Clinical Features	MRNA_CHIERARCHICAL		LINCRNA_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	32 (29%)	78	0.02287	0.124	0.02861	0.139
1q gain	66 (60%)	44	0.29869	0.502	0.45464	0.654
2p gain	23 (21%)	87	0.0055499	0.0662	0.01863	0.114
2q gain	21 (19%)	89	0.01667	0.11	0.03533	0.156
3p gain	10 (9%)	100	0.76482	0.855	0.83889	0.901
3q gain	18 (16%)	92	0.6071	0.744	0.48681	0.67
4p gain	8 (7%)	102	1	1	0.80754	0.884
4q gain	7 (6%)	103	0.41587	0.608	0.13003	0.291
5p gain	57 (52%)	53	0.40854	0.602	0.2097	0.398
5q gain	26 (24%)	84	0.01563	0.11	0.00038	0.0361
6p gain	20 (18%)	90	0.77686	0.863	0.32593	0.534
6q gain	10 (9%)	100	1	1	0.64439	0.774
7p gain	58 (53%)	52	0.03008	0.139	0.0097399	0.0839
7q gain	48 (44%)	62	0.02055	0.117	0.0323	0.146
8p gain	20 (18%)	90	0.2007	0.389	0.86082	0.919
8q gain	34 (31%)	76	0.60382	0.744	0.96504	0.996
9p gain	7 (6%)	103	0.53404	0.704	0.28863	0.494
9q gain	5 (5%)	105	1	1	0.72973	0.834
10p gain	15 (14%)	95	0.085989	0.234	0.27597	0.485
10q gain	7 (6%)	103	0.35479	0.564	0.04078	0.161
11p gain	21 (19%)	89	0.28347	0.492	0.15986	0.337
11q gain	24 (22%)	86	0.8366	0.901	0.56117	0.725
12p gain	23 (21%)	87	0.03983	0.161	0.11292	0.27
12q gain	22 (20%)	88	0.087339	0.234	0.23197	0.42
13p gain	7 (6%)	103	0.53727	0.704	0.47695	0.661
13q gain	4 (4%)	106	0.6872	0.796	0.46936	0.659
14p gain	26 (24%)	84	0.80532	0.884	0.71657	0.825
14q gain	27 (25%)	83	0.95991	0.996	0.14248	0.311
15p gain	9 (8%)	101	0.1093	0.27	0.18906	0.382
16p gain	37 (34%)	73	0.00023	0.0361	0.00248	0.0581
16q gain	28 (25%)	82	0.02597	0.136	0.090879	0.24
17p gain	22 (20%)	88	0.59267	0.744	0.68434	0.796
17q gain	30 (27%)	80	0.89056	0.935	0.15634	0.334
18p gain	8 (7%)	102	0.01695	0.11	0.076529	0.229
18q gain	7 (6%)	103	0.04327	0.164	0.2261	0.413
19p gain	14 (13%)	96	0.19602	0.384	0.31411	0.524
19q gain	15 (14%)	95	0.26645	0.473	0.38428	0.579
20p gain	24 (22%)	86	0.04717	0.175	0.04001	0.161
20q gain	29 (26%)	81	0.054579	0.189	0.1697	0.35
21p gain	4 (4%)	106	0.36306	0.564	0.3775	0.574
21q gain	16 (15%)	94	0.39611	0.593	0.04946	0.175
22p gain	4 (4%)	106	0.68689	0.796	0.47175	0.659
22q gain	3 (3%)	107	0.3326	0.54	0.25917	0.465
xp gain	46 (42%)	64	0.03653	0.156	0.88404	0.933
xq gain	49 (45%)	61	0.10344	0.262	0.96985	0.996
yp gain	24 (22%)	86	0.065729	0.208	0.22022	0.406
yq gain	17 (15%)	93	0.36477	0.564	0.74963	0.843
