This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 28 focal events and 10 molecular subtypes across 288 patients, 177 significant findings detected with P value < 0.05 and Q value < 0.25.
-
amp_2p23.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
-
amp_2q32.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
-
amp_3q26.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_5q35.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
amp_7p11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_7q31.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
amp_17q23.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_1p36.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_2p12 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
-
del_2q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
-
del_2q37.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
-
del_3p22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_4q34.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_5p15.33 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
del_5q35.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_6p12.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
del_6q25.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
-
del_9p21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_10q21.1 cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_11q22.3 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_11q23.3 cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_14q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_14q24.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_15q13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
del_16q24.2 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
del_19p13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
del_19q13.42 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
-
del_22q12.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 28 focal events and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 177 significant findings detected.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 7p11 2 | 175 (61%) | 113 |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.0113 (0.0229) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
8e-05 (0.000329) |
0.00041 (0.00145) |
1e-05 (5.38e-05) |
3e-05 (0.000135) |
amp 7q31 2 | 177 (61%) | 111 |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.0203 (0.0368) |
3e-05 (0.000135) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.00068 (0.00227) |
0.00059 (0.00201) |
1e-05 (5.38e-05) |
3e-05 (0.000135) |
amp 17q23 2 | 199 (69%) | 89 |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.00346 (0.00838) |
9e-05 (0.00036) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.00882 (0.0182) |
0.00773 (0.0162) |
0.0002 (0.000757) |
0.00036 (0.00129) |
del 5q35 2 | 11 (4%) | 277 |
0.0403 (0.066) |
1e-05 (5.38e-05) |
0.0336 (0.0564) |
0.00021 (0.000784) |
0.00027 (0.000995) |
1e-05 (5.38e-05) |
0.0797 (0.119) |
0.00077 (0.00254) |
0.0032 (0.008) |
0.0183 (0.0335) |
del 9p21 3 | 40 (14%) | 248 |
0.00269 (0.00703) |
1e-05 (5.38e-05) |
0.368 (0.444) |
0.00112 (0.00348) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.0125 (0.0246) |
0.0124 (0.0246) |
0.00111 (0.00348) |
6e-05 (0.000255) |
del 14q24 2 | 50 (17%) | 238 |
2e-05 (9.82e-05) |
4e-05 (0.000178) |
0.0237 (0.0423) |
0.00271 (0.00703) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.0243 (0.0431) |
1 (1.00) |
0.0153 (0.0285) |
0.00357 (0.00854) |
amp 3q26 31 | 101 (35%) | 187 |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.238 (0.303) |
0.00151 (0.00448) |
1e-05 (5.38e-05) |
0.0121 (0.0242) |
0.00255 (0.00693) |
0.00344 (0.00838) |
0.557 (0.621) |
0.00484 (0.0111) |
del 3p22 1 | 25 (9%) | 263 |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.385 (0.46) |
0.0296 (0.0508) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.0143 (0.0277) |
0.0455 (0.0724) |
0.0503 (0.0791) |
0.00266 (0.00703) |
del 4q34 3 | 32 (11%) | 256 |
0.00116 (0.00357) |
1e-05 (5.38e-05) |
0.275 (0.345) |
0.0128 (0.0251) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.0552 (0.0857) |
0.468 (0.533) |
0.0269 (0.0467) |
0.00347 (0.00838) |
del 10q21 1 | 19 (7%) | 269 |
0.12 (0.166) |
0.00016 (0.000614) |
0.762 (0.805) |
0.0422 (0.0679) |
1e-05 (5.38e-05) |
0.0009 (0.0029) |
0.0231 (0.0414) |
0.794 (0.833) |
0.0446 (0.0714) |
0.00733 (0.0154) |
del 11q23 3 | 29 (10%) | 259 |
0.211 (0.274) |
0.00047 (0.00164) |
0.338 (0.417) |
0.041 (0.0666) |
0.0001 (0.000394) |
0.00159 (0.00459) |
0.0319 (0.0538) |
0.371 (0.446) |
0.0148 (0.028) |
0.00573 (0.0128) |
del 22q12 2 | 63 (22%) | 225 |
0.00231 (0.00647) |
1e-05 (5.38e-05) |
0.441 (0.51) |
0.00637 (0.014) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
5e-05 (0.000215) |
0.749 (0.798) |
0.0956 (0.139) |
0.00646 (0.0141) |
del 1p36 31 | 54 (19%) | 234 |
2e-05 (9.82e-05) |
1e-05 (5.38e-05) |
0.416 (0.49) |
0.0894 (0.133) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.00489 (0.0111) |
0.874 (0.907) |
0.0531 (0.083) |
0.0027 (0.00703) |
del 2q22 1 | 10 (3%) | 278 |
0.0359 (0.0594) |
0.00152 (0.00448) |
0.00622 (0.0138) |
0.717 (0.766) |
3e-05 (0.000135) |
0.00729 (0.0154) |
0.0135 (0.0262) |
1 (1.00) |
0.368 (0.444) |
0.411 (0.488) |
del 2q37 3 | 12 (4%) | 276 |
0.00816 (0.0169) |
0.00156 (0.00455) |
0.00055 (0.0019) |
0.214 (0.277) |
0.0246 (0.0433) |
0.00241 (0.00667) |
0.0174 (0.0321) |
0.291 (0.363) |
0.0576 (0.0881) |
0.444 (0.512) |
del 6q25 3 | 32 (11%) | 256 |
0.0119 (0.0239) |
1e-05 (5.38e-05) |
0.697 (0.748) |
0.0188 (0.0342) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.0278 (0.0481) |
1 (1.00) |
0.0696 (0.105) |
0.0554 (0.0857) |
del 14q11 2 | 51 (18%) | 237 |
0.00016 (0.000614) |
0.00119 (0.00362) |
0.0635 (0.0967) |
0.00447 (0.0104) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.118 (0.166) |
0.959 (0.981) |
0.0557 (0.0857) |
0.0148 (0.028) |
del 15q13 3 | 35 (12%) | 253 |
0.00282 (0.00724) |
3e-05 (0.000135) |
0.12 (0.166) |
0.0312 (0.0533) |
1e-05 (5.38e-05) |
1e-05 (5.38e-05) |
0.103 (0.148) |
0.108 (0.155) |
0.0926 (0.136) |
0.0174 (0.0321) |
amp 5q35 3 | 37 (13%) | 251 |
9e-05 (0.00036) |
0.00028 (0.00102) |
0.535 (0.602) |
0.618 (0.681) |
0.00142 (0.00428) |
1e-05 (5.38e-05) |
0.436 (0.507) |
0.0412 (0.0666) |
0.422 (0.495) |
0.126 (0.173) |
del 11q22 3 | 31 (11%) | 257 |
0.185 (0.246) |
0.00472 (0.0109) |
0.639 (0.702) |
0.102 (0.148) |
5e-05 (0.000215) |
0.00243 (0.00667) |
0.112 (0.158) |
0.429 (0.501) |
0.00672 (0.0144) |
0.00271 (0.00703) |
del 19q13 42 | 19 (7%) | 269 |
1e-05 (5.38e-05) |
0.00068 (0.00227) |
0.792 (0.833) |
0.415 (0.49) |
8e-05 (0.000329) |
0.00344 (0.00838) |
0.00658 (0.0143) |
0.472 (0.536) |
0.664 (0.723) |
0.21 (0.274) |
amp 2p23 2 | 45 (16%) | 243 |
1e-05 (5.38e-05) |
2e-05 (9.82e-05) |
0.762 (0.805) |
0.0487 (0.077) |
0.459 (0.527) |
0.952 (0.977) |
0.0317 (0.0538) |
0.179 (0.239) |
0.654 (0.715) |
0.541 (0.606) |
del 6p12 3 | 26 (9%) | 262 |
0.0147 (0.028) |
1e-05 (5.38e-05) |
1 (1.00) |
0.237 (0.303) |
2e-05 (9.82e-05) |
0.001 (0.00318) |
0.461 (0.527) |
0.594 (0.657) |
0.393 (0.468) |
0.189 (0.249) |
del 16q24 2 | 12 (4%) | 276 |
0.171 (0.23) |
0.00306 (0.00772) |
0.224 (0.289) |
0.0953 (0.139) |
0.00573 (0.0128) |
0.0021 (0.00594) |
0.513 (0.579) |
0.313 (0.388) |
0.0259 (0.0454) |
0.172 (0.23) |
del 19p13 3 | 23 (8%) | 265 |
1e-05 (5.38e-05) |
0.003 (0.00764) |
0.891 (0.921) |
0.81 (0.846) |
0.00396 (0.0094) |
0.00442 (0.0104) |
0.123 (0.17) |
0.195 (0.257) |
0.156 (0.212) |
0.106 (0.153) |
amp 2q32 1 | 53 (18%) | 235 |
1e-05 (5.38e-05) |
2e-05 (9.82e-05) |
0.837 (0.871) |
0.116 (0.163) |
0.143 (0.196) |
0.937 (0.965) |
0.0342 (0.0569) |
0.351 (0.43) |
1 (1.00) |
0.307 (0.382) |
del 2p12 | 8 (3%) | 280 |
0.265 (0.336) |
0.00188 (0.00537) |
0.17 (0.23) |
0.671 (0.728) |
0.0374 (0.0615) |
0.11 (0.157) |
0.00944 (0.0193) |
0.27 (0.34) |
0.697 (0.748) |
1 (1.00) |
del 5p15 33 | 13 (5%) | 275 |
0.0925 (0.136) |
0.00667 (0.0144) |
0.68 (0.735) |
0.0783 (0.118) |
0.0152 (0.0285) |
0.00089 (0.0029) |
0.367 (0.444) |
0.227 (0.292) |
0.34 (0.418) |
0.577 (0.641) |
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S1. Gene #1: 'amp_2p23.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
AMP PEAK 1(2P23.2) MUTATED | 5 | 3 | 28 | 9 |
AMP PEAK 1(2P23.2) WILD-TYPE | 101 | 70 | 21 | 51 |
Figure S1. Get High-res Image Gene #1: 'amp_2p23.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D1V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 9.8e-05
Table S2. Gene #1: 'amp_2p23.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
AMP PEAK 1(2P23.2) MUTATED | 5 | 2 | 2 | 19 | 5 | 9 |
AMP PEAK 1(2P23.2) WILD-TYPE | 51 | 40 | 57 | 38 | 24 | 20 |
Figure S2. Get High-res Image Gene #1: 'amp_2p23.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D1V2.png)
P value = 0.0487 (Fisher's exact test), Q value = 0.077
Table S3. Gene #1: 'amp_2p23.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
AMP PEAK 1(2P23.2) MUTATED | 7 | 8 | 15 | 2 |
