		Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1q gain	8 (10%)	72	0.81432	0.895	0.49412	0.684	0.80323	0.887	0.80262	0.887	0.37358	0.569	0.058759	0.228	0.83779	0.908	0.95172	0.991
2p gain	10 (12%)	70	0.02862	0.145	0.54917	0.737	0.059099	0.228	0.11689	0.341	0.22388	0.45	0.85098	0.92	0.70558	0.843	0.00312	0.0256
2q gain	8 (10%)	72	0.01069	0.0658	0.22244	0.45	0.053829	0.222	0.1113	0.332	0.059259	0.228	0.19398	0.415	0.29797	0.506	7.9999e-05	0.0011
4p gain	7 (9%)	73	0.00143	0.0133	0.24464	0.469	0.14349	0.361	0.12036	0.341	0.32934	0.531	0.3679	0.568	0.32634	0.531	0.43295	0.637
4q gain	4 (5%)	76	0.0057499	0.0442	0.3087	0.513	0.099399	0.331	0.34488	0.542	0.62759	0.789	0.82582	0.901	0.78946	0.883	0.6275	0.789
5p gain	3 (4%)	77	0.18833	0.412	0.1795	0.406	0.2904	0.505	0.10894	0.332	0.2807	0.496	0.27842	0.496	0.48703	0.679	0.77022	0.88
5q gain	3 (4%)	77	0.18749	0.412	0.17952	0.406	0.29212	0.505	0.10754	0.332	0.28137	0.496	0.27662	0.496	0.4878	0.679	0.77186	0.88
6p gain	38 (48%)	42	0.04158	0.179	0.0066999	0.0496	0.00034	0.00389	0.00013	0.00168	2e-05	0.000308	9.9999e-06	0.000174	0.00027	0.00318	9.9999e-06	0.000174
6q gain	16 (20%)	64	0.6038	0.781	0.01439	0.0822	0.0191	0.105	0.00101	0.0101	0.00088999	0.00913	2e-04	0.00242	0.01006	0.0643	0.00088999	0.00913
7p gain	9 (11%)	71	0.24544	0.469	0.40323	0.602	1	1	0.7411	0.877	0.3396	0.539	0.18079	0.406	0.89853	0.958	0.46511	0.662
7q gain	8 (10%)	72	0.10278	0.332	0.11972	0.341	0.95705	0.994	0.44793	0.649	0.37326	0.569	0.33039	0.531	0.97365	1	0.77805	0.883
8p gain	39 (49%)	41	9.9999e-06	0.000174	0.00011	0.00147	0.00108	0.0105	5.9999e-05	0.000857	0.00275	0.0239	0.00051999	0.00562	0.03165	0.154	0.0082599	0.056
8q gain	53 (66%)	27	9.9999e-06	0.000174	2e-05	0.000308	0.00017	0.00212	9.9999e-06	0.000174	2e-05	0.000308	9.9999e-06	0.000174	0.0099499	0.0643	5.9999e-05	0.000857
9p gain	5 (6%)	75	0.48174	0.679	0.092579	0.325	0.2947	0.505	0.22486	0.45	0.28788	0.503	1	1	0.29825	0.506	0.56578	0.757
9q gain	4 (5%)	76	0.80417	0.887	0.16247	0.385	0.67816	0.827	0.53661	0.723	0.3303	0.531	0.75463	0.88	0.28639	0.502	0.47319	0.669
11p gain	10 (12%)	70	0.0082399	0.056	0.16273	0.385	0.73047	0.867	0.38273	0.577	0.6457	0.804	0.30938	0.513	0.13414	0.358	0.0063799	0.0482
11q gain	10 (12%)	70	0.098979	0.331	0.72678	0.865	1	1	0.82865	0.901	0.69894	0.84	0.11649	0.341	0.094239	0.328	0.03826	0.169
12p gain	3 (4%)	77	0.14078	0.358	0.18005	0.406	0.10486	0.332	0.01013	0.0643	0.091029	0.322	0.27121	0.496	0.10972	0.332	0.13966	0.358
12q gain	3 (4%)	77	0.13983	0.358	0.18176	0.406	0.10534	0.332	0.0091899	0.0613	0.090329	0.322	0.27362	0.496	0.10899	0.332	0.13782	0.358
13q gain	6 (8%)	74	0.02509	0.132	0.68263	0.83	0.87806	0.942	0.75122	0.88	0.91433	0.964	0.5191	0.705	0.00156	0.0139	0.0077699	0.0553
14q gain	3 (4%)	77	0.1415	0.358	1	1	0.10448	0.332	0.32582	0.531	0.91619	0.964	0.59202	0.776	0.68885	0.832	0.5834	0.769
16p gain	4 (5%)	76	1	1	0.45474	0.652	0.82831	0.901	0.43826	0.642	0.78797	0.883	0.47362	0.669	0.38654	0.579	0.74834	0.88
17p gain	8 (10%)	72	0.00035	0.00389	0.26048	0.487	0.45713	0.653	0.21708	0.45	0.60247	0.781	0.058009	0.228	0.1887	0.412	0.03959	0.172
17q gain	9 (11%)	71	0.00146	0.0133	0.22299	0.45	0.32977	0.531	0.30618	0.513	0.5319	0.719	0.0283	0.145	0.28133	0.496	0.0383	0.169
20p gain	8 (10%)	72	0.096819	0.331	0.27977	0.496	0.1053	0.332	0.21955	0.45	0.92696	0.971	0.23866	0.466	0.20427	0.432	0.11871	0.341
