GISTIC identifies genomic regions that are significantly gained or

lost across a set of tumors. The pipeline first filters out normal

samples from the segmented copy-number data by inspecting the TCGA

There were 59 tumor samples used in this analysis:  26 significant arm-level results, 15 significant focal amplifications, and 18 significant focal deletions were found.

Q value (bottom). The green line represents the significance

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 8q24.21.

Genes in bold are cancer genes as defined by  <a href="http://www.sanger.ac.uk/genetics/CGP/Census/">The Sanger Institute: Cancer Gene Census</a>

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 7p11.2.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for Xq28.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 11q13.3.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 5p15.33.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 19q12.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 1q21.3.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 17q12.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 12p11.21.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 6p21.1.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 3q26.2.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 7q11.21.

Amplifications Table - 15 significant amplifications found. Click the link in the last column to view a comprehensive list of candidate genes. If no genes were identified within the peak, the nearest gene appears in brackets.

This is the comprehensive list of <strong>deleted</strong> genes in the wide peak for 9p21.3.