GISTIC identifies genomic regions that are significantly gained or

lost across a set of tumors. The pipeline first filters out normal

samples from the segmented copy-number data by inspecting the TCGA

There were 109 tumor samples used in this analysis:  27 significant arm-level results, 27 significant focal amplifications, and 24 significant focal deletions were found.

Q value (bottom). The green line represents the significance

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 14q13.3.

Genes in bold are cancer genes as defined by  <a href="http://www.sanger.ac.uk/genetics/CGP/Census/">The Sanger Institute: Cancer Gene Census</a>

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 8q24.21.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 5p15.33.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 7p11.2.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 11q13.3.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 1q21.2.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for Xq27.3.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 19q12.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 8q24.3.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 20q13.33.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 4q12.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 17q23.1.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 20q13.2.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 12p11.21.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 1p34.2.