[1] "ofn"         "-oTKIPAN-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIPAN-TP/22570984/KIPAN-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIPAN-TP/22815575/transformed.cor.cli.txt"

nPatients in clinical file=894, in cluster file=824, common to both=784
[1] "Reduce the number of clustering variables from 71 to 70."
[1]  70 784
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            38            746 
  TP53 MUTATED TP53 WILD-TYPE 
            38            746 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            28            756 
  PTEN MUTATED PTEN WILD-TYPE 
            28            756 
[1] "SETD2 MUTATION ANALYSIS"
[1] 3
  SETD2 MUTATED SETD2 WILD-TYPE 
             61             723 
  SETD2 MUTATED SETD2 WILD-TYPE 
             61             723 
[1] "PBRM1 MUTATION ANALYSIS"
[1] 3
  PBRM1 MUTATED PBRM1 WILD-TYPE 
            143             641 
  PBRM1 MUTATED PBRM1 WILD-TYPE 
            143             641 
[1] "NEFH MUTATION ANALYSIS"
[1] 3
  NEFH MUTATED NEFH WILD-TYPE 
            12            772 
  NEFH MUTATED NEFH WILD-TYPE 
            12            772 
[1] "VHL MUTATION ANALYSIS"
[1] 3
  VHL MUTATED VHL WILD-TYPE 
          196           588 
  VHL MUTATED VHL WILD-TYPE 
          196           588 
[1] "NF2 MUTATION ANALYSIS"
[1] 3
  NF2 MUTATED NF2 WILD-TYPE 
           16           768 
  NF2 MUTATED NF2 WILD-TYPE 
           16           768 
[1] "MET MUTATION ANALYSIS"
[1] 3
  MET MUTATED MET WILD-TYPE 
           25           759 
  MET MUTATED MET WILD-TYPE 
           25           759 
[1] "KDM5C MUTATION ANALYSIS"
[1] 3
  KDM5C MUTATED KDM5C WILD-TYPE 
             27             757 
  KDM5C MUTATED KDM5C WILD-TYPE 
             27             757 
[1] "MTOR MUTATION ANALYSIS"
[1] 3
  MTOR MUTATED MTOR WILD-TYPE 
            34            750 
  MTOR MUTATED MTOR WILD-TYPE 
            34            750 
[1] "ZNF814 MUTATION ANALYSIS"
[1] 3
  ZNF814 MUTATED ZNF814 WILD-TYPE 
              14              770 
  ZNF814 MUTATED ZNF814 WILD-TYPE 
              14              770 
[1] "AR MUTATION ANALYSIS"
[1] 3
  AR MUTATED AR WILD-TYPE 
          15          769 
  AR MUTATED AR WILD-TYPE 
          15          769 
[1] "STAG2 MUTATION ANALYSIS"
[1] 3
  STAG2 MUTATED STAG2 WILD-TYPE 
             15             769 
  STAG2 MUTATED STAG2 WILD-TYPE 
             15             769 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
             6            778 
  KRAS MUTATED KRAS WILD-TYPE 
             6            778 
[1] "SLC6A14 MUTATION ANALYSIS"
[1] 3
  SLC6A14 MUTATED SLC6A14 WILD-TYPE 
                4               780 
  SLC6A14 MUTATED SLC6A14 WILD-TYPE 
                4               780 
[1] "SMARCA4 MUTATION ANALYSIS"
[1] 3
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               20               764 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               20               764 
[1] "NFE2L2 MUTATION ANALYSIS"
[1] 3
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              12              772 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              12              772 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              18              766 
  ARID1A MUTATED ARID1A WILD-TYPE 
              18              766 
[1] "BCLAF1 MUTATION ANALYSIS"
[1] 3
  BCLAF1 MUTATED BCLAF1 WILD-TYPE 
              10              774 
  BCLAF1 MUTATED BCLAF1 WILD-TYPE 
              10              774 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           20           764 
  ATM MUTATED ATM WILD-TYPE 
           20           764 
[1] "CACNA1C MUTATION ANALYSIS"
[1] 3
  CACNA1C MUTATED CACNA1C WILD-TYPE 
               15               769 
  CACNA1C MUTATED CACNA1C WILD-TYPE 
               15               769 
[1] "PARD6B MUTATION ANALYSIS"
[1] 3
  PARD6B MUTATED PARD6B WILD-TYPE 
               8              776 
  PARD6B MUTATED PARD6B WILD-TYPE 
               8              776 
[1] "CUL3 MUTATION ANALYSIS"
[1] 3
  CUL3 MUTATED CUL3 WILD-TYPE 
            16            768 
  CUL3 MUTATED CUL3 WILD-TYPE 
            16            768 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              15              769 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              15              769 
[1] "SMARCB1 MUTATION ANALYSIS"
[1] 3
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
                9               775 
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
                9               775 
[1] "PCF11 MUTATION ANALYSIS"
[1] 3
  PCF11 MUTATED PCF11 WILD-TYPE 
             13             771 
  PCF11 MUTATED PCF11 WILD-TYPE 
             13             771 
[1] "WASL MUTATION ANALYSIS"
[1] 3
  WASL MUTATED WASL WILD-TYPE 
             8            776 
  WASL MUTATED WASL WILD-TYPE 
             8            776 
[1] "DNMT3A MUTATION ANALYSIS"
[1] 3
  DNMT3A MUTATED DNMT3A WILD-TYPE 
              11              773 
  DNMT3A MUTATED DNMT3A WILD-TYPE 
              11              773 
[1] "KIAA0922 MUTATION ANALYSIS"
[1] 3
  KIAA0922 MUTATED KIAA0922 WILD-TYPE 
                 7                777 
  KIAA0922 MUTATED KIAA0922 WILD-TYPE 
                 7                777 
[1] "GPR50 MUTATION ANALYSIS"
[1] 3
  GPR50 MUTATED GPR50 WILD-TYPE 
              5             779 
  GPR50 MUTATED GPR50 WILD-TYPE 
              5             779 
[1] "ACSF2 MUTATION ANALYSIS"
[1] 3
  ACSF2 MUTATED ACSF2 WILD-TYPE 
             11             773 
  ACSF2 MUTATED ACSF2 WILD-TYPE 
             11             773 
[1] "WDR52 MUTATION ANALYSIS"
[1] 3
  WDR52 MUTATED WDR52 WILD-TYPE 
              9             775 
  WDR52 MUTATED WDR52 WILD-TYPE 
              9             775 
[1] "ALMS1 MUTATION ANALYSIS"
[1] 3
  ALMS1 MUTATED ALMS1 WILD-TYPE 
             14             770 
  ALMS1 MUTATED ALMS1 WILD-TYPE 
             14             770 
[1] "TXNIP MUTATION ANALYSIS"
[1] 3
  TXNIP MUTATED TXNIP WILD-TYPE 
              8             776 
  TXNIP MUTATED TXNIP WILD-TYPE 
              8             776 
[1] "NUDT11 MUTATION ANALYSIS"
[1] 3
  NUDT11 MUTATED NUDT11 WILD-TYPE 
               5              779 
  NUDT11 MUTATED NUDT11 WILD-TYPE 
               5              779 
[1] "PCK1 MUTATION ANALYSIS"
[1] 3
  PCK1 MUTATED PCK1 WILD-TYPE 
             9            775 
  PCK1 MUTATED PCK1 WILD-TYPE 
             9            775 
[1] "RAI1 MUTATION ANALYSIS"
[1] 3
  RAI1 MUTATED RAI1 WILD-TYPE 
            11            773 
  RAI1 MUTATED RAI1 WILD-TYPE 
            11            773 
[1] "PAM MUTATION ANALYSIS"
[1] 3
  PAM MUTATED PAM WILD-TYPE 
            4           780 
  PAM MUTATED PAM WILD-TYPE 
            4           780 
[1] "KDM6A MUTATION ANALYSIS"
[1] 3
  KDM6A MUTATED KDM6A WILD-TYPE 
             13             771 
  KDM6A MUTATED KDM6A WILD-TYPE 
             13             771 
[1] "GLS MUTATION ANALYSIS"
[1] 3
  GLS MUTATED GLS WILD-TYPE 
            9           775 
  GLS MUTATED GLS WILD-TYPE 
            9           775 
[1] "EPS15L1 MUTATION ANALYSIS"
[1] 3
  EPS15L1 MUTATED EPS15L1 WILD-TYPE 
               10               774 
  EPS15L1 MUTATED EPS15L1 WILD-TYPE 
               10               774 
[1] "NOM1 MUTATION ANALYSIS"
[1] 3
  NOM1 MUTATED NOM1 WILD-TYPE 
             6            778 
  NOM1 MUTATED NOM1 WILD-TYPE 
             6            778 
[1] "CDK12 MUTATION ANALYSIS"
[1] 3
  CDK12 MUTATED CDK12 WILD-TYPE 
              8             776 
  CDK12 MUTATED CDK12 WILD-TYPE 
              8             776 
[1] "ARHGAP35 MUTATION ANALYSIS"
[1] 3
  ARHGAP35 MUTATED ARHGAP35 WILD-TYPE 
                 7                777 
  ARHGAP35 MUTATED ARHGAP35 WILD-TYPE 
                 7                777 
[1] "RIMBP3 MUTATION ANALYSIS"
[1] 3
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               5              779 
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               5              779 
[1] "FAT1 MUTATION ANALYSIS"
[1] 3
  FAT1 MUTATED FAT1 WILD-TYPE 
            20            764 
  FAT1 MUTATED FAT1 WILD-TYPE 
            20            764 
[1] "FAM178A MUTATION ANALYSIS"
[1] 3
  FAM178A MUTATED FAM178A WILD-TYPE 
                8               776 
  FAM178A MUTATED FAM178A WILD-TYPE 
                8               776 
[1] "TCEB1 MUTATION ANALYSIS"
[1] 3
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              4             780 
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              4             780 
[1] "PODXL MUTATION ANALYSIS"
[1] 3
  PODXL MUTATED PODXL WILD-TYPE 
              6             778 
  PODXL MUTATED PODXL WILD-TYPE 
              6             778 
[1] "DNAJA3 MUTATION ANALYSIS"
[1] 3
  DNAJA3 MUTATED DNAJA3 WILD-TYPE 
               3              781 
  DNAJA3 MUTATED DNAJA3 WILD-TYPE 
               3              781 
[1] "NASP MUTATION ANALYSIS"
[1] 3
  NASP MUTATED NASP WILD-TYPE 
             5            779 
  NASP MUTATED NASP WILD-TYPE 
             5            779 
[1] "SLC23A1 MUTATION ANALYSIS"
[1] 3
  SLC23A1 MUTATED SLC23A1 WILD-TYPE 
                6               778 
  SLC23A1 MUTATED SLC23A1 WILD-TYPE 
                6               778 
[1] "RILPL1 MUTATION ANALYSIS"
[1] 3
  RILPL1 MUTATED RILPL1 WILD-TYPE 
               5              779 
  RILPL1 MUTATED RILPL1 WILD-TYPE 
               5              779 
[1] "NIPBL MUTATION ANALYSIS"
[1] 3
  NIPBL MUTATED NIPBL WILD-TYPE 
             15             769 
  NIPBL MUTATED NIPBL WILD-TYPE 
             15             769 
[1] "FAM47A MUTATION ANALYSIS"
[1] 3
  FAM47A MUTATED FAM47A WILD-TYPE 
               6              778 
  FAM47A MUTATED FAM47A WILD-TYPE 
               6              778 
[1] "RHEB MUTATION ANALYSIS"
[1] 3
  RHEB MUTATED RHEB WILD-TYPE 
             3            781 
  RHEB MUTATED RHEB WILD-TYPE 
             3            781 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
             5            779 
  BRAF MUTATED BRAF WILD-TYPE 
             5            779 
[1] "MLL3 MUTATION ANALYSIS"
[1] 3
  MLL3 MUTATED MLL3 WILD-TYPE 
            42            742 
  MLL3 MUTATED MLL3 WILD-TYPE 
            42            742 
[1] "ANK3 MUTATION ANALYSIS"
[1] 3
  ANK3 MUTATED ANK3 WILD-TYPE 
            22            762 
  ANK3 MUTATED ANK3 WILD-TYPE 
            22            762 
[1] "EMG1 MUTATION ANALYSIS"
[1] 3
  EMG1 MUTATED EMG1 WILD-TYPE 
             4            780 
  EMG1 MUTATED EMG1 WILD-TYPE 
             4            780 
[1] "LHX1 MUTATION ANALYSIS"
[1] 3
  LHX1 MUTATED LHX1 WILD-TYPE 
             4            780 
  LHX1 MUTATED LHX1 WILD-TYPE 
             4            780 
[1] "SCARB2 MUTATION ANALYSIS"
[1] 3
  SCARB2 MUTATED SCARB2 WILD-TYPE 
               4              780 
  SCARB2 MUTATED SCARB2 WILD-TYPE 
               4              780 
[1] "C1ORF25 MUTATION ANALYSIS"
[1] 3
  C1ORF25 MUTATED C1ORF25 WILD-TYPE 
                6               778 
  C1ORF25 MUTATED C1ORF25 WILD-TYPE 
                6               778 
[1] "KDELR3 MUTATION ANALYSIS"
[1] 3
  KDELR3 MUTATED KDELR3 WILD-TYPE 
               7              777 
  KDELR3 MUTATED KDELR3 WILD-TYPE 
               7              777 
[1] "TTLL6 MUTATION ANALYSIS"
[1] 3
  TTLL6 MUTATED TTLL6 WILD-TYPE 
              4             780 
  TTLL6 MUTATED TTLL6 WILD-TYPE 
              4             780 
[1] "STXBP3 MUTATION ANALYSIS"
[1] 3
  STXBP3 MUTATED STXBP3 WILD-TYPE 
               5              779 
  STXBP3 MUTATED STXBP3 WILD-TYPE 
               5              779 
[1] "FAM20C MUTATION ANALYSIS"
[1] 3
  FAM20C MUTATED FAM20C WILD-TYPE 
               5              779 
  FAM20C MUTATED FAM20C WILD-TYPE 
               5              779 
[1] "CCBL2 MUTATION ANALYSIS"
[1] 3
  CCBL2 MUTATED CCBL2 WILD-TYPE 
              3             781 
  CCBL2 MUTATED CCBL2 WILD-TYPE 
              3             781 
[1] "B3GNT6 MUTATION ANALYSIS"
[1] 3
  B3GNT6 MUTATED B3GNT6 WILD-TYPE 
               3              781 
  B3GNT6 MUTATED B3GNT6 WILD-TYPE 
               3              781 
[1] "HNF1B MUTATION ANALYSIS"
[1] 3
  HNF1B MUTATED HNF1B WILD-TYPE 
              4             780 
  HNF1B MUTATED HNF1B WILD-TYPE 
              4             780 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 784 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 784 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=9, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE

Clustering(1) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        0      0      2      0
  TP53 WILD-TYPE     17     16      8     15
D1V1, multiclass
[1] "Remove cluster labels:" "TP53 MUTATED"          
clus
  TP53 MUTATED TP53 WILD-TYPE 
             2             56 
    TCGA-A3-3311     TCGA-A3-3313     TCGA-A3-3317     TCGA-A3-3322 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3374     TCGA-AK-3427 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455     TCGA-AK-3456 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3468 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777     TCGA-B2-3923 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B3-3926     TCGA-B3-4103     TCGA-B8-4143     TCGA-B8-4148 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619     TCGA-B8-4620 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115     TCGA-B9-4116 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B9-4117     TCGA-B9-4617     TCGA-BP-4161     TCGA-BP-4162 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED        0      0      0      0      2
  TP53 WILD-TYPE      7     16     16     10      7
D1V2, multiclass
[1] "Remove cluster labels:" "TP53 MUTATED"          
clus
  TP53 MUTATED TP53 WILD-TYPE 
             2             56 
    TCGA-A3-3311     TCGA-A3-3313     TCGA-A3-3317     TCGA-A3-3322 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3374     TCGA-AK-3427 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455     TCGA-AK-3456 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3468 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777     TCGA-B2-3923 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B3-3926     TCGA-B3-4103     TCGA-B8-4143     TCGA-B8-4148 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619     TCGA-B8-4620 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115     TCGA-B9-4116 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-B9-4117     TCGA-B9-4617     TCGA-BP-4161     TCGA-BP-4162 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       27      3      8
  TP53 WILD-TYPE    286    165    290
D1V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           27            286
  CLUS_2            3            165
  CLUS_3            8            290
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       25      3      3      3      2
  TP53 WILD-TYPE     70    108    139     60    183
D1V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           25             70
  CLUS_2            3            108
  CLUS_3            3            139
  CLUS_4            3             60
  CLUS_5            2            183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       10      7      8      7
  TP53 WILD-TYPE    153    154    162    168
D1V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           10            153
  CLUS_2            7            154
  CLUS_3            8            162
  CLUS_4            7            168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TP53 MUTATED       10      4     11      4      1      0      2
  TP53 WILD-TYPE    168     58     94    125     51     61     80
D1V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            4             58
  CLUS_3           11             94
  CLUS_4            4            125
  CLUS_5            1             51
  CLUS_6            0             61
  CLUS_7            2             80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       26      5      2      5
  TP53 WILD-TYPE     81    174    231    257
D1V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           26             81
  CLUS_2            5            174
  CLUS_3            2            231
  CLUS_4            5            257
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TP53 MUTATED       24      5      1      3      1      1      1      1      1
  TP53 WILD-TYPE     60     45    121     74    106     31     89     51    166
D1V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           24             60
  CLUS_2            5             45
  CLUS_3            1            121
  CLUS_4            3             74
  CLUS_5            1            106
  CLUS_6            1             31
  CLUS_7            1             89
  CLUS_8            1             51
  CLUS_9            1            166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       30      3      5
  TP53 WILD-TYPE    299    161    277
D1V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           30            299
  CLUS_2            3            161
  CLUS_3            5            277
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       24      9      2      3
  TP53 WILD-TYPE     49    291    196    201
D1V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           24             49
  CLUS_2            9            291
  CLUS_3            2            196
  CLUS_4            3            201
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        2     19      3      2
  TP53 WILD-TYPE    153     47     53     94
D1V11, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            2            153
  CLUS_2           19             47
  CLUS_3            3             53
  CLUS_4            2             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TP53 MUTATED        0      3      1      0      2      2     18
  TP53 WILD-TYPE     90     70     49     19     35     56     28
D1V12, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            3             70
  CLUS_3            1             49
  CLUS_4            0             19
  CLUS_5            2             35
  CLUS_6            2             56
  CLUS_7           18             28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        0      1      1      0
  PTEN WILD-TYPE     17     15      9     15
D2V1, multiclass
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             2             56 
    TCGA-A3-3311     TCGA-A3-3313     TCGA-A3-3317     TCGA-A3-3322 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3374     TCGA-AK-3440 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455     TCGA-AK-3456 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3468 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777     TCGA-B2-3923 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104     TCGA-B8-4143 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-B8-4148     TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617     TCGA-BP-4162 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        0      1      0      0      1
  PTEN WILD-TYPE      7     15     16     10      8
D2V2, multiclass
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             2             56 
    TCGA-A3-3311     TCGA-A3-3313     TCGA-A3-3317     TCGA-A3-3322 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3374     TCGA-AK-3440 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455     TCGA-AK-3456 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3468 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777     TCGA-B2-3923 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104     TCGA-B8-4143 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-B8-4148     TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617     TCGA-BP-4162 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       13      2     11
  PTEN WILD-TYPE    300    166    287
D2V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           13            300
  CLUS_2            2            166
  CLUS_3           11            287
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        6      6      2      0      8
  PTEN WILD-TYPE     89    105    140     63    177
D2V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6             89
  CLUS_2            6            105
  CLUS_3            2            140
  CLUS_4            0             63
  CLUS_5            8            177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        6      8      5      8
  PTEN WILD-TYPE    157    153    165    167
D2V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6            157
  CLUS_2            8            153
  CLUS_3            5            165
  CLUS_4            8            167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTEN MUTATED        7      2      5      9      1      1      2
  PTEN WILD-TYPE    171     60    100    120     51     60     80
D2V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            7            171
  CLUS_2            2             60
  CLUS_3            5            100
  CLUS_4            9            120
  CLUS_5            1             51
  CLUS_6            1             60
  CLUS_7            2             80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        7     10      3      7
  PTEN WILD-TYPE    100    169    230    255
D2V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            7            100
  CLUS_2           10            169
  CLUS_3            3            230
  CLUS_4            7            255
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PTEN MUTATED        7      0      1      1      8      0      1      3      6
  PTEN WILD-TYPE     77     50    121     76     99     32     89     49    161
D2V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            7             77
  CLUS_2            0             50
  CLUS_3            1            121
  CLUS_4            1             76
  CLUS_5            8             99
  CLUS_6            0             32
  CLUS_7            1             89
  CLUS_8            3             49
  CLUS_9            6            161
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       14      4     10
  PTEN WILD-TYPE    315    160    272
D2V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           14            315
  CLUS_2            4            160
  CLUS_3           10            272
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        7     11      2      8
  PTEN WILD-TYPE     66    289    196    196
D2V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            7             66
  CLUS_2           11            289
  CLUS_3            2            196
  CLUS_4            8            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        6      5      0      1
  PTEN WILD-TYPE    149     61     56     95
D2V11, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6            149
  CLUS_2            5             61
  CLUS_3            0             56
  CLUS_4            1             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTEN MUTATED        4      0      2      0      0      1      5
  PTEN WILD-TYPE     86     73     48     19     37     57     41
D2V12, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4             86
  CLUS_2            0             73
  CLUS_3            2             48
  CLUS_4            0             19
  CLUS_5            0             37
  CLUS_6            1             57
  CLUS_7            5             41
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = SETD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        1      2      0      0
  SETD2 WILD-TYPE     16     14     10     15
D3V1, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             2              14
  CLUS_3             0              10
  CLUS_4             0              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD2 MUTATED        0      2      0      1      0
  SETD2 WILD-TYPE      7     14     16      9      9
D3V2, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2              14
  CLUS_3             0              16
  CLUS_4             1               9
  CLUS_5             0               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       13     15     33
  SETD2 WILD-TYPE    300    153    265
D3V3, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            13             300
  CLUS_2            15             153
  CLUS_3            33             265
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD2 MUTATED        3      4     13     25      3
  SETD2 WILD-TYPE     92    107    129     38    182
D3V4, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             4             107
  CLUS_3            13             129
  CLUS_4            25              38
  CLUS_5             3             182
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED       13     13     10     19
  SETD2 WILD-TYPE    150    148    160    156
D3V5, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            13             150
  CLUS_2            13             148
