Archive:  /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/correlate_genomic_event_clinical.zip
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V10.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V13.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V6.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V12.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V15.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V7.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V3.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V12.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V3.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V17.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V11.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V16.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V9.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V4.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V12.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V12.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V5.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V4.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V9.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V3.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V16.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V13.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V16.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V10.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V16.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V6.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V15.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V8.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V4.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V11.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V15.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V14.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V11.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V14.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V7.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V2.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V5.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V9.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V1.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V6.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V8.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V10.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V2.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V5.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V7.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V17.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V15.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V6.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V13.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V17.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V14.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V5.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V10.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V7.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V14.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V8.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V1.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V8.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V17.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V3.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V9.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V1.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V11.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V13.pdf  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V2.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V1.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V4.png  
  inflating: /cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V2.pdf  
[1] "R version 3.3.2 (2016-10-31)"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/analysis.results.RData"
[1] "CLI_CLUS"
                           V1                            V2 
  "DAYS_TO_DEATH_OR_LAST_FUP"           "HISTOLOGICAL_TYPE" 
                           V3                            V4 
           "HISTOLOGIC_GRADE" "KARNOFSKY_PERFORMANCE_SCORE" 
                           V5                            V6 
          "PATHOLOGY_T_STAGE"           "PATHOLOGY_N_STAGE" 
                           V7                            V8 
           "PATHOLOGIC_STAGE"              "YEARS_TO_BIRTH" 
                           V9                           V10 
                  "ETHNICITY"                      "GENDER" 
                          V11                           V12 
                       "RACE"           "RADIATION_THERAPY" 
                          V13                           V14 
                        "BMI"    "NUMBER_PACK_YEARS_SMOKED" 
                          V15                           V16 
                     "SMOKER"           "COUNTRY_OF_ORIGIN" 
                          V17 
                "ORIGIN_ASIA" 
