Clustering of miRseq precursor expression: consensus hierarchical
Uveal Melanoma (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
Maintained by Hailei Zhang (Broad Institute)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): Clustering of miRseq precursor expression: consensus hierarchical. Broad Institute of MIT and Harvard. doi:10.7908/C17080XC
- Overview
+ Introduction
- Summary

Median absolute deviation (MAD) was used to select 134 most variable miRs. Consensus ward linkage hierarchical clustering of 80 samples and 134 miRs identified 4 subtypes with the stability of the clustering increasing for k = 2 to k = 10.

- Results
+ miR expression patterns of molecular subtypes
+ Silhouette widths, Cophenetic Correlation Coefficients and Consensus matrix
+ Samples assignment with silhouette width
+ Marker miRs of each subtype
+ Methods & Data