AMP PEAK 1(2P23.2) WILD-TYPE | 32 | 58 | 50 | 41 |
Figure S3. Get High-res Image Gene #1: 'amp_2p23.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D1V4.png)
P value = 0.0317 (Fisher's exact test), Q value = 0.054
Table S4. Gene #1: 'amp_2p23.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
AMP PEAK 1(2P23.2) MUTATED | 3 | 1 | 17 | 9 | 11 | 4 |
AMP PEAK 1(2P23.2) WILD-TYPE | 26 | 36 | 49 | 34 | 69 | 29 |
Figure S4. Get High-res Image Gene #1: 'amp_2p23.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D1V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S5. Gene #2: 'amp_2q32.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
AMP PEAK 2(2Q32.1) MUTATED | 9 | 4 | 30 | 10 |
AMP PEAK 2(2Q32.1) WILD-TYPE | 97 | 69 | 19 | 50 |
Figure S5. Get High-res Image Gene #2: 'amp_2q32.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D2V1.png)
P value = 2e-05 (Fisher's exact test), Q value = 9.8e-05
Table S6. Gene #2: 'amp_2q32.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
AMP PEAK 2(2Q32.1) MUTATED | 6 | 5 | 2 | 22 | 7 | 8 |
AMP PEAK 2(2Q32.1) WILD-TYPE | 50 | 37 | 57 | 35 | 22 | 21 |
Figure S6. Get High-res Image Gene #2: 'amp_2q32.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D2V2.png)
P value = 0.0342 (Fisher's exact test), Q value = 0.057
Table S7. Gene #2: 'amp_2q32.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
AMP PEAK 2(2Q32.1) MUTATED | 4 | 2 | 17 | 13 | 13 | 4 |
AMP PEAK 2(2Q32.1) WILD-TYPE | 25 | 35 | 49 | 30 | 67 | 29 |
Figure S7. Get High-res Image Gene #2: 'amp_2q32.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D2V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S8. Gene #3: 'amp_3q26.31' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
AMP PEAK 3(3Q26.31) MUTATED | 25 | 27 | 37 | 12 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 81 | 46 | 12 | 48 |
Figure S8. Get High-res Image Gene #3: 'amp_3q26.31' versus Molecular Subtype #1: 'CN_CNMF'
![](D3V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S9. Gene #3: 'amp_3q26.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
AMP PEAK 3(3Q26.31) MUTATED | 20 | 9 | 15 | 38 | 7 | 6 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 36 | 33 | 44 | 19 | 22 | 23 |
Figure S9. Get High-res Image Gene #3: 'amp_3q26.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D3V2.png)
P value = 0.00151 (Fisher's exact test), Q value = 0.0045
Table S10. Gene #3: 'amp_3q26.31' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
AMP PEAK 3(3Q26.31) MUTATED | 23 | 24 | 16 | 10 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 16 | 42 | 49 | 33 |
Figure S10. Get High-res Image Gene #3: 'amp_3q26.31' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D3V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S11. Gene #3: 'amp_3q26.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
AMP PEAK 3(3Q26.31) MUTATED | 22 | 36 | 28 | 7 | 8 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 10 | 54 | 42 | 25 | 56 |
Figure S11. Get High-res Image Gene #3: 'amp_3q26.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D3V5.png)
P value = 0.0121 (Fisher's exact test), Q value = 0.024
Table S12. Gene #3: 'amp_3q26.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 3(3Q26.31) MUTATED | 37 | 54 | 10 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 81 | 69 | 37 |
Figure S12. Get High-res Image Gene #3: 'amp_3q26.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D3V6.png)
P value = 0.00255 (Fisher's exact test), Q value = 0.0069
Table S13. Gene #3: 'amp_3q26.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
AMP PEAK 3(3Q26.31) MUTATED | 11 | 12 | 33 | 7 | 22 | 16 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 18 | 25 | 33 | 36 | 58 | 17 |
Figure S13. Get High-res Image Gene #3: 'amp_3q26.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D3V7.png)
P value = 0.00344 (Fisher's exact test), Q value = 0.0084
Table S14. Gene #3: 'amp_3q26.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
AMP PEAK 3(3Q26.31) MUTATED | 41 | 39 | 21 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 79 | 41 | 67 |
Figure S14. Get High-res Image Gene #3: 'amp_3q26.31' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D3V8.png)
P value = 0.00484 (Fisher's exact test), Q value = 0.011
Table S15. Gene #3: 'amp_3q26.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
AMP PEAK 3(3Q26.31) MUTATED | 41 | 25 | 6 |
AMP PEAK 3(3Q26.31) WILD-TYPE | 51 | 74 | 25 |
Figure S15. Get High-res Image Gene #3: 'amp_3q26.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D3V10.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00036
Table S16. Gene #4: 'amp_5q35.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
AMP PEAK 4(5Q35.3) MUTATED | 16 | 1 | 4 | 16 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 90 | 72 | 45 | 44 |
Figure S16. Get High-res Image Gene #4: 'amp_5q35.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D4V1.png)
P value = 0.00028 (Fisher's exact test), Q value = 0.001
Table S17. Gene #4: 'amp_5q35.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
AMP PEAK 4(5Q35.3) MUTATED | 10 | 5 | 2 | 2 | 10 | 5 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 46 | 37 | 57 | 55 | 19 | 24 |
Figure S17. Get High-res Image Gene #4: 'amp_5q35.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D4V2.png)
P value = 0.00142 (Fisher's exact test), Q value = 0.0043
Table S18. Gene #4: 'amp_5q35.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
AMP PEAK 4(5Q35.3) MUTATED | 5 | 4 | 12 | 1 | 15 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 27 | 86 | 58 | 31 | 49 |
Figure S18. Get High-res Image Gene #4: 'amp_5q35.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D4V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S19. Gene #4: 'amp_5q35.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 4(5Q35.3) MUTATED | 29 | 4 | 4 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 89 | 119 | 43 |
Figure S19. Get High-res Image Gene #4: 'amp_5q35.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D4V6.png)
P value = 0.0412 (Fisher's exact test), Q value = 0.067
Table S20. Gene #4: 'amp_5q35.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
AMP PEAK 4(5Q35.3) MUTATED | 22 | 5 | 10 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 98 | 75 | 78 |
Figure S20. Get High-res Image Gene #4: 'amp_5q35.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D4V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S21. Gene #5: 'amp_7p11.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
AMP PEAK 5(7P11.2) MUTATED | 30 | 71 | 38 | 36 |
AMP PEAK 5(7P11.2) WILD-TYPE | 76 | 2 | 11 | 24 |
Figure S21. Get High-res Image Gene #5: 'amp_7p11.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D5V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S22. Gene #5: 'amp_7p11.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
AMP PEAK 5(7P11.2) MUTATED | 28 | 21 | 47 | 50 | 7 | 11 |
AMP PEAK 5(7P11.2) WILD-TYPE | 28 | 21 | 12 | 7 | 22 | 18 |
Figure S22. Get High-res Image Gene #5: 'amp_7p11.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D5V2.png)
P value = 0.0113 (Fisher's exact test), Q value = 0.023
Table S23. Gene #5: 'amp_7p11.2' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
AMP PEAK 5(7P11.2) MUTATED | 46 | 60 | 27 |
AMP PEAK 5(7P11.2) WILD-TYPE | 29 | 22 | 29 |
Figure S23. Get High-res Image Gene #5: 'amp_7p11.2' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D5V3.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S24. Gene #5: 'amp_7p11.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
AMP PEAK 5(7P11.2) MUTATED | 31 | 53 | 29 | 20 |
AMP PEAK 5(7P11.2) WILD-TYPE | 8 | 13 | 36 | 23 |
Figure S24. Get High-res Image Gene #5: 'amp_7p11.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D5V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S25. Gene #5: 'amp_7p11.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
AMP PEAK 5(7P11.2) MUTATED | 28 | 79 | 39 | 13 | 16 |
AMP PEAK 5(7P11.2) WILD-TYPE | 4 | 11 | 31 | 19 | 48 |
Figure S25. Get High-res Image Gene #5: 'amp_7p11.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D5V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S26. Gene #5: 'amp_7p11.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 5(7P11.2) MUTATED | 55 | 104 | 16 |
AMP PEAK 5(7P11.2) WILD-TYPE | 63 | 19 | 31 |
Figure S26. Get High-res Image Gene #5: 'amp_7p11.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D5V6.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00033
Table S27. Gene #5: 'amp_7p11.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
AMP PEAK 5(7P11.2) MUTATED | 18 | 20 | 52 | 14 | 47 | 24 |
AMP PEAK 5(7P11.2) WILD-TYPE | 11 | 17 | 14 | 29 | 33 | 9 |
Figure S27. Get High-res Image Gene #5: 'amp_7p11.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D5V7.png)
P value = 0.00041 (Fisher's exact test), Q value = 0.0015
Table S28. Gene #5: 'amp_7p11.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
AMP PEAK 5(7P11.2) MUTATED | 66 | 63 | 46 |