  CLUS_3            10             160
  CLUS_4            19             156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SETD2 MUTATED       19      6     10      6      3      3      8
  SETD2 WILD-TYPE    159     56     95    123     49     58     74
D3V6, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            19             159
  CLUS_2             6              56
  CLUS_3            10              95
  CLUS_4             6             123
  CLUS_5             3              49
  CLUS_6             3              58
  CLUS_7             8              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        3     16     24     18
  SETD2 WILD-TYPE    104    163    209    244
D3V7, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3             104
  CLUS_2            16             163
  CLUS_3            24             209
  CLUS_4            18             244
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SETD2 MUTATED        2      3     20     14     12      0      5      3
  SETD2 WILD-TYPE     82     47    102     63     95     32     85     49
                 vv
clus              CLUS_9
  SETD2 MUTATED        2
  SETD2 WILD-TYPE    165
D3V8, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             3              47
  CLUS_3            20             102
  CLUS_4            14              63
  CLUS_5            12              95
  CLUS_6             0              32
  CLUS_7             5              85
  CLUS_8             3              49
  CLUS_9             2             165
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       19     11     29
  SETD2 WILD-TYPE    310    153    253
D3V9, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            19             310
  CLUS_2            11             153
  CLUS_3            29             253
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        2     31     19      7
  SETD2 WILD-TYPE     71    269    179    197
D3V10, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2              71
  CLUS_2            31             269
  CLUS_3            19             179
  CLUS_4             7             197
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        9      1      4     13
  SETD2 WILD-TYPE    146     65     52     83
D3V11, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             9             146
  CLUS_2             1              65
  CLUS_3             4              52
  CLUS_4            13              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SETD2 MUTATED        5      7      1      0      4      9      1
  SETD2 WILD-TYPE     85     66     49     19     33     49     45
D3V12, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             5              85
  CLUS_2             7              66
  CLUS_3             1              49
  CLUS_4             0              19
  CLUS_5             4              33
  CLUS_6             9              49
  CLUS_7             1              45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = PBRM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBRM1 MUTATED        9      3      1      0
  PBRM1 WILD-TYPE      8     13      9     15
D4V1, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             9               8
  CLUS_2             3              13
  CLUS_3             1               9
  CLUS_4             0              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PBRM1 MUTATED        5      3      0      4      1
  PBRM1 WILD-TYPE      2     13     16      6      8
D4V2, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             5               2
  CLUS_2             3              13
  CLUS_3             0              16
  CLUS_4             4               6
  CLUS_5             1               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       10     46     87
  PBRM1 WILD-TYPE    303    122    211
D4V3, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            10             303
  CLUS_2            46             122
  CLUS_3            87             211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PBRM1 MUTATED        1     12     60     27      3
  PBRM1 WILD-TYPE     94     99     82     36    182
D4V4, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2            12              99
  CLUS_3            60              82
  CLUS_4            27              36
  CLUS_5             3             182
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBRM1 MUTATED       23     37     28     45
  PBRM1 WILD-TYPE    140    124    142    130
D4V5, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            23             140
  CLUS_2            37             124
  CLUS_3            28             142
  CLUS_4            45             130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PBRM1 MUTATED       44      6     13     35     12     13     10
  PBRM1 WILD-TYPE    134     56     92     94     40     48     72
D4V6, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            44             134
  CLUS_2             6              56
  CLUS_3            13              92
  CLUS_4            35              94
  CLUS_5            12              40
  CLUS_6            13              48
  CLUS_7            10              72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBRM1 MUTATED        3     40     87     12
  PBRM1 WILD-TYPE    104    139    146    250
D4V7, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             3             104
  CLUS_2            40             139
  CLUS_3            87             146
  CLUS_4            12             250
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PBRM1 MUTATED        2      0     57      9     26      1     31     13
  PBRM1 WILD-TYPE     82     50     65     68     81     31     59     39
                 vv
clus              CLUS_9
  PBRM1 MUTATED        3
  PBRM1 WILD-TYPE    164
D4V8, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             0              50
  CLUS_3            57              65
  CLUS_4             9              68
  CLUS_5            26              81
  CLUS_6             1              31
  CLUS_7            31              59
  CLUS_8            13              39
  CLUS_9             3             164
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       12     26    101
  PBRM1 WILD-TYPE    317    138    181
D4V9, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            12             317
  CLUS_2            26             138
  CLUS_3           101             181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBRM1 MUTATED        1     52     79      7
  PBRM1 WILD-TYPE     72    248    119    197
D4V10, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             1              72
  CLUS_2            52             248
  CLUS_3            79             119
  CLUS_4             7             197
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBRM1 MUTATED        8      1      1     31
  PBRM1 WILD-TYPE    147     65     55     65
D4V11, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             8             147
  CLUS_2             1              65
  CLUS_3             1              55
  CLUS_4            31              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PBRM1 MUTATED        5      4      0      0      4     27      1
  PBRM1 WILD-TYPE     85     69     50     19     33     31     45
D4V12, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             5              85
  CLUS_2             4              69
  CLUS_3             0              50
  CLUS_4             0              19
  CLUS_5             4              33
  CLUS_6            27              31
  CLUS_7             1              45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = NEFH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        0      0      0      0
  NEFH WILD-TYPE     17     16     10     15
D5V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEFH MUTATED        0      0      0      0      0
  NEFH WILD-TYPE      7     16     16     10      9
D5V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        7      1      4
  NEFH WILD-TYPE    306    167    294
D5V3, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            7            306
  CLUS_2            1            167
  CLUS_3            4            294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEFH MUTATED        1      1      2      2      5
  NEFH WILD-TYPE     94    110    140     61    180
D5V4, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1            110
  CLUS_3            2            140
  CLUS_4            2             61
  CLUS_5            5            180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        2      2      0      6
  NEFH WILD-TYPE    161    159    170    169
D5V5, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            2            161
  CLUS_2            2            159
  CLUS_3            0            170
  CLUS_4            6            169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NEFH MUTATED        4      0      1      1      1      1      2
  NEFH WILD-TYPE    174     62    104    128     51     60     80
D5V6, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            4            174
  CLUS_2            0             62
  CLUS_3            1            104
  CLUS_4            1            128
  CLUS_5            1             51
  CLUS_6            1             60
  CLUS_7            2             80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        2      1      3      6
  NEFH WILD-TYPE    105    178    230    256
D5V7, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            2            105
  CLUS_2            1            178
  CLUS_3            3            230
  CLUS_4            6            256
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NEFH MUTATED        0      0      3      2      1      1      0      0      5
  NEFH WILD-TYPE     84     50    119     75    106     31     90     52    162
D5V8, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             50
  CLUS_3            3            119
  CLUS_4            2             75
  CLUS_5            1            106
  CLUS_6            1             31
  CLUS_7            0             90
  CLUS_8            0             52
  CLUS_9            5            162
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        6      2      4
  NEFH WILD-TYPE    323    162    278
D5V9, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            6            323
  CLUS_2            2            162
  CLUS_3            4            278
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        0      3      3      6
  NEFH WILD-TYPE     73    297    195    198
D5V10, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            0             73
  CLUS_2            3            297
  CLUS_3            3            195
  CLUS_4            6            198
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        4      0      0      3
  NEFH WILD-TYPE    151     66     56     93
D5V11, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            4            151
  CLUS_2            0             66
  CLUS_3            0             56
  CLUS_4            3             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NEFH MUTATED        2      0      2      1      0      2      0
  NEFH WILD-TYPE     88     73     48     18     37     56     46
D5V12, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            2             88
  CLUS_2            0             73
  CLUS_3            2             48
  CLUS_4            1             18
  CLUS_5            0             37
  CLUS_6            2             56
  CLUS_7            0             46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = VHL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VHL MUTATED       10      5      1      0
  VHL WILD-TYPE      7     11      9     15
D6V1, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          10             7
  CLUS_2           5            11
  CLUS_3           1             9
  CLUS_4           0            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VHL MUTATED        4      5      0      6      1
  VHL WILD-TYPE      3     11     16      4      8
D6V2, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           4             3
  CLUS_2           5            11
  CLUS_3           0            16
  CLUS_4           6             4
  CLUS_5           1             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED        2     81    113
  VHL WILD-TYPE    311     87    185
D6V3, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           2           311
  CLUS_2          81            87
  CLUS_3         113           185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VHL MUTATED        1     30     73     19      0
  VHL WILD-TYPE     94     81     69     44    185
D6V4, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           1            94
  CLUS_2          30            81
  CLUS_3          73            69
  CLUS_4          19            44
  CLUS_5           0           185
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VHL MUTATED       50     47     30     55
  VHL WILD-TYPE    113    114    140    120
D6V5, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          50           113
  CLUS_2          47           114
  CLUS_3          30           140
  CLUS_4          55           120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VHL MUTATED       49      0     23     49     17     20     24
  VHL WILD-TYPE    129     62     82     80     35     41     58
D6V6, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1          49           129
  CLUS_2           0            62
  CLUS_3          23            82
  CLUS_4          49            80
  CLUS_5          17            35
  CLUS_6          20            41
  CLUS_7          24            58
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VHL MUTATED        5     66    121      4
  VHL WILD-TYPE    102    113    112    258
D6V7, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           5           102
  CLUS_2          66           113
  CLUS_3         121           112
  CLUS_4           4           258
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  VHL MUTATED        2      1     59      1     49     13     47     24      0
  VHL WILD-TYPE     82     49     63     76     58     19     43     28    167
D6V8, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           2            82
  CLUS_2           1            49
  CLUS_3          59            63
  CLUS_4           1            76
  CLUS_5          49            58
  CLUS_6          13            19
  CLUS_7          47            43
  CLUS_8          24            28
  CLUS_9           0           167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VHL MUTATED        3     59    130
  VHL WILD-TYPE    326    105    152
D6V9, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           3           326
  CLUS_2          59           105
  CLUS_3         130           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VHL MUTATED        1     84    107      0
  VHL WILD-TYPE     72    216     91    204
D6V10, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           1            72
  CLUS_2          84           216
  CLUS_3         107            91
  CLUS_4           0           204
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VHL MUTATED        1      1      2     48
  VHL WILD-TYPE    154     65     54     48
D6V11, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           1           154
  CLUS_2           1            65
  CLUS_3           2            54
  CLUS_4          48            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VHL MUTATED        0      5      0      0     18     28      1
  VHL WILD-TYPE     90     68     50     19     19     30     45
D6V12, multiclass
        clus
vv       VHL MUTATED VHL WILD-TYPE
  CLUS_1           0            90
  CLUS_2           5            68
  CLUS_3           0            50
  CLUS_4           0            19
  CLUS_5          18            19
  CLUS_6          28            30
  CLUS_7           1            45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = NF2 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED        0      1      0      1
  NF2 WILD-TYPE     17     15     10     14
D7V1, multiclass
[1] "Remove cluster labels:" "NF2 MUTATED"           
clus
  NF2 MUTATED NF2 WILD-TYPE 
            2            56 
   TCGA-A3-3311    TCGA-A3-3313    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A3-3374    TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-AK-3455    TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-AL-3468    TCGA-AL-3472    TCGA-AL-3473    TCGA-AS-3777    TCGA-B2-3923 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B2-3924    TCGA-B2-4098    TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B3-4103    TCGA-B3-4104    TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B8-4154    TCGA-B8-4619    TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B9-4115    TCGA-B9-4116    TCGA-B9-4617    TCGA-BP-4161    TCGA-BP-4162 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BP-4163    TCGA-BP-4164    TCGA-BP-4167    TCGA-CJ-4634    TCGA-CJ-4636 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-CJ-4637    TCGA-CJ-4639    TCGA-CJ-4640    TCGA-CJ-4641    TCGA-CJ-4643 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-CJ-4644 
"NF2 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF2 MUTATED        0      1      1      0      0
  NF2 WILD-TYPE      7     15     15     10      9
D7V2, multiclass
[1] "Remove cluster labels:" "NF2 MUTATED"           
clus
  NF2 MUTATED NF2 WILD-TYPE 
            2            56 
   TCGA-A3-3311    TCGA-A3-3313    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-A3-3374    TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-AK-3455    TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-AL-3468    TCGA-AL-3472    TCGA-AL-3473    TCGA-AS-3777    TCGA-B2-3923 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B2-3924    TCGA-B2-4098    TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B3-4103    TCGA-B3-4104    TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B8-4154    TCGA-B8-4619    TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-B9-4115    TCGA-B9-4116    TCGA-B9-4617    TCGA-BP-4161    TCGA-BP-4162 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-BP-4163    TCGA-BP-4164    TCGA-BP-4167    TCGA-CJ-4634    TCGA-CJ-4636 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-CJ-4637    TCGA-CJ-4639    TCGA-CJ-4640    TCGA-CJ-4641    TCGA-CJ-4643 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-CJ-4644 
"NF2 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF2 MUTATED        9      1      6
  NF2 WILD-TYPE    304    167    292
D7V3, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           9           304
  CLUS_2           1           167
  CLUS_3           6           292
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF2 MUTATED        2      3      1      2      4
  NF2 WILD-TYPE     93    108    141     61    181
D7V4, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           2            93
  CLUS_2           3           108
  CLUS_3           1           141
  CLUS_4           2            61
  CLUS_5           4           181
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED        2      4      2      6
  NF2 WILD-TYPE    161    157    168    169
D7V5, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           2           161
  CLUS_2           4           157
  CLUS_3           2           168
  CLUS_4           6           169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NF2 MUTATED        3      1      4      0      3      1      2
  NF2 WILD-TYPE    175     61    101    129     49     60     80
D7V6, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           3           175
  CLUS_2           1            61
  CLUS_3           4           101
  CLUS_4           0           129
  CLUS_5           3            49
  CLUS_6           1            60
  CLUS_7           2            80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED        1      3      1     11
  NF2 WILD-TYPE    106    176    232    251
D7V7, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           1           106
  CLUS_2           3           176
  CLUS_3           1           232
  CLUS_4          11           251
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NF2 MUTATED        0      6      1      1      2      1      0      0      5
  NF2 WILD-TYPE     84     44    121     76    105     31     90     52    162
D7V8, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           0            84
  CLUS_2           6            44
  CLUS_3           1           121
  CLUS_4           1            76
  CLUS_5           2           105
  CLUS_6           1            31
  CLUS_7           0            90
  CLUS_8           0            52
  CLUS_9           5           162
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF2 MUTATED       10      3      3
  NF2 WILD-TYPE    319    161    279
D7V9, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1          10           319
  CLUS_2           3           161
  CLUS_3           3           279
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED        0      8      1      7
  NF2 WILD-TYPE     73    292    197    197
D7V10, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           0            73
  CLUS_2           8           292
  CLUS_3           1           197
  CLUS_4           7           197
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED        3      0      3      0
  NF2 WILD-TYPE    152     66     53     96
D7V11, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           3           152
  CLUS_2           0            66
  CLUS_3           3            53
  CLUS_4           0            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NF2 MUTATED        3      3      0      0      0      0      0
  NF2 WILD-TYPE     87     70     50     19     37     58     46
D7V12, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           3            87
  CLUS_2           3            70
  CLUS_3           0            50
  CLUS_4           0            19
  CLUS_5           0            37
  CLUS_6           0            58
  CLUS_7           0            46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = MET MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        0      0      0      1
  MET WILD-TYPE     17     16     10     14
D8V1, multiclass
[1] "Remove cluster labels:" "MET MUTATED"           
clus
  MET MUTATED MET WILD-TYPE 
            1            57 
   TCGA-A3-3311    TCGA-A3-3313    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-A3-3374    TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-AK-3455    TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-AL-3468    TCGA-AL-3473    TCGA-AS-3777    TCGA-B2-3923    TCGA-B2-3924 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B2-4098    TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926    TCGA-B3-4103 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B3-4104    TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151    TCGA-B8-4154 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B8-4619    TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114    TCGA-B9-4115 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B9-4116    TCGA-B9-4117    TCGA-B9-4617    TCGA-BP-4161    TCGA-BP-4162 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-BP-4163    TCGA-BP-4164    TCGA-BP-4167    TCGA-CJ-4634    TCGA-CJ-4636 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-CJ-4637    TCGA-CJ-4638    TCGA-CJ-4639    TCGA-CJ-4640    TCGA-CJ-4641 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-CJ-4643    TCGA-CJ-4644 
"MET WILD-TYPE" "MET WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MET MUTATED        0      0      1      0      0
  MET WILD-TYPE      7     16     15     10      9
D8V2, multiclass
[1] "Remove cluster labels:" "MET MUTATED"           
clus
  MET MUTATED MET WILD-TYPE 
            1            57 
   TCGA-A3-3311    TCGA-A3-3313    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-A3-3374    TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-AK-3455    TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-AL-3468    TCGA-AL-3473    TCGA-AS-3777    TCGA-B2-3923    TCGA-B2-3924 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B2-4098    TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926    TCGA-B3-4103 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B3-4104    TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151    TCGA-B8-4154 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B8-4619    TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114    TCGA-B9-4115 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B9-4116    TCGA-B9-4117    TCGA-B9-4617    TCGA-BP-4161    TCGA-BP-4162 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-BP-4163    TCGA-BP-4164    TCGA-BP-4167    TCGA-CJ-4634    TCGA-CJ-4636 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-CJ-4637    TCGA-CJ-4638    TCGA-CJ-4639    TCGA-CJ-4640    TCGA-CJ-4641 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-CJ-4643    TCGA-CJ-4644 
