Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	C3L-00094_TP	C3L-00913_TP	C3L-01632_TP	C3L-02345_TP	C3N-00180_TP	C3N-00217_TP	C3N-00547_TP	C3N-01016_TP	C3N-02089_TP	C3N-02155_TP	
Amplification Peak 1	11q13.3	chr11:68840001-70000000(probes 159746:159860)	chr11:68850001-69680000(probes 159747:159827)	chr11:68850001-70020000(probes 159747:159862)	0.035381	   0.035381		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	1	1	2	1	1	1	0	
Amplification Peak 2	14q13.3	chr14:35850001-37820000(probes 191339:191548)	chr14:35860001-37130000(probes 191340:191476)	chr14:31500001-38840000(probes 190913:191644)	0.00072526	 0.00072526		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	0	0	1	1	1	2	0	2	
Deletion Peak 1	9p23   	chr9:10620001-14620000(probes 133222:133474)  	chr9:12680001-13449999(probes 133287:133355)  	chr9:12700001-13700000(probes 133289:133380)  	0.055391	 0.055391		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	1	1	1	0	0	0	1	
Deletion Peak 2	13q11  	chr13:1-20140000(probes 177566:179512)              	chr13:18180002-18250000(probes 179402:179408)	chr13:18060001-18360000(probes 179388:179421)	0.018693	 0.018693		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	1	1	1	
Deletion Peak 3	13q31.1	chr13:71860002-91399999(probes 184059:185964)	chr13:79860001-79930000(probes 184846:184852)	chr13:79880001-80030000(probes 184848:184863)	0.06422	 0.063154		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	0	0	1	1	1	
Deletion Peak 4	17p11.2	chr17:13010001-27130000(probes 213910:214938)	chr17:14230001-18119999(probes 214021:214240)	chr17:14240001-15680000(probes 214022:214023)	0.018693	 0.018693		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	0	1	1	1	1	0	1	
Deletion Peak 5	21p11.2	chr21:7820001-8989999(probes 237316:237450)    	chr21:8420002-8459999(probes 237387:237389)    	chr21:8020001-8700000(probes 237339:237418)    	0.018693	 0.018693		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	0	1	1	1	1	1	
Deletion Peak 6	22p11.2	chr22:10960001-16940000(probes 241601:242065)	chr22:11880002-11969999(probes 241706:241713)	chr22:11730001-12179999(probes 241689:241738)	0.021148	 0.020717		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	1	1	0	1	0	1	
Amplification Peak 1 - CN values	11q13.3	chr11:68840001-70000000(probes 159746:159860)	chr11:68850001-69680000(probes 159747:159827)	chr11:68850001-70020000(probes 159747:159862)	0.035381	   0.035381		Actual Copy Change Given	0.055175	0.2078	-0.11796	0.4176	0.6941	3.6569	0.46236	0.71377	0.37768	0.051973	
Amplification Peak 2 - CN values	14q13.3	chr14:35850001-37820000(probes 191339:191548)	chr14:35860001-37130000(probes 191340:191476)	chr14:31500001-38840000(probes 190913:191644)	0.00072526	 0.00072526		Actual Copy Change Given	3.6569	-0.13162	0.034181	-0.067116	0.71278	0.5629	0.38508	2.8302	-0.18255	3.6569	
Deletion Peak 1 - CN values	9p23   	chr9:10620001-14620000(probes 133222:133474)  	chr9:12680001-13449999(probes 133287:133355)  	chr9:12700001-13700000(probes 133289:133380)  	0.055391	 0.055391		Actual Copy Change Given	-0.00087244	-0.14789	-0.34599	-0.37781	-1.2929	-0.59852	-0.067483	-0.049539	0.19762	-0.35105	
Deletion Peak 2 - CN values	13q11  	chr13:1-20140000(probes 177566:179512)              	chr13:18180002-18250000(probes 179402:179408)	chr13:18060001-18360000(probes 179388:179421)	0.018693	 0.018693		Actual Copy Change Given	-0.31433	-0.39002	0.032644	-0.03407	-0.40593	-0.32587	0.083686	-0.16605	-0.46318	-0.63917	
Deletion Peak 3 - CN values	13q31.1	chr13:71860002-91399999(probes 184059:185964)	chr13:79860001-79930000(probes 184846:184852)	chr13:79880001-80030000(probes 184848:184863)	0.06422	 0.063154		Actual Copy Change Given	-0.0020778	-0.15452	0.032644	-0.03407	-1.2929	0.53433	-0.076471	-0.45065	-0.20449	-0.33696	
Deletion Peak 4 - CN values	17p11.2	chr17:13010001-27130000(probes 213910:214938)	chr17:14230001-18119999(probes 214021:214240)	chr17:14240001-15680000(probes 214022:214023)	0.018693	 0.018693		Actual Copy Change Given	0.092482	-0.13487	-0.12717	0.12431	-0.75995	-0.58339	-0.60455	-0.16329	0.047149	-0.59803	
Deletion Peak 5 - CN values	21p11.2	chr21:7820001-8989999(probes 237316:237450)    	chr21:8420002-8459999(probes 237387:237389)    	chr21:8020001-8700000(probes 237339:237418)    	0.018693	 0.018693		Actual Copy Change Given	-0.5045	-0.15806	0.0028755	-0.11979	-0.063452	-0.53075	-0.29766	-0.89207	-0.47204	-0.35975	
Deletion Peak 6 - CN values	22p11.2	chr22:10960001-16940000(probes 241601:242065)	chr22:11880002-11969999(probes 241706:241713)	chr22:11730001-12179999(probes 241689:241738)	0.021148	 0.020717		Actual Copy Change Given	-0.36326	-0.059855	-0.00085536	-0.012219	-0.67363	-0.3014	-0.067137	-0.27009	0.057449	-0.67694