GISTIC identifies genomic regions that are significantly gained or

lost across a set of tumors. The pipeline first filters out normal

samples from the segmented copy-number data by inspecting the TCGA

There were 55 tumor samples used in this analysis:  26 significant arm-level results, 17 significant focal amplifications, and 20 significant focal deletions were found.

Q value (bottom). The green line represents the significance

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 14q13.3.

Genes in bold are cancer genes as defined by  <a href="http://www.sanger.ac.uk/genetics/CGP/Census/">The Sanger Institute: Cancer Gene Census</a>

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 8q24.21.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 12q15.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 1q21.3.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 11q13.3.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 5p15.33.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 1p34.2.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 19q12.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 5q35.3.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 17q25.1.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for Xq27.3.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 7p21.2.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 8q24.3.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for Yq12.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 8p12.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for Xq25.