Association of mutation, copy number alteration, and subtype markers with pathways
Lung Adenocarcinoma (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
Maintained by Spring Yingchun Liu (Broad Institute)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): Association of mutation, copy number alteration, and subtype markers with pathways. Broad Institute of MIT and Harvard. doi:10.7908/C1M044V1
- Overview
+ Introduction
- Summary

There are 54 genes with significant mutation (Q value <= 0.1) and 473 genes with significant copy number alteration (Q value <= 0.25). The identified marker genes (Q value <= 0.01 or within top 2000) are 2000 for subtype 1, 2000 for subtype 2, 2000 for subtype 3, 2000 for subtype 4, 2000 for subtype 5, 2000 for subtype 6, 2000 for subtype 7. Pathways significantly enriched with these genes (Q value <= 0.01) are identified :

38 pathways significantly enriched with genes with copy number alteration or mutation.

0 pathways significantly enriched with marker genes of gene expression subtype 1

0 pathways significantly enriched with marker genes of gene expression subtype 2

0 pathways significantly enriched with marker genes of gene expression subtype 3

0 pathways significantly enriched with marker genes of gene expression subtype 4

0 pathways significantly enriched with marker genes of gene expression subtype 5

0 pathways significantly enriched with marker genes of gene expression subtype 6

0 pathways significantly enriched with marker genes of gene expression subtype 7

- Results
+ The top five pathways enriched with genes with copy number alteration or mutation
+ The top five pathways enriched with marker genes of gene expression subtype 1
+ The top five pathways enriched with marker genes of gene expression subtype 2
+ The top five pathways enriched with marker genes of gene expression subtype 3
+ The top five pathways enriched with marker genes of gene expression subtype 4
+ The top five pathways enriched with marker genes of gene expression subtype 5
+ The top five pathways enriched with marker genes of gene expression subtype 6
+ The top five pathways enriched with marker genes of gene expression subtype 7
+ Methods & Data