = 0.0213 (Fisher's exact test), Q value = 0.051
Table S228. Gene #52: '6q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
6Q LOSS MUTATED | 3 | 5 | 13 | 1 |
6Q LOSS WILD-TYPE | 36 | 61 | 52 | 42 |
Figure S228. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D52V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S229. Gene #52: '6q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
6Q LOSS MUTATED | 0 | 2 | 5 | 2 | 18 |
6Q LOSS WILD-TYPE | 32 | 88 | 65 | 30 | 46 |
Figure S229. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D52V5.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00027
Table S230. Gene #52: '6q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
6Q LOSS MUTATED | 12 | 3 | 12 |
6Q LOSS WILD-TYPE | 106 | 120 | 35 |
Figure S230. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D52V6.png)
P value = 0.0308 (Fisher's exact test), Q value = 0.068
Table S231. Gene #52: '6q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
6Q LOSS MUTATED | 3 | 5 | 4 | 9 | 6 | 0 |
6Q LOSS WILD-TYPE | 26 | 32 | 62 | 34 | 74 | 33 |
Figure S231. Get High-res Image Gene #52: '6q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D52V7.png)
P value = 0.00436 (Fisher's exact test), Q value = 0.014
Table S232. Gene #53: '8p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
8P LOSS MUTATED | 0 | 2 | 2 | 2 | 10 |
8P LOSS WILD-TYPE | 32 | 88 | 68 | 30 | 54 |
Figure S232. Get High-res Image Gene #53: '8p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D53V5.png)
P value = 0.00905 (Fisher's exact test), Q value = 0.025
Table S233. Gene #53: '8p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
8P LOSS MUTATED | 6 | 3 | 7 |
8P LOSS WILD-TYPE | 112 | 120 | 40 |
Figure S233. Get High-res Image Gene #53: '8p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D53V6.png)
P value = 0.0485 (Fisher's exact test), Q value = 0.1
Table S234. Gene #54: '8q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
8Q LOSS MUTATED | 3 | 0 | 0 | 1 | 1 | 3 |
8Q LOSS WILD-TYPE | 53 | 42 | 59 | 56 | 28 | 26 |
Figure S234. Get High-res Image Gene #54: '8q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D54V2.png)
P value = 0.00485 (Fisher's exact test), Q value = 0.015
Table S235. Gene #54: '8q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
8Q LOSS MUTATED | 0 | 0 | 1 | 2 | 6 |
8Q LOSS WILD-TYPE | 32 | 90 | 69 | 30 | 58 |
Figure S235. Get High-res Image Gene #54: '8q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D54V5.png)
P value = 0.00084 (Fisher's exact test), Q value = 0.0036
Table S236. Gene #54: '8q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
8Q LOSS MUTATED | 2 | 1 | 6 |
8Q LOSS WILD-TYPE | 116 | 122 | 41 |
Figure S236. Get High-res Image Gene #54: '8q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D54V6.png)
P value = 0.00033 (Fisher's exact test), Q value = 0.0016
Table S237. Gene #55: '9p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
9P LOSS MUTATED | 16 | 1 | 3 | 13 |
9P LOSS WILD-TYPE | 90 | 72 | 46 | 47 |
Figure S237. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D55V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S238. Gene #55: '9p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
9P LOSS MUTATED | 8 | 3 | 0 | 0 | 8 | 11 |
9P LOSS WILD-TYPE | 48 | 39 | 59 | 57 | 21 | 18 |
Figure S238. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D55V2.png)
P value = 0.0158 (Fisher's exact test), Q value = 0.04
Table S239. Gene #55: '9p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
9P LOSS MUTATED | 3 | 4 | 15 | 3 |
9P LOSS WILD-TYPE | 36 | 62 | 50 | 40 |
Figure S239. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D55V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S240. Gene #55: '9p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
9P LOSS MUTATED | 0 | 0 | 4 | 4 | 25 |
9P LOSS WILD-TYPE | 32 | 90 | 66 | 28 | 39 |
Figure S240. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D55V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S241. Gene #55: '9p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
9P LOSS MUTATED | 19 | 0 | 14 |
9P LOSS WILD-TYPE | 99 | 123 | 33 |
Figure S241. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D55V6.png)
P value = 0.0181 (Fisher's exact test), Q value = 0.044
Table S242. Gene #55: '9p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
9P LOSS MUTATED | 4 | 4 | 3 | 11 | 10 | 1 |
9P LOSS WILD-TYPE | 25 | 33 | 63 | 32 | 70 | 32 |
Figure S242. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D55V7.png)
P value = 0.0256 (Fisher's exact test), Q value = 0.059
Table S243. Gene #55: '9p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
9P LOSS MUTATED | 9 | 4 | 15 |
9P LOSS WILD-TYPE | 62 | 71 | 61 |
Figure S243. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D55V9.png)
P value = 0.00095 (Fisher's exact test), Q value = 0.0039
Table S244. Gene #55: '9p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
9P LOSS MUTATED | 7 | 21 | 0 |
9P LOSS WILD-TYPE | 85 | 78 | 31 |
Figure S244. Get High-res Image Gene #55: '9p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D55V10.png)
P value = 0.00148 (Fisher's exact test), Q value = 0.0055
Table S245. Gene #56: '9q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
