PARADIGM pathway analysis of mRNASeq expression data
Testicular Germ Cell Tumors (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): PARADIGM pathway analysis of mRNASeq expression data. Broad Institute of MIT and Harvard. doi:10.7908/C1VT1RK6
- Overview
+ Introduction
- Summary

There were 39 significant pathways identified in this analysis.

Table 1.  Get Full Table Top 10 out of 131 pathways in order of significance.

Pathway.Name Avg.Num.Perturbations
FOXA2 and FOXA3 transcription factor networks 32
Signaling events mediated by the Hedgehog family 25
IL23-mediated signaling events 25
Syndecan-1-mediated signaling events 22
Ephrin A reverse signaling 22
IL4-mediated signaling events 22
Wnt signaling 20
amb2 Integrin signaling 17
Syndecan-4-mediated signaling events 17
Glypican 1 network 16
- Results
+ Summary Table
+ Inferred Pathway Levels Matrix
+ Methods & Data