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V1.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V2.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V3.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V4.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V5.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V6.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V7.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V8.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V9.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V10.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V11.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V12.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V13.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V14.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V15.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V16.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D1V17.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V1.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V2.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V3.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V4.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V5.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V6.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V7.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V8.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V9.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V10.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V11.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V12.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V13.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V14.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V15.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V16.png"
[1] TRUE
[1] "symlink"
[1] "/cromwell_root/fc-e7058367-eaa6-44b5-aab5-1ec08acf146a/a5576ec1-417d-4f38-91ab-8144cba9b161/correlate_genomic_events/2b20f37d-184b-4f47-8170-73e898ad05ea/call-correlate_genomic_event_clinical/D2V17.png"
[1] TRUE
  adding: D1V10.pdf (deflated 19%)
  adding: D1V10.png (deflated 15%)
  adding: D1V11.pdf (deflated 17%)
  adding: D1V11.png (deflated 12%)
  adding: D1V12.pdf (deflated 9%)
  adding: D1V12.png (deflated 12%)
  adding: D1V13.pdf (deflated 16%)
  adding: D1V13.png (deflated 13%)
  adding: D1V14.pdf (deflated 10%)
  adding: D1V14.png (deflated 8%)
  adding: D1V15.pdf (deflated 18%)
  adding: D1V15.png (deflated 13%)
  adding: D1V16.pdf (deflated 15%)
  adding: D1V16.png (deflated 14%)
  adding: D1V17.pdf (deflated 18%)
  adding: D1V17.png (deflated 14%)
  adding: D1V1.pdf (deflated 10%)
  adding: D1V1.png (deflated 14%)
  adding: D1V2.pdf (deflated 15%)
  adding: D1V2.png (deflated 13%)
  adding: D1V3.pdf (deflated 17%)
  adding: D1V3.png (deflated 13%)
  adding: D1V4.pdf (deflated 10%)
  adding: D1V4.png (deflated 9%)
  adding: D1V5.pdf (deflated 18%)
  adding: D1V5.png (deflated 15%)
  adding: D1V6.pdf (deflated 9%)
  adding: D1V6.png (deflated 14%)
  adding: D1V7.pdf (deflated 16%)
  adding: D1V7.png (deflated 17%)
  adding: D1V8.pdf (deflated 10%)
  adding: D1V8.png (deflated 10%)
  adding: D1V9.pdf (deflated 9%)
  adding: D1V9.png (deflated 15%)
  adding: D2V10.pdf (deflated 18%)
  adding: D2V10.png (deflated 14%)
  adding: D2V11.pdf (deflated 17%)
  adding: D2V11.png (deflated 12%)
  adding: D2V12.pdf (deflated 9%)
  adding: D2V12.png (deflated 12%)
  adding: D2V13.pdf (deflated 17%)
  adding: D2V13.png (deflated 13%)
  adding: D2V14.pdf (deflated 10%)
  adding: D2V14.png (deflated 7%)
  adding: D2V15.pdf (deflated 18%)
  adding: D2V15.png (deflated 12%)
  adding: D2V16.pdf (deflated 15%)
  adding: D2V16.png (deflated 14%)
  adding: D2V17.pdf (deflated 18%)
  adding: D2V17.png (deflated 14%)
  adding: D2V1.pdf (deflated 10%)
  adding: D2V1.png (deflated 13%)
  adding: D2V2.pdf (deflated 15%)
  adding: D2V2.png (deflated 13%)
  adding: D2V3.pdf (deflated 17%)
  adding: D2V3.png (deflated 13%)
  adding: D2V4.pdf (deflated 10%)
  adding: D2V4.png (deflated 8%)
  adding: D2V5.pdf (deflated 18%)
  adding: D2V5.png (deflated 14%)
  adding: D2V6.pdf (deflated 9%)
  adding: D2V6.png (deflated 14%)
  adding: D2V7.pdf (deflated 16%)
  adding: D2V7.png (deflated 15%)
  adding: D2V8.pdf (deflated 10%)
  adding: D2V8.png (deflated 11%)
  adding: D2V9.pdf (deflated 9%)
  adding: D2V9.png (deflated 15%)
  adding: nozzle.html (deflated 76%)
  adding: nozzle.RData (deflated 3%)
  adding: script (deflated 67%)
  adding: stderr (stored 0%)
  adding: stdout (deflated 95%)
  adding: table.1.txt (deflated 65%)
	zip warning: ignoring FIFO (Named Pipe) - use -FI to read: tmp.13a21e80/out.5
	zip warning: ignoring FIFO (Named Pipe) - use -FI to read: tmp.13a21e80/err.5
updating: D1V10.pdf (deflated 19%)
updating: D2V13.png (deflated 13%)
updating: D2V6.pdf (deflated 9%)
updating: D1V12.png (deflated 12%)
updating: D2V15.pdf (deflated 18%)
updating: D2V7.png (deflated 15%)
updating: D2V3.png (deflated 13%)
updating: D2V12.pdf (deflated 9%)
updating: D1V3.png (deflated 13%)
updating: D2V17.png (deflated 14%)
updating: D2V11.pdf (deflated 17%)
updating: D1V16.png (deflated 14%)
updating: D2V9.pdf (deflated 9%)
updating: D1V4.pdf (deflated 10%)
updating: D2V12.png (deflated 12%)
updating: D1V12.pdf (deflated 9%)
updating: D1V5.png (deflated 15%)
updating: D2V4.pdf (deflated 10%)
updating: D1V9.png (deflated 15%)
updating: D1V3.pdf (deflated 17%)
updating: D2V16.png (deflated 14%)
updating: D1V13.png (deflated 13%)
updating: D1V16.pdf (deflated 15%)
updating: D2V10.pdf (deflated 18%)
updating: D2V16.pdf (deflated 15%)
updating: D2V6.png (deflated 14%)
updating: D1V15.pdf (deflated 18%)
updating: D2V8.png (deflated 11%)
updating: D1V4.png (deflated 9%)
updating: D2V11.png (deflated 12%)
updating: stderr (stored 0%)
updating: D2V15.png (deflated 12%)
updating: D2V14.png (deflated 7%)
updating: D1V11.png (deflated 12%)
updating: D1V14.png (deflated 8%)
updating: D2V7.pdf (deflated 16%)
updating: D2V2.pdf (deflated 15%)
updating: D2V5.png (deflated 14%)
updating: D1V9.pdf (deflated 9%)
updating: D1V1.pdf (deflated 10%)
updating: D1V6.png (deflated 14%)
updating: D1V8.png (deflated 10%)
updating: D2V10.png (deflated 14%)
updating: D2V2.png (deflated 13%)
updating: D1V5.pdf (deflated 18%)
updating: D1V7.png (deflated 17%)
updating: D1V17.pdf (deflated 18%)
updating: D1V15.png (deflated 13%)
updating: D1V6.pdf (deflated 9%)
updating: D1V13.pdf (deflated 16%)
updating: D1V17.png (deflated 14%)
updating: D2V14.pdf (deflated 10%)
updating: script (deflated 67%)
updating: D2V5.pdf (deflated 18%)
updating: D1V10.png (deflated 15%)
updating: stdout