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main
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  adding: all_lesions.txt (deflated 69%)
  adding: all_thresholded.by_genes.txt (deflated 95%)
  adding: amp_genes.txt (deflated 71%)
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  adding: broad_values_by_arm.txt (deflated 83%)
  adding: D.cap1.5.mat (deflated 5%)
  adding: dcc_archive_manifest.tsv (deflated 62%)
  adding: dcc_archive.properties (stored 0%)
  adding: del_genes.txt (deflated 60%)
  adding: del_qplot.fig (deflated 76%)
  adding: del_qplot.pdf (deflated 8%)
  adding: del_qplot.png (deflated 7%)
  adding: focal_data_by_genes.txt (deflated 98%)
  adding: focal_input.seg.txt (deflated 75%)
  adding: freqarms_vs_ngenes.pdf (deflated 33%)
  adding: gene_stats.mat (deflated 6%)
  adding: gistic2.refgene.hg38.UCSC.add_miR.160920.mat (deflated 2%)
  adding: hg38_GDC_SNP6_CNV_list.161107.txt (deflated 71%)
  adding: nozzle.html (deflated 81%)
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  adding: orig_stats.mat (deflated 18%)
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  adding: regions_track.bed (deflated 63%)
  adding: sample_cutoffs.txt (deflated 73%)
  adding: scores.gistic (deflated 77%)
  adding: script (deflated 77%)
  adding: segmented_data.mat (deflated 7%)
  adding: stderr (stored 0%)
  adding: stdout (deflated 87%)
  adding: table_amp.txt (deflated 52%)
  adding: table_del.txt (deflated 54%)
	zip warning: ignoring FIFO (Named Pipe) - use -FI to read: tmp.6a6133de/out.6
	zip warning: ignoring FIFO (Named Pipe) - use -FI to read: tmp.6a6133de/err.6
updating: orig_stats.mat (deflated 18%)
updating: del_qplot.pdf (deflated 8%)
updating: all_thresholded.by_genes.txt (deflated 95%)
updating: amp_genes.txt (deflated 71%)
updating: stdout