Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	11LU035_TP	C3N-00203_TP	C3N-00433_TP	C3N-00546_TP	C3N-00580_TP	C3N-02003_TP	C3N-02087_TP	C3N-02379_TP	C3N-02423_TP	C3N-02424_TP	C3N-02529_TP	
Amplification Peak 1	8q24.21	chr8:128110002-128200000(probes 131792:131802)	chr8:128160001-128190000(probes 131798:131801)	chr8:128120001-128239999(probes 131793:131807)	0.19883	 0.19883		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	2	0	1	1	0	0	2	2	1	2	
Amplification Peak 2	11q13.3	chr11:68860001-70080000(probes 160424:160548)  	chr11:68870001-69120000(probes 160425:160450)  	chr11:68870001-69650000(probes 160425:160502)  	0.15529	 0.15529		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	1	0	0	1	2	0	2	1	2	0	
Amplification Peak 3	14q13.3	chr14:36600001-36760000(probes 192036:192055)  	chr14:36610001-36650000(probes 192037:192041)  	chr14:36610001-36780000(probes 192037:192057)  	0.19157	 0.19157		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	1	0	0	1	0	2	1	1	1	1	
Amplification Peak 4	Xq28   	chrX:154320001-154470000(probes 257134:257143)	chrX:154330001-154460000(probes 257135:257142)	chrX:154330001-154490000(probes 257135:257145)	0.21213	 0.21213		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	2	0	2	2	0	0	1	1	0	0	
Deletion Peak 1	9p21.3  	chr9:21030001-24549999(probes 134764:135099)  	chr9:21950001-22010000(probes 134849:134854)  	chr9:21050001-24060000(probes 134766:135056)  	0.014129	  0.014129		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	1	1	1	1	0	1	
Deletion Peak 2	21p11.2 	chr21:7820001-8989999(probes 238036:238170)    	chr21:8380001-8459999(probes 238103:238110)    	chr21:8380001-8510000(probes 238103:238116)    	0.014129	  0.014129		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	1	0	1	0	1	1	1	0	0	
Deletion Peak 3	22q13.31	chr22:43850001-50818468(probes 244762:245254)	chr22:43860001-50818467(probes 244763:245253)	chr22:43890001-43910000(probes 244766:244767)	0.052578	  0.052578		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	0	0	0	1	0	1	
Deletion Peak 4	Yq11.223	chrY:23190001-23940000(probes 259555:259634)  	chrY:23200001-23309999(probes 259556:259568)  	chrY:23230001-23309999(probes 259559:259568)  	0.0067694	 0.0067694		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	1	1	1	0	0	0	1	1	1	
Amplification Peak 1 - CN values	8q24.21	chr8:128110002-128200000(probes 131792:131802)	chr8:128160001-128190000(probes 131798:131801)	chr8:128120001-128239999(probes 131793:131807)	0.19883	 0.19883		Actual Copy Change Given	0.1747	1.5065	-0.014029	0.37906	0.792	0.087678	0	2.1611	0.90781	0.69972	1.4147	
Amplification Peak 2 - CN values	11q13.3	chr11:68860001-70080000(probes 160424:160548)  	chr11:68870001-69120000(probes 160425:160450)  	chr11:68870001-69650000(probes 160425:160502)  	0.15529	 0.15529		Actual Copy Change Given	0.18992	0.1244	-0.036807	0.033037	0.24078	1.2258	-0.011589	3.6569	0.15639	1.9316	-0.14956	
Amplification Peak 3 - CN values	14q13.3	chr14:36600001-36760000(probes 192036:192055)  	chr14:36610001-36650000(probes 192037:192041)  	chr14:36610001-36780000(probes 192037:192057)  	0.19157	 0.19157		Actual Copy Change Given	0.10304	0.38905	-0.037509	0.0071127	0.63779	0.019684	3.6569	0.72179	0.14075	0.34939	0.27082	
Amplification Peak 4 - CN values	Xq28   	chrX:154320001-154470000(probes 257134:257143)	chrX:154330001-154460000(probes 257135:257142)	chrX:154330001-154490000(probes 257135:257145)	0.21213	 0.21213		Actual Copy Change Given	0.10432	2.5273	0.0024393	1.4035	1.8264	0.068226	0.083404	0.26042	0.17917	-0.045398	0.044191	
Deletion Peak 1 - CN values	9p21.3  	chr9:21030001-24549999(probes 134764:135099)  	chr9:21950001-22010000(probes 134849:134854)  	chr9:21050001-24060000(probes 134766:135056)  	0.014129	  0.014129		Actual Copy Change Given	-0.090295	-0.1193	-0.014096	0.13288	0.27314	-0.21537	-0.22078	-0.84414	-0.52321	-0.053889	-0.22862	
Deletion Peak 2 - CN values	21p11.2 	chr21:7820001-8989999(probes 238036:238170)    	chr21:8380001-8459999(probes 238103:238110)    	chr21:8380001-8510000(probes 238103:238116)    	0.014129	  0.014129		Actual Copy Change Given	-0.72313	0.10941	-0.12295	-0.060095	-0.85278	-0.018738	-0.19368	-0.30265	-0.168	0.085644	8.8888e-05	
Deletion Peak 3 - CN values	22q13.31	chr22:43850001-50818468(probes 244762:245254)	chr22:43860001-50818467(probes 244763:245253)	chr22:43890001-43910000(probes 244766:244767)	0.052578	  0.052578		Actual Copy Change Given	-0.33777	-0.35552	-0.074227	0.030138	-0.92293	-0.0092493	0.11244	-0.0092486	-0.14445	0.14311	-0.18558	
Deletion Peak 4 - CN values	Yq11.223	chrY:23190001-23940000(probes 259555:259634)  	chrY:23200001-23309999(probes 259556:259568)  	chrY:23230001-23309999(probes 259559:259568)  	0.0067694	 0.0067694		Actual Copy Change Given	-0.65244	-0.053577	-0.18298	-0.79037	-1.2124	0.056727	1.1855	0.34451	-0.76161	-0.96958	-0.15054