AMP PEAK 5(7P11.2) WILD-TYPE | 54 | 17 | 42 |
Figure S28. Get High-res Image Gene #5: 'amp_7p11.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D5V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S29. Gene #5: 'amp_7p11.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
AMP PEAK 5(7P11.2) MUTATED | 33 | 61 | 38 |
AMP PEAK 5(7P11.2) WILD-TYPE | 38 | 14 | 38 |
Figure S29. Get High-res Image Gene #5: 'amp_7p11.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D5V9.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00014
Table S30. Gene #5: 'amp_7p11.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
AMP PEAK 5(7P11.2) MUTATED | 61 | 44 | 27 |
AMP PEAK 5(7P11.2) WILD-TYPE | 31 | 55 | 4 |
Figure S30. Get High-res Image Gene #5: 'amp_7p11.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D5V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S31. Gene #6: 'amp_7q31.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
AMP PEAK 6(7Q31.2) MUTATED | 31 | 73 | 38 | 35 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 75 | 0 | 11 | 25 |
Figure S31. Get High-res Image Gene #6: 'amp_7q31.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D6V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S32. Gene #6: 'amp_7q31.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
AMP PEAK 6(7Q31.2) MUTATED | 28 | 21 | 48 | 50 | 7 | 12 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 28 | 21 | 11 | 7 | 22 | 17 |
Figure S32. Get High-res Image Gene #6: 'amp_7q31.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D6V2.png)
P value = 0.0203 (Fisher's exact test), Q value = 0.037
Table S33. Gene #6: 'amp_7q31.2' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
AMP PEAK 6(7Q31.2) MUTATED | 46 | 60 | 28 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 29 | 22 | 28 |
Figure S33. Get High-res Image Gene #6: 'amp_7q31.2' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D6V3.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00014
Table S34. Gene #6: 'amp_7q31.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
AMP PEAK 6(7Q31.2) MUTATED | 31 | 53 | 30 | 20 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 8 | 13 | 35 | 23 |
Figure S34. Get High-res Image Gene #6: 'amp_7q31.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D6V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S35. Gene #6: 'amp_7q31.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
AMP PEAK 6(7Q31.2) MUTATED | 28 | 80 | 39 | 13 | 17 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 4 | 10 | 31 | 19 | 47 |
Figure S35. Get High-res Image Gene #6: 'amp_7q31.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D6V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S36. Gene #6: 'amp_7q31.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 6(7Q31.2) MUTATED | 54 | 105 | 18 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 64 | 18 | 29 |
Figure S36. Get High-res Image Gene #6: 'amp_7q31.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D6V6.png)
P value = 0.00068 (Fisher's exact test), Q value = 0.0023
Table S37. Gene #6: 'amp_7q31.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
AMP PEAK 6(7Q31.2) MUTATED | 18 | 20 | 52 | 16 | 48 | 23 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 11 | 17 | 14 | 27 | 32 | 10 |
Figure S37. Get High-res Image Gene #6: 'amp_7q31.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D6V7.png)
P value = 0.00059 (Fisher's exact test), Q value = 0.002
Table S38. Gene #6: 'amp_7q31.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
AMP PEAK 6(7Q31.2) MUTATED | 67 | 63 | 47 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 53 | 17 | 41 |
Figure S38. Get High-res Image Gene #6: 'amp_7q31.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D6V8.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S39. Gene #6: 'amp_7q31.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
AMP PEAK 6(7Q31.2) MUTATED | 33 | 62 | 38 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 38 | 13 | 38 |
Figure S39. Get High-res Image Gene #6: 'amp_7q31.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D6V9.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00014
Table S40. Gene #6: 'amp_7q31.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
AMP PEAK 6(7Q31.2) MUTATED | 62 | 44 | 27 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 30 | 55 | 4 |
Figure S40. Get High-res Image Gene #6: 'amp_7q31.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D6V10.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S41. Gene #7: 'amp_17q23.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
AMP PEAK 7(17Q23.2) MUTATED | 31 | 71 | 44 | 53 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 75 | 2 | 5 | 7 |
Figure S41. Get High-res Image Gene #7: 'amp_17q23.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D7V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S42. Gene #7: 'amp_17q23.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
AMP PEAK 7(17Q23.2) MUTATED | 32 | 24 | 49 | 54 | 14 | 14 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 24 | 18 | 10 | 3 | 15 | 15 |
Figure S42. Get High-res Image Gene #7: 'amp_17q23.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D7V2.png)
P value = 0.00346 (Fisher's exact test), Q value = 0.0084
Table S43. Gene #7: 'amp_17q23.2' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
AMP PEAK 7(17Q23.2) MUTATED | 55 | 64 | 29 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 20 | 18 | 27 |
Figure S43. Get High-res Image Gene #7: 'amp_17q23.2' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D7V3.png)
P value = 9e-05 (Fisher's exact test), Q value = 0.00036
Table S44. Gene #7: 'amp_17q23.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
AMP PEAK 7(17Q23.2) MUTATED | 35 | 53 | 36 | 24 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 4 | 13 | 29 | 19 |
Figure S44. Get High-res Image Gene #7: 'amp_17q23.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D7V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S45. Gene #7: 'amp_17q23.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
AMP PEAK 7(17Q23.2) MUTATED | 28 | 82 | 43 | 14 | 32 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 4 | 8 | 27 | 18 | 32 |
Figure S45. Get High-res Image Gene #7: 'amp_17q23.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D7V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S46. Gene #7: 'amp_17q23.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 7(17Q23.2) MUTATED | 72 | 109 | 18 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 46 | 14 | 29 |
Figure S46. Get High-res Image Gene #7: 'amp_17q23.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D7V6.png)
P value = 0.00882 (Fisher's exact test), Q value = 0.018
Table S47. Gene #7: 'amp_17q23.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
AMP PEAK 7(17Q23.2) MUTATED | 21 | 23 | 56 | 23 | 56 | 20 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 8 | 14 | 10 | 20 | 24 | 13 |
Figure S47. Get High-res Image Gene #7: 'amp_17q23.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D7V7.png)
P value = 0.00773 (Fisher's exact test), Q value = 0.016
Table S48. Gene #7: 'amp_17q23.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
AMP PEAK 7(17Q23.2) MUTATED | 76 | 66 | 57 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 44 | 14 | 31 |
Figure S48. Get High-res Image Gene #7: 'amp_17q23.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D7V8.png)
P value = 2e-04 (Fisher's exact test), Q value = 0.00076
Table S49. Gene #7: 'amp_17q23.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
AMP PEAK 7(17Q23.2) MUTATED | 44 | 64 | 43 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 27 | 11 | 33 |
Figure S49. Get High-res Image Gene #7: 'amp_17q23.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D7V9.png)
P value = 0.00036 (Fisher's exact test), Q value = 0.0013
Table S50. Gene #7: 'amp_17q23.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
AMP PEAK 7(17Q23.2) MUTATED | 68 | 55 | 28 |
AMP PEAK 7(17Q23.2) WILD-TYPE | 24 | 44 | 3 |
Figure S50. Get High-res Image Gene #7: 'amp_17q23.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D7V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 9.8e-05
Table S51. Gene #8: 'del_1p36.31' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 1(1P36.31) MUTATED | 24 | 1 | 10 | 19 |
DEL PEAK 1(1P36.31) WILD-TYPE | 82 | 72 | 39 | 41 |
Figure S51. Get High-res Image Gene #8: 'del_1p36.31' versus Molecular Subtype #1: 'CN_CNMF'
![](D8V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S52. Gene #8: 'del_1p36.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 1(1P36.31) MUTATED | 12 | 2 | 1 | 5 | 19 | 12 |
DEL PEAK 1(1P36.31) WILD-TYPE | 44 | 40 | 58 | 52 | 10 | 17 |
Figure S52. Get High-res Image Gene #8: 'del_1p36.31' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D8V2.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S53. Gene #8: 'del_1p36.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 1(1P36.31) MUTATED | 1 | 4 | 9 | 5 | 35 |