9Q LOSS MUTATED | 17 | 1 | 5 | 11 |
9Q LOSS WILD-TYPE | 89 | 72 | 44 | 49 |
Figure S245. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D56V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S246. Gene #56: '9q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
9Q LOSS MUTATED | 8 | 2 | 0 | 0 | 7 | 14 |
9Q LOSS WILD-TYPE | 48 | 40 | 59 | 57 | 22 | 15 |
Figure S246. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D56V2.png)
P value = 0.00479 (Fisher's exact test), Q value = 0.015
Table S247. Gene #56: '9q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
9Q LOSS MUTATED | 3 | 3 | 16 | 4 |
9Q LOSS WILD-TYPE | 36 | 63 | 49 | 39 |
Figure S247. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D56V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S248. Gene #56: '9q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
9Q LOSS MUTATED | 0 | 0 | 4 | 5 | 25 |
9Q LOSS WILD-TYPE | 32 | 90 | 66 | 27 | 39 |
Figure S248. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D56V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S249. Gene #56: '9q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
9Q LOSS MUTATED | 17 | 0 | 17 |
9Q LOSS WILD-TYPE | 101 | 123 | 30 |
Figure S249. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D56V6.png)
P value = 0.0423 (Fisher's exact test), Q value = 0.089
Table S250. Gene #56: '9q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
9Q LOSS MUTATED | 5 | 4 | 3 | 9 | 12 | 1 |
9Q LOSS WILD-TYPE | 24 | 33 | 63 | 34 | 68 | 32 |
Figure S250. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D56V7.png)
P value = 0.00915 (Fisher's exact test), Q value = 0.025
Table S251. Gene #56: '9q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
9Q LOSS MUTATED | 9 | 4 | 17 |
9Q LOSS WILD-TYPE | 62 | 71 | 59 |
Figure S251. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D56V9.png)
P value = 0.00041 (Fisher's exact test), Q value = 0.0019
Table S252. Gene #56: '9q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
9Q LOSS MUTATED | 7 | 23 | 0 |
9Q LOSS WILD-TYPE | 85 | 76 | 31 |
Figure S252. Get High-res Image Gene #56: '9q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D56V10.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00066
Table S253. Gene #57: '10p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
10P LOSS MUTATED | 1 | 3 | 0 | 1 | 6 | 4 |
10P LOSS WILD-TYPE | 55 | 39 | 59 | 56 | 23 | 25 |
Figure S253. Get High-res Image Gene #57: '10p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D57V2.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00047
Table S254. Gene #57: '10p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
10P LOSS MUTATED | 0 | 0 | 4 | 1 | 12 |
10P LOSS WILD-TYPE | 32 | 90 | 66 | 31 | 52 |
Figure S254. Get High-res Image Gene #57: '10p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D57V5.png)
P value = 0.0016 (Fisher's exact test), Q value = 0.0059
Table S255. Gene #57: '10p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
10P LOSS MUTATED | 11 | 1 | 5 |
10P LOSS WILD-TYPE | 107 | 122 | 42 |
Figure S255. Get High-res Image Gene #57: '10p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D57V6.png)
P value = 0.0127 (Fisher's exact test), Q value = 0.033
Table S256. Gene #57: '10p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
10P LOSS MUTATED | 1 | 3 | 0 | 7 | 5 | 1 |
10P LOSS WILD-TYPE | 28 | 34 | 66 | 36 | 75 | 32 |
Figure S256. Get High-res Image Gene #57: '10p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D57V7.png)
P value = 0.0037 (Fisher's exact test), Q value = 0.012
Table S257. Gene #57: '10p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
10P LOSS MUTATED | 1 | 11 | 0 |
10P LOSS WILD-TYPE | 91 | 88 | 31 |
Figure S257. Get High-res Image Gene #57: '10p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D57V10.png)
P value = 0.00016 (Fisher's exact test), Q value = 0.00086
Table S258. Gene #58: '10q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
10Q LOSS MUTATED | 2 | 3 | 0 | 1 | 7 | 4 |
10Q LOSS WILD-TYPE | 54 | 39 | 59 | 56 | 22 | 25 |
Figure S258. Get High-res Image Gene #58: '10q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D58V2.png)
P value = 0.0234 (Fisher's exact test), Q value = 0.054
Table S259. Gene #58: '10q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
10Q LOSS MUTATED | 1 | 4 | 9 | 0 |
10Q LOSS WILD-TYPE | 38 | 62 | 56 | 43 |
Figure S259. Get High-res Image Gene #58: '10q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D58V4.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S260. Gene #58: '10q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
10Q LOSS MUTATED | 0 | 0 | 4 | 1 | 13 |
10Q LOSS WILD-TYPE | 32 | 90 | 66 | 31 | 51 |
Figure S260. Get High-res Image Gene #58: '10q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D58V5.png)
P value = 0.00104 (Fisher's exact test), Q value = 0.0041
Table S261. Gene #58: '10q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
10Q LOSS MUTATED | 13 | 1 | 4 |
10Q LOSS WILD-TYPE | 105 | 122 | 43 |
Figure S261. Get High-res Image Gene #58: '10q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D58V6.png)
P value = 0.0122 (Fisher's exact test), Q value = 0.032
Table S262. Gene #58: '10q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
