Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	C3L-00094_TP	C3L-00095_TP	C3L-00412_TP	C3L-01862_TP	C3L-01889_TP	C3L-02345_TP	C3L-02549_TP	C3N-00180_TP	C3N-00217_TP	C3N-00547_TP	C3N-00549_TP	C3N-01016_TP	C3N-01023_TP	C3N-01074_TP	C3N-01410_TP	C3N-01414_TP	C3N-01823_TP	C3N-01842_TP	C3N-02089_TP	C3N-02149_TP	
Amplification Peak 1	1p34.2 	chr1:37490001-40470000(probes 3163:3457)      	chr1:40130001-40350000(probes 3424:3446)      	chr1:39810001-40490000(probes 3389:3459)      	0.1013	     0.1013		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	2	
Amplification Peak 2	8q21.13	chr8:78350001-81420000(probes 127169:127475)  	chr8:80650001-80670000(probes 127397:127399)  	chr8:80570001-80730000(probes 127388:127406)  	0.14368	    0.14368		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	0	2	0	0	2	2	1	1	0	2	2	1	0	1	1	1	
Amplification Peak 3	11q13.3	chr11:68840001-70000000(probes 160823:160939)	chr11:69210001-69680000(probes 160862:160906)	chr11:68850001-70020000(probes 160824:160941)	0.0082882	  0.0082882		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	1	0	1	2	1	1	1	1	0	2	1	1	0	1	1	
Amplification Peak 4	14q13.3	chr14:35220002-36590000(probes 192521:192659)	chr14:36110001-36390000(probes 192609:192638)	chr14:27620001-40179999(probes 191741:192991)	1.8667e-08	 1.8667e-08		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	1	0	0	0	0	0	1	1	1	0	2	2	2	2	0	2	1	0	2	
Deletion Peak 1	9p21.3 	chr9:21860001-22450000(probes 135181:135242)	chr9:21950002-22019999(probes 135193:135198)  	chr9:21870001-22280000(probes 135182:135226)  	0.010746	 0.010746		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	0	1	1	1	1	0	1	0	0	1	0	0	1	1	1	0	
Deletion Peak 2	13q11  	chr13:1-20140000(probes 178752:180712)            	chr13:18180002-18250000(probes 180596:180603)	chr13:18210002-18230000(probes 180600:180601)	0.051384	 0.051384		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	1	1	1	0	0	1	1	1	0	1	1	0	1	0	
Deletion Peak 3	21p11.2	chr21:7820001-8989999(probes 238964:239104)  	chr21:8380001-8459999(probes 239034:239042)    	chr21:8380001-8700000(probes 239034:239071)    	0.010746	 0.010746		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	0	0	1	1	
Amplification Peak 1 - CN values	1p34.2 	chr1:37490001-40470000(probes 3163:3457)      	chr1:40130001-40350000(probes 3424:3446)      	chr1:39810001-40490000(probes 3389:3459)      	0.1013	     0.1013		Actual Copy Change Given	-0.20532	0.047574	-0.1096	0.0014379	0.0093645	-0.18429	0.00098702	0.043032	0.33358	0	-0.5346	3.6569	-0.25736	0.030315	-0.30681	-0.22951	-0.081325	0.013808	0.054162	2.0563	
Amplification Peak 2 - CN values	8q21.13	chr8:78350001-81420000(probes 127169:127475)  	chr8:80650001-80670000(probes 127397:127399)  	chr8:80570001-80730000(probes 127388:127406)  	0.14368	    0.14368		Actual Copy Change Given	-0.064423	0.391	0.014265	-0.0071691	0.0149	1.7273	0.0027939	0.057901	0.93277	1.8687	0.46563	0.70638	0	3.6569	1.8537	0.737	0	0.47638	0.5701	0.17535	
Amplification Peak 3 - CN values	11q13.3	chr11:68840001-70000000(probes 160823:160939)	chr11:69210001-69680000(probes 160862:160906)	chr11:68850001-70020000(probes 160824:160941)	0.0082882	  0.0082882		Actual Copy Change Given	0.055175	0.048326	0.0085258	-0.0031371	-0.011722	0.4176	-0.00014997	0.6941	3.6569	0.46236	0.43567	0.71377	0.37003	0.042472	1.7049	0.23427	0.20578	0.010523	0.37768	0.13605	
Amplification Peak 4 - CN values	14q13.3	chr14:35220002-36590000(probes 192521:192659)	chr14:36110001-36390000(probes 192609:192638)	chr14:27620001-40179999(probes 191741:192991)	1.8667e-08	 1.8667e-08		Actual Copy Change Given	3.6569	0.31664	0.059196	0	-0.0029134	-0.067116	-0.32892	0.71278	0.55826	0.38508	-0.029184	2.8302	3.2368	1.0094	2.8308	-0.0077285	2.5364	0.46422	-0.18255	0.94593	
Deletion Peak 1 - CN values	9p21.3 	chr9:21860001-22450000(probes 135181:135242)	chr9:21950002-22019999(probes 135193:135198)  	chr9:21870001-22280000(probes 135182:135226)  	0.010746	 0.010746		Actual Copy Change Given	-0.19795	-0.12441	-0.14101	-0.69294	-0.052344	-0.37781	-0.6837	-1.2929	-0.30252	-0.067483	-0.53541	-0.049539	-0.034681	-0.60164	0.89435	-0.013022	-0.22958	-0.45472	-0.19252	0.10255	
Deletion Peak 2 - CN values	13q11  	chr13:1-20140000(probes 178752:180712)            	chr13:18180002-18250000(probes 180596:180603)	chr13:18210002-18230000(probes 180600:180601)	0.051384	 0.051384		Actual Copy Change Given	-0.31433	0.026644	0.018435	-0.010196	-0.0025292	-0.03407	-0.43777	-0.40593	-0.3289	0.083686	0.048624	-0.16605	-0.53686	-0.38947	-0.036051	-0.29132	-0.4275	-0.007296	-0.46318	-0.014152	
Deletion Peak 3 - CN values	21p11.2	chr21:7820001-8989999(probes 238964:239104)  	chr21:8380001-8459999(probes 239034:239042)    	chr21:8380001-8700000(probes 239034:239071)    	0.010746	 0.010746		Actual Copy Change Given	-0.5045	-0.12457	-0.28746	-0.10419	-0.010718	-0.11979	-0.12536	-0.063452	-0.5334	-0.29766	-0.6511	-0.89207	-0.42985	-0.17636	-0.27337	-0.23116	-0.0047488	0.20957	-0.47204	-0.32025