"MET WILD-TYPE" "MET WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED       20      1      3
  MET WILD-TYPE    293    167    295
D8V3, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1          20           293
  CLUS_2           1           167
  CLUS_3           3           295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MET MUTATED        1      3      1      1     18
  MET WILD-TYPE     94    108    141     62    167
D8V4, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           1            94
  CLUS_2           3           108
  CLUS_3           1           141
  CLUS_4           1            62
  CLUS_5          18           167
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        7      9      2      4
  MET WILD-TYPE    156    152    168    171
D8V5, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           7           156
  CLUS_2           9           152
  CLUS_3           2           168
  CLUS_4           4           171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MET MUTATED        8      0      5      5      1      0      3
  MET WILD-TYPE    170     62    100    124     51     61     79
D8V6, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           8           170
  CLUS_2           0            62
  CLUS_3           5           100
  CLUS_4           5           124
  CLUS_5           1            51
  CLUS_6           0            61
  CLUS_7           3            79
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        0      1      1     23
  MET WILD-TYPE    107    178    232    239
D8V7, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           0           107
  CLUS_2           1           178
  CLUS_3           1           232
  CLUS_4          23           239
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MET MUTATED        0      3      0      1      0      0      0      1     20
  MET WILD-TYPE     84     47    122     76    107     32     90     51    147
D8V8, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           0            84
  CLUS_2           3            47
  CLUS_3           0           122
  CLUS_4           1            76
  CLUS_5           0           107
  CLUS_6           0            32
  CLUS_7           0            90
  CLUS_8           1            51
  CLUS_9          20           147
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED       20      4      1
  MET WILD-TYPE    309    160    281
D8V9, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1          20           309
  CLUS_2           4           160
  CLUS_3           1           281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        0      5      0     20
  MET WILD-TYPE     73    295    198    184
D8V10, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           0            73
  CLUS_2           5           295
  CLUS_3           0           198
  CLUS_4          20           184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED       14      1      2      0
  MET WILD-TYPE    141     65     54     96
D8V11, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1          14           141
  CLUS_2           1            65
  CLUS_3           2            54
  CLUS_4           0            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MET MUTATED        7      4      6      0      0      0      0
  MET WILD-TYPE     83     69     44     19     37     58     46
D8V12, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           7            83
  CLUS_2           4            69
  CLUS_3           6            44
  CLUS_4           0            19
  CLUS_5           0            37
  CLUS_6           0            58
  CLUS_7           0            46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = KDM5C MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5C MUTATED        1      0      0      0
  KDM5C WILD-TYPE     16     16     10     15
D9V1, multiclass
[1] "Remove cluster labels:" "KDM5C MUTATED"         
clus
  KDM5C MUTATED KDM5C WILD-TYPE 
              1              57 
     TCGA-A3-3311      TCGA-A3-3313      TCGA-A3-3317      TCGA-A3-3322 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3347      TCGA-A3-3349 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-A3-3362      TCGA-A3-3374      TCGA-AK-3427      TCGA-AK-3440 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455      TCGA-AK-3456 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467      TCGA-AL-3468 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777      TCGA-B2-3923 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099      TCGA-B3-3925 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-B9-4617      TCGA-BP-4161 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-BP-4162      TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CJ-4634      TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CJ-4639      TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CJ-4644 
"KDM5C WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM5C MUTATED        0      0      0      1      0
  KDM5C WILD-TYPE      7     16     16      9      9
D9V2, multiclass
[1] "Remove cluster labels:" "KDM5C MUTATED"         
clus
  KDM5C MUTATED KDM5C WILD-TYPE 
              1              57 
     TCGA-A3-3311      TCGA-A3-3313      TCGA-A3-3317      TCGA-A3-3322 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3347      TCGA-A3-3349 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-A3-3362      TCGA-A3-3374      TCGA-AK-3427      TCGA-AK-3440 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455      TCGA-AK-3456 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467      TCGA-AL-3468 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777      TCGA-B2-3923 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099      TCGA-B3-3925 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-B9-4617      TCGA-BP-4161 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-BP-4162      TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CJ-4634      TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CJ-4639      TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CJ-4644 
"KDM5C WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        3      8     16
  KDM5C WILD-TYPE    310    160    282
D9V3, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             3             310
  CLUS_2             8             160
  CLUS_3            16             282
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM5C MUTATED        1      7      6      4      1
  KDM5C WILD-TYPE     94    104    136     59    184
D9V4, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1              94
  CLUS_2             7             104
  CLUS_3             6             136
  CLUS_4             4              59
  CLUS_5             1             184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5C MUTATED        4      7      4      9
  KDM5C WILD-TYPE    159    154    166    166
D9V5, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             4             159
  CLUS_2             7             154
  CLUS_3             4             166
  CLUS_4             9             166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDM5C MUTATED       10      0      5      6      1      1      1
  KDM5C WILD-TYPE    168     62    100    123     51     60     81
D9V6, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1            10             168
  CLUS_2             0              62
  CLUS_3             5             100
  CLUS_4             6             123
  CLUS_5             1              51
  CLUS_6             1              60
  CLUS_7             1              81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5C MUTATED        1     12     12      1
  KDM5C WILD-TYPE    106    167    221    261
D9V7, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1             106
  CLUS_2            12             167
  CLUS_3            12             221
  CLUS_4             1             261
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KDM5C MUTATED        1      0      8      0      6      0      3      7
  KDM5C WILD-TYPE     83     50    114     77    101     32     87     45
                 vv
clus              CLUS_9
  KDM5C MUTATED        1
  KDM5C WILD-TYPE    166
D9V8, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              50
  CLUS_3             8             114
  CLUS_4             0              77
  CLUS_5             6             101
  CLUS_6             0              32
  CLUS_7             3              87
  CLUS_8             7              45
  CLUS_9             1             166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        2      3     22
  KDM5C WILD-TYPE    327    161    260
D9V9, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             2             327
  CLUS_2             3             161
  CLUS_3            22             260
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5C MUTATED        1     13     12      1
  KDM5C WILD-TYPE     72    287    186    203
D9V10, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1              72
  CLUS_2            13             287
  CLUS_3            12             186
  CLUS_4             1             203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5C MUTATED        1      1      0      3
  KDM5C WILD-TYPE    154     65     56     93
D9V11, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1             154
  CLUS_2             1              65
  CLUS_3             0              56
  CLUS_4             3              93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDM5C MUTATED        1      0      0      0      1      2      1
  KDM5C WILD-TYPE     89     73     50     19     36     56     45
D9V12, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1              89
  CLUS_2             0              73
  CLUS_3             0              50
  CLUS_4             0              19
  CLUS_5             1              36
  CLUS_6             2              56
  CLUS_7             1              45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = MTOR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTOR MUTATED        1      1      0      0
  MTOR WILD-TYPE     16     15     10     15
D10V1, multiclass
[1] "Remove cluster labels:" "MTOR MUTATED"          
clus
  MTOR MUTATED MTOR WILD-TYPE 
             2             56 
    TCGA-A3-3311     TCGA-A3-3313     TCGA-A3-3317     TCGA-A3-3322 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3349 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-A3-3362     TCGA-A3-3374     TCGA-AK-3427     TCGA-AK-3440 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455     TCGA-AK-3456 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3468 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777     TCGA-B2-3923 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104     TCGA-B8-4143 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B8-4148     TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617     TCGA-BP-4161 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-BP-4162     TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-CJ-4634     TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-CJ-4639     TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTOR MUTATED        0      1      0      1      0
  MTOR WILD-TYPE      7     15     16      9      9
D10V2, multiclass
[1] "Remove cluster labels:" "MTOR MUTATED"          
clus
  MTOR MUTATED MTOR WILD-TYPE 
             2             56 
    TCGA-A3-3311     TCGA-A3-3313     TCGA-A3-3317     TCGA-A3-3322 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3349 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-A3-3362     TCGA-A3-3374     TCGA-AK-3427     TCGA-AK-3440 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455     TCGA-AK-3456 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3468 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777     TCGA-B2-3923 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104     TCGA-B8-4143 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B8-4148     TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617     TCGA-BP-4161 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-BP-4162     TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-CJ-4634     TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
    TCGA-CJ-4639     TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643 
"MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" "MTOR WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTOR MUTATED        3     10     21
  MTOR WILD-TYPE    310    158    277
D10V3, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            3            310
  CLUS_2           10            158
  CLUS_3           21            277
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTOR MUTATED        6      6     10      7      0
  MTOR WILD-TYPE     89    105    132     56    185
D10V4, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            6             89
  CLUS_2            6            105
  CLUS_3           10            132
  CLUS_4            7             56
  CLUS_5            0            185
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTOR MUTATED        3      7      4     15
  MTOR WILD-TYPE    160    154    166    160
D10V5, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            3            160
  CLUS_2            7            154
  CLUS_3            4            166
  CLUS_4           15            160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTOR MUTATED       13      3      2      5      5      0      1
  MTOR WILD-TYPE    165     59    103    124     47     61     81
D10V6, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1           13            165
  CLUS_2            3             59
  CLUS_3            2            103
  CLUS_4            5            124
  CLUS_5            5             47
  CLUS_6            0             61
  CLUS_7            1             81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTOR MUTATED        4     12     14      4
  MTOR WILD-TYPE    103    167    219    258
D10V7, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            4            103
  CLUS_2           12            167
  CLUS_3           14            219
  CLUS_4            4            258
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MTOR MUTATED        3      3      4      2      8      1      9      3      1
  MTOR WILD-TYPE     81     47    118     75     99     31     81     49    166
D10V8, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            3             81
  CLUS_2            3             47
  CLUS_3            4            118
  CLUS_4            2             75
  CLUS_5            8             99
  CLUS_6            1             31
  CLUS_7            9             81
  CLUS_8            3             49
  CLUS_9            1            166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTOR MUTATED        4      9     21
  MTOR WILD-TYPE    325    155    261
D10V9, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            4            325
  CLUS_2            9            155
  CLUS_3           21            261
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTOR MUTATED        0     23     10      1
  MTOR WILD-TYPE     73    277    188    203
D10V10, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            0             73
  CLUS_2           23            277
  CLUS_3           10            188
  CLUS_4            1            203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTOR MUTATED        2      3      2      6
  MTOR WILD-TYPE    153     63     54     90
D10V11, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            2            153
  CLUS_2            3             63
  CLUS_3            2             54
  CLUS_4            6             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTOR MUTATED        0      4      0      3      1      5      0
  MTOR WILD-TYPE     90     69     50     16     36     53     46
D10V12, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            0             90
  CLUS_2            4             69
  CLUS_3            0             50
  CLUS_4            3             16
  CLUS_5            1             36
  CLUS_6            5             53
  CLUS_7            0             46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = ZNF814 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF814 MUTATED        0      0      0      0
  ZNF814 WILD-TYPE     17     16     10     15
D11V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF814 MUTATED        0      0      0      0      0
  ZNF814 WILD-TYPE      7     16     16     10      9
D11V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF814 MUTATED        8      2      4
  ZNF814 WILD-TYPE    305    166    294
D11V3, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              8              305
  CLUS_2              2              166
  CLUS_3              4              294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF814 MUTATED        4      2      0      3      5
  ZNF814 WILD-TYPE     91    109    142     60    180
D11V4, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              2              109
  CLUS_3              0              142
  CLUS_4              3               60
  CLUS_5              5              180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF814 MUTATED        4      3      3      2
  ZNF814 WILD-TYPE    159    158    167    173
D11V5, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              4              159
  CLUS_2              3              158
  CLUS_3              3              167
  CLUS_4              2              173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF814 MUTATED        5      2      2      1      1      0      1
  ZNF814 WILD-TYPE    173     60    103    128     51     61     81
D11V6, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              2               60
  CLUS_3              2              103
  CLUS_4              1              128
  CLUS_5              1               51
  CLUS_6              0               61
  CLUS_7              1               81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF814 MUTATED        4      1      1      8
  ZNF814 WILD-TYPE    103    178    232    254
D11V7, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              4              103
  CLUS_2              1              178
  CLUS_3              1              232
  CLUS_4              8              254
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF814 MUTATED        4      0      1      4      1      0      0      0
  ZNF814 WILD-TYPE     80     50    121     73    106     32     90     52
                  vv
clus               CLUS_9
  ZNF814 MUTATED        4
  ZNF814 WILD-TYPE    163
D11V8, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              4               80
  CLUS_2              0               50
  CLUS_3              1              121
  CLUS_4              4               73
  CLUS_5              1              106
  CLUS_6              0               32
  CLUS_7              0               90
  CLUS_8              0               52
  CLUS_9              4              163
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF814 MUTATED        9      4      1
  ZNF814 WILD-TYPE    320    160    281
D11V9, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              9              320
  CLUS_2              4              160
  CLUS_3              1              281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF814 MUTATED        3      4      1      6
  ZNF814 WILD-TYPE     70    296    197    198
D11V10, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              4              296
  CLUS_3              1              197
  CLUS_4              6              198
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF814 MUTATED        4      3      2      1
  ZNF814 WILD-TYPE    151     63     54     95
D11V11, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              4              151
  CLUS_2              3               63
  CLUS_3              2               54
  CLUS_4              1               95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF814 MUTATED        3      3      0      1      0      1      2
  ZNF814 WILD-TYPE     87     70     50     18     37     57     44
D11V12, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              3               87
  CLUS_2              3               70
  CLUS_3              0               50
  CLUS_4              1               18
  CLUS_5              0               37
  CLUS_6              1               57
  CLUS_7              2               44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AR MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AR MUTATED        0      0      0      0
  AR WILD-TYPE     17     16     10     15
D12V1, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AR MUTATED        0      0      0      0      0
  AR WILD-TYPE      7     16     16     10      9
D12V2, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  AR MUTATED       13      0      2
  AR WILD-TYPE    300    168    296
D12V3, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1         13          300
  CLUS_2          0          168
  CLUS_3          2          296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AR MUTATED        2      1      1      1     10
  AR WILD-TYPE     93    110    141     62    175
D12V4, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          2           93
  CLUS_2          1          110
  CLUS_3          1          141
  CLUS_4          1           62
  CLUS_5         10          175
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AR MUTATED        2      2      4      2
  AR WILD-TYPE    161    159    166    173
D12V5, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          2          161
  CLUS_2          2          159
  CLUS_3          4          166
  CLUS_4          2          173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AR MUTATED        3      3      1      1      0      1      1
  AR WILD-TYPE    175     59    104    128     52     60     81
D12V6, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          3          175
  CLUS_2          3           59
  CLUS_3          1          104
  CLUS_4          1          128
  CLUS_5          0           52
  CLUS_6          1           60
  CLUS_7          1           81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AR MUTATED        1      0      1     13
  AR WILD-TYPE    106    179    232    249
D12V7, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          1          106
  CLUS_2          0          179
  CLUS_3          1          232
  CLUS_4         13          249
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AR MUTATED        1      1      0      5      0      0      1      0      7
  AR WILD-TYPE     83     49    122     72    107     32     89     52    160
D12V8, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          1           83
  CLUS_2          1           49
  CLUS_3          0          122
  CLUS_4          5           72
  CLUS_5          0          107
  CLUS_6          0           32
  CLUS_7          1           89
  CLUS_8          0           52
  CLUS_9          7          160
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  AR MUTATED       12      2      1
  AR WILD-TYPE    317    162    281
D12V9, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1         12          317
  CLUS_2          2          162
  CLUS_3          1          281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AR MUTATED        1      3      1     10
  AR WILD-TYPE     72    297    197    194
D12V10, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          1           72
  CLUS_2          3          297
  CLUS_3          1          197
  CLUS_4         10          194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AR MUTATED        9      2      2      0
  AR WILD-TYPE    146     64     54     96
D12V11, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          9          146
  CLUS_2          2           64
  CLUS_3          2           54
