[1] "R version 3.2.2 (2015-08-14)"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  MRNASEQ_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                            Clinical feature             
DAYS_TO_DEATH_OR_LAST_FUP   "DAYS_TO_DEATH_OR_LAST_FUP"  
HISTOLOGICAL_TYPE           "HISTOLOGICAL_TYPE"          
HISTOLOGIC_GRADE            "HISTOLOGIC_GRADE"           
KARNOFSKY_PERFORMANCE_SCORE "KARNOFSKY_PERFORMANCE_SCORE"
PATHOLOGY_T_STAGE           "PATHOLOGY_T_STAGE"          
PATHOLOGY_N_STAGE           "PATHOLOGY_N_STAGE"          
PATHOLOGIC_STAGE            "PATHOLOGIC_STAGE"           
YEARS_TO_BIRTH              "YEARS_TO_BIRTH"             
ETHNICITY                   "ETHNICITY"                  
GENDER                      "GENDER"                     
RACE                        "RACE"                       
RADIATION_THERAPY           "RADIATION_THERAPY"          
BMI                         "BMI"                        
NUMBER_PACK_YEARS_SMOKED    "NUMBER_PACK_YEARS_SMOKED"   
SMOKER                      "SMOKER"                     
COUNTRY_OF_ORIGIN           "COUNTRY_OF_ORIGIN"          
ORIGIN_ASIA                 "ORIGIN_ASIA"                
                            Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP   "Cox regression test"       "N=2"            
HISTOLOGICAL_TYPE           "Kruskal-Wallis test"       "N=30"           
HISTOLOGIC_GRADE            "Kruskal-Wallis test"       "N=30"           
KARNOFSKY_PERFORMANCE_SCORE "Spearman correlation test" "N=30"           
PATHOLOGY_T_STAGE           "Spearman correlation test" "N=30"           
PATHOLOGY_N_STAGE           "Spearman correlation test" "N=0"            
PATHOLOGIC_STAGE            "Kruskal-Wallis test"       "N=30"           
YEARS_TO_BIRTH              "Spearman correlation test" "N=30"           
ETHNICITY                   "Wilcoxon test"             "N=0"            
GENDER                      "Wilcoxon test"             "N=9"            
RACE                        "Kruskal-Wallis test"       "N=0"            
RADIATION_THERAPY           "Wilcoxon test"             "N=0"            
BMI                         "Kruskal-Wallis test"       "N=30"           
NUMBER_PACK_YEARS_SMOKED    "Spearman correlation test" "N=1"            
SMOKER                      "Wilcoxon test"             "N=30"           
COUNTRY_OF_ORIGIN           "Kruskal-Wallis test"       "N=30"           
ORIGIN_ASIA                 "Wilcoxon test"             "N=30"           
                            Associated with                  
DAYS_TO_DEATH_OR_LAST_FUP   " "                              
HISTOLOGICAL_TYPE           " "                              
HISTOLOGIC_GRADE            " "                              
KARNOFSKY_PERFORMANCE_SCORE "higher score"                   
PATHOLOGY_T_STAGE           "higher stage"                   
PATHOLOGY_N_STAGE           " "                              
PATHOLOGIC_STAGE            " "                              
YEARS_TO_BIRTH              "older"                          
ETHNICITY                   " "                              
GENDER                      "male"                           
RACE                        " "                              
RADIATION_THERAPY           " "                              
BMI                         " "                              
NUMBER_PACK_YEARS_SMOKED    "higher number_pack_years_smoked"
SMOKER                      "smoker"                         
COUNTRY_OF_ORIGIN           " "                              
ORIGIN_ASIA                 "western"                        
                            &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP   "N=NA"                                                                                    
HISTOLOGICAL_TYPE           " "                                                                                       
HISTOLOGIC_GRADE            " "                                                                                       
KARNOFSKY_PERFORMANCE_SCORE "N=20"                                                                                    
PATHOLOGY_T_STAGE           "N=9"                                                                                     
PATHOLOGY_N_STAGE           " "                                                                                       
PATHOLOGIC_STAGE            " "                                                                                       
YEARS_TO_BIRTH              "N=30"                                                                                    
ETHNICITY                   " "                                                                                       
GENDER                      "N=9"                                                                                     
RACE                        " "                                                                                       
RADIATION_THERAPY           " "                                                                                       
BMI                         " "                                                                                       
NUMBER_PACK_YEARS_SMOKED    "N=1"                                                                                     
SMOKER                      "N=30"                                                                                    
COUNTRY_OF_ORIGIN           " "                                                                                       
ORIGIN_ASIA                 "N=30"                                                                                    
                            Associated with                        
DAYS_TO_DEATH_OR_LAST_FUP   " "                              "N=NA"
HISTOLOGICAL_TYPE           " "                              " "   
HISTOLOGIC_GRADE            " "                              " "   
KARNOFSKY_PERFORMANCE_SCORE "lower score"                    "N=10"
PATHOLOGY_T_STAGE           "lower stage"                    "N=21"
PATHOLOGY_N_STAGE           " "                              " "   
PATHOLOGIC_STAGE            " "                              " "   
YEARS_TO_BIRTH              "younger"                        "N=0" 
ETHNICITY                   " "                              " "   
GENDER                      "female"                         "N=0" 
RACE                        " "                              " "   
RADIATION_THERAPY           " "                              " "   
BMI                         " "                              " "   
NUMBER_PACK_YEARS_SMOKED    "lower number_pack_years_smoked" "N=0" 
SMOKER                      "non-smoker"                     "N=0" 
COUNTRY_OF_ORIGIN           " "                              " "   
ORIGIN_ASIA                 "asian"                          "N=0" 
[1] "vtyp==survival in basici table generation"
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
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