10Q LOSS MUTATED | 1 | 3 | 0 | 7 | 6 | 1 |
10Q LOSS WILD-TYPE | 28 | 34 | 66 | 36 | 74 | 32 |
Figure S262. Get High-res Image Gene #58: '10q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D58V7.png)
P value = 0.0225 (Fisher's exact test), Q value = 0.053
Table S263. Gene #58: '10q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
10Q LOSS MUTATED | 4 | 1 | 9 |
10Q LOSS WILD-TYPE | 67 | 74 | 67 |
Figure S263. Get High-res Image Gene #58: '10q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D58V9.png)
P value = 0.00094 (Fisher's exact test), Q value = 0.0039
Table S264. Gene #58: '10q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
10Q LOSS MUTATED | 1 | 13 | 0 |
10Q LOSS WILD-TYPE | 91 | 86 | 31 |
Figure S264. Get High-res Image Gene #58: '10q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D58V10.png)
P value = 0.0125 (Fisher's exact test), Q value = 0.033
Table S265. Gene #59: '11p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
11P LOSS MUTATED | 8 | 0 | 2 | 7 |
11P LOSS WILD-TYPE | 98 | 73 | 47 | 53 |
Figure S265. Get High-res Image Gene #59: '11p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D59V1.png)
P value = 0.00748 (Fisher's exact test), Q value = 0.022
Table S266. Gene #59: '11p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
11P LOSS MUTATED | 3 | 2 | 0 | 2 | 5 | 4 |
11P LOSS WILD-TYPE | 53 | 40 | 59 | 55 | 24 | 25 |
Figure S266. Get High-res Image Gene #59: '11p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D59V2.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S267. Gene #59: '11p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
11P LOSS MUTATED | 0 | 0 | 3 | 3 | 11 |
11P LOSS WILD-TYPE | 32 | 90 | 67 | 29 | 53 |
Figure S267. Get High-res Image Gene #59: '11p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D59V5.png)
P value = 0.00416 (Fisher's exact test), Q value = 0.014
Table S268. Gene #59: '11p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
11P LOSS MUTATED | 8 | 2 | 7 |
11P LOSS WILD-TYPE | 110 | 121 | 40 |
Figure S268. Get High-res Image Gene #59: '11p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D59V6.png)
P value = 0.0286 (Fisher's exact test), Q value = 0.064
Table S269. Gene #59: '11p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
11P LOSS MUTATED | 3 | 2 | 10 |
11P LOSS WILD-TYPE | 68 | 73 | 66 |
Figure S269. Get High-res Image Gene #59: '11p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D59V9.png)
P value = 0.0136 (Fisher's exact test), Q value = 0.035
Table S270. Gene #59: '11p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
11P LOSS MUTATED | 3 | 12 | 0 |
11P LOSS WILD-TYPE | 89 | 87 | 31 |
Figure S270. Get High-res Image Gene #59: '11p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D59V10.png)
P value = 0.0463 (Fisher's exact test), Q value = 0.096
Table S271. Gene #60: '11q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
11Q LOSS MUTATED | 9 | 1 | 3 | 8 |
11Q LOSS WILD-TYPE | 97 | 72 | 46 | 52 |
Figure S271. Get High-res Image Gene #60: '11q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D60V1.png)
P value = 0.00096 (Fisher's exact test), Q value = 0.0039
Table S272. Gene #60: '11q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
11Q LOSS MUTATED | 5 | 3 | 0 | 2 | 7 | 4 |
11Q LOSS WILD-TYPE | 51 | 39 | 59 | 55 | 22 | 25 |
Figure S272. Get High-res Image Gene #60: '11q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D60V2.png)
P value = 0.0122 (Fisher's exact test), Q value = 0.032
Table S273. Gene #60: '11q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
11Q LOSS MUTATED | 3 | 1 | 11 | 3 |
11Q LOSS WILD-TYPE | 36 | 65 | 54 | 40 |
Figure S273. Get High-res Image Gene #60: '11q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D60V4.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S274. Gene #60: '11q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
11Q LOSS MUTATED | 0 | 0 | 6 | 2 | 13 |
11Q LOSS WILD-TYPE | 32 | 90 | 64 | 30 | 51 |
Figure S274. Get High-res Image Gene #60: '11q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D60V5.png)
P value = 0.00206 (Fisher's exact test), Q value = 0.0074
Table S275. Gene #60: '11q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
11Q LOSS MUTATED | 13 | 2 | 6 |
11Q LOSS WILD-TYPE | 105 | 121 | 41 |
Figure S275. Get High-res Image Gene #60: '11q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D60V6.png)
P value = 0.0443 (Fisher's exact test), Q value = 0.092
Table S276. Gene #60: '11q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
11Q LOSS MUTATED | 6 | 13 | 0 |
11Q LOSS WILD-TYPE | 86 | 86 | 31 |
Figure S276. Get High-res Image Gene #60: '11q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D60V10.png)
P value = 0.00061 (Fisher's exact test), Q value = 0.0027
Table S277. Gene #61: '13q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
13Q LOSS MUTATED | 5 | 1 | 8 | 10 |
13Q LOSS WILD-TYPE | 101 | 72 | 41 | 50 |
Figure S277. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D61V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S278. Gene #61: '13q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
13Q LOSS MUTATED | 3 | 1 | 0 | 2 | 4 | 13 |
13Q LOSS WILD-TYPE | 53 | 41 | 59 | 55 | 25 | 16 |
