The snp6_samples_with_reverse_qc__2012_08_24.txt file represents a set of snp6 samples resubmitted by Broad GCC (circa Aug 15 2012) to clear up a QC issue. The list was sent to me (mnoble) by Andrew Cherniak, as a way of validating that PANCAN8 freeze v2 indeed contains these 23 samples. Note that the row beginnining with FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_D11_190610 was removed, because it had no other columns. Per Andy (2012_08_24): >> This sample begins with TCGA in its identifier, but doesn't seem to be a >> normal TCGA sample. I'm not sure exactly what this is; maybe Gordon knows