DEL PEAK 1(1P36.31) WILD-TYPE | 31 | 86 | 61 | 27 | 29 |
Figure S53. Get High-res Image Gene #8: 'del_1p36.31' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D8V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S54. Gene #8: 'del_1p36.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 1(1P36.31) MUTATED | 28 | 7 | 19 |
DEL PEAK 1(1P36.31) WILD-TYPE | 90 | 116 | 28 |
Figure S54. Get High-res Image Gene #8: 'del_1p36.31' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D8V6.png)
P value = 0.00489 (Fisher's exact test), Q value = 0.011
Table S55. Gene #8: 'del_1p36.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 1(1P36.31) MUTATED | 5 | 10 | 6 | 16 | 14 | 3 |
DEL PEAK 1(1P36.31) WILD-TYPE | 24 | 27 | 60 | 27 | 66 | 30 |
Figure S55. Get High-res Image Gene #8: 'del_1p36.31' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D8V7.png)
P value = 0.0027 (Fisher's exact test), Q value = 0.007
Table S56. Gene #8: 'del_1p36.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 1(1P36.31) MUTATED | 15 | 24 | 0 |
DEL PEAK 1(1P36.31) WILD-TYPE | 77 | 75 | 31 |
Figure S56. Get High-res Image Gene #8: 'del_1p36.31' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D8V10.png)
P value = 0.00188 (Fisher's exact test), Q value = 0.0054
Table S57. Gene #9: 'del_2p12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 2(2P12) MUTATED | 1 | 1 | 1 | 0 | 5 | 0 |
DEL PEAK 2(2P12) WILD-TYPE | 55 | 41 | 58 | 57 | 24 | 29 |
Figure S57. Get High-res Image Gene #9: 'del_2p12' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D9V2.png)
P value = 0.0374 (Fisher's exact test), Q value = 0.062
Table S58. Gene #9: 'del_2p12' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 2(2P12) MUTATED | 0 | 0 | 2 | 1 | 5 |
DEL PEAK 2(2P12) WILD-TYPE | 32 | 90 | 68 | 31 | 59 |
Figure S58. Get High-res Image Gene #9: 'del_2p12' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D9V5.png)
P value = 0.00944 (Fisher's exact test), Q value = 0.019
Table S59. Gene #9: 'del_2p12' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 2(2P12) MUTATED | 1 | 2 | 0 | 4 | 0 | 1 |
DEL PEAK 2(2P12) WILD-TYPE | 28 | 35 | 66 | 39 | 80 | 32 |
Figure S59. Get High-res Image Gene #9: 'del_2p12' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D9V7.png)
P value = 0.0359 (Fisher's exact test), Q value = 0.059
Table S60. Gene #10: 'del_2q22.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 3(2Q22.1) MUTATED | 6 | 0 | 0 | 4 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 100 | 73 | 49 | 56 |
Figure S60. Get High-res Image Gene #10: 'del_2q22.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D10V1.png)
P value = 0.00152 (Fisher's exact test), Q value = 0.0045
Table S61. Gene #10: 'del_2q22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 3(2Q22.1) MUTATED | 4 | 0 | 0 | 0 | 4 | 1 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 52 | 42 | 59 | 57 | 25 | 28 |
Figure S61. Get High-res Image Gene #10: 'del_2q22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D10V2.png)
P value = 0.00622 (Fisher's exact test), Q value = 0.014
Table S62. Gene #10: 'del_2q22.1' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
DEL PEAK 3(2Q22.1) MUTATED | 2 | 0 | 5 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 73 | 82 | 51 |
Figure S62. Get High-res Image Gene #10: 'del_2q22.1' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D10V3.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00014
Table S63. Gene #10: 'del_2q22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 3(2Q22.1) MUTATED | 0 | 0 | 1 | 0 | 9 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 32 | 90 | 69 | 32 | 55 |
Figure S63. Get High-res Image Gene #10: 'del_2q22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D10V5.png)
P value = 0.00729 (Fisher's exact test), Q value = 0.015
Table S64. Gene #10: 'del_2q22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 3(2Q22.1) MUTATED | 7 | 0 | 3 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 111 | 123 | 44 |
Figure S64. Get High-res Image Gene #10: 'del_2q22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D10V6.png)
P value = 0.0135 (Fisher's exact test), Q value = 0.026
Table S65. Gene #10: 'del_2q22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 3(2Q22.1) MUTATED | 4 | 2 | 0 | 2 | 1 | 1 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 25 | 35 | 66 | 41 | 79 | 32 |
Figure S65. Get High-res Image Gene #10: 'del_2q22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D10V7.png)
P value = 0.00816 (Fisher's exact test), Q value = 0.017
Table S66. Gene #11: 'del_2q37.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 4(2Q37.3) MUTATED | 10 | 0 | 1 | 1 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 96 | 73 | 48 | 59 |
Figure S66. Get High-res Image Gene #11: 'del_2q37.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D11V1.png)
P value = 0.00156 (Fisher's exact test), Q value = 0.0045
Table S67. Gene #11: 'del_2q37.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 4(2Q37.3) MUTATED | 2 | 2 | 0 | 0 | 5 | 1 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 54 | 40 | 59 | 57 | 24 | 28 |
Figure S67. Get High-res Image Gene #11: 'del_2q37.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D11V2.png)
P value = 0.00055 (Fisher's exact test), Q value = 0.0019
Table S68. Gene #11: 'del_2q37.3' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
DEL PEAK 4(2Q37.3) MUTATED | 0 | 1 | 7 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 75 | 81 | 49 |
Figure S68. Get High-res Image Gene #11: 'del_2q37.3' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D11V3.png)
P value = 0.0246 (Fisher's exact test), Q value = 0.043
Table S69. Gene #11: 'del_2q37.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 4(2Q37.3) MUTATED | 1 | 0 | 4 | 1 | 6 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 31 | 90 | 66 | 31 | 58 |
Figure S69. Get High-res Image Gene #11: 'del_2q37.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D11V5.png)
P value = 0.00241 (Fisher's exact test), Q value = 0.0067
Table S70. Gene #11: 'del_2q37.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 4(2Q37.3) MUTATED | 9 | 0 | 3 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 109 | 123 | 44 |
Figure S70. Get High-res Image Gene #11: 'del_2q37.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D11V6.png)
P value = 0.0174 (Fisher's exact test), Q value = 0.032
Table S71. Gene #11: 'del_2q37.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 4(2Q37.3) MUTATED | 4 | 3 | 0 | 2 | 3 | 0 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 25 | 34 | 66 | 41 | 77 | 33 |
Figure S71. Get High-res Image Gene #11: 'del_2q37.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D11V7.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S72. Gene #12: 'del_3p22.1' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 5(3P22.1) MUTATED | 9 | 0 | 1 | 15 |
DEL PEAK 5(3P22.1) WILD-TYPE | 97 | 73 | 48 | 45 |
Figure S72. Get High-res Image Gene #12: 'del_3p22.1' versus Molecular Subtype #1: 'CN_CNMF'
![](D12V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S73. Gene #12: 'del_3p22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 5(3P22.1) MUTATED | 5 | 4 | 0 | 0 | 11 | 4 |
DEL PEAK 5(3P22.1) WILD-TYPE | 51 | 38 | 59 | 57 | 18 | 25 |
Figure S73. Get High-res Image Gene #12: 'del_3p22.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D12V2.png)
P value = 0.0296 (Fisher's exact test), Q value = 0.051
Table S74. Gene #12: 'del_3p22.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 5(3P22.1) MUTATED | 3 | 4 | 12 | 1 |
DEL PEAK 5(3P22.1) WILD-TYPE | 36 | 62 | 53 | 42 |
Figure S74. Get High-res Image Gene #12: 'del_3p22.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D12V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S75. Gene #12: 'del_3p22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 5(3P22.1) MUTATED | 0 | 0 | 6 | 1 | 18 |
DEL PEAK 5(3P22.1) WILD-TYPE | 32 | 90 | 64 | 31 | 46 |
Figure S75. Get High-res Image Gene #12: 'del_3p22.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D12V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S76. Gene #12: 'del_3p22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 5(3P22.1) MUTATED | 21 | 0 | 4 |
DEL PEAK 5(3P22.1) WILD-TYPE | 97 | 123 | 43 |
Figure S76. Get High-res Image Gene #12: 'del_3p22.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D12V6.png)
P value = 0.0143 (Fisher's exact test), Q value = 0.028
Table S77. Gene #12: 'del_3p22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 5(3P22.1) MUTATED | 1 | 4 | 1 | 9 | 8 | 2 |
DEL PEAK 5(3P22.1) WILD-TYPE | 28 | 33 | 65 | 34 | 72 | 31 |
Figure S77. Get High-res Image Gene #12: 'del_3p22.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D12V7.png)
P value = 0.0455 (Fisher's exact test), Q value = 0.072
Table S78. Gene #12: 'del_3p22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
DEL PEAK 5(3P22.1) MUTATED | 13 | 2 | 10 |
DEL PEAK 5(3P22.1) WILD-TYPE | 107 | 78 | 78 |