Figure S278. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D61V2.png)
P value = 0.00139 (Fisher's exact test), Q value = 0.0053
Table S279. Gene #61: '13q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
13Q LOSS MUTATED | 4 | 2 | 14 | 1 |
13Q LOSS WILD-TYPE | 35 | 64 | 51 | 42 |
Figure S279. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D61V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S280. Gene #61: '13q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
13Q LOSS MUTATED | 0 | 1 | 0 | 4 | 19 |
13Q LOSS WILD-TYPE | 32 | 89 | 70 | 28 | 45 |
Figure S280. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D61V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S281. Gene #61: '13q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
13Q LOSS MUTATED | 8 | 2 | 14 |
13Q LOSS WILD-TYPE | 110 | 121 | 33 |
Figure S281. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D61V6.png)
P value = 0.0367 (Fisher's exact test), Q value = 0.079
Table S282. Gene #61: '13q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
13Q LOSS MUTATED | 0 | 1 | 4 | 6 | 12 | 1 |
13Q LOSS WILD-TYPE | 29 | 36 | 62 | 37 | 68 | 32 |
Figure S282. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D61V7.png)
P value = 0.0104 (Fisher's exact test), Q value = 0.028
Table S283. Gene #61: '13q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
13Q LOSS MUTATED | 4 | 7 | 13 |
13Q LOSS WILD-TYPE | 116 | 73 | 75 |
Figure S283. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D61V8.png)
P value = 0.00763 (Fisher's exact test), Q value = 0.022
Table S284. Gene #61: '13q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
13Q LOSS MUTATED | 3 | 3 | 13 |
13Q LOSS WILD-TYPE | 68 | 72 | 63 |
Figure S284. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D61V9.png)
P value = 0.00508 (Fisher's exact test), Q value = 0.016
Table S285. Gene #61: '13q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
13Q LOSS MUTATED | 4 | 15 | 0 |
13Q LOSS WILD-TYPE | 88 | 84 | 31 |
Figure S285. Get High-res Image Gene #61: '13q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D61V10.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00027
Table S286. Gene #62: '14q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
14Q LOSS MUTATED | 20 | 1 | 8 | 18 |
14Q LOSS WILD-TYPE | 86 | 72 | 41 | 42 |
Figure S286. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D62V1.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00033
Table S287. Gene #62: '14q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
14Q LOSS MUTATED | 14 | 3 | 2 | 4 | 9 | 11 |
14Q LOSS WILD-TYPE | 42 | 39 | 57 | 53 | 20 | 18 |
Figure S287. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D62V2.png)
P value = 0.00563 (Fisher's exact test), Q value = 0.017
Table S288. Gene #62: '14q loss' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
14Q LOSS MUTATED | 20 | 8 | 5 |
14Q LOSS WILD-TYPE | 55 | 74 | 51 |
Figure S288. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D62V3.png)
P value = 7e-05 (Fisher's exact test), Q value = 0.00043
Table S289. Gene #62: '14q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
14Q LOSS MUTATED | 7 | 5 | 20 | 1 |
14Q LOSS WILD-TYPE | 32 | 61 | 45 | 42 |
Figure S289. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D62V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S290. Gene #62: '14q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
14Q LOSS MUTATED | 3 | 3 | 7 | 7 | 27 |
14Q LOSS WILD-TYPE | 29 | 87 | 63 | 25 | 37 |
Figure S290. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D62V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S291. Gene #62: '14q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
14Q LOSS MUTATED | 22 | 6 | 19 |
14Q LOSS WILD-TYPE | 96 | 117 | 28 |
Figure S291. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D62V6.png)
P value = 0.0405 (Fisher's exact test), Q value = 0.086
Table S292. Gene #62: '14q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
14Q LOSS MUTATED | 2 | 5 | 7 | 13 | 17 | 3 |
14Q LOSS WILD-TYPE | 27 | 32 | 59 | 30 | 63 | 30 |
Figure S292. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D62V7.png)
P value = 0.019 (Fisher's exact test), Q value = 0.046
Table S293. Gene #62: '14q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
14Q LOSS MUTATED | 11 | 6 | 19 |
14Q LOSS WILD-TYPE | 60 | 69 | 57 |
Figure S293. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D62V9.png)
P value = 0.00273 (Fisher's exact test), Q value = 0.0095
Table S294. Gene #62: '14q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
14Q LOSS MUTATED | 10 | 25 | 1 |
14Q LOSS WILD-TYPE | 82 | 74 | 30 |
Figure S294. Get High-res Image Gene #62: '14q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D62V10.png)
P value = 0.0223 (Fisher's exact test), Q value = 0.053
Table S295. Gene #63: '15q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
15Q LOSS MUTATED | 13 | 2 | 5 | 11 |
15Q LOSS WILD-TYPE | 93 | 71 | 44 | 49 |
Figure S295. Get High-res Image Gene #63: '15q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D63V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
Table S296. Gene #63: '15q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
15Q LOSS MUTATED | 10 | 2 | 1 | 3 | 3 | 11 |