20q gain	9 (11%)	71	0.069079	0.255	0.61645	0.788	0.04229	0.18	0.057809	0.228	0.68545	0.831	0.15642	0.379	0.23784	0.466	0.42696	0.63
21q gain	14 (18%)	66	0.03305	0.157	0.16769	0.392	0.069469	0.255	0.01354	0.0785	0.37326	0.569	0.29568	0.505	0.15087	0.374	0.10591	0.332
22q gain	5 (6%)	75	0.13436	0.358	0.12303	0.344	0.10686	0.332	0.071759	0.261	0.12809	0.346	0.24606	0.469	0.00313	0.0256	0.033	0.157
xp gain	10 (12%)	70	0.18969	0.412	0.03628	0.168	0.79553	0.886	0.1404	0.358	0.053259	0.222	0.37399	0.569	0.03693	0.168	0.098469	0.331
xq gain	9 (11%)	71	0.25979	0.487	0.11093	0.332	0.62877	0.789	0.02	0.108	0.055099	0.223	0.1023	0.332	0.098359	0.331	0.03156	0.154
1p loss	19 (24%)	61	0.3031	0.512	0.26177	0.487	0.078519	0.283	0.6625	0.813	0.9668	1	0.27944	0.496	0.01486	0.0837	0.03019	0.151
1q loss	3 (4%)	77	0.38227	0.577	0.1788	0.406	0.16164	0.385	0.32503	0.531	0.19235	0.414	0.04572	0.193	0.16683	0.392	0.01196	0.0714
3p loss	43 (54%)	37	9.9999e-06	0.000174	9.9999e-06	0.000174	9.9999e-06	0.000174	9.9999e-06	0.000174	9.9999e-06	0.000174	9.9999e-06	0.000174	9.9999e-06	0.000174	9.9999e-06	0.000174
3q loss	43 (54%)	37	9.9999e-06	0.000174	9.9999e-06	0.000174	9.9999e-06	0.000174	9.9999e-06	0.000174	9.9999e-06	0.000174	9.9999e-06	0.000174	9.9999e-06	0.000174	9.9999e-06	0.000174
4q loss	3 (4%)	77	0.78867	0.883	0.77118	0.88	0.89217	0.954	0.60514	0.781	0.91618	0.964	0.27381	0.496	0.64228	0.803	0.3093	0.513
5q loss	3 (4%)	77	0.78777	0.883	0.11903	0.341	0.24563	0.469	0.17001	0.395	0.45512	0.652	0.87089	0.939	0.03855	0.169	0.58211	0.769
6q loss	17 (21%)	63	9.9999e-06	0.000174	0.01053	0.0658	0.19045	0.412	0.00465	0.0365	0.12001	0.341	0.22849	0.452	0.03374	0.159	0.00384	0.0307
8p loss	4 (5%)	76	0.80532	0.887	0.75564	0.88	0.62266	0.789	0.67364	0.824	0.44666	0.649	0.62939	0.789	0.69349	0.836	0.34525	0.542
8q loss	3 (4%)	77	0.4845	0.679	0.66027	0.813	1	1	0.78912	0.883	0.7622	0.88	0.77186	0.88	0.94968	0.991	0.58462	0.769
9p loss	8 (10%)	72	0.00138	0.0131	0.12742	0.346	0.33771	0.538	0.15365	0.377	0.33608	0.538	0.35455	0.55	0.21727	0.45	0.29277	0.505
9q loss	7 (9%)	73	0.0076899	0.0553	0.12648	0.346	0.70622	0.843	0.23889	0.466	0.42225	0.626	0.58439	0.769	0.15134	0.374	0.4495	0.649
12p loss	3 (4%)	77	0.64921	0.804	0.6619	0.813	0.24151	0.469	0.79009	0.883	0.6095	0.781	0.51967	0.705	0.90364	0.961	0.77002	0.88
13q loss	3 (4%)	77	0.87474	0.941	0.18135	0.406	0.3516	0.549	0.60232	0.781	0.60875	0.781	1	1	0.48916	0.679	0.31455	0.52
15q loss	4 (5%)	76	0.34274	0.542	0.25132	0.476	1	1	0.82664	0.901	0.44814	0.649	0.91033	0.964	0.51509	0.703	0.62908	0.789
16p loss	3 (4%)	77	0.2596	0.487	0.49951	0.687	0.35339	0.55	0.60031	0.781	0.7614	0.88	1	1	1	1	1	1
16q loss	16 (20%)	64	0.0218	0.116	0.02772	0.144	0.15443	0.377	0.01313	0.0772	0.19491	0.415	0.12612	0.346	0.069199	0.255	0.16053	0.385
19p loss	3 (4%)	77	0.2215	0.45	0.064149	0.244	0.50293	0.689	1	1	0.76082	0.88	0.22475	0.45	0.12384	0.344	0.13966	0.358
19q loss	3 (4%)	77	0.22377	0.45	0.064939	0.245	0.49922	0.687	1	1	0.75998	0.88	0.22805	0.452	0.12337	0.344	0.13928	0.358
xp loss	12 (15%)	68	0.18545	0.412	0.055149	0.223	0.40578	0.603	0.26513	0.491	0.9265	0.971	0.58036	0.769	0.03682	0.168	0.01119	0.0678
xq loss	13 (16%)	67	0.27343	0.496	0.01551	0.0862	0.21848	0.45	0.14647	0.366	0.64904	0.804	0.38358	0.577	0.0078799	0.0553	0.00313	0.0256