  CLUS_4          0           96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AR MUTATED        7      2      2      1      0      0      1
  AR WILD-TYPE     83     71     48     18     37     58     45
D12V12, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          7           83
  CLUS_2          2           71
  CLUS_3          2           48
  CLUS_4          1           18
  CLUS_5          0           37
  CLUS_6          0           58
  CLUS_7          1           45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = STAG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        0      0      1      0
  STAG2 WILD-TYPE     17     16      9     15
D13V1, multiclass
[1] "Remove cluster labels:" "STAG2 MUTATED"         
clus
  STAG2 MUTATED STAG2 WILD-TYPE 
              1              57 
     TCGA-A3-3311      TCGA-A3-3313      TCGA-A3-3317      TCGA-A3-3322 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3374      TCGA-AK-3427 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-AL-3468      TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B3-3925      TCGA-B3-3926      TCGA-B3-4103      TCGA-B8-4143 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-B9-4617      TCGA-BP-4161 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-BP-4162      TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-CJ-4634      TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-CJ-4639      TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-CJ-4644 
"STAG2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAG2 MUTATED        0      0      0      0      1
  STAG2 WILD-TYPE      7     16     16     10      8
D13V2, multiclass
[1] "Remove cluster labels:" "STAG2 MUTATED"         
clus
  STAG2 MUTATED STAG2 WILD-TYPE 
              1              57 
     TCGA-A3-3311      TCGA-A3-3313      TCGA-A3-3317      TCGA-A3-3322 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3374      TCGA-AK-3427 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-AL-3468      TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B3-3925      TCGA-B3-3926      TCGA-B3-4103      TCGA-B8-4143 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-B9-4617      TCGA-BP-4161 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-BP-4162      TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-CJ-4634      TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-CJ-4639      TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-CJ-4644 
"STAG2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        6      4      5
  STAG2 WILD-TYPE    307    164    293
D13V3, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             6             307
  CLUS_2             4             164
  CLUS_3             5             293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAG2 MUTATED        1      6      1      3      2
  STAG2 WILD-TYPE     94    105    141     60    183
D13V4, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             6             105
  CLUS_3             1             141
  CLUS_4             3              60
  CLUS_5             2             183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        3      1      3      5
  STAG2 WILD-TYPE    160    160    167    170
D13V5, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             3             160
  CLUS_2             1             160
  CLUS_3             3             167
  CLUS_4             5             170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STAG2 MUTATED        1      3      1      3      2      0      2
  STAG2 WILD-TYPE    177     59    104    126     50     61     80
D13V6, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             1             177
  CLUS_2             3              59
  CLUS_3             1             104
  CLUS_4             3             126
  CLUS_5             2              50
  CLUS_6             0              61
  CLUS_7             2              80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        3      5      3      4
  STAG2 WILD-TYPE    104    174    230    258
D13V7, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             3             104
  CLUS_2             5             174
  CLUS_3             3             230
  CLUS_4             4             258
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STAG2 MUTATED        0      3      0      3      3      1      3      1
  STAG2 WILD-TYPE     84     47    122     74    104     31     87     51
                 vv
clus              CLUS_9
  STAG2 MUTATED        1
  STAG2 WILD-TYPE    166
D13V8, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              47
  CLUS_3             0             122
  CLUS_4             3              74
  CLUS_5             3             104
  CLUS_6             1              31
  CLUS_7             3              87
  CLUS_8             1              51
  CLUS_9             1             166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        6      5      4
  STAG2 WILD-TYPE    323    159    278
D13V9, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             6             323
  CLUS_2             5             159
  CLUS_3             4             278
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        0      9      3      3
  STAG2 WILD-TYPE     73    291    195    201
D13V10, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             0              73
  CLUS_2             9             291
  CLUS_3             3             195
  CLUS_4             3             201
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        3      1      4      2
  STAG2 WILD-TYPE    152     65     52     94
D13V11, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             3             152
  CLUS_2             1              65
  CLUS_3             4              52
  CLUS_4             2              94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STAG2 MUTATED        2      3      1      0      3      1      0
  STAG2 WILD-TYPE     88     70     49     19     34     57     46
D13V12, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             2              88
  CLUS_2             3              70
  CLUS_3             1              49
  CLUS_4             0              19
  CLUS_5             3              34
  CLUS_6             1              57
  CLUS_7             0              46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = KRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        0      0      0      0
  KRAS WILD-TYPE     17     16     10     15
D14V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED        0      0      0      0      0
  KRAS WILD-TYPE      7     16     16     10      9
D14V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        2      3      1
  KRAS WILD-TYPE    311    165    297
D14V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            2            311
  CLUS_2            3            165
  CLUS_3            1            297
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED        3      1      0      0      2
  KRAS WILD-TYPE     92    110    142     63    183
D14V4, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1            110
  CLUS_3            0            142
  CLUS_4            0             63
  CLUS_5            2            183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        0      0      2      1
  KRAS WILD-TYPE    163    161    168    174
D14V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            0            163
  CLUS_2            0            161
  CLUS_3            2            168
  CLUS_4            1            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRAS MUTATED        0      1      1      1      0      0      0
  KRAS WILD-TYPE    178     61    104    128     52     61     82
D14V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            0            178
  CLUS_2            1             61
  CLUS_3            1            104
  CLUS_4            1            128
  CLUS_5            0             52
  CLUS_6            0             61
  CLUS_7            0             82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        3      1      0      2
  KRAS WILD-TYPE    104    178    233    260
D14V7, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            3            104
  CLUS_2            1            178
  CLUS_3            0            233
  CLUS_4            2            260
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  KRAS MUTATED        3      0      0      0      1      0      0      0      2
  KRAS WILD-TYPE     81     50    122     77    106     32     90     52    165
D14V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            3             81
  CLUS_2            0             50
  CLUS_3            0            122
  CLUS_4            0             77
  CLUS_5            1            106
  CLUS_6            0             32
  CLUS_7            0             90
  CLUS_8            0             52
  CLUS_9            2            165
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        4      2      0
  KRAS WILD-TYPE    325    162    282
D14V9, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            4            325
  CLUS_2            2            162
  CLUS_3            0            282
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        0      4      0      2
  KRAS WILD-TYPE     73    296    198    202
D14V10, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            0             73
  CLUS_2            4            296
  CLUS_3            0            198
  CLUS_4            2            202
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        2      3      0      0
  KRAS WILD-TYPE    153     63     56     96
D14V11, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            2            153
  CLUS_2            3             63
  CLUS_3            0             56
  CLUS_4            0             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRAS MUTATED        1      0      1      3      0      0      0
  KRAS WILD-TYPE     89     73     49     16     37     58     46
D14V12, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            1             89
  CLUS_2            0             73
  CLUS_3            1             49
  CLUS_4            3             16
  CLUS_5            0             37
  CLUS_6            0             58
  CLUS_7            0             46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = SLC6A14 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A14 MUTATED        0      0      0      0
  SLC6A14 WILD-TYPE     17     16     10     15
D15V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A14 MUTATED        0      0      0      0      0
  SLC6A14 WILD-TYPE      7     16     16     10      9
D15V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC6A14 MUTATED        1      1      2
  SLC6A14 WILD-TYPE    312    167    296
D15V3, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               1               312
  CLUS_2               1               167
  CLUS_3               2               296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A14 MUTATED        1      0      0      1      0
  SLC6A14 WILD-TYPE     94    111    142     62    185
D15V4, multiclass
[1] "Remove cluster labels:" "SLC6A14 MUTATED"       
clus
  SLC6A14 MUTATED SLC6A14 WILD-TYPE 
                2               594 
       TCGA-2K-A9WE        TCGA-2Z-A9J1        TCGA-2Z-A9J2        TCGA-2Z-A9J3 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-2Z-A9J5        TCGA-2Z-A9J6        TCGA-2Z-A9J7        TCGA-2Z-A9J8 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-2Z-A9JD        TCGA-2Z-A9JE        TCGA-2Z-A9JG        TCGA-2Z-A9JI 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-2Z-A9JJ        TCGA-2Z-A9JK        TCGA-2Z-A9JL        TCGA-2Z-A9JM 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-2Z-A9JN        TCGA-2Z-A9JO        TCGA-2Z-A9JP        TCGA-2Z-A9JQ 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-2Z-A9JR        TCGA-2Z-A9JS        TCGA-2Z-A9JT        TCGA-4A-A93W 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-4A-A93X        TCGA-4A-A93Y        TCGA-5P-A9JU        TCGA-5P-A9JV 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-5P-A9JW        TCGA-5P-A9JY        TCGA-5P-A9JZ        TCGA-5P-A9K0 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-5P-A9K2        TCGA-5P-A9K3        TCGA-5P-A9K6        TCGA-5P-A9K8 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-5P-A9KA        TCGA-5P-A9KC        TCGA-5P-A9KE        TCGA-5P-A9KH 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-A3-3357        TCGA-A3-3358        TCGA-A3-3367        TCGA-A3-3370 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-A3-3373        TCGA-A3-3376        TCGA-A3-3385        TCGA-A3-3387 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-A4-7286        TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7583 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-A4-7584        TCGA-A4-7585        TCGA-A4-7732        TCGA-A4-7734 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8311        TCGA-A4-8312 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-A4-8515        TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-A4-A48D        TCGA-A4-A4ZT        TCGA-A4-A57E        TCGA-A4-A5DU 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-A4-A6HP 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-A4-A772        TCGA-A4-A7UZ        TCGA-AK-3425        TCGA-AK-3428 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-AK-3431        TCGA-AK-3434        TCGA-AK-3440        TCGA-AK-3445 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-AK-3450        TCGA-AK-3453        TCGA-AK-3454        TCGA-AK-3458 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-AK-3460        TCGA-AK-3461        TCGA-AL-7173        TCGA-AL-A5DJ 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-AT-A5NU        TCGA-B0-4690        TCGA-B0-4691        TCGA-B0-4693 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-4694        TCGA-B0-4697        TCGA-B0-4700        TCGA-B0-4703 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-4706        TCGA-B0-4707        TCGA-B0-4710        TCGA-B0-4712 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-4713        TCGA-B0-4714        TCGA-B0-4718        TCGA-B0-4810 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-4811        TCGA-B0-4813        TCGA-B0-4814        TCGA-B0-4815 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-4816        TCGA-B0-4817        TCGA-B0-4818        TCGA-B0-4819 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-4822        TCGA-B0-4823        TCGA-B0-4824        TCGA-B0-4827 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-4828        TCGA-B0-4841        TCGA-B0-4842        TCGA-B0-4843 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-4844        TCGA-B0-4845        TCGA-B0-4846        TCGA-B0-4847 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-4848        TCGA-B0-4849        TCGA-B0-4852        TCGA-B0-4945 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-5080        TCGA-B0-5083        TCGA-B0-5092        TCGA-B0-5094 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-5095        TCGA-B0-5096        TCGA-B0-5097        TCGA-B0-5098 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-5099        TCGA-B0-5100        TCGA-B0-5102        TCGA-B0-5104 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-5106        TCGA-B0-5107        TCGA-B0-5108        TCGA-B0-5109 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-5110        TCGA-B0-5113        TCGA-B0-5115        TCGA-B0-5116 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-5117        TCGA-B0-5119        TCGA-B0-5120        TCGA-B0-5121 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-5399        TCGA-B0-5400        TCGA-B0-5402        TCGA-B0-5691 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694        TCGA-B0-5695 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-5696        TCGA-B0-5697        TCGA-B0-5698        TCGA-B0-5699 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-5701        TCGA-B0-5702        TCGA-B0-5703        TCGA-B0-5705 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-5706        TCGA-B0-5707        TCGA-B0-5709        TCGA-B0-5710 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B0-5711        TCGA-B0-5712        TCGA-B0-5713        TCGA-B0-5812 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B1-5398        TCGA-B1-7332        TCGA-B1-A47M        TCGA-B1-A47N 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B1-A47O        TCGA-B1-A654        TCGA-B1-A655        TCGA-B1-A656 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B1-A657        TCGA-B2-3924        TCGA-B2-4101        TCGA-B2-5633 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B2-5635        TCGA-B2-5641        TCGA-B3-8121        TCGA-B3-A6W5 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B4-5377        TCGA-B4-5832        TCGA-B4-5834        TCGA-B4-5835 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B4-5836        TCGA-B4-5838        TCGA-B4-5843        TCGA-B4-5844 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B8-4146        TCGA-B8-4153        TCGA-B8-4621        TCGA-B8-4622 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B8-5158        TCGA-B8-5159        TCGA-B8-5162        TCGA-B8-5163 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B8-5164        TCGA-B8-5165        TCGA-B8-5545        TCGA-B8-5546 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B8-5549        TCGA-B8-5550        TCGA-B8-5551        TCGA-B8-5552 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B8-5553        TCGA-B9-5155        TCGA-B9-5156        TCGA-B9-7268 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B9-A44B        TCGA-B9-A5W7        TCGA-B9-A5W8        TCGA-B9-A5W9 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-B9-A69E        TCGA-B9-A8YH        TCGA-B9-A8YI        TCGA-BP-4177 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BP-4760        TCGA-BP-4770        TCGA-BP-4782        TCGA-BP-4795 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BP-4801        TCGA-BP-4993        TCGA-BP-5010        TCGA-BP-5168 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BP-5169        TCGA-BP-5170        TCGA-BP-5173        TCGA-BP-5174 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BP-5175        TCGA-BP-5176        TCGA-BP-5177        TCGA-BP-5178 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BP-5180        TCGA-BP-5181        TCGA-BP-5182        TCGA-BP-5183 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BP-5184        TCGA-BP-5185        TCGA-BP-5186        TCGA-BP-5187 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BP-5189        TCGA-BP-5190        TCGA-BP-5191        TCGA-BP-5192 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BP-5194        TCGA-BP-5195        TCGA-BP-5196        TCGA-BP-5198 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BP-5199        TCGA-BP-5200        TCGA-BP-5201        TCGA-BP-5202 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BQ-5875        TCGA-BQ-5876        TCGA-BQ-5877        TCGA-BQ-5878 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BQ-5879        TCGA-BQ-5880        TCGA-BQ-5881        TCGA-BQ-5882 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BQ-5883        TCGA-BQ-5884        TCGA-BQ-5885        TCGA-BQ-5886 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BQ-5887        TCGA-BQ-5888        TCGA-BQ-5889        TCGA-BQ-5890 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BQ-5891        TCGA-BQ-5892        TCGA-BQ-5893        TCGA-BQ-5894 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BQ-7044        TCGA-BQ-7045        TCGA-BQ-7046        TCGA-BQ-7048 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BQ-7049        TCGA-BQ-7050        TCGA-BQ-7051        TCGA-BQ-7053 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BQ-7055        TCGA-BQ-7056        TCGA-BQ-7058        TCGA-BQ-7059 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062        TCGA-CJ-4869 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CJ-4882        TCGA-CJ-4897        TCGA-CJ-4901        TCGA-CJ-4902 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CJ-4903        TCGA-CJ-4904        TCGA-CJ-4905        TCGA-CJ-4907 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CJ-4908        TCGA-CJ-4912        TCGA-CJ-4913        TCGA-CJ-4916 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CJ-4918        TCGA-CJ-4920        TCGA-CJ-4923        TCGA-CJ-5671 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CJ-5672        TCGA-CJ-5675        TCGA-CJ-5676        TCGA-CJ-5677 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CJ-5678        TCGA-CJ-5679        TCGA-CJ-5680        TCGA-CJ-5681 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CJ-5682        TCGA-CJ-5683        TCGA-CJ-5684        TCGA-CJ-5686 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CJ-6027        TCGA-CJ-6028        TCGA-CJ-6030        TCGA-CJ-6031 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CJ-6032        TCGA-CJ-6033        TCGA-CW-5580        TCGA-CW-5581 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CW-5583        TCGA-CW-5585        TCGA-CW-5588        TCGA-CW-5589 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CW-5591        TCGA-CW-6087        TCGA-CW-6090        TCGA-CW-6093 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CW-6097        TCGA-CZ-4853        TCGA-CZ-4856        TCGA-CZ-4859 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CZ-4863        TCGA-CZ-4865        TCGA-CZ-4866        TCGA-CZ-5451 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CZ-5452        TCGA-CZ-5453        TCGA-CZ-5454        TCGA-CZ-5455 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CZ-5456        TCGA-CZ-5457        TCGA-CZ-5458        TCGA-CZ-5459 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CZ-5460        TCGA-CZ-5461        TCGA-CZ-5462        TCGA-CZ-5463 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CZ-5465        TCGA-CZ-5466        TCGA-CZ-5467        TCGA-CZ-5468 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5982        TCGA-CZ-5984 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CZ-5985        TCGA-CZ-5986        TCGA-CZ-5987        TCGA-CZ-5988 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-CZ-5989        TCGA-DV-5565        TCGA-DV-5566        TCGA-DV-5568 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-DV-5569        TCGA-DV-5574        TCGA-DV-5575        TCGA-DV-5576 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-DW-5560        TCGA-DW-5561        TCGA-DW-7834        TCGA-DW-7836 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-DW-7837        TCGA-DW-7838        TCGA-DW-7839        TCGA-DW-7840 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-DW-7841        TCGA-DW-7842        TCGA-DW-7963        TCGA-DZ-6131 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-DZ-6132        TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-EU-5904        TCGA-EU-5905        TCGA-EU-5906        TCGA-EU-5907 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-EV-5901        TCGA-EV-5902        TCGA-EV-5903        TCGA-F9-A4JJ 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-F9-A7Q0        TCGA-F9-A7VF        TCGA-F9-A8NY        TCGA-F9-A97G 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-G7-6790        TCGA-G7-6792        TCGA-G7-6793        TCGA-G7-6795 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-G7-6796        TCGA-G7-6797        TCGA-G7-7501        TCGA-G7-7502 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-G7-A4TM        TCGA-G7-A8LB        TCGA-G7-A8LC        TCGA-G7-A8LD 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-G7-A8LE        TCGA-GL-6846        TCGA-GL-7773        TCGA-GL-7966 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59R        TCGA-GL-A59T 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-GL-A9DC        TCGA-GL-A9DD        TCGA-GL-A9DE        TCGA-HE-7128 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-HE-7129        TCGA-HE-7130        TCGA-HE-A5NF        TCGA-HE-A5NH 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-HE-A5NI        TCGA-HE-A5NJ        TCGA-HE-A5NK        TCGA-HE-A5NL 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-IA-A40U        TCGA-IA-A40X        TCGA-IA-A40Y        TCGA-IA-A83S 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-IA-A83T        TCGA-IA-A83V        TCGA-IA-A83W        TCGA-IZ-8195 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-IZ-8196        TCGA-IZ-A6M8        TCGA-IZ-A6M9        TCGA-J7-6720 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-J7-8537        TCGA-J7-A8I2        TCGA-KL-8323        TCGA-KL-8324 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KL-8325        TCGA-KL-8326        TCGA-KL-8327        TCGA-KL-8328 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KL-8329        TCGA-KL-8330        TCGA-KL-8331        TCGA-KL-8332 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KL-8333        TCGA-KL-8334        TCGA-KL-8335        TCGA-KL-8336 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KL-8337        TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KL-8341        TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KL-8345        TCGA-KL-8346        TCGA-KM-8438        TCGA-KM-8439 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KM-8440        TCGA-KM-8441        TCGA-KM-8442        TCGA-KM-8443 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KM-8476        TCGA-KM-8477        TCGA-KM-8639        TCGA-KN-8418 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KN-8419        TCGA-KN-8421        TCGA-KN-8422        TCGA-KN-8423 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KN-8424        TCGA-KN-8425        TCGA-KN-8426        TCGA-KN-8427 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KN-8428        TCGA-KN-8429        TCGA-KN-8430        TCGA-KN-8431 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KN-8432        TCGA-KN-8433        TCGA-KN-8434        TCGA-KN-8435 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KN-8436        TCGA-KN-8437        TCGA-KO-8403        TCGA-KO-8404 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KO-8405        TCGA-KO-8406        TCGA-KO-8407        TCGA-KO-8408 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KO-8409        TCGA-KO-8410        TCGA-KO-8411        TCGA-KO-8413 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KO-8414        TCGA-KO-8415        TCGA-KO-8417        TCGA-KV-A6GD 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-KV-A6GE        TCGA-KV-A74V        TCGA-MH-A55W        TCGA-MH-A55Z 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-MH-A560        TCGA-MH-A561        TCGA-MH-A562        TCGA-MH-A854 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-MH-A855        TCGA-MH-A856        TCGA-MH-A857        TCGA-O9-A75Z 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-P4-A5E6        TCGA-P4-A5E7        TCGA-P4-A5E8        TCGA-P4-A5EA 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-P4-A5EB        TCGA-P4-A5ED        TCGA-P4-AAVL        TCGA-P4-AAVM 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-PJ-A8JU        TCGA-Q2-A5QZ 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-SX-A71R        TCGA-SX-A71S        TCGA-SX-A71U        TCGA-SX-A71V 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-SX-A71W        TCGA-SX-A7SL        TCGA-SX-A7SM        TCGA-SX-A7SN 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-SX-A7SO        TCGA-SX-A7SP        TCGA-SX-A7SQ        TCGA-SX-A7SR 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-SX-A7SS        TCGA-SX-A7SU        TCGA-UN-AAZ9        TCGA-UZ-A9PJ 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-UZ-A9PK        TCGA-UZ-A9PL        TCGA-UZ-A9PM        TCGA-UZ-A9PN 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-UZ-A9PO        TCGA-UZ-A9PP        TCGA-UZ-A9PR        TCGA-UZ-A9PS 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-UZ-A9PU        TCGA-UZ-A9PV        TCGA-UZ-A9PX        TCGA-UZ-A9PZ 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-UZ-A9Q0        TCGA-UZ-A9Q1        TCGA-V9-A7HT        TCGA-WN-A9G9 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-WN-AB4C        TCGA-Y8-A894        TCGA-Y8-A895        TCGA-Y8-A896 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-Y8-A897        TCGA-Y8-A898        TCGA-Y8-A8RY        TCGA-Y8-A8RZ 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