Figure S78. Get High-res Image Gene #12: 'del_3p22.1' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D12V8.png)
P value = 0.00266 (Fisher's exact test), Q value = 0.007
Table S79. Gene #12: 'del_3p22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 5(3P22.1) MUTATED | 6 | 18 | 0 |
DEL PEAK 5(3P22.1) WILD-TYPE | 86 | 81 | 31 |
Figure S79. Get High-res Image Gene #12: 'del_3p22.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D12V10.png)
P value = 0.00116 (Fisher's exact test), Q value = 0.0036
Table S80. Gene #13: 'del_4q34.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 6(4Q34.3) MUTATED | 11 | 1 | 7 | 13 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 95 | 72 | 42 | 47 |
Figure S80. Get High-res Image Gene #13: 'del_4q34.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D13V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S81. Gene #13: 'del_4q34.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 6(4Q34.3) MUTATED | 4 | 5 | 0 | 2 | 8 | 11 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 52 | 37 | 59 | 55 | 21 | 18 |
Figure S81. Get High-res Image Gene #13: 'del_4q34.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D13V2.png)
P value = 0.0128 (Fisher's exact test), Q value = 0.025
Table S82. Gene #13: 'del_4q34.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 6(4Q34.3) MUTATED | 2 | 4 | 15 | 4 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 37 | 62 | 50 | 39 |
Figure S82. Get High-res Image Gene #13: 'del_4q34.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D13V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S83. Gene #13: 'del_4q34.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 6(4Q34.3) MUTATED | 0 | 1 | 7 | 4 | 20 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 32 | 89 | 63 | 28 | 44 |
Figure S83. Get High-res Image Gene #13: 'del_4q34.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D13V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S84. Gene #13: 'del_4q34.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 6(4Q34.3) MUTATED | 18 | 2 | 12 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 100 | 121 | 35 |
Figure S84. Get High-res Image Gene #13: 'del_4q34.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D13V6.png)
P value = 0.0269 (Fisher's exact test), Q value = 0.047
Table S85. Gene #13: 'del_4q34.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 6(4Q34.3) MUTATED | 11 | 3 | 12 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 60 | 72 | 64 |
Figure S85. Get High-res Image Gene #13: 'del_4q34.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D13V9.png)
P value = 0.00347 (Fisher's exact test), Q value = 0.0084
Table S86. Gene #13: 'del_4q34.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 6(4Q34.3) MUTATED | 7 | 19 | 0 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 85 | 80 | 31 |
Figure S86. Get High-res Image Gene #13: 'del_4q34.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D13V10.png)
P value = 0.00667 (Fisher's exact test), Q value = 0.014
Table S87. Gene #14: 'del_5p15.33' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 7(5P15.33) MUTATED | 1 | 1 | 1 | 2 | 2 | 6 |
DEL PEAK 7(5P15.33) WILD-TYPE | 55 | 41 | 58 | 55 | 27 | 23 |
Figure S87. Get High-res Image Gene #14: 'del_5p15.33' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D14V2.png)
P value = 0.0152 (Fisher's exact test), Q value = 0.029
Table S88. Gene #14: 'del_5p15.33' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 7(5P15.33) MUTATED | 0 | 1 | 4 | 5 | 3 |
DEL PEAK 7(5P15.33) WILD-TYPE | 32 | 89 | 66 | 27 | 61 |
Figure S88. Get High-res Image Gene #14: 'del_5p15.33' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D14V5.png)
P value = 0.00089 (Fisher's exact test), Q value = 0.0029
Table S89. Gene #14: 'del_5p15.33' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 7(5P15.33) MUTATED | 5 | 1 | 7 |
DEL PEAK 7(5P15.33) WILD-TYPE | 113 | 122 | 40 |
Figure S89. Get High-res Image Gene #14: 'del_5p15.33' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D14V6.png)
P value = 0.0403 (Fisher's exact test), Q value = 0.066
Table S90. Gene #15: 'del_5q35.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 8(5Q35.2) MUTATED | 6 | 0 | 4 | 1 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 100 | 73 | 45 | 59 |
Figure S90. Get High-res Image Gene #15: 'del_5q35.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D15V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S91. Gene #15: 'del_5q35.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 8(5Q35.2) MUTATED | 1 | 1 | 0 | 0 | 0 | 8 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 55 | 41 | 59 | 57 | 29 | 21 |
Figure S91. Get High-res Image Gene #15: 'del_5q35.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D15V2.png)
P value = 0.0336 (Fisher's exact test), Q value = 0.056
Table S92. Gene #15: 'del_5q35.2' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
DEL PEAK 8(5Q35.2) MUTATED | 5 | 0 | 3 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 70 | 82 | 53 |
Figure S92. Get High-res Image Gene #15: 'del_5q35.2' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D15V3.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.00078
Table S93. Gene #15: 'del_5q35.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 8(5Q35.2) MUTATED | 0 | 0 | 8 | 0 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 39 | 66 | 57 | 43 |
Figure S93. Get High-res Image Gene #15: 'del_5q35.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D15V4.png)
P value = 0.00027 (Fisher's exact test), Q value = 0.00099
Table S94. Gene #15: 'del_5q35.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 8(5Q35.2) MUTATED | 0 | 0 | 1 | 5 | 5 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 32 | 90 | 69 | 27 | 59 |
Figure S94. Get High-res Image Gene #15: 'del_5q35.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D15V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S95. Gene #15: 'del_5q35.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 8(5Q35.2) MUTATED | 3 | 0 | 8 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 115 | 123 | 39 |
Figure S95. Get High-res Image Gene #15: 'del_5q35.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D15V6.png)
P value = 0.00077 (Fisher's exact test), Q value = 0.0025
Table S96. Gene #15: 'del_5q35.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
DEL PEAK 8(5Q35.2) MUTATED | 2 | 0 | 9 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 118 | 80 | 79 |
Figure S96. Get High-res Image Gene #15: 'del_5q35.2' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D15V8.png)
P value = 0.0032 (Fisher's exact test), Q value = 0.008
Table S97. Gene #15: 'del_5q35.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 8(5Q35.2) MUTATED | 2 | 0 | 8 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 69 | 75 | 68 |
Figure S97. Get High-res Image Gene #15: 'del_5q35.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D15V9.png)
P value = 0.0183 (Fisher's exact test), Q value = 0.033
Table S98. Gene #15: 'del_5q35.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 8(5Q35.2) MUTATED | 1 | 9 | 0 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 91 | 90 | 31 |
Figure S98. Get High-res Image Gene #15: 'del_5q35.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D15V10.png)
P value = 0.0147 (Fisher's exact test), Q value = 0.028
Table S99. Gene #16: 'del_6p12.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 9(6P12.3) MUTATED | 7 | 2 | 8 | 9 |
DEL PEAK 9(6P12.3) WILD-TYPE | 99 | 71 | 41 | 51 |
Figure S99. Get High-res Image Gene #16: 'del_6p12.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D16V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S100. Gene #16: 'del_6p12.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 9(6P12.3) MUTATED | 4 | 2 | 0 | 2 | 8 | 9 |
DEL PEAK 9(6P12.3) WILD-TYPE | 52 | 40 | 59 | 55 | 21 | 20 |
Figure S100. Get High-res Image Gene #16: 'del_6p12.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D16V2.png)
P value = 2e-05 (Fisher's exact test), Q value = 9.8e-05
Table S101. Gene #16: 'del_6p12.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 9(6P12.3) MUTATED | 0 | 3 | 5 | 1 | 17 |
DEL PEAK 9(6P12.3) WILD-TYPE | 32 | 87 | 65 | 31 | 47 |
Figure S101. Get High-res Image Gene #16: 'del_6p12.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D16V5.png)
P value = 0.001 (Fisher's exact test), Q value = 0.0032
Table S102. Gene #16: 'del_6p12.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 9(6P12.3) MUTATED | 12 | 4 | 10 |
DEL PEAK 9(6P12.3) WILD-TYPE | 106 | 119 | 37 |
Figure S102. Get High-res Image Gene #16: 'del_6p12.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D16V6.png)
P value = 0.0119 (Fisher's exact test), Q value = 0.024
Table S103. Gene #17: 'del_6q25.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 10(6Q25.3) MUTATED | 11 | 2 | 8 | 11 |
DEL PEAK 10(6Q25.3) WILD-TYPE | 95 | 71 | 41 | 49 |