15Q LOSS WILD-TYPE | 46 | 40 | 58 | 54 | 26 | 18 |
Figure S296. Get High-res Image Gene #63: '15q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D63V2.png)
P value = 0.0288 (Fisher's exact test), Q value = 0.064
Table S297. Gene #63: '15q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
15Q LOSS MUTATED | 3 | 5 | 15 | 3 |
15Q LOSS WILD-TYPE | 36 | 61 | 50 | 40 |
Figure S297. Get High-res Image Gene #63: '15q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D63V4.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00047
Table S298. Gene #63: '15q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
15Q LOSS MUTATED | 1 | 3 | 5 | 5 | 17 |
15Q LOSS WILD-TYPE | 31 | 87 | 65 | 27 | 47 |
Figure S298. Get High-res Image Gene #63: '15q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D63V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S299. Gene #63: '15q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
15Q LOSS MUTATED | 12 | 4 | 15 |
15Q LOSS WILD-TYPE | 106 | 119 | 32 |
Figure S299. Get High-res Image Gene #63: '15q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D63V6.png)
P value = 0.0208 (Fisher's exact test), Q value = 0.05
Table S300. Gene #63: '15q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
15Q LOSS MUTATED | 3 | 4 | 3 | 8 | 13 | 0 |
15Q LOSS WILD-TYPE | 26 | 33 | 63 | 35 | 67 | 33 |
Figure S300. Get High-res Image Gene #63: '15q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D63V7.png)
P value = 0.0252 (Fisher's exact test), Q value = 0.058
Table S301. Gene #63: '15q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
15Q LOSS MUTATED | 9 | 16 | 0 |
15Q LOSS WILD-TYPE | 83 | 83 | 31 |
Figure S301. Get High-res Image Gene #63: '15q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D63V10.png)
P value = 0.00334 (Fisher's exact test), Q value = 0.011
Table S302. Gene #64: '16p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
16P LOSS MUTATED | 0 | 1 | 0 | 0 | 0 | 3 |
16P LOSS WILD-TYPE | 56 | 41 | 59 | 57 | 29 | 26 |
Figure S302. Get High-res Image Gene #64: '16p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D64V2.png)
P value = 0.00729 (Fisher's exact test), Q value = 0.021
Table S303. Gene #64: '16p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
16P LOSS MUTATED | 1 | 0 | 3 |
16P LOSS WILD-TYPE | 117 | 123 | 44 |
Figure S303. Get High-res Image Gene #64: '16p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D64V6.png)
P value = 0.0131 (Fisher's exact test), Q value = 0.034
Table S304. Gene #65: '16q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
16Q LOSS MUTATED | 1 | 1 | 0 | 0 | 2 | 3 |
16Q LOSS WILD-TYPE | 55 | 41 | 59 | 57 | 27 | 26 |
Figure S304. Get High-res Image Gene #65: '16q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D65V2.png)
P value = 0.00145 (Fisher's exact test), Q value = 0.0054
Table S305. Gene #65: '16q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
16Q LOSS MUTATED | 0 | 0 | 0 | 1 | 6 |
16Q LOSS WILD-TYPE | 32 | 90 | 70 | 31 | 58 |
Figure S305. Get High-res Image Gene #65: '16q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D65V5.png)
P value = 0.0131 (Fisher's exact test), Q value = 0.034
Table S306. Gene #65: '16q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
16Q LOSS MUTATED | 4 | 0 | 3 |
16Q LOSS WILD-TYPE | 114 | 123 | 44 |
Figure S306. Get High-res Image Gene #65: '16q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D65V6.png)
P value = 0.00332 (Fisher's exact test), Q value = 0.011
Table S307. Gene #66: '17p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
17P LOSS MUTATED | 4 | 1 | 0 | 8 |
17P LOSS WILD-TYPE | 102 | 72 | 49 | 52 |
Figure S307. Get High-res Image Gene #66: '17p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D66V1.png)
P value = 0.00026 (Fisher's exact test), Q value = 0.0013
Table S308. Gene #66: '17p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
17P LOSS MUTATED | 2 | 2 | 0 | 0 | 2 | 6 |
17P LOSS WILD-TYPE | 54 | 40 | 59 | 57 | 27 | 23 |
Figure S308. Get High-res Image Gene #66: '17p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D66V2.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00066
Table S309. Gene #66: '17p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
17P LOSS MUTATED | 0 | 0 | 2 | 1 | 10 |
17P LOSS WILD-TYPE | 32 | 90 | 68 | 31 | 54 |
Figure S309. Get High-res Image Gene #66: '17p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D66V5.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.001
Table S310. Gene #66: '17p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
17P LOSS MUTATED | 7 | 0 | 6 |
17P LOSS WILD-TYPE | 111 | 123 | 41 |
Figure S310. Get High-res Image Gene #66: '17p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D66V6.png)
P value = 0.00625 (Fisher's exact test), Q value = 0.019
Table S311. Gene #66: '17p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
17P LOSS MUTATED | 3 | 0 | 8 |
17P LOSS WILD-TYPE | 68 | 75 | 68 |
Figure S311. Get High-res Image Gene #66: '17p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D66V9.png)
P value = 0.00809 (Fisher's exact test), Q value = 0.023
Table S312. Gene #66: '17p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
17P LOSS MUTATED | 1 | 10 | 0 |
17P LOSS WILD-TYPE | 91 | 89 | 31 |