       TCGA-Y8-A8S0        TCGA-Y8-A8S1 
"SLC6A14 WILD-TYPE" "SLC6A14 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A14 MUTATED        1      0      2      1
  SLC6A14 WILD-TYPE    162    161    168    174
D15V5, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               1               162
  CLUS_2               0               161
  CLUS_3               2               168
  CLUS_4               1               174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC6A14 MUTATED        0      1      0      0      1      1      1
  SLC6A14 WILD-TYPE    178     61    105    129     51     60     81
D15V6, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               0               178
  CLUS_2               1                61
  CLUS_3               0               105
  CLUS_4               0               129
  CLUS_5               1                51
  CLUS_6               1                60
  CLUS_7               1                81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A14 MUTATED        1      2      1      0
  SLC6A14 WILD-TYPE    106    177    232    262
D15V7, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               1               106
  CLUS_2               2               177
  CLUS_3               1               232
  CLUS_4               0               262
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC6A14 MUTATED        1      1      0      0      1      0      1      0
  SLC6A14 WILD-TYPE     83     49    122     77    106     32     89     52
                   vv
clus                CLUS_9
  SLC6A14 MUTATED        0
  SLC6A14 WILD-TYPE    167
D15V8, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                49
  CLUS_3               0               122
  CLUS_4               0                77
  CLUS_5               1               106
  CLUS_6               0                32
  CLUS_7               1                89
  CLUS_8               0                52
  CLUS_9               0               167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC6A14 MUTATED        1      3      0
  SLC6A14 WILD-TYPE    328    161    282
D15V9, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               1               328
  CLUS_2               3               161
  CLUS_3               0               282
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A14 MUTATED        1      2      1      0
  SLC6A14 WILD-TYPE     72    298    197    204
D15V10, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               1                72
  CLUS_2               2               298
  CLUS_3               1               197
  CLUS_4               0               204
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A14 MUTATED        0      1      2      0
  SLC6A14 WILD-TYPE    155     65     54     96
D15V11, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               0               155
  CLUS_2               1                65
  CLUS_3               2                54
  CLUS_4               0                96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC6A14 MUTATED        0      1      0      0      1      0      1
  SLC6A14 WILD-TYPE     90     72     50     19     36     58     45
D15V12, multiclass
        clus
vv       SLC6A14 MUTATED SLC6A14 WILD-TYPE
  CLUS_1               0                90
  CLUS_2               1                72
  CLUS_3               0                50
  CLUS_4               0                19
  CLUS_5               1                36
  CLUS_6               0                58
  CLUS_7               1                45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = SMARCA4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        1      0      0      1
  SMARCA4 WILD-TYPE     16     16     10     14
D16V1, multiclass
[1] "Remove cluster labels:" "SMARCA4 MUTATED"       
clus
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
                2                56 
       TCGA-A3-3311        TCGA-A3-3313        TCGA-A3-3317        TCGA-A3-3323 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-A3-3326        TCGA-A3-3331        TCGA-A3-3347        TCGA-A3-3349 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-A3-3362        TCGA-A3-3374        TCGA-AK-3427        TCGA-AK-3440 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3455        TCGA-AK-3456 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467        TCGA-AL-3472 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-AL-3473        TCGA-AS-3777        TCGA-B2-3923        TCGA-B2-3924 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-B2-4098        TCGA-B2-4099        TCGA-B3-3925        TCGA-B3-3926 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-B3-4103        TCGA-B3-4104        TCGA-B8-4143        TCGA-B8-4148 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4619        TCGA-B8-4620 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4115        TCGA-B9-4116 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-B9-4117        TCGA-B9-4617        TCGA-BP-4161        TCGA-BP-4162 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167        TCGA-CJ-4634 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-CJ-4636        TCGA-CJ-4637        TCGA-CJ-4638        TCGA-CJ-4639 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-CJ-4640        TCGA-CJ-4641        TCGA-CJ-4643        TCGA-CJ-4644 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCA4 MUTATED        1      0      1      0      0
  SMARCA4 WILD-TYPE      6     16     15     10      9
D16V2, multiclass
[1] "Remove cluster labels:" "SMARCA4 MUTATED"       
clus
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
                2                56 
       TCGA-A3-3311        TCGA-A3-3313        TCGA-A3-3317        TCGA-A3-3323 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-A3-3326        TCGA-A3-3331        TCGA-A3-3347        TCGA-A3-3349 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-A3-3362        TCGA-A3-3374        TCGA-AK-3427        TCGA-AK-3440 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3455        TCGA-AK-3456 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467        TCGA-AL-3472 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-AL-3473        TCGA-AS-3777        TCGA-B2-3923        TCGA-B2-3924 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-B2-4098        TCGA-B2-4099        TCGA-B3-3925        TCGA-B3-3926 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-B3-4103        TCGA-B3-4104        TCGA-B8-4143        TCGA-B8-4148 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4619        TCGA-B8-4620 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4115        TCGA-B9-4116 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-B9-4117        TCGA-B9-4617        TCGA-BP-4161        TCGA-BP-4162 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167        TCGA-CJ-4634 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-CJ-4636        TCGA-CJ-4637        TCGA-CJ-4638        TCGA-CJ-4639 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-CJ-4640        TCGA-CJ-4641        TCGA-CJ-4643        TCGA-CJ-4644 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED       10      2      8
  SMARCA4 WILD-TYPE    303    166    290
D16V3, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              10               303
  CLUS_2               2               166
  CLUS_3               8               290
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCA4 MUTATED        3      2      2      1      8
  SMARCA4 WILD-TYPE     92    109    140     62    177
D16V4, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               2               109
  CLUS_3               2               140
  CLUS_4               1                62
  CLUS_5               8               177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        4      3      5      6
  SMARCA4 WILD-TYPE    159    158    165    169
D16V5, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               4               159
  CLUS_2               3               158
  CLUS_3               5               165
  CLUS_4               6               169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCA4 MUTATED        7      1      4      1      2      2      1
  SMARCA4 WILD-TYPE    171     61    101    128     50     59     81
D16V6, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               7               171
  CLUS_2               1                61
  CLUS_3               4               101
  CLUS_4               1               128
  CLUS_5               2                50
  CLUS_6               2                59
  CLUS_7               1                81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        2      2      5     11
  SMARCA4 WILD-TYPE    105    177    228    251
D16V7, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               2               105
  CLUS_2               2               177
  CLUS_3               5               228
  CLUS_4              11               251
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SMARCA4 MUTATED        1      2      2      1      2      0      2      1
  SMARCA4 WILD-TYPE     83     48    120     76    105     32     88     51
                   vv
clus                CLUS_9
  SMARCA4 MUTATED        9
  SMARCA4 WILD-TYPE    158
D16V8, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               2                48
  CLUS_3               2               120
  CLUS_4               1                76
  CLUS_5               2               105
  CLUS_6               0                32
  CLUS_7               2                88
  CLUS_8               1                51
  CLUS_9               9               158
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED       12      2      5
  SMARCA4 WILD-TYPE    317    162    277
D16V9, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              12               317
  CLUS_2               2               162
  CLUS_3               5               277
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        1      6      3      9
  SMARCA4 WILD-TYPE     72    294    195    195
D16V10, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               1                72
  CLUS_2               6               294
  CLUS_3               3               195
  CLUS_4               9               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        6      1      1      1
  SMARCA4 WILD-TYPE    149     65     55     95
D16V11, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               6               149
  CLUS_2               1                65
  CLUS_3               1                55
  CLUS_4               1                95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCA4 MUTATED        5      0      1      0      1      1      1
  SMARCA4 WILD-TYPE     85     73     49     19     36     57     45
D16V12, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               5                85
  CLUS_2               0                73
  CLUS_3               1                49
  CLUS_4               0                19
  CLUS_5               1                36
  CLUS_6               1                57
  CLUS_7               1                45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = NFE2L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        0      0      0      1
  NFE2L2 WILD-TYPE     17     16     10     14
D17V1, multiclass
[1] "Remove cluster labels:" "NFE2L2 MUTATED"        
clus
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
               1               57 
      TCGA-A3-3311       TCGA-A3-3313       TCGA-A3-3317       TCGA-A3-3322 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3374       TCGA-AK-3427 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-AL-3468       TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4099       TCGA-B3-3925 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104       TCGA-B8-4143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154       TCGA-B8-4619 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114       TCGA-B9-4115 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B9-4116       TCGA-B9-4117       TCGA-B9-4617       TCGA-BP-4161 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-BP-4162       TCGA-BP-4163       TCGA-BP-4164       TCGA-BP-4167 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-CJ-4634       TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-CJ-4639       TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-CJ-4644 
"NFE2L2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L2 MUTATED        0      0      1      0      0
  NFE2L2 WILD-TYPE      7     16     15     10      9
D17V2, multiclass
[1] "Remove cluster labels:" "NFE2L2 MUTATED"        
clus
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
               1               57 
      TCGA-A3-3311       TCGA-A3-3313       TCGA-A3-3317       TCGA-A3-3322 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3374       TCGA-AK-3427 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-AL-3468       TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4099       TCGA-B3-3925 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104       TCGA-B8-4143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154       TCGA-B8-4619 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114       TCGA-B9-4115 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-B9-4116       TCGA-B9-4117       TCGA-B9-4617       TCGA-BP-4161 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-BP-4162       TCGA-BP-4163       TCGA-BP-4164       TCGA-BP-4167 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-CJ-4634       TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-CJ-4639       TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-CJ-4644 
"NFE2L2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        7      0      5
  NFE2L2 WILD-TYPE    306    168    293
D17V3, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              7              306
  CLUS_2              0              168
  CLUS_3              5              293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L2 MUTATED        1      1      0      3      4
  NFE2L2 WILD-TYPE     94    110    142     60    181
D17V4, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              1              110
  CLUS_3              0              142
  CLUS_4              3               60
  CLUS_5              4              181
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        2      2      5      3
  NFE2L2 WILD-TYPE    161    159    165    172
D17V5, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              2              161
  CLUS_2              2              159
  CLUS_3              5              165
  CLUS_4              3              172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NFE2L2 MUTATED        2      3      1      1      3      2      0
  NFE2L2 WILD-TYPE    176     59    104    128     49     59     82
D17V6, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              3               59
  CLUS_3              1              104
  CLUS_4              1              128
  CLUS_5              3               49
  CLUS_6              2               59
  CLUS_7              0               82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        1      4      1      6
  NFE2L2 WILD-TYPE    106    175    232    256
D17V7, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              1              106
  CLUS_2              4              175
  CLUS_3              1              232
  CLUS_4              6              256
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NFE2L2 MUTATED        0      1      1      3      4      0      0      0
  NFE2L2 WILD-TYPE     84     49    121     74    103     32     90     52
                  vv
clus               CLUS_9
  NFE2L2 MUTATED        3
  NFE2L2 WILD-TYPE    164
D17V8, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               49
  CLUS_3              1              121
  CLUS_4              3               74
  CLUS_5              4              103
  CLUS_6              0               32
  CLUS_7              0               90
  CLUS_8              0               52
  CLUS_9              3              164
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        7      2      3
  NFE2L2 WILD-TYPE    322    162    279
D17V9, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              7              322
  CLUS_2              2              162
  CLUS_3              3              279
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        0      4      2      6
  NFE2L2 WILD-TYPE     73    296    196    198
D17V10, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              0               73
  CLUS_2              4              296
  CLUS_3              2              196
  CLUS_4              6              198
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        4      0      1      1
  NFE2L2 WILD-TYPE    151     66     55     95
D17V11, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              4              151
  CLUS_2              0               66
  CLUS_3              1               55
  CLUS_4              1               95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NFE2L2 MUTATED        3      1      1      0      1      0      0
  NFE2L2 WILD-TYPE     87     72     49     19     36     58     46
D17V12, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              3               87
  CLUS_2              1               72
  CLUS_3              1               49
  CLUS_4              0               19
  CLUS_5              1               36
  CLUS_6              0               58
  CLUS_7              0               46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = ARID1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        0      0      0      0
  ARID1A WILD-TYPE     17     16     10     15
D18V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        0      0      0      0      0
  ARID1A WILD-TYPE      7     16     16     10      9
D18V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        6      4      8
  ARID1A WILD-TYPE    307    164    290
D18V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              6              307
  CLUS_2              4              164
  CLUS_3              8              290
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        0      4      6      1      5
  ARID1A WILD-TYPE     95    107    136     62    180
D18V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              0               95
  CLUS_2              4              107
  CLUS_3              6              136
  CLUS_4              1               62
  CLUS_5              5              180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        5      6      2      4
  ARID1A WILD-TYPE    158    155    168    171
D18V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              5              158
  CLUS_2              6              155
  CLUS_3              2              168
  CLUS_4              4              171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID1A MUTATED        4      0      3      2      3      2      3
  ARID1A WILD-TYPE    174     62    102    127     49     59     79
D18V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4              174
  CLUS_2              0               62
  CLUS_3              3              102
  CLUS_4              2              127
  CLUS_5              3               49
  CLUS_6              2               59
  CLUS_7              3               79
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        0      5      5      8
  ARID1A WILD-TYPE    107    174    228    254
D18V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              0              107
  CLUS_2              5              174
  CLUS_3              5              228
  CLUS_4              8              254
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARID1A MUTATED        0      1      2      2      3      1      3      1
  ARID1A WILD-TYPE     84     49    120     75    104     31     87     51
                  vv
clus               CLUS_9
  ARID1A MUTATED        5
  ARID1A WILD-TYPE    162
D18V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               49
  CLUS_3              2              120
  CLUS_4              2               75
  CLUS_5              3              104
  CLUS_6              1               31
  CLUS_7              3               87
  CLUS_8              1               51
  CLUS_9              5              162
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        8      2      8
  ARID1A WILD-TYPE    321    162    274
D18V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              8              321
  CLUS_2              2              162
  CLUS_3              8              274
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        0      7      5      6
  ARID1A WILD-TYPE     73    293    193    198
D18V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              0               73
  CLUS_2              7              293
  CLUS_3              5              193