1p loss	16 (15%)	94	0.0266	0.136	0.01228	0.0897
1q loss	6 (5%)	104	0.55857	0.725	0.6529	0.775
2p loss	8 (7%)	102	0.57391	0.733	0.47159	0.659
2q loss	10 (9%)	100	0.36178	0.564	0.36904	0.565
3p loss	36 (33%)	74	0.00372	0.0622	0.02988	0.139
3q loss	27 (25%)	83	0.0062799	0.0662	0.00301	0.0581
4p loss	19 (17%)	91	0.064049	0.207	0.19078	0.382
4q loss	19 (17%)	91	0.064319	0.207	0.069189	0.216
5p loss	7 (6%)	103	0.215	0.401	0.15047	0.325
5q loss	19 (17%)	91	0.00163	0.0581	0.00243	0.0581
6p loss	19 (17%)	91	0.11264	0.27	0.12254	0.281
6q loss	31 (28%)	79	0.13608	0.301	0.1188	0.279
7p loss	8 (7%)	102	0.46001	0.657	0.16673	0.348
7q loss	9 (8%)	101	0.67482	0.796	0.12699	0.287
8p loss	33 (30%)	77	0.19554	0.384	0.21519	0.401
8q loss	15 (14%)	95	0.28506	0.492	0.29487	0.5
9p loss	53 (48%)	57	0.53758	0.704	0.36506	0.564
9q loss	54 (49%)	56	0.5348	0.704	0.52697	0.704
10p loss	26 (24%)	84	0.081469	0.231	0.11382	0.27
10q loss	28 (25%)	82	0.04962	0.175	0.02713	0.136
11p loss	27 (25%)	83	0.01016	0.0839	0.01099	0.087
11q loss	22 (20%)	88	0.12121	0.281	0.17514	0.358
12p loss	24 (22%)	86	0.094839	0.244	0.00201	0.0581
12q loss	23 (21%)	87	0.10878	0.27	0.00172	0.0581
13p loss	50 (45%)	60	0.35414	0.564	0.83203	0.901
13q loss	48 (44%)	62	0.58639	0.743	0.072589	0.222
14p loss	34 (31%)	76	0.93141	0.972	0.3201	0.529
14q loss	10 (9%)	100	0.077209	0.229	0.40733	0.602
15p loss	58 (53%)	52	0.094169	0.244	0.055799	0.189
15q loss	52 (47%)	58	0.086029	0.234	0.0097499	0.0839
16p loss	15 (14%)	95	0.0066799	0.0662	0.04143	0.161
16q loss	24 (22%)	86	0.078579	0.229	0.084049	0.234
17p loss	24 (22%)	86	0.51083	0.698	1	1
17q loss	18 (16%)	92	1	1	0.57489	0.733
18p loss	40 (36%)	70	0.02095	0.117	0.0053599	0.0662
18q loss	46 (42%)	64	0.03693	0.156	0.01202	0.0897
19p loss	45 (41%)	65	0.063789	0.207	0.079389	0.229
19q loss	35 (32%)	75	0.80967	0.884	0.73276	0.834
20p loss	26 (24%)	84	0.59749	0.744	0.20626	0.396
20q loss	21 (19%)	89	0.74433	0.842	0.64775	0.774
21p loss	42 (38%)	68	0.01741	0.11	0.0064999	0.0662
21q loss	38 (35%)	72	0.02013	0.117	0.00306	0.0581
22p loss	47 (43%)	63	0.0055299	0.0662	0.5214	0.704
22q loss	49 (45%)	61	0.0069699	0.0662	0.62746	0.759
xp loss	13 (12%)	97	0.86709	0.92	0.61191	0.745
xq loss	11 (10%)	99	0.60162	0.744	0.43531	0.631
yp loss	63 (57%)	47	0.0066799	0.0662	0.00219	0.0581
yq loss	64 (58%)	46	0.0497	0.175	0.00393	0.0622