Figure S103. Get High-res Image Gene #17: 'del_6q25.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D17V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S104. Gene #17: 'del_6q25.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 10(6Q25.3) MUTATED | 6 | 2 | 0 | 2 | 11 | 10 |
DEL PEAK 10(6Q25.3) WILD-TYPE | 50 | 40 | 59 | 55 | 18 | 19 |
Figure S104. Get High-res Image Gene #17: 'del_6q25.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D17V2.png)
P value = 0.0188 (Fisher's exact test), Q value = 0.034
Table S105. Gene #17: 'del_6q25.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 10(6Q25.3) MUTATED | 4 | 5 | 15 | 2 |
DEL PEAK 10(6Q25.3) WILD-TYPE | 35 | 61 | 50 | 41 |
Figure S105. Get High-res Image Gene #17: 'del_6q25.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D17V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S106. Gene #17: 'del_6q25.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 10(6Q25.3) MUTATED | 0 | 2 | 6 | 2 | 22 |
DEL PEAK 10(6Q25.3) WILD-TYPE | 32 | 88 | 64 | 30 | 42 |
Figure S106. Get High-res Image Gene #17: 'del_6q25.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D17V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S107. Gene #17: 'del_6q25.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 10(6Q25.3) MUTATED | 17 | 3 | 12 |
DEL PEAK 10(6Q25.3) WILD-TYPE | 101 | 120 | 35 |
Figure S107. Get High-res Image Gene #17: 'del_6q25.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D17V6.png)
P value = 0.0278 (Fisher's exact test), Q value = 0.048
Table S108. Gene #17: 'del_6q25.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 10(6Q25.3) MUTATED | 4 | 5 | 5 | 10 | 8 | 0 |
DEL PEAK 10(6Q25.3) WILD-TYPE | 25 | 32 | 61 | 33 | 72 | 33 |
Figure S108. Get High-res Image Gene #17: 'del_6q25.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D17V7.png)
P value = 0.00269 (Fisher's exact test), Q value = 0.007
Table S109. Gene #18: 'del_9p21.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 11(9P21.3) MUTATED | 19 | 3 | 4 | 14 |
DEL PEAK 11(9P21.3) WILD-TYPE | 87 | 70 | 45 | 46 |
Figure S109. Get High-res Image Gene #18: 'del_9p21.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D18V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S110. Gene #18: 'del_9p21.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 11(9P21.3) MUTATED | 8 | 3 | 1 | 1 | 9 | 15 |
DEL PEAK 11(9P21.3) WILD-TYPE | 48 | 39 | 58 | 56 | 20 | 14 |
Figure S110. Get High-res Image Gene #18: 'del_9p21.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D18V2.png)
P value = 0.00112 (Fisher's exact test), Q value = 0.0035
Table S111. Gene #18: 'del_9p21.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 11(9P21.3) MUTATED | 3 | 5 | 19 | 3 |
DEL PEAK 11(9P21.3) WILD-TYPE | 36 | 61 | 46 | 40 |
Figure S111. Get High-res Image Gene #18: 'del_9p21.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D18V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S112. Gene #18: 'del_9p21.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 11(9P21.3) MUTATED | 1 | 1 | 5 | 5 | 28 |
DEL PEAK 11(9P21.3) WILD-TYPE | 31 | 89 | 65 | 27 | 36 |
Figure S112. Get High-res Image Gene #18: 'del_9p21.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D18V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S113. Gene #18: 'del_9p21.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 11(9P21.3) MUTATED | 20 | 0 | 20 |
DEL PEAK 11(9P21.3) WILD-TYPE | 98 | 123 | 27 |
Figure S113. Get High-res Image Gene #18: 'del_9p21.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D18V6.png)
P value = 0.0125 (Fisher's exact test), Q value = 0.025
Table S114. Gene #18: 'del_9p21.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 11(9P21.3) MUTATED | 4 | 4 | 4 | 11 | 16 | 1 |
DEL PEAK 11(9P21.3) WILD-TYPE | 25 | 33 | 62 | 32 | 64 | 32 |
Figure S114. Get High-res Image Gene #18: 'del_9p21.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D18V7.png)
P value = 0.0124 (Fisher's exact test), Q value = 0.025
Table S115. Gene #18: 'del_9p21.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 80 | 88 |
DEL PEAK 11(9P21.3) MUTATED | 10 | 10 | 20 |
DEL PEAK 11(9P21.3) WILD-TYPE | 110 | 70 | 68 |
Figure S115. Get High-res Image Gene #18: 'del_9p21.3' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
![](D18V8.png)
P value = 0.00111 (Fisher's exact test), Q value = 0.0035
Table S116. Gene #18: 'del_9p21.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 11(9P21.3) MUTATED | 9 | 4 | 20 |
DEL PEAK 11(9P21.3) WILD-TYPE | 62 | 71 | 56 |
Figure S116. Get High-res Image Gene #18: 'del_9p21.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D18V9.png)
P value = 6e-05 (Fisher's exact test), Q value = 0.00025
Table S117. Gene #18: 'del_9p21.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 11(9P21.3) MUTATED | 7 | 26 | 0 |
DEL PEAK 11(9P21.3) WILD-TYPE | 85 | 73 | 31 |
Figure S117. Get High-res Image Gene #18: 'del_9p21.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D18V10.png)
P value = 0.00016 (Fisher's exact test), Q value = 0.00061
Table S118. Gene #19: 'del_10q21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 12(10Q21.1) MUTATED | 2 | 3 | 0 | 2 | 7 | 5 |
DEL PEAK 12(10Q21.1) WILD-TYPE | 54 | 39 | 59 | 55 | 22 | 24 |
Figure S118. Get High-res Image Gene #19: 'del_10q21.1' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D19V2.png)
P value = 0.0422 (Fisher's exact test), Q value = 0.068
Table S119. Gene #19: 'del_10q21.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 12(10Q21.1) MUTATED | 1 | 4 | 10 | 1 |
DEL PEAK 12(10Q21.1) WILD-TYPE | 38 | 62 | 55 | 42 |
Figure S119. Get High-res Image Gene #19: 'del_10q21.1' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D19V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S120. Gene #19: 'del_10q21.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 12(10Q21.1) MUTATED | 0 | 0 | 5 | 1 | 13 |
DEL PEAK 12(10Q21.1) WILD-TYPE | 32 | 90 | 65 | 31 | 51 |
Figure S120. Get High-res Image Gene #19: 'del_10q21.1' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D19V5.png)
P value = 9e-04 (Fisher's exact test), Q value = 0.0029
Table S121. Gene #19: 'del_10q21.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 12(10Q21.1) MUTATED | 13 | 1 | 5 |
DEL PEAK 12(10Q21.1) WILD-TYPE | 105 | 122 | 42 |
Figure S121. Get High-res Image Gene #19: 'del_10q21.1' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D19V6.png)
P value = 0.0231 (Fisher's exact test), Q value = 0.041
Table S122. Gene #19: 'del_10q21.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 12(10Q21.1) MUTATED | 2 | 4 | 0 | 6 | 6 | 1 |
DEL PEAK 12(10Q21.1) WILD-TYPE | 27 | 33 | 66 | 37 | 74 | 32 |
Figure S122. Get High-res Image Gene #19: 'del_10q21.1' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D19V7.png)
P value = 0.0446 (Fisher's exact test), Q value = 0.071
Table S123. Gene #19: 'del_10q21.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 12(10Q21.1) MUTATED | 5 | 1 | 8 |
DEL PEAK 12(10Q21.1) WILD-TYPE | 66 | 74 | 68 |
Figure S123. Get High-res Image Gene #19: 'del_10q21.1' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D19V9.png)
P value = 0.00733 (Fisher's exact test), Q value = 0.015
Table S124. Gene #19: 'del_10q21.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 12(10Q21.1) MUTATED | 2 | 12 | 0 |
DEL PEAK 12(10Q21.1) WILD-TYPE | 90 | 87 | 31 |
Figure S124. Get High-res Image Gene #19: 'del_10q21.1' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D19V10.png)
P value = 0.00472 (Fisher's exact test), Q value = 0.011
Table S125. Gene #20: 'del_11q22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 13(11Q22.3) MUTATED | 7 | 3 | 2 | 4 | 9 | 5 |
DEL PEAK 13(11Q22.3) WILD-TYPE | 49 | 39 | 57 | 53 | 20 | 24 |
Figure S125. Get High-res Image Gene #20: 'del_11q22.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D20V2.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00022
Table S126. Gene #20: 'del_11q22.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 13(11Q22.3) MUTATED | 1 | 3 | 6 | 3 | 18 |
DEL PEAK 13(11Q22.3) WILD-TYPE | 31 | 87 | 64 | 29 | 46 |
Figure S126. Get High-res Image Gene #20: 'del_11q22.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D20V5.png)
P value = 0.00243 (Fisher's exact test), Q value = 0.0067
Table S127. Gene #20: 'del_11q22.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 13(11Q22.3) MUTATED | 17 | 5 | 9 |
DEL PEAK 13(11Q22.3) WILD-TYPE | 101 | 118 | 38 |
Figure S127. Get High-res Image Gene #20: 'del_11q22.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D20V6.png)
P value = 0.00672 (Fisher's exact test), Q value = 0.014
Table S128. Gene #20: 'del_11q22.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 13(11Q22.3) MUTATED | 6 | 3 | 15 |
DEL PEAK 13(11Q22.3) WILD-TYPE | 65 | 72 | 61 |
Figure S128. Get High-res Image Gene #20: 'del_11q22.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D20V9.png)
P value = 0.00271 (Fisher's exact test), Q value = 0.007
Table S129. Gene #20: 'del_11q22.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 13(11Q22.3) MUTATED | 6 | 18 | 0 |