Figure S312. Get High-res Image Gene #66: '17p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D66V10.png)
P value = 0.0206 (Fisher's exact test), Q value = 0.05
Table S313. Gene #67: '18p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
18P LOSS MUTATED | 18 | 4 | 6 | 14 |
18P LOSS WILD-TYPE | 88 | 69 | 43 | 46 |
Figure S313. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D67V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S314. Gene #67: '18p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
18P LOSS MUTATED | 5 | 9 | 4 | 2 | 7 | 13 |
18P LOSS WILD-TYPE | 51 | 33 | 55 | 55 | 22 | 16 |
Figure S314. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D67V2.png)
P value = 0.00213 (Fisher's exact test), Q value = 0.0076
Table S315. Gene #67: '18p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
18P LOSS MUTATED | 15 | 4 | 13 |
18P LOSS WILD-TYPE | 60 | 78 | 43 |
Figure S315. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D67V3.png)
P value = 0.00461 (Fisher's exact test), Q value = 0.015
Table S316. Gene #67: '18p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
18P LOSS MUTATED | 5 | 3 | 17 | 7 |
18P LOSS WILD-TYPE | 34 | 63 | 48 | 36 |
Figure S316. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D67V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S317. Gene #67: '18p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
18P LOSS MUTATED | 1 | 2 | 11 | 7 | 21 |
18P LOSS WILD-TYPE | 31 | 88 | 59 | 25 | 43 |
Figure S317. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D67V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S318. Gene #67: '18p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
18P LOSS MUTATED | 24 | 3 | 15 |
18P LOSS WILD-TYPE | 94 | 120 | 32 |
Figure S318. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D67V6.png)
P value = 0.00141 (Fisher's exact test), Q value = 0.0053
Table S319. Gene #67: '18p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
18P LOSS MUTATED | 1 | 7 | 3 | 10 | 19 | 2 |
18P LOSS WILD-TYPE | 28 | 30 | 63 | 33 | 61 | 31 |
Figure S319. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D67V7.png)
P value = 0.00094 (Fisher's exact test), Q value = 0.0039
Table S320. Gene #67: '18p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
18P LOSS MUTATED | 19 | 3 | 20 |
18P LOSS WILD-TYPE | 101 | 77 | 68 |
Figure S320. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D67V8.png)
P value = 0.0249 (Fisher's exact test), Q value = 0.057
Table S321. Gene #67: '18p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
18P LOSS MUTATED | 9 | 8 | 20 |
18P LOSS WILD-TYPE | 62 | 67 | 56 |
Figure S321. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D67V9.png)
P value = 0.0231 (Fisher's exact test), Q value = 0.054
Table S322. Gene #67: '18p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
18P LOSS MUTATED | 11 | 24 | 2 |
18P LOSS WILD-TYPE | 81 | 75 | 29 |
Figure S322. Get High-res Image Gene #67: '18p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D67V10.png)
P value = 0.00109 (Fisher's exact test), Q value = 0.0043
Table S323. Gene #68: '18q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
18Q LOSS MUTATED | 20 | 3 | 5 | 16 |
18Q LOSS WILD-TYPE | 86 | 70 | 44 | 44 |
Figure S323. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D68V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S324. Gene #68: '18q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
18Q LOSS MUTATED | 6 | 9 | 3 | 2 | 10 | 12 |
18Q LOSS WILD-TYPE | 50 | 33 | 56 | 55 | 19 | 17 |
Figure S324. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D68V2.png)
P value = 0.00622 (Fisher's exact test), Q value = 0.019
Table S325. Gene #68: '18q loss' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
18Q LOSS MUTATED | 15 | 5 | 13 |
18Q LOSS WILD-TYPE | 60 | 77 | 43 |
Figure S325. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D68V3.png)
P value = 0.00046 (Fisher's exact test), Q value = 0.0021
Table S326. Gene #68: '18q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
18Q LOSS MUTATED | 5 | 2 | 19 | 7 |
18Q LOSS WILD-TYPE | 34 | 64 | 46 | 36 |
Figure S326. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D68V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S327. Gene #68: '18q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
18Q LOSS MUTATED | 1 | 1 | 12 | 7 | 23 |
18Q LOSS WILD-TYPE | 31 | 89 | 58 | 25 | 41 |
Figure S327. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D68V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S328. Gene #68: '18q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
18Q LOSS MUTATED | 27 | 3 | 14 |
18Q LOSS WILD-TYPE | 91 | 120 | 33 |
Figure S328. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D68V6.png)
P value = 0.00136 (Fisher's exact test), Q value = 0.0052
Table S329. Gene #68: '18q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
18Q LOSS MUTATED | 1 | 7 | 3 | 11 | 19 | 3 |
18Q LOSS WILD-TYPE | 28 | 30 | 63 | 32 | 61 | 30 |
Figure S329. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D68V7.png)
P value = 0.00037 (Fisher's exact test), Q value = 0.0018
Table S330. Gene #68: '18q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
18Q LOSS MUTATED | 20 | 3 | 21 |
18Q LOSS WILD-TYPE | 100 | 77 | 67 |