  CLUS_4              6              198
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        6      0      1      3
  ARID1A WILD-TYPE    149     66     55     93
D18V11, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              6              149
  CLUS_2              0               66
  CLUS_3              1               55
  CLUS_4              3               93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID1A MUTATED        3      3      2      0      0      2      0
  ARID1A WILD-TYPE     87     70     48     19     37     56     46
D18V12, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3               87
  CLUS_2              3               70
  CLUS_3              2               48
  CLUS_4              0               19
  CLUS_5              0               37
  CLUS_6              2               56
  CLUS_7              0               46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = BCLAF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED        0      0      0      0
  BCLAF1 WILD-TYPE     17     16     10     15
D19V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCLAF1 MUTATED        0      0      0      0      0
  BCLAF1 WILD-TYPE      7     16     16     10      9
D19V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCLAF1 MUTATED        7      1      2
  BCLAF1 WILD-TYPE    306    167    296
D19V3, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              7              306
  CLUS_2              1              167
  CLUS_3              2              296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCLAF1 MUTATED        2      0      2      1      5
  BCLAF1 WILD-TYPE     93    111    140     62    180
D19V4, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0              111
  CLUS_3              2              140
  CLUS_4              1               62
  CLUS_5              5              180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED        3      2      3      1
  BCLAF1 WILD-TYPE    160    159    167    174
D19V5, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              3              160
  CLUS_2              2              159
  CLUS_3              3              167
  CLUS_4              1              174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCLAF1 MUTATED        2      0      2      2      1      1      1
  BCLAF1 WILD-TYPE    176     62    103    127     51     60     81
D19V6, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              0               62
  CLUS_3              2              103
  CLUS_4              2              127
  CLUS_5              1               51
  CLUS_6              1               60
  CLUS_7              1               81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED        3      1      1      5
  BCLAF1 WILD-TYPE    104    178    232    257
D19V7, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              3              104
  CLUS_2              1              178
  CLUS_3              1              232
  CLUS_4              5              257
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BCLAF1 MUTATED        2      1      1      1      1      0      0      0
  BCLAF1 WILD-TYPE     82     49    121     76    106     32     90     52
                  vv
clus               CLUS_9
  BCLAF1 MUTATED        4
  BCLAF1 WILD-TYPE    163
D19V8, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              1               49
  CLUS_3              1              121
  CLUS_4              1               76
  CLUS_5              1              106
  CLUS_6              0               32
  CLUS_7              0               90
  CLUS_8              0               52
  CLUS_9              4              163
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCLAF1 MUTATED        8      1      1
  BCLAF1 WILD-TYPE    321    163    281
D19V9, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              8              321
  CLUS_2              1              163
  CLUS_3              1              281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED        2      3      1      4
  BCLAF1 WILD-TYPE     71    297    197    200
D19V10, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              3              297
  CLUS_3              1              197
  CLUS_4              4              200
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED        2      3      1      1
  BCLAF1 WILD-TYPE    153     63     55     95
D19V11, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              2              153
  CLUS_2              3               63
  CLUS_3              1               55
  CLUS_4              1               95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCLAF1 MUTATED        2      2      0      0      0      1      2
  BCLAF1 WILD-TYPE     88     71     50     19     37     57     44
D19V12, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              2               88
  CLUS_2              2               71
  CLUS_3              0               50
  CLUS_4              0               19
  CLUS_5              0               37
  CLUS_6              1               57
  CLUS_7              2               44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = ATM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        1      0      0      0
  ATM WILD-TYPE     16     16     10     15
D20V1, multiclass
[1] "Remove cluster labels:" "ATM MUTATED"           
clus
  ATM MUTATED ATM WILD-TYPE 
            1            57 
   TCGA-A3-3311    TCGA-A3-3313    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A3-3374    TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AK-3455    TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AL-3468    TCGA-AL-3472    TCGA-AL-3473    TCGA-AS-3777    TCGA-B2-3923 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B2-3924    TCGA-B2-4098    TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B3-4103    TCGA-B3-4104    TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B8-4154    TCGA-B8-4619    TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B9-4115    TCGA-B9-4116    TCGA-B9-4117    TCGA-B9-4617    TCGA-BP-4161 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-BP-4162    TCGA-BP-4163    TCGA-BP-4164    TCGA-BP-4167    TCGA-CJ-4634 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-CJ-4636    TCGA-CJ-4637    TCGA-CJ-4638    TCGA-CJ-4640    TCGA-CJ-4641 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-CJ-4643    TCGA-CJ-4644 
"ATM WILD-TYPE" "ATM WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        0      0      0      1      0
  ATM WILD-TYPE      7     16     16      9      9
D20V2, multiclass
[1] "Remove cluster labels:" "ATM MUTATED"           
clus
  ATM MUTATED ATM WILD-TYPE 
            1            57 
   TCGA-A3-3311    TCGA-A3-3313    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A3-3374    TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AK-3455    TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AL-3468    TCGA-AL-3472    TCGA-AL-3473    TCGA-AS-3777    TCGA-B2-3923 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B2-3924    TCGA-B2-4098    TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B3-4103    TCGA-B3-4104    TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B8-4154    TCGA-B8-4619    TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-B9-4115    TCGA-B9-4116    TCGA-B9-4117    TCGA-B9-4617    TCGA-BP-4161 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-BP-4162    TCGA-BP-4163    TCGA-BP-4164    TCGA-BP-4167    TCGA-CJ-4634 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-CJ-4636    TCGA-CJ-4637    TCGA-CJ-4638    TCGA-CJ-4640    TCGA-CJ-4641 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-CJ-4643    TCGA-CJ-4644 
"ATM WILD-TYPE" "ATM WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        6      6      8
  ATM WILD-TYPE    307    162    290
D20V3, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           6           307
  CLUS_2           6           162
  CLUS_3           8           290
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        3      4      5      2      2
  ATM WILD-TYPE     92    107    137     61    183
D20V4, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3            92
  CLUS_2           4           107
  CLUS_3           5           137
  CLUS_4           2            61
  CLUS_5           2           183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        5      3      4      6
  ATM WILD-TYPE    158    158    166    169
D20V5, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           5           158
  CLUS_2           3           158
  CLUS_3           4           166
  CLUS_4           6           169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATM MUTATED        5      2      3      4      1      2      1
  ATM WILD-TYPE    173     60    102    125     51     59     81
D20V6, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           5           173
  CLUS_2           2            60
  CLUS_3           3           102
  CLUS_4           4           125
  CLUS_5           1            51
  CLUS_6           2            59
  CLUS_7           1            81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        3      4      9      4
  ATM WILD-TYPE    104    175    224    258
D20V7, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3           104
  CLUS_2           4           175
  CLUS_3           9           224
  CLUS_4           4           258
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ATM MUTATED        3      0      6      1      1      3      4      0      2
  ATM WILD-TYPE     81     50    116     76    106     29     86     52    165
D20V8, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3            81
  CLUS_2           0            50
  CLUS_3           6           116
  CLUS_4           1            76
  CLUS_5           1           106
  CLUS_6           3            29
  CLUS_7           4            86
  CLUS_8           0            52
  CLUS_9           2           165
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        6      3     10
  ATM WILD-TYPE    323    161    272
D20V9, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           6           323
  CLUS_2           3           161
  CLUS_3          10           272
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        3      7      7      2
  ATM WILD-TYPE     70    293    191    202
D20V10, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3            70
  CLUS_2           7           293
  CLUS_3           7           191
  CLUS_4           2           202
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        3      2      2      2
  ATM WILD-TYPE    152     64     54     94
D20V11, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3           152
  CLUS_2           2            64
  CLUS_3           2            54
  CLUS_4           2            94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATM MUTATED        1      4      1      0      0      1      2
  ATM WILD-TYPE     89     69     49     19     37     57     44
D20V12, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           1            89
  CLUS_2           4            69
  CLUS_3           1            49
  CLUS_4           0            19
  CLUS_5           0            37
  CLUS_6           1            57
  CLUS_7           2            44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = CACNA1C MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1C MUTATED        1      1      0      0
  CACNA1C WILD-TYPE     16     15     10     15
D21V1, multiclass
[1] "Remove cluster labels:" "CACNA1C MUTATED"       
clus
  CACNA1C MUTATED CACNA1C WILD-TYPE 
                2                56 
       TCGA-A3-3311        TCGA-A3-3313        TCGA-A3-3317        TCGA-A3-3322 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-A3-3323        TCGA-A3-3326        TCGA-A3-3347        TCGA-A3-3349 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-A3-3362        TCGA-A3-3374        TCGA-AK-3427        TCGA-AK-3440 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3455        TCGA-AK-3456 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467        TCGA-AL-3468 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AS-3777        TCGA-B2-3923 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4098        TCGA-B2-4099        TCGA-B3-3925 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-B3-3926        TCGA-B3-4103        TCGA-B3-4104        TCGA-B8-4143 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-B8-4148        TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4619 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-B8-4620        TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4115 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-B9-4116        TCGA-B9-4117        TCGA-B9-4617        TCGA-BP-4161 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-BP-4162        TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-CJ-4634        TCGA-CJ-4636        TCGA-CJ-4637        TCGA-CJ-4639 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-CJ-4640        TCGA-CJ-4641        TCGA-CJ-4643        TCGA-CJ-4644 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CACNA1C MUTATED        0      1      0      1      0
  CACNA1C WILD-TYPE      7     15     16      9      9
D21V2, multiclass
[1] "Remove cluster labels:" "CACNA1C MUTATED"       
clus
  CACNA1C MUTATED CACNA1C WILD-TYPE 
                2                56 
       TCGA-A3-3311        TCGA-A3-3313        TCGA-A3-3317        TCGA-A3-3322 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-A3-3323        TCGA-A3-3326        TCGA-A3-3347        TCGA-A3-3349 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-A3-3362        TCGA-A3-3374        TCGA-AK-3427        TCGA-AK-3440 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3455        TCGA-AK-3456 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467        TCGA-AL-3468 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AS-3777        TCGA-B2-3923 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4098        TCGA-B2-4099        TCGA-B3-3925 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-B3-3926        TCGA-B3-4103        TCGA-B3-4104        TCGA-B8-4143 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-B8-4148        TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4619 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-B8-4620        TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4115 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-B9-4116        TCGA-B9-4117        TCGA-B9-4617        TCGA-BP-4161 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-BP-4162        TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-CJ-4634        TCGA-CJ-4636        TCGA-CJ-4637        TCGA-CJ-4639 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
       TCGA-CJ-4640        TCGA-CJ-4641        TCGA-CJ-4643        TCGA-CJ-4644 
"CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" "CACNA1C WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CACNA1C MUTATED        4      3      8
  CACNA1C WILD-TYPE    309    165    290
D21V3, multiclass
        clus
vv       CACNA1C MUTATED CACNA1C WILD-TYPE
  CLUS_1               4               309
  CLUS_2               3               165
  CLUS_3               8               290
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CACNA1C MUTATED        3      3      2      4      1
  CACNA1C WILD-TYPE     92    108    140     59    184
D21V4, multiclass
        clus
vv       CACNA1C MUTATED CACNA1C WILD-TYPE
  CLUS_1               3                92
  CLUS_2               3               108
  CLUS_3               2               140
  CLUS_4               4                59
  CLUS_5               1               184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1C MUTATED        4      2      4      3
  CACNA1C WILD-TYPE    159    159    166    172
D21V5, multiclass
        clus
vv       CACNA1C MUTATED CACNA1C WILD-TYPE
  CLUS_1               4               159
  CLUS_2               2               159
  CLUS_3               4               166
  CLUS_4               3               172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CACNA1C MUTATED        1      1      3      3      3      0      2
  CACNA1C WILD-TYPE    177     61    102    126     49     61     80
D21V6, multiclass
        clus
vv       CACNA1C MUTATED CACNA1C WILD-TYPE
  CLUS_1               1               177
  CLUS_2               1                61
  CLUS_3               3               102
  CLUS_4               3               126
  CLUS_5               3                49
  CLUS_6               0                61
  CLUS_7               2                80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1C MUTATED        3      5      4      3
  CACNA1C WILD-TYPE    104    174    229    259
D21V7, multiclass
        clus
vv       CACNA1C MUTATED CACNA1C WILD-TYPE
  CLUS_1               3               104
  CLUS_2               5               174
  CLUS_3               4               229
  CLUS_4               3               259
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CACNA1C MUTATED        3      1      4      0      2      3      1      0
  CACNA1C WILD-TYPE     81     49    118     77    105     29     89     52
                   vv
clus                CLUS_9
  CACNA1C MUTATED        1
  CACNA1C WILD-TYPE    166
D21V8, multiclass
        clus
vv       CACNA1C MUTATED CACNA1C WILD-TYPE
  CLUS_1               3                81
  CLUS_2               1                49
  CLUS_3               4               118
  CLUS_4               0                77
  CLUS_5               2               105
  CLUS_6               3                29
  CLUS_7               1                89
  CLUS_8               0                52
  CLUS_9               1               166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CACNA1C MUTATED        4      3      8
  CACNA1C WILD-TYPE    325    161    274
D21V9, multiclass
        clus
vv       CACNA1C MUTATED CACNA1C WILD-TYPE
  CLUS_1               4               325
  CLUS_2               3               161
  CLUS_3               8               274
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1C MUTATED        3      8      3      1
  CACNA1C WILD-TYPE     70    292    195    203
D21V10, multiclass
        clus
vv       CACNA1C MUTATED CACNA1C WILD-TYPE
  CLUS_1               3                70
  CLUS_2               8               292
  CLUS_3               3               195
  CLUS_4               1               203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1C MUTATED        1      2      2      1
  CACNA1C WILD-TYPE    154     64     54     95
D21V11, multiclass
        clus
vv       CACNA1C MUTATED CACNA1C WILD-TYPE
  CLUS_1               1               154
  CLUS_2               2                64
  CLUS_3               2                54
  CLUS_4               1                95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CACNA1C MUTATED        1      2      0      0      0      1      2
  CACNA1C WILD-TYPE     89     71     50     19     37     57     44
D21V12, multiclass
        clus
vv       CACNA1C MUTATED CACNA1C WILD-TYPE
  CLUS_1               1                89
  CLUS_2               2                71
  CLUS_3               0                50
  CLUS_4               0                19
  CLUS_5               0                37
  CLUS_6               1                57
  CLUS_7               2                44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = PARD6B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARD6B MUTATED        0      0      0      0
  PARD6B WILD-TYPE     17     16     10     15
D22V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARD6B MUTATED        0      0      0      0      0
  PARD6B WILD-TYPE      7     16     16     10      9
D22V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARD6B MUTATED        3      2      3
  PARD6B WILD-TYPE    310    166    295
D22V3, multiclass
        clus
vv       PARD6B MUTATED PARD6B WILD-TYPE
  CLUS_1              3              310
  CLUS_2              2              166
  CLUS_3              3              295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARD6B MUTATED        1      0      1      1      5
  PARD6B WILD-TYPE     94    111    141     62    180
D22V4, multiclass
        clus
vv       PARD6B MUTATED PARD6B WILD-TYPE
  CLUS_1              1               94
  CLUS_2              0              111
  CLUS_3              1              141
  CLUS_4              1               62
  CLUS_5              5              180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARD6B MUTATED        0      1      5      0
  PARD6B WILD-TYPE    163    160    165    175
D22V5, multiclass
        clus
vv       PARD6B MUTATED PARD6B WILD-TYPE
  CLUS_1              0              163
  CLUS_2              1              160
  CLUS_3              5              165
  CLUS_4              0              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PARD6B MUTATED        1      3      0      0      0      2      0
  PARD6B WILD-TYPE    177     59    105    129     52     59     82
D22V6, multiclass
        clus
vv       PARD6B MUTATED PARD6B WILD-TYPE
  CLUS_1              1              177
  CLUS_2              3               59
  CLUS_3              0              105
  CLUS_4              0              129
  CLUS_5              0               52
  CLUS_6              2               59
  CLUS_7              0               82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARD6B MUTATED        1      0      1      6
  PARD6B WILD-TYPE    106    179    232    256
D22V7, multiclass
        clus
vv       PARD6B MUTATED PARD6B WILD-TYPE
  CLUS_1              1              106
  CLUS_2              0              179
  CLUS_3              1              232
  CLUS_4              6              256
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PARD6B MUTATED        0      1      0      4      0      0      0      1
  PARD6B WILD-TYPE     84     49    122     73    107     32     90     51
                  vv
clus               CLUS_9
  PARD6B MUTATED        2
  PARD6B WILD-TYPE    165
D22V8, multiclass
        clus
vv       PARD6B MUTATED PARD6B WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               49
  CLUS_3              0              122
  CLUS_4              4               73
  CLUS_5              0              107
  CLUS_6              0               32
  CLUS_7              0               90
  CLUS_8              1               51
  CLUS_9              2              165
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARD6B MUTATED        6      1      1
  PARD6B WILD-TYPE    323    163    281
D22V9, multiclass
        clus
vv       PARD6B MUTATED PARD6B WILD-TYPE
  CLUS_1              6              323
  CLUS_2              1              163
  CLUS_3              1              281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARD6B MUTATED        0      1      1      6
  PARD6B WILD-TYPE     73    299    197    198
D22V10, multiclass
        clus
vv       PARD6B MUTATED PARD6B WILD-TYPE
  CLUS_1              0               73
  CLUS_2              1              299
  CLUS_3              1              197
  CLUS_4              6              198
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARD6B MUTATED        5      0      1      1
  PARD6B WILD-TYPE    150     66     55     95
D22V11, multiclass
        clus
vv       PARD6B MUTATED PARD6B WILD-TYPE
  CLUS_1              5              150
  CLUS_2              0               66
  CLUS_3              1               55
  CLUS_4              1               95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PARD6B MUTATED        5      0      0      0      1      1      0
  PARD6B WILD-TYPE     85     73     50     19     36     57     46
D22V12, multiclass
        clus
vv       PARD6B MUTATED PARD6B WILD-TYPE
  CLUS_1              5               85
  CLUS_2              0               73
  CLUS_3              0               50
  CLUS_4              0               19
  CLUS_5              1               36
  CLUS_6              1               57
  CLUS_7              0               46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = CUL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL3 MUTATED        0      0      0      0
  CUL3 WILD-TYPE     17     16     10     15
D23V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL3 MUTATED        0      0      0      0      0
  CUL3 WILD-TYPE      7     16     16     10      9
D23V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        7      3      6
  CUL3 WILD-TYPE    306    165    292
D23V3, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            7            306