DEL PEAK 13(11Q22.3) WILD-TYPE | 86 | 81 | 31 |
Figure S129. Get High-res Image Gene #20: 'del_11q22.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D20V10.png)
P value = 0.00047 (Fisher's exact test), Q value = 0.0016
Table S130. Gene #21: 'del_11q23.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 14(11Q23.3) MUTATED | 6 | 3 | 1 | 3 | 9 | 6 |
DEL PEAK 14(11Q23.3) WILD-TYPE | 50 | 39 | 58 | 54 | 20 | 23 |
Figure S130. Get High-res Image Gene #21: 'del_11q23.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D21V2.png)
P value = 0.041 (Fisher's exact test), Q value = 0.067
Table S131. Gene #21: 'del_11q23.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 14(11Q23.3) MUTATED | 3 | 3 | 13 | 4 |
DEL PEAK 14(11Q23.3) WILD-TYPE | 36 | 63 | 52 | 39 |
Figure S131. Get High-res Image Gene #21: 'del_11q23.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D21V4.png)
P value = 1e-04 (Fisher's exact test), Q value = 0.00039
Table S132. Gene #21: 'del_11q23.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 14(11Q23.3) MUTATED | 1 | 2 | 6 | 3 | 17 |
DEL PEAK 14(11Q23.3) WILD-TYPE | 31 | 88 | 64 | 29 | 47 |
Figure S132. Get High-res Image Gene #21: 'del_11q23.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D21V5.png)
P value = 0.00159 (Fisher's exact test), Q value = 0.0046
Table S133. Gene #21: 'del_11q23.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 14(11Q23.3) MUTATED | 17 | 4 | 8 |
DEL PEAK 14(11Q23.3) WILD-TYPE | 101 | 119 | 39 |
Figure S133. Get High-res Image Gene #21: 'del_11q23.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D21V6.png)
P value = 0.0319 (Fisher's exact test), Q value = 0.054
Table S134. Gene #21: 'del_11q23.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 14(11Q23.3) MUTATED | 2 | 2 | 3 | 9 | 12 | 1 |
DEL PEAK 14(11Q23.3) WILD-TYPE | 27 | 35 | 63 | 34 | 68 | 32 |
Figure S134. Get High-res Image Gene #21: 'del_11q23.3' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D21V7.png)
P value = 0.0148 (Fisher's exact test), Q value = 0.028
Table S135. Gene #21: 'del_11q23.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 14(11Q23.3) MUTATED | 6 | 3 | 14 |
DEL PEAK 14(11Q23.3) WILD-TYPE | 65 | 72 | 62 |
Figure S135. Get High-res Image Gene #21: 'del_11q23.3' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D21V9.png)
P value = 0.00573 (Fisher's exact test), Q value = 0.013
Table S136. Gene #21: 'del_11q23.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 14(11Q23.3) MUTATED | 6 | 17 | 0 |
DEL PEAK 14(11Q23.3) WILD-TYPE | 86 | 82 | 31 |
Figure S136. Get High-res Image Gene #21: 'del_11q23.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D21V10.png)
P value = 0.00016 (Fisher's exact test), Q value = 0.00061
Table S137. Gene #22: 'del_14q11.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 15(14Q11.2) MUTATED | 23 | 2 | 10 | 16 |
DEL PEAK 15(14Q11.2) WILD-TYPE | 83 | 71 | 39 | 44 |
Figure S137. Get High-res Image Gene #22: 'del_14q11.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D22V1.png)
P value = 0.00119 (Fisher's exact test), Q value = 0.0036
Table S138. Gene #22: 'del_14q11.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 15(14Q11.2) MUTATED | 13 | 5 | 4 | 5 | 8 | 11 |
DEL PEAK 15(14Q11.2) WILD-TYPE | 43 | 37 | 55 | 52 | 21 | 18 |
Figure S138. Get High-res Image Gene #22: 'del_14q11.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D22V2.png)
P value = 0.00447 (Fisher's exact test), Q value = 0.01
Table S139. Gene #22: 'del_14q11.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 15(14Q11.2) MUTATED | 6 | 7 | 20 | 3 |
DEL PEAK 15(14Q11.2) WILD-TYPE | 33 | 59 | 45 | 40 |
Figure S139. Get High-res Image Gene #22: 'del_14q11.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D22V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S140. Gene #22: 'del_14q11.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 15(14Q11.2) MUTATED | 4 | 4 | 11 | 6 | 26 |
DEL PEAK 15(14Q11.2) WILD-TYPE | 28 | 86 | 59 | 26 | 38 |
Figure S140. Get High-res Image Gene #22: 'del_14q11.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D22V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S141. Gene #22: 'del_14q11.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 15(14Q11.2) MUTATED | 24 | 8 | 19 |
DEL PEAK 15(14Q11.2) WILD-TYPE | 94 | 115 | 28 |
Figure S141. Get High-res Image Gene #22: 'del_14q11.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D22V6.png)
P value = 0.0148 (Fisher's exact test), Q value = 0.028
Table S142. Gene #22: 'del_14q11.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 15(14Q11.2) MUTATED | 11 | 25 | 2 |
DEL PEAK 15(14Q11.2) WILD-TYPE | 81 | 74 | 29 |
Figure S142. Get High-res Image Gene #22: 'del_14q11.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D22V10.png)
P value = 2e-05 (Fisher's exact test), Q value = 9.8e-05
Table S143. Gene #23: 'del_14q24.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 16(14Q24.2) MUTATED | 23 | 1 | 8 | 18 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 83 | 72 | 41 | 42 |
Figure S143. Get High-res Image Gene #23: 'del_14q24.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D23V1.png)
P value = 4e-05 (Fisher's exact test), Q value = 0.00018
Table S144. Gene #23: 'del_14q24.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 16(14Q24.2) MUTATED | 15 | 4 | 3 | 4 | 9 | 11 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 41 | 38 | 56 | 53 | 20 | 18 |
Figure S144. Get High-res Image Gene #23: 'del_14q24.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D23V2.png)
P value = 0.0237 (Fisher's exact test), Q value = 0.042
Table S145. Gene #23: 'del_14q24.2' versus Molecular Subtype #3: 'RPPA_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 75 | 82 | 56 |
DEL PEAK 16(14Q24.2) MUTATED | 20 | 9 | 7 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 55 | 73 | 49 |
Figure S145. Get High-res Image Gene #23: 'del_14q24.2' versus Molecular Subtype #3: 'RPPA_CNMF'
![](D23V3.png)
P value = 0.00271 (Fisher's exact test), Q value = 0.007
Table S146. Gene #23: 'del_14q24.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 16(14Q24.2) MUTATED | 7 | 6 | 20 | 3 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 32 | 60 | 45 | 40 |
Figure S146. Get High-res Image Gene #23: 'del_14q24.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D23V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S147. Gene #23: 'del_14q24.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 16(14Q24.2) MUTATED | 4 | 3 | 9 | 7 | 27 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 28 | 87 | 61 | 25 | 37 |
Figure S147. Get High-res Image Gene #23: 'del_14q24.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D23V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S148. Gene #23: 'del_14q24.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 16(14Q24.2) MUTATED | 24 | 7 | 19 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 94 | 116 | 28 |
Figure S148. Get High-res Image Gene #23: 'del_14q24.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D23V6.png)
P value = 0.0243 (Fisher's exact test), Q value = 0.043
Table S149. Gene #23: 'del_14q24.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 16(14Q24.2) MUTATED | 2 | 5 | 7 | 14 | 18 | 4 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 27 | 32 | 59 | 29 | 62 | 29 |
Figure S149. Get High-res Image Gene #23: 'del_14q24.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D23V7.png)
P value = 0.0153 (Fisher's exact test), Q value = 0.029
Table S150. Gene #23: 'del_14q24.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 16(14Q24.2) MUTATED | 14 | 6 | 19 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 57 | 69 | 57 |
Figure S150. Get High-res Image Gene #23: 'del_14q24.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D23V9.png)
P value = 0.00357 (Fisher's exact test), Q value = 0.0085
Table S151. Gene #23: 'del_14q24.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 16(14Q24.2) MUTATED | 12 | 26 | 1 |
DEL PEAK 16(14Q24.2) WILD-TYPE | 80 | 73 | 30 |
Figure S151. Get High-res Image Gene #23: 'del_14q24.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D23V10.png)
P value = 0.00282 (Fisher's exact test), Q value = 0.0072
Table S152. Gene #24: 'del_15q13.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 17(15Q13.3) MUTATED | 14 | 2 | 5 | 14 |
DEL PEAK 17(15Q13.3) WILD-TYPE | 92 | 71 | 44 | 46 |
Figure S152. Get High-res Image Gene #24: 'del_15q13.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D24V1.png)
P value = 3e-05 (Fisher's exact test), Q value = 0.00014
Table S153. Gene #24: 'del_15q13.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 17(15Q13.3) MUTATED | 10 | 3 | 1 | 3 | 5 | 11 |
DEL PEAK 17(15Q13.3) WILD-TYPE | 46 | 39 | 58 | 54 | 24 | 18 |
Figure S153. Get High-res Image Gene #24: 'del_15q13.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D24V2.png)
P value = 0.0312 (Fisher's exact test), Q value = 0.053