Figure S330. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D68V8.png)
P value = 0.0222 (Fisher's exact test), Q value = 0.053
Table S331. Gene #68: '18q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
18Q LOSS MUTATED | 11 | 8 | 21 |
18Q LOSS WILD-TYPE | 60 | 67 | 55 |
Figure S331. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D68V9.png)
P value = 0.00492 (Fisher's exact test), Q value = 0.015
Table S332. Gene #68: '18q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
18Q LOSS MUTATED | 11 | 27 | 2 |
18Q LOSS WILD-TYPE | 81 | 72 | 29 |
Figure S332. Get High-res Image Gene #68: '18q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D68V10.png)
P value = 0.00046 (Fisher's exact test), Q value = 0.0021
Table S333. Gene #69: '19p loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
19P LOSS MUTATED | 3 | 0 | 4 | 9 |
19P LOSS WILD-TYPE | 103 | 73 | 45 | 51 |
Figure S333. Get High-res Image Gene #69: '19p loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D69V1.png)
P value = 0.00151 (Fisher's exact test), Q value = 0.0056
Table S334. Gene #69: '19p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
19P LOSS MUTATED | 2 | 3 | 0 | 3 | 7 | 1 |
19P LOSS WILD-TYPE | 54 | 39 | 59 | 54 | 22 | 28 |
Figure S334. Get High-res Image Gene #69: '19p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D69V2.png)
P value = 0.00191 (Fisher's exact test), Q value = 0.0069
Table S335. Gene #69: '19p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
19P LOSS MUTATED | 0 | 0 | 7 | 2 | 7 |
19P LOSS WILD-TYPE | 32 | 90 | 63 | 30 | 57 |
Figure S335. Get High-res Image Gene #69: '19p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D69V5.png)
P value = 0.0103 (Fisher's exact test), Q value = 0.028
Table S336. Gene #69: '19p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
19P LOSS MUTATED | 12 | 2 | 2 |
19P LOSS WILD-TYPE | 106 | 121 | 45 |
Figure S336. Get High-res Image Gene #69: '19p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D69V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S337. Gene #70: '19q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
19Q LOSS MUTATED | 0 | 0 | 5 | 10 |
19Q LOSS WILD-TYPE | 106 | 73 | 44 | 50 |
Figure S337. Get High-res Image Gene #70: '19q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D70V1.png)
P value = 0.00012 (Fisher's exact test), Q value = 0.00066
Table S338. Gene #70: '19q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
19Q LOSS MUTATED | 3 | 0 | 0 | 3 | 7 | 2 |
19Q LOSS WILD-TYPE | 53 | 42 | 59 | 54 | 22 | 27 |
Figure S338. Get High-res Image Gene #70: '19q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D70V2.png)
P value = 8e-04 (Fisher's exact test), Q value = 0.0034
Table S339. Gene #70: '19q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
19Q LOSS MUTATED | 0 | 0 | 4 | 2 | 9 |
19Q LOSS WILD-TYPE | 32 | 90 | 66 | 30 | 55 |
Figure S339. Get High-res Image Gene #70: '19q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D70V5.png)
P value = 0.0358 (Fisher's exact test), Q value = 0.078
Table S340. Gene #70: '19q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
19Q LOSS MUTATED | 10 | 2 | 3 |
19Q LOSS WILD-TYPE | 108 | 121 | 44 |
Figure S340. Get High-res Image Gene #70: '19q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D70V6.png)
P value = 0.0102 (Fisher's exact test), Q value = 0.028
Table S341. Gene #71: '21q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
21Q LOSS MUTATED | 10 | 7 | 13 | 13 |
21Q LOSS WILD-TYPE | 96 | 66 | 36 | 47 |
Figure S341. Get High-res Image Gene #71: '21q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D71V1.png)
P value = 0.001 (Fisher's exact test), Q value = 0.004
Table S342. Gene #72: '22q loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
22Q LOSS MUTATED | 23 | 5 | 12 | 20 |
22Q LOSS WILD-TYPE | 83 | 68 | 37 | 40 |
Figure S342. Get High-res Image Gene #72: '22q loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D72V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S343. Gene #72: '22q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
22Q LOSS MUTATED | 9 | 7 | 1 | 5 | 22 | 13 |
22Q LOSS WILD-TYPE | 47 | 35 | 58 | 52 | 7 | 16 |
Figure S343. Get High-res Image Gene #72: '22q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D72V2.png)
P value = 0.0146 (Fisher's exact test), Q value = 0.037
Table S344. Gene #72: '22q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
22Q LOSS MUTATED | 4 | 11 | 23 | 10 |
22Q LOSS WILD-TYPE | 35 | 55 | 42 | 33 |
Figure S344. Get High-res Image Gene #72: '22q loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D72V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S345. Gene #72: '22q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
22Q LOSS MUTATED | 2 | 4 | 15 | 7 | 32 |
22Q LOSS WILD-TYPE | 30 | 86 | 55 | 25 | 32 |
Figure S345. Get High-res Image Gene #72: '22q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D72V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S346. Gene #72: '22q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
22Q LOSS MUTATED | 35 | 8 | 17 |
22Q LOSS WILD-TYPE | 83 | 115 | 30 |
Figure S346. Get High-res Image Gene #72: '22q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D72V6.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00047