  CLUS_2            3            165
  CLUS_3            6            292
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL3 MUTATED        0      2      1      0     10
  CUL3 WILD-TYPE     95    109    141     63    175
D23V4, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            0             95
  CLUS_2            2            109
  CLUS_3            1            141
  CLUS_4            0             63
  CLUS_5           10            175
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL3 MUTATED        4      2      4      4
  CUL3 WILD-TYPE    159    159    166    171
D23V5, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            4            159
  CLUS_2            2            159
  CLUS_3            4            166
  CLUS_4            4            171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUL3 MUTATED        4      1      0      3      4      0      2
  CUL3 WILD-TYPE    174     61    105    126     48     61     80
D23V6, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            1             61
  CLUS_3            0            105
  CLUS_4            3            126
  CLUS_5            4             48
  CLUS_6            0             61
  CLUS_7            2             80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL3 MUTATED        0      2      4     10
  CUL3 WILD-TYPE    107    177    229    252
D23V7, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            0            107
  CLUS_2            2            177
  CLUS_3            4            229
  CLUS_4           10            252
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CUL3 MUTATED        0      0      5      7      1      0      0      0      3
  CUL3 WILD-TYPE     84     50    117     70    106     32     90     52    164
D23V8, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             50
  CLUS_3            5            117
  CLUS_4            7             70
  CLUS_5            1            106
  CLUS_6            0             32
  CLUS_7            0             90
  CLUS_8            0             52
  CLUS_9            3            164
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL3 MUTATED        9      2      5
  CUL3 WILD-TYPE    320    162    277
D23V9, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            9            320
  CLUS_2            2            162
  CLUS_3            5            277
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL3 MUTATED        0      5      3      8
  CUL3 WILD-TYPE     73    295    195    196
D23V10, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            0             73
  CLUS_2            5            295
  CLUS_3            3            195
  CLUS_4            8            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL3 MUTATED        7      0      1      2
  CUL3 WILD-TYPE    148     66     55     94
D23V11, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            7            148
  CLUS_2            0             66
  CLUS_3            1             55
  CLUS_4            2             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUL3 MUTATED        5      2      1      0      1      1      0
  CUL3 WILD-TYPE     85     71     49     19     36     57     46
D23V12, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            5             85
  CLUS_2            2             71
  CLUS_3            1             49
  CLUS_4            0             19
  CLUS_5            1             36
  CLUS_6            1             57
  CLUS_7            0             46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        0      0      0      0
  PIK3CA WILD-TYPE     17     16     10     15
D24V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        0      0      0      0      0
  PIK3CA WILD-TYPE      7     16     16     10      9
D24V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        4      2      9
  PIK3CA WILD-TYPE    309    166    289
D24V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              4              309
  CLUS_2              2              166
  CLUS_3              9              289
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        0      0      3      4      3
  PIK3CA WILD-TYPE     95    111    139     59    182
D24V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0               95
  CLUS_2              0              111
  CLUS_3              3              139
  CLUS_4              4               59
  CLUS_5              3              182
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        3      2      4      4
  PIK3CA WILD-TYPE    160    159    166    171
D24V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              3              160
  CLUS_2              2              159
  CLUS_3              4              166
  CLUS_4              4              171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3CA MUTATED        2      1      2      3      2      2      1
  PIK3CA WILD-TYPE    176     61    103    126     50     59     81
D24V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              2              176
  CLUS_2              1               61
  CLUS_3              2              103
  CLUS_4              3              126
  CLUS_5              2               50
  CLUS_6              2               59
  CLUS_7              1               81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        1      4      6      4
  PIK3CA WILD-TYPE    106    175    227    258
D24V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1              106
  CLUS_2              4              175
  CLUS_3              6              227
  CLUS_4              4              258
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PIK3CA MUTATED        0      1      2      2      4      1      3      0
  PIK3CA WILD-TYPE     84     49    120     75    103     31     87     52
                  vv
clus               CLUS_9
  PIK3CA MUTATED        2
  PIK3CA WILD-TYPE    165
D24V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               49
  CLUS_3              2              120
  CLUS_4              2               75
  CLUS_5              4              103
  CLUS_6              1               31
  CLUS_7              3               87
  CLUS_8              0               52
  CLUS_9              2              165
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        8      3      4
  PIK3CA WILD-TYPE    321    161    278
D24V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              8              321
  CLUS_2              3              161
  CLUS_3              4              278
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        0      9      4      2
  PIK3CA WILD-TYPE     73    291    194    202
D24V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0               73
  CLUS_2              9              291
  CLUS_3              4              194
  CLUS_4              2              202
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        2      1      1      0
  PIK3CA WILD-TYPE    153     65     55     96
D24V11, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              2              153
  CLUS_2              1               65
  CLUS_3              1               55
  CLUS_4              0               96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3CA MUTATED        2      2      0      0      0      0      0
  PIK3CA WILD-TYPE     88     71     50     19     37     58     46
D24V12, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              2               88
  CLUS_2              2               71
  CLUS_3              0               50
  CLUS_4              0               19
  CLUS_5              0               37
  CLUS_6              0               58
  CLUS_7              0               46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = SMARCB1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        1      0      0      0
  SMARCB1 WILD-TYPE     16     16     10     15
D25V1, multiclass
[1] "Remove cluster labels:" "SMARCB1 MUTATED"       
clus
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
                1                57 
       TCGA-A3-3311        TCGA-A3-3313        TCGA-A3-3317        TCGA-A3-3322 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-A3-3323        TCGA-A3-3326        TCGA-A3-3331        TCGA-A3-3347 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-A3-3349        TCGA-A3-3362        TCGA-A3-3374        TCGA-AK-3427 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-AK-3440        TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3456 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467        TCGA-AL-3468 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AS-3777        TCGA-B2-3923 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4098        TCGA-B2-4099        TCGA-B3-3925 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-B3-3926        TCGA-B3-4103        TCGA-B3-4104        TCGA-B8-4143 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-B8-4148        TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4619 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-B8-4620        TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4115 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-B9-4116        TCGA-B9-4117        TCGA-B9-4617        TCGA-BP-4161 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-BP-4162        TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-CJ-4634        TCGA-CJ-4636        TCGA-CJ-4637        TCGA-CJ-4638 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-CJ-4639        TCGA-CJ-4640        TCGA-CJ-4641        TCGA-CJ-4643 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-CJ-4644 
"SMARCB1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCB1 MUTATED        0      0      0      1      0
  SMARCB1 WILD-TYPE      7     16     16      9      9
D25V2, multiclass
[1] "Remove cluster labels:" "SMARCB1 MUTATED"       
clus
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
                1                57 
       TCGA-A3-3311        TCGA-A3-3313        TCGA-A3-3317        TCGA-A3-3322 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-A3-3323        TCGA-A3-3326        TCGA-A3-3331        TCGA-A3-3347 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-A3-3349        TCGA-A3-3362        TCGA-A3-3374        TCGA-AK-3427 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-AK-3440        TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3456 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467        TCGA-AL-3468 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AS-3777        TCGA-B2-3923 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4098        TCGA-B2-4099        TCGA-B3-3925 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-B3-3926        TCGA-B3-4103        TCGA-B3-4104        TCGA-B8-4143 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-B8-4148        TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4619 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-B8-4620        TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4115 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-B9-4116        TCGA-B9-4117        TCGA-B9-4617        TCGA-BP-4161 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-BP-4162        TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-CJ-4634        TCGA-CJ-4636        TCGA-CJ-4637        TCGA-CJ-4638 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-CJ-4639        TCGA-CJ-4640        TCGA-CJ-4641        TCGA-CJ-4643 
"SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" "SMARCB1 WILD-TYPE" 
       TCGA-CJ-4644 
"SMARCB1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        7      1      1
  SMARCB1 WILD-TYPE    306    167    297
D25V3, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               7               306
  CLUS_2               1               167
  CLUS_3               1               297
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCB1 MUTATED        2      2      1      1      2
  SMARCB1 WILD-TYPE     93    109    141     62    183
D25V4, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               2               109
  CLUS_3               1               141
  CLUS_4               1                62
  CLUS_5               2               183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        2      1      2      1
  SMARCB1 WILD-TYPE    161    160    168    174
D25V5, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2               161
  CLUS_2               1               160
  CLUS_3               2               168
  CLUS_4               1               174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCB1 MUTATED        2      1      1      0      0      1      1
  SMARCB1 WILD-TYPE    176     61    104    129     52     60     81
D25V6, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2               176
  CLUS_2               1                61
  CLUS_3               1               104
  CLUS_4               0               129
  CLUS_5               0                52
  CLUS_6               1                60
  CLUS_7               1                81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        1      1      1      6
  SMARCB1 WILD-TYPE    106    178    232    256
D25V7, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1               106
  CLUS_2               1               178
  CLUS_3               1               232
  CLUS_4               6               256
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SMARCB1 MUTATED        1      0      0      5      1      0      1      0
  SMARCB1 WILD-TYPE     83     50    122     72    106     32     89     52
                   vv
clus                CLUS_9
  SMARCB1 MUTATED        1
  SMARCB1 WILD-TYPE    166
D25V8, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                50
  CLUS_3               0               122
  CLUS_4               5                72
  CLUS_5               1               106
  CLUS_6               0                32
  CLUS_7               1                89
  CLUS_8               0                52
  CLUS_9               1               166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        6      1      2
  SMARCB1 WILD-TYPE    323    163    280
D25V9, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               6               323
  CLUS_2               1               163
  CLUS_3               2               280
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        1      3      1      4
  SMARCB1 WILD-TYPE     72    297    197    200
D25V10, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1                72
  CLUS_2               3               297
  CLUS_3               1               197
  CLUS_4               4               200
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        2      1      2      0
  SMARCB1 WILD-TYPE    153     65     54     96
D25V11, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2               153
  CLUS_2               1                65
  CLUS_3               2                54
  CLUS_4               0                96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCB1 MUTATED        0      2      1      1      0      0      1
  SMARCB1 WILD-TYPE     90     71     49     18     37     58     45
D25V12, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0                90
  CLUS_2               2                71
  CLUS_3               1                49
  CLUS_4               1                18
  CLUS_5               0                37
  CLUS_6               0                58
  CLUS_7               1                45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = PCF11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCF11 MUTATED        0      0      0      1
  PCF11 WILD-TYPE     17     16     10     14
D26V1, multiclass
[1] "Remove cluster labels:" "PCF11 MUTATED"         
clus
  PCF11 MUTATED PCF11 WILD-TYPE 
              1              57 
     TCGA-A3-3311      TCGA-A3-3313      TCGA-A3-3317      TCGA-A3-3322 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3374      TCGA-AK-3427 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-AL-3468      TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-B3-3925      TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-B8-4143      TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-B8-4619      TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-B9-4115      TCGA-B9-4116      TCGA-B9-4117      TCGA-BP-4161 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-BP-4162      TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-CJ-4634      TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-CJ-4639      TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-CJ-4644 
"PCF11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCF11 MUTATED        0      0      1      0      0
  PCF11 WILD-TYPE      7     16     15     10      9
D26V2, multiclass
[1] "Remove cluster labels:" "PCF11 MUTATED"         
clus
  PCF11 MUTATED PCF11 WILD-TYPE 
              1              57 
     TCGA-A3-3311      TCGA-A3-3313      TCGA-A3-3317      TCGA-A3-3322 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3374      TCGA-AK-3427 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-AL-3468      TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-B3-3925      TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-B8-4143      TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-B8-4619      TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-B9-4115      TCGA-B9-4116      TCGA-B9-4117      TCGA-BP-4161 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-BP-4162      TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-CJ-4634      TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-CJ-4639      TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-CJ-4644 
"PCF11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCF11 MUTATED        9      3      0
  PCF11 WILD-TYPE    304    165    298
D26V3, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             9             304
  CLUS_2             3             165
  CLUS_3             0             298
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCF11 MUTATED        1      1      2      1      7
  PCF11 WILD-TYPE     94    110    140     62    178
D26V4, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1             110
  CLUS_3             2             140
  CLUS_4             1              62
  CLUS_5             7             178
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCF11 MUTATED        1      2      4      2
  PCF11 WILD-TYPE    162    159    166    173
D26V5, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             1             162
  CLUS_2             2             159
  CLUS_3             4             166
  CLUS_4             2             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCF11 MUTATED        0      4      0      2      0      3      0
  PCF11 WILD-TYPE    178     58    105    127     52     58     82
D26V6, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             0             178
  CLUS_2             4              58
  CLUS_3             0             105
  CLUS_4             2             127
  CLUS_5             0              52
  CLUS_6             3              58
  CLUS_7             0              82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCF11 MUTATED        0      1      1     10
  PCF11 WILD-TYPE    107    178    232    252
D26V7, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             0             107
  CLUS_2             1             178
  CLUS_3             1             232
  CLUS_4            10             252
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PCF11 MUTATED        0      1      1      4      0      0      0      0
  PCF11 WILD-TYPE     84     49    121     73    107     32     90     52
                 vv
clus              CLUS_9
  PCF11 MUTATED        6
  PCF11 WILD-TYPE    161
D26V8, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              49
  CLUS_3             1             121
  CLUS_4             4              73
  CLUS_5             0             107
  CLUS_6             0              32
  CLUS_7             0              90
  CLUS_8             0              52
  CLUS_9             6             161
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCF11 MUTATED       10      3      0
  PCF11 WILD-TYPE    319    161    282
D26V9, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1            10             319
  CLUS_2             3             161
  CLUS_3             0             282
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCF11 MUTATED        0      6      1      6
  PCF11 WILD-TYPE     73    294    197    198
D26V10, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             0              73
  CLUS_2             6             294
  CLUS_3             1             197
  CLUS_4             6             198
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCF11 MUTATED        6      0      3      0
  PCF11 WILD-TYPE    149     66     53     96
D26V11, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             6             149
  CLUS_2             0              66
  CLUS_3             3              53
  CLUS_4             0              96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCF11 MUTATED        3      4      1      1      0      0      0
  PCF11 WILD-TYPE     87     69     49     18     37     58     46
D26V12, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             3              87
  CLUS_2             4              69
  CLUS_3             1              49
  CLUS_4             1              18
  CLUS_5             0              37
  CLUS_6             0              58
  CLUS_7             0              46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = WASL MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WASL MUTATED        0      0      0      0
  WASL WILD-TYPE     17     16     10     15
D27V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WASL MUTATED        0      0      0      0      0
  WASL WILD-TYPE      7     16     16     10      9
D27V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WASL MUTATED        3      2      3
  WASL WILD-TYPE    310    166    295
D27V3, multiclass
        clus
vv       WASL MUTATED WASL WILD-TYPE
  CLUS_1            3            310
  CLUS_2            2            166
  CLUS_3            3            295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WASL MUTATED        1      2      1      0      2
  WASL WILD-TYPE     94    109    141     63    183
D27V4, multiclass
        clus
vv       WASL MUTATED WASL WILD-TYPE
  CLUS_1            1             94
  CLUS_2            2            109
  CLUS_3            1            141
  CLUS_4            0             63
  CLUS_5            2            183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WASL MUTATED        1      4      1      2
  WASL WILD-TYPE    162    157    169    173
D27V5, multiclass
        clus
vv       WASL MUTATED WASL WILD-TYPE
  CLUS_1            1            162
  CLUS_2            4            157
  CLUS_3            1            169
  CLUS_4            2            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WASL MUTATED        4      0      1      1      1      0      1
  WASL WILD-TYPE    174     62    104    128     51     61     81
D27V6, multiclass
        clus
vv       WASL MUTATED WASL WILD-TYPE
  CLUS_1            4            174
  CLUS_2            0             62
  CLUS_3            1            104
  CLUS_4            1            128
  CLUS_5            1             51
  CLUS_6            0             61
  CLUS_7            1             81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WASL MUTATED        1      2      2      3
  WASL WILD-TYPE    106    177    231    259
D27V7, multiclass
        clus
vv       WASL MUTATED WASL WILD-TYPE
  CLUS_1            1            106
  CLUS_2            2            177
  CLUS_3            2            231
  CLUS_4            3            259
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  WASL MUTATED        1      0      1      0      1      1      1      0      3
  WASL WILD-TYPE     83     50    121     77    106     31     89     52    164
D27V8, multiclass
        clus
vv       WASL MUTATED WASL WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             50
  CLUS_3            1            121
  CLUS_4            0             77
  CLUS_5            1            106
  CLUS_6            1             31
  CLUS_7            1             89
  CLUS_8            0             52
  CLUS_9            3            164
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WASL MUTATED        3      2      2
  WASL WILD-TYPE    326    162    280