Table S154. Gene #24: 'del_15q13.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 17(15Q13.3) MUTATED | 4 | 5 | 16 | 4 |
DEL PEAK 17(15Q13.3) WILD-TYPE | 35 | 61 | 49 | 39 |
Figure S154. Get High-res Image Gene #24: 'del_15q13.3' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D24V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S155. Gene #24: 'del_15q13.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 17(15Q13.3) MUTATED | 1 | 3 | 6 | 5 | 20 |
DEL PEAK 17(15Q13.3) WILD-TYPE | 31 | 87 | 64 | 27 | 44 |
Figure S155. Get High-res Image Gene #24: 'del_15q13.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D24V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S156. Gene #24: 'del_15q13.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 17(15Q13.3) MUTATED | 16 | 4 | 15 |
DEL PEAK 17(15Q13.3) WILD-TYPE | 102 | 119 | 32 |
Figure S156. Get High-res Image Gene #24: 'del_15q13.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D24V6.png)
P value = 0.0174 (Fisher's exact test), Q value = 0.032
Table S157. Gene #24: 'del_15q13.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 17(15Q13.3) MUTATED | 11 | 18 | 0 |
DEL PEAK 17(15Q13.3) WILD-TYPE | 81 | 81 | 31 |
Figure S157. Get High-res Image Gene #24: 'del_15q13.3' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D24V10.png)
P value = 0.00306 (Fisher's exact test), Q value = 0.0077
Table S158. Gene #25: 'del_16q24.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 18(16Q24.2) MUTATED | 2 | 3 | 0 | 0 | 3 | 4 |
DEL PEAK 18(16Q24.2) WILD-TYPE | 54 | 39 | 59 | 57 | 26 | 25 |
Figure S158. Get High-res Image Gene #25: 'del_16q24.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D25V2.png)
P value = 0.00573 (Fisher's exact test), Q value = 0.013
Table S159. Gene #25: 'del_16q24.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 18(16Q24.2) MUTATED | 0 | 0 | 4 | 1 | 7 |
DEL PEAK 18(16Q24.2) WILD-TYPE | 32 | 90 | 66 | 31 | 57 |
Figure S159. Get High-res Image Gene #25: 'del_16q24.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D25V5.png)
P value = 0.0021 (Fisher's exact test), Q value = 0.0059
Table S160. Gene #25: 'del_16q24.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 18(16Q24.2) MUTATED | 8 | 0 | 4 |
DEL PEAK 18(16Q24.2) WILD-TYPE | 110 | 123 | 43 |
Figure S160. Get High-res Image Gene #25: 'del_16q24.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D25V6.png)
P value = 0.0259 (Fisher's exact test), Q value = 0.045
Table S161. Gene #25: 'del_16q24.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 71 | 75 | 76 |
DEL PEAK 18(16Q24.2) MUTATED | 6 | 0 | 5 |
DEL PEAK 18(16Q24.2) WILD-TYPE | 65 | 75 | 71 |
Figure S161. Get High-res Image Gene #25: 'del_16q24.2' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
![](D25V9.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S162. Gene #26: 'del_19p13.3' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 19(19P13.3) MUTATED | 3 | 1 | 4 | 15 |
DEL PEAK 19(19P13.3) WILD-TYPE | 103 | 72 | 45 | 45 |
Figure S162. Get High-res Image Gene #26: 'del_19p13.3' versus Molecular Subtype #1: 'CN_CNMF'
![](D26V1.png)
P value = 0.003 (Fisher's exact test), Q value = 0.0076
Table S163. Gene #26: 'del_19p13.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 19(19P13.3) MUTATED | 3 | 3 | 2 | 3 | 9 | 2 |
DEL PEAK 19(19P13.3) WILD-TYPE | 53 | 39 | 57 | 54 | 20 | 27 |
Figure S163. Get High-res Image Gene #26: 'del_19p13.3' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D26V2.png)
P value = 0.00396 (Fisher's exact test), Q value = 0.0094
Table S164. Gene #26: 'del_19p13.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 19(19P13.3) MUTATED | 0 | 2 | 9 | 2 | 10 |
DEL PEAK 19(19P13.3) WILD-TYPE | 32 | 88 | 61 | 30 | 54 |
Figure S164. Get High-res Image Gene #26: 'del_19p13.3' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D26V5.png)
P value = 0.00442 (Fisher's exact test), Q value = 0.01
Table S165. Gene #26: 'del_19p13.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 19(19P13.3) MUTATED | 17 | 4 | 2 |
DEL PEAK 19(19P13.3) WILD-TYPE | 101 | 119 | 45 |
Figure S165. Get High-res Image Gene #26: 'del_19p13.3' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D26V6.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S166. Gene #27: 'del_19q13.42' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 20(19Q13.42) MUTATED | 2 | 0 | 5 | 12 |
DEL PEAK 20(19Q13.42) WILD-TYPE | 104 | 73 | 44 | 48 |
Figure S166. Get High-res Image Gene #27: 'del_19q13.42' versus Molecular Subtype #1: 'CN_CNMF'
![](D27V1.png)
P value = 0.00068 (Fisher's exact test), Q value = 0.0023
Table S167. Gene #27: 'del_19q13.42' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 20(19Q13.42) MUTATED | 3 | 3 | 0 | 3 | 8 | 2 |
DEL PEAK 20(19Q13.42) WILD-TYPE | 53 | 39 | 59 | 54 | 21 | 27 |
Figure S167. Get High-res Image Gene #27: 'del_19q13.42' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D27V2.png)
P value = 8e-05 (Fisher's exact test), Q value = 0.00033
Table S168. Gene #27: 'del_19q13.42' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 20(19Q13.42) MUTATED | 0 | 0 | 5 | 2 | 12 |
DEL PEAK 20(19Q13.42) WILD-TYPE | 32 | 90 | 65 | 30 | 52 |
Figure S168. Get High-res Image Gene #27: 'del_19q13.42' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D27V5.png)
P value = 0.00344 (Fisher's exact test), Q value = 0.0084
Table S169. Gene #27: 'del_19q13.42' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 20(19Q13.42) MUTATED | 14 | 2 | 3 |
DEL PEAK 20(19Q13.42) WILD-TYPE | 104 | 121 | 44 |
Figure S169. Get High-res Image Gene #27: 'del_19q13.42' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D27V6.png)
P value = 0.00658 (Fisher's exact test), Q value = 0.014
Table S170. Gene #27: 'del_19q13.42' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 20(19Q13.42) MUTATED | 0 | 6 | 1 | 5 | 7 | 0 |
DEL PEAK 20(19Q13.42) WILD-TYPE | 29 | 31 | 65 | 38 | 73 | 33 |
Figure S170. Get High-res Image Gene #27: 'del_19q13.42' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D27V7.png)
P value = 0.00231 (Fisher's exact test), Q value = 0.0065
Table S171. Gene #28: 'del_22q12.2' versus Molecular Subtype #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 106 | 73 | 49 | 60 |
DEL PEAK 21(22Q12.2) MUTATED | 24 | 6 | 13 | 20 |
DEL PEAK 21(22Q12.2) WILD-TYPE | 82 | 67 | 36 | 40 |
Figure S171. Get High-res Image Gene #28: 'del_22q12.2' versus Molecular Subtype #1: 'CN_CNMF'
![](D28V1.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S172. Gene #28: 'del_22q12.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 42 | 59 | 57 | 29 | 29 |
DEL PEAK 21(22Q12.2) MUTATED | 9 | 8 | 1 | 6 | 22 | 14 |
DEL PEAK 21(22Q12.2) WILD-TYPE | 47 | 34 | 58 | 51 | 7 | 15 |
Figure S172. Get High-res Image Gene #28: 'del_22q12.2' versus Molecular Subtype #2: 'METHLYATION_CNMF'
![](D28V2.png)
P value = 0.00637 (Fisher's exact test), Q value = 0.014
Table S173. Gene #28: 'del_22q12.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 66 | 65 | 43 |
DEL PEAK 21(22Q12.2) MUTATED | 4 | 12 | 25 | 10 |
DEL PEAK 21(22Q12.2) WILD-TYPE | 35 | 54 | 40 | 33 |
Figure S173. Get High-res Image Gene #28: 'del_22q12.2' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
![](D28V4.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S174. Gene #28: 'del_22q12.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 90 | 70 | 32 | 64 |
DEL PEAK 21(22Q12.2) MUTATED | 2 | 5 | 16 | 7 | 33 |
DEL PEAK 21(22Q12.2) WILD-TYPE | 30 | 85 | 54 | 25 | 31 |
Figure S174. Get High-res Image Gene #28: 'del_22q12.2' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
![](D28V5.png)
P value = 1e-05 (Fisher's exact test), Q value = 5.4e-05
Table S175. Gene #28: 'del_22q12.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 21(22Q12.2) MUTATED | 36 | 9 | 18 |
DEL PEAK 21(22Q12.2) WILD-TYPE | 82 | 114 | 29 |
Figure S175. Get High-res Image Gene #28: 'del_22q12.2' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
![](D28V6.png)
P value = 5e-05 (Fisher's exact test), Q value = 0.00022
Table S176. Gene #28: 'del_22q12.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 29 | 37 | 66 | 43 | 80 | 33 |
DEL PEAK 21(22Q12.2) MUTATED | 3 | 14 | 8 | 20 | 14 | 4 |
DEL PEAK 21(22Q12.2) WILD-TYPE | 26 | 23 | 58 | 23 | 66 | 29 |
Figure S176. Get High-res Image Gene #28: 'del_22q12.2' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
![](D28V7.png)
P value = 0.00646 (Fisher's exact test), Q value = 0.014
Table S177. Gene #28: 'del_22q12.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 92 | 99 | 31 |
DEL PEAK 21(22Q12.2) MUTATED | 21 | 28 | 1 |
DEL PEAK 21(22Q12.2) WILD-TYPE | 71 | 71 | 30 |
Figure S177. Get High-res Image Gene #28: 'del_22q12.2' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
![](D28V10.png)
-
Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/22533930/transformed.cor.cli.txt
-
Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRP-TP/22542911/KIRP-TP.transferedmergedcluster.txt
-
Number of patients = 288
-
Number of significantly focal cnvs = 28
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.