Table S347. Gene #72: '22q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
22Q LOSS MUTATED | 3 | 14 | 7 | 19 | 14 | 3 |
22Q LOSS WILD-TYPE | 26 | 23 | 59 | 24 | 66 | 30 |
Figure S347. Get High-res Image Gene #72: '22q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D72V7.png)
P value = 0.00861 (Fisher's exact test), Q value = 0.024
Table S348. Gene #72: '22q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
22Q LOSS MUTATED | 21 | 27 | 1 |
22Q LOSS WILD-TYPE | 71 | 72 | 30 |
Figure S348. Get High-res Image Gene #72: '22q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D72V10.png)
P value = 0.00607 (Fisher's exact test), Q value = 0.018
Table S349. Gene #73: 'xp loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
XP LOSS MUTATED | 12 | 2 | 6 | 13 |
XP LOSS WILD-TYPE | 94 | 71 | 43 | 47 |
Figure S349. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D73V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S350. Gene #73: 'xp loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
XP LOSS MUTATED | 6 | 3 | 0 | 2 | 12 | 7 |
XP LOSS WILD-TYPE | 50 | 39 | 59 | 55 | 17 | 22 |
Figure S350. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D73V2.png)
P value = 0.00242 (Fisher's exact test), Q value = 0.0086
Table S351. Gene #73: 'xp loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
XP LOSS MUTATED | 1 | 5 | 14 | 1 |
XP LOSS WILD-TYPE | 38 | 61 | 51 | 42 |
Figure S351. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D73V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S352. Gene #73: 'xp loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
XP LOSS MUTATED | 0 | 2 | 7 | 2 | 22 |
XP LOSS WILD-TYPE | 32 | 88 | 63 | 30 | 42 |
Figure S352. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D73V5.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00021
Table S353. Gene #73: 'xp loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
XP LOSS MUTATED | 19 | 3 | 11 |
XP LOSS WILD-TYPE | 99 | 120 | 36 |
Figure S353. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D73V6.png)
P value = 0.023 (Fisher's exact test), Q value = 0.054
Table S354. Gene #73: 'xp loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
XP LOSS MUTATED | 1 | 5 | 3 | 11 | 10 | 3 |
XP LOSS WILD-TYPE | 28 | 32 | 63 | 32 | 70 | 30 |
Figure S354. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D73V7.png)
P value = 0.0266 (Fisher's exact test), Q value = 0.06
Table S355. Gene #73: 'xp loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
XP LOSS MUTATED | 9 | 3 | 13 |
XP LOSS WILD-TYPE | 62 | 72 | 63 |
Figure S355. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D73V9.png)
P value = 0.00398 (Fisher's exact test), Q value = 0.013
Table S356. Gene #73: 'xp loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
XP LOSS MUTATED | 5 | 19 | 1 |
XP LOSS WILD-TYPE | 87 | 80 | 30 |
Figure S356. Get High-res Image Gene #73: 'xp loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D73V10.png)
P value = 0.00273 (Fisher's exact test), Q value = 0.0095
Table S357. Gene #74: 'xq loss' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
XQ LOSS MUTATED | 11 | 1 | 5 | 12 |
XQ LOSS WILD-TYPE | 95 | 72 | 44 | 48 |
Figure S357. Get High-res Image Gene #74: 'xq loss' versus Molecular Subtype #1: 'CN_CNMF'
![](D74V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S358. Gene #74: 'xq loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
XQ LOSS MUTATED | 6 | 3 | 0 | 2 | 10 | 6 |
XQ LOSS WILD-TYPE | 50 | 39 | 59 | 55 | 19 | 23 |
Figure S358. Get High-res Image Gene #74: 'xq loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D74V2.png)
P value = 0.0125 (Fisher's exact test), Q value = 0.033
Table S359. Gene #74: 'xq loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
XQ LOSS MUTATED | 1 | 5 | 12 | 1 |
XQ LOSS WILD-TYPE | 38 | 61 | 53 | 42 |
Figure S359. Get High-res Image Gene #74: 'xq loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D74V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
Table S360. Gene #74: 'xq loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
XQ LOSS MUTATED | 0 | 1 | 6 | 2 | 20 |
XQ LOSS WILD-TYPE | 32 | 89 | 64 | 30 | 44 |
Figure S360. Get High-res Image Gene #74: 'xq loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D74V5.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00047
Table S361. Gene #74: 'xq loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
XQ LOSS MUTATED | 17 | 2 | 10 |
XQ LOSS WILD-TYPE | 101 | 121 | 37 |
Figure S361. Get High-res Image Gene #74: 'xq loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D74V6.png)
P value = 0.0134 (Fisher's exact test), Q value = 0.035
Table S362. Gene #74: 'xq loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
XQ LOSS MUTATED | 5 | 17 | 1 |
XQ LOSS WILD-TYPE | 87 | 82 | 30 |
Figure S362. Get High-res Image Gene #74: 'xq loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D74V10.png)
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/22533934/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRP-TP/22542911/KIRP-TP.transferedmergedcluster.txt
-
Number of patients = 288
-
Number of significantly arm-level cnvs = 74
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.