Loading MAF file: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSig_2CV/CHOL-TP/22489357/CHOL-TP.final_analysis_set.maf
Sorting MAF data ...
Processing MAF data ...
Loading chr01: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr01.txt
100 mutations processed.
200 mutations processed.
300 mutations processed.
400 mutations processed.
500 mutations processed.
Loading chr02: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr02.txt
600 mutations processed.
700 mutations processed.
800 mutations processed.
900 mutations processed.
1000 mutations processed.
Loading chr03: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr03.txt
1100 mutations processed.
1200 mutations processed.
1300 mutations processed.
Loading chr04: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr04.txt
1400 mutations processed.
1500 mutations processed.
Loading chr05: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr05.txt
1600 mutations processed.
1700 mutations processed.
1800 mutations processed.
Loading chr06: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr06.txt
1900 mutations processed.
2000 mutations processed.
2100 mutations processed.
Loading chr07: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr07.txt
2200 mutations processed.
2300 mutations processed.
Loading chr08: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr08.txt
2400 mutations processed.
2500 mutations processed.
Loading chr09: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr09.txt
2600 mutations processed.
2700 mutations processed.
Loading chr10: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr10.txt
2800 mutations processed.
2900 mutations processed.
3000 mutations processed.
Loading chr11: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr11.txt
3100 mutations processed.
3200 mutations processed.
3300 mutations processed.
Loading chr12: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr12.txt
3400 mutations processed.
3500 mutations processed.
3600 mutations processed.
Loading chr13: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr13.txt
3700 mutations processed.
Loading chr14: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr14.txt
3800 mutations processed.
3900 mutations processed.
Loading chr15: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr15.txt
4000 mutations processed.
4100 mutations processed.
Loading chr16: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr16.txt
4200 mutations processed.
Loading chr17: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr17.txt
4300 mutations processed.
4400 mutations processed.
4500 mutations processed.
Loading chr18: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr18.txt
4600 mutations processed.
Loading chr19: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr19.txt
4700 mutations processed.
4800 mutations processed.
4900 mutations processed.
5000 mutations processed.
Loading chr20: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr20.txt
5100 mutations processed.
Loading chr21: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr21.txt
5200 mutations processed.
Loading chr22: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr22.txt
5300 mutations processed.
5400 mutations processed.
5500 mutations processed.
5502 mutations processed.