D27V9, multiclass
        clus
vv       WASL MUTATED WASL WILD-TYPE
  CLUS_1            3            326
  CLUS_2            2            162
  CLUS_3            2            280
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WASL MUTATED        1      3      1      2
  WASL WILD-TYPE     72    297    197    202
D27V10, multiclass
        clus
vv       WASL MUTATED WASL WILD-TYPE
  CLUS_1            1             72
  CLUS_2            3            297
  CLUS_3            1            197
  CLUS_4            2            202
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WASL MUTATED        2      1      1      2
  WASL WILD-TYPE    153     65     55     94
D27V11, multiclass
        clus
vv       WASL MUTATED WASL WILD-TYPE
  CLUS_1            2            153
  CLUS_2            1             65
  CLUS_3            1             55
  CLUS_4            2             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WASL MUTATED        2      0      0      0      2      1      1
  WASL WILD-TYPE     88     73     50     19     35     57     45
D27V12, multiclass
        clus
vv       WASL MUTATED WASL WILD-TYPE
  CLUS_1            2             88
  CLUS_2            0             73
  CLUS_3            0             50
  CLUS_4            0             19
  CLUS_5            2             35
  CLUS_6            1             57
  CLUS_7            1             45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DNMT3A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        0      0      0      0
  DNMT3A WILD-TYPE     17     16     10     15
D28V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNMT3A MUTATED        0      0      0      0      0
  DNMT3A WILD-TYPE      7     16     16     10      9
D28V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        4      4      3
  DNMT3A WILD-TYPE    309    164    295
D28V3, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              4              309
  CLUS_2              4              164
  CLUS_3              3              295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNMT3A MUTATED        0      1      3      1      4
  DNMT3A WILD-TYPE     95    110    139     62    181
D28V4, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              0               95
  CLUS_2              1              110
  CLUS_3              3              139
  CLUS_4              1               62
  CLUS_5              4              181
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        2      4      3      0
  DNMT3A WILD-TYPE    161    157    167    175
D28V5, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              2              161
  CLUS_2              4              157
  CLUS_3              3              167
  CLUS_4              0              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNMT3A MUTATED        3      0      0      2      0      3      1
  DNMT3A WILD-TYPE    175     62    105    127     52     58     81
D28V6, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              3              175
  CLUS_2              0               62
  CLUS_3              0              105
  CLUS_4              2              127
  CLUS_5              0               52
  CLUS_6              3               58
  CLUS_7              1               81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        0      1      4      6
  DNMT3A WILD-TYPE    107    178    229    256
D28V7, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              0              107
  CLUS_2              1              178
  CLUS_3              4              229
  CLUS_4              6              256
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DNMT3A MUTATED        0      1      2      0      0      0      3      0
  DNMT3A WILD-TYPE     84     49    120     77    107     32     87     52
                  vv
clus               CLUS_9
  DNMT3A MUTATED        5
  DNMT3A WILD-TYPE    162
D28V8, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               49
  CLUS_3              2              120
  CLUS_4              0               77
  CLUS_5              0              107
  CLUS_6              0               32
  CLUS_7              3               87
  CLUS_8              0               52
  CLUS_9              5              162
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        5      2      3
  DNMT3A WILD-TYPE    324    162    279
D28V9, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              5              324
  CLUS_2              2              162
  CLUS_3              3              279
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        0      3      2      5
  DNMT3A WILD-TYPE     73    297    196    199
D28V10, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              0               73
  CLUS_2              3              297
  CLUS_3              2              196
  CLUS_4              5              199
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        4      0      0      1
  DNMT3A WILD-TYPE    151     66     56     95
D28V11, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              4              151
  CLUS_2              0               66
  CLUS_3              0               56
  CLUS_4              1               95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNMT3A MUTATED        4      0      0      0      0      1      0
  DNMT3A WILD-TYPE     86     73     50     19     37     57     46
D28V12, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              4               86
  CLUS_2              0               73
  CLUS_3              0               50
  CLUS_4              0               19
  CLUS_5              0               37
  CLUS_6              1               57
  CLUS_7              0               46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = KIAA0922 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0922 MUTATED        0      0      1      0
  KIAA0922 WILD-TYPE     17     16      9     15
D29V1, multiclass
[1] "Remove cluster labels:" "KIAA0922 MUTATED"      
clus
  KIAA0922 MUTATED KIAA0922 WILD-TYPE 
                 1                 57 
        TCGA-A3-3311         TCGA-A3-3317         TCGA-A3-3322 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-A3-3323         TCGA-A3-3326         TCGA-A3-3331 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-A3-3347         TCGA-A3-3349         TCGA-A3-3362 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-A3-3374         TCGA-AK-3427         TCGA-AK-3440 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-AK-3443         TCGA-AK-3453         TCGA-AK-3455 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-AK-3456         TCGA-AK-3465         TCGA-AL-3466 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-AL-3467         TCGA-AL-3468         TCGA-AL-3472 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-AL-3473         TCGA-AS-3777         TCGA-B2-3923 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-B2-3924         TCGA-B2-4098         TCGA-B2-4099 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-B3-3925         TCGA-B3-3926         TCGA-B3-4103 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-B3-4104         TCGA-B8-4143         TCGA-B8-4148 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-B8-4151         TCGA-B8-4154         TCGA-B8-4619 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-B8-4620         TCGA-B9-4113         TCGA-B9-4114 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-B9-4115         TCGA-B9-4116         TCGA-B9-4117 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-B9-4617         TCGA-BP-4161         TCGA-BP-4162 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-BP-4163         TCGA-BP-4164         TCGA-BP-4167 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-CJ-4634         TCGA-CJ-4636         TCGA-CJ-4637 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-CJ-4638         TCGA-CJ-4639         TCGA-CJ-4640 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-CJ-4641         TCGA-CJ-4643         TCGA-CJ-4644 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0922 MUTATED        0      0      1      0      0
  KIAA0922 WILD-TYPE      7     16     15     10      9
D29V2, multiclass
[1] "Remove cluster labels:" "KIAA0922 MUTATED"      
clus
  KIAA0922 MUTATED KIAA0922 WILD-TYPE 
                 1                 57 
        TCGA-A3-3311         TCGA-A3-3317         TCGA-A3-3322 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-A3-3323         TCGA-A3-3326         TCGA-A3-3331 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-A3-3347         TCGA-A3-3349         TCGA-A3-3362 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-A3-3374         TCGA-AK-3427         TCGA-AK-3440 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-AK-3443         TCGA-AK-3453         TCGA-AK-3455 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-AK-3456         TCGA-AK-3465         TCGA-AL-3466 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-AL-3467         TCGA-AL-3468         TCGA-AL-3472 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-AL-3473         TCGA-AS-3777         TCGA-B2-3923 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-B2-3924         TCGA-B2-4098         TCGA-B2-4099 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-B3-3925         TCGA-B3-3926         TCGA-B3-4103 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-B3-4104         TCGA-B8-4143         TCGA-B8-4148 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-B8-4151         TCGA-B8-4154         TCGA-B8-4619 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-B8-4620         TCGA-B9-4113         TCGA-B9-4114 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-B9-4115         TCGA-B9-4116         TCGA-B9-4117 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-B9-4617         TCGA-BP-4161         TCGA-BP-4162 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-BP-4163         TCGA-BP-4164         TCGA-BP-4167 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-CJ-4634         TCGA-CJ-4636         TCGA-CJ-4637 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-CJ-4638         TCGA-CJ-4639         TCGA-CJ-4640 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
        TCGA-CJ-4641         TCGA-CJ-4643         TCGA-CJ-4644 
"KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" "KIAA0922 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0922 MUTATED        6      0      1
  KIAA0922 WILD-TYPE    307    168    297
D29V3, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                6                307
  CLUS_2                0                168
  CLUS_3                1                297
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0922 MUTATED        0      2      0      1      3
  KIAA0922 WILD-TYPE     95    109    142     62    182
D29V4, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                2                109
  CLUS_3                0                142
  CLUS_4                1                 62
  CLUS_5                3                182
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0922 MUTATED        2      0      1      1
  KIAA0922 WILD-TYPE    161    161    169    174
D29V5, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                2                161
  CLUS_2                0                161
  CLUS_3                1                169
  CLUS_4                1                174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0922 MUTATED        1      0      1      1      0      0      1
  KIAA0922 WILD-TYPE    177     62    104    128     52     61     81
D29V6, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                1                177
  CLUS_2                0                 62
  CLUS_3                1                104
  CLUS_4                1                128
  CLUS_5                0                 52
  CLUS_6                0                 61
  CLUS_7                1                 81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0922 MUTATED        1      1      0      5
  KIAA0922 WILD-TYPE    106    178    233    257
D29V7, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                1                106
  CLUS_2                1                178
  CLUS_3                0                233
  CLUS_4                5                257
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA0922 MUTATED        0      1      0      2      1      0      0      0
  KIAA0922 WILD-TYPE     84     49    122     75    106     32     90     52
                    vv
clus                 CLUS_9
  KIAA0922 MUTATED        3
  KIAA0922 WILD-TYPE    164
D29V8, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 49
  CLUS_3                0                122
  CLUS_4                2                 75
  CLUS_5                1                106
  CLUS_6                0                 32
  CLUS_7                0                 90
  CLUS_8                0                 52
  CLUS_9                3                164
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0922 MUTATED        4      3      0
  KIAA0922 WILD-TYPE    325    161    282
D29V9, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                4                325
  CLUS_2                3                161
  CLUS_3                0                282
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0922 MUTATED        0      4      0      3
  KIAA0922 WILD-TYPE     73    296    198    201
D29V10, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                0                 73
  CLUS_2                4                296
  CLUS_3                0                198
  CLUS_4                3                201
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0922 MUTATED        2      0      1      0
  KIAA0922 WILD-TYPE    153     66     55     96
D29V11, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                2                153
  CLUS_2                0                 66
  CLUS_3                1                 55
  CLUS_4                0                 96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0922 MUTATED        0      2      1      0      0      0      0
  KIAA0922 WILD-TYPE     90     71     49     19     37     58     46
D29V12, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                0                 90
  CLUS_2                2                 71
  CLUS_3                1                 49
  CLUS_4                0                 19
  CLUS_5                0                 37
  CLUS_6                0                 58
  CLUS_7                0                 46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = GPR50 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR50 MUTATED        0      0      0      0
  GPR50 WILD-TYPE     17     16     10     15
D30V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR50 MUTATED        0      0      0      0      0
  GPR50 WILD-TYPE      7     16     16     10      9
D30V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR50 MUTATED        1      1      3
  GPR50 WILD-TYPE    312    167    295
D30V3, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             1             312
  CLUS_2             1             167
  CLUS_3             3             295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR50 MUTATED        2      1      1      0      1
  GPR50 WILD-TYPE     93    110    141     63    184
D30V4, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1             110
  CLUS_3             1             141
  CLUS_4             0              63
  CLUS_5             1             184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR50 MUTATED        1      0      4      0
  GPR50 WILD-TYPE    162    161    166    175
D30V5, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             1             162
  CLUS_2             0             161
  CLUS_3             4             166
  CLUS_4             0             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR50 MUTATED        0      1      1      2      0      1      0
  GPR50 WILD-TYPE    178     61    104    127     52     60     82
D30V6, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             0             178
  CLUS_2             1              61
  CLUS_3             1             104
  CLUS_4             2             127
  CLUS_5             0              52
  CLUS_6             1              60
  CLUS_7             0              82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR50 MUTATED        2      1      1      1
  GPR50 WILD-TYPE    105    178    232    261
D30V7, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             2             105
  CLUS_2             1             178
  CLUS_3             1             232
  CLUS_4             1             261
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPR50 MUTATED        1      1      0      0      1      0      1      0
  GPR50 WILD-TYPE     83     49    122     77    106     32     89     52
                 vv
clus              CLUS_9
  GPR50 MUTATED        1
  GPR50 WILD-TYPE    166
D30V8, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              49
  CLUS_3             0             122
  CLUS_4             0              77
  CLUS_5             1             106
  CLUS_6             0              32
  CLUS_7             1              89
  CLUS_8             0              52
  CLUS_9             1             166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR50 MUTATED        1      2      2
  GPR50 WILD-TYPE    328    162    280
D30V9, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             1             328
  CLUS_2             2             162
  CLUS_3             2             280
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR50 MUTATED        1      2      1      1
  GPR50 WILD-TYPE     72    298    197    203
D30V10, multiclass
        clus
vv       GPR50 MUTATED GPR50 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             2             298
  CLUS_3             1             197
  CLUS_4             1             203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR50 MUTATED        1      1      0      0
  GPR50 WILD-TYPE    154     65     56     96
D30V11, multiclass
[1] "Remove cluster labels:" "GPR50 MUTATED"         
clus
  GPR50 MUTATED GPR50 WILD-TYPE 
              2             371 
     TCGA-2K-A9WE      TCGA-2Z-A9J1      TCGA-2Z-A9J2      TCGA-2Z-A9J3 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-2Z-A9J5      TCGA-2Z-A9J6      TCGA-2Z-A9JD      TCGA-2Z-A9JG 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-2Z-A9JI      TCGA-2Z-A9JJ      TCGA-2Z-A9JK      TCGA-2Z-A9JL 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-2Z-A9JM      TCGA-2Z-A9JN      TCGA-2Z-A9JO      TCGA-2Z-A9JP 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-2Z-A9JQ      TCGA-2Z-A9JR      TCGA-2Z-A9JT      TCGA-4A-A93W 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-4A-A93X      TCGA-4A-A93Y      TCGA-5P-A9JV      TCGA-5P-A9JW 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-5P-A9JY      TCGA-5P-A9JZ      TCGA-5P-A9K0      TCGA-5P-A9K6 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-5P-A9K8      TCGA-5P-A9KA      TCGA-5P-A9KC      TCGA-5P-A9KE 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-A4-A772 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-4700      TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-4852      TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-5399      TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-5694      TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-5702      TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B1-A47N      TCGA-B1-A47O      TCGA-B1-A654      TCGA-B1-A656 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-5633 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104      TCGA-B3-8121 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621      TCGA-B8-5545 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552      TCGA-B8-5553 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5155      TCGA-B9-5156 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-B9-A8YH 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B9-A8YI      TCGA-BP-4173      TCGA-BP-4340      TCGA-BP-4761 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4770      TCGA-BP-4787      TCGA-BP-4789      TCGA-BP-4790 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4804      TCGA-BP-4807      TCGA-BP-4961      TCGA-BP-4967 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4968      TCGA-BP-4970      TCGA-BP-4974      TCGA-BP-4976 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4981      TCGA-BP-4982      TCGA-BP-4985      TCGA-BP-4988 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4989      TCGA-BP-4992      TCGA-BP-4995      TCGA-BP-4998 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-5001      TCGA-BP-5008      TCGA-BP-5009      TCGA-BQ-5876 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5877      TCGA-BQ-5878      TCGA-BQ-5879      TCGA-BQ-5880 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5881      TCGA-BQ-5882      TCGA-BQ-5883      TCGA-BQ-5884 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5886      TCGA-BQ-5887      TCGA-BQ-5888      TCGA-BQ-5889 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5890      TCGA-BQ-5891      TCGA-BQ-5892      TCGA-BQ-5893 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5894      TCGA-BQ-7044      TCGA-BQ-7045      TCGA-BQ-7046 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-7048      TCGA-BQ-7049      TCGA-BQ-7050      TCGA-BQ-7051 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7056      TCGA-BQ-7058 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7836      TCGA-DW-7837 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DW-7838      TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DZ-6131      TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DZ-6135      TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-EV-5903      TCGA-F9-A4JJ      TCGA-F9-A7Q0      TCGA-F9-A8NY 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-F9-A97G      TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-G7-A8LB      TCGA-G7-A8LC 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-G7-A8LD      TCGA-G7-A8LE      TCGA-GL-6846      TCGA-GL-7773 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-GL-A9DC      TCGA-GL-A9DD      TCGA-GL-A9DE      TCGA-HE-7128 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-HE-A5NL      TCGA-IA-A40U 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IA-A83S      TCGA-IA-A83T 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-IA-A83V      TCGA-IA-A83W      TCGA-IZ-8195      TCGA-IZ-8196 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537      TCGA-J7-A8I2 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8323      TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8331      TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8335      TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8340      TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8344      TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KM-8441      TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8419      TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8426      TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8430      TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8434      TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KO-8408      TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KO-8415      TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KV-A6GE      TCGA-KV-A74V      TCGA-MH-A854      TCGA-MH-A855 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-MH-A856      TCGA-MH-A857      TCGA-O9-A75Z      TCGA-P4-A5E6 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA      TCGA-P4-AAVL 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-P4-AAVM      TCGA-PJ-A5Z8      TCGA-Q2-A5QZ      TCGA-SX-A71R 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-SX-A71S      TCGA-SX-A71U      TCGA-SX-A71W      TCGA-SX-A7SL 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-SX-A7SM      TCGA-SX-A7SN      TCGA-SX-A7SO      TCGA-SX-A7SP 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-SX-A7SR      TCGA-SX-A7SS      TCGA-SX-A7SU      TCGA-UZ-A9PJ 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-UZ-A9PK      TCGA-UZ-A9PL      TCGA-UZ-A9PN      TCGA-UZ-A9PO 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-UZ-A9PP      TCGA-UZ-A9PR      TCGA-UZ-A9PU      TCGA-UZ-A9PV 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-UZ-A9PX      TCGA-UZ-A9PZ      TCGA-V9-A7HT      TCGA-WN-A9G9 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-WN-AB4C      TCGA-Y8-A897      TCGA-Y8-A898      TCGA-Y8-A8RY 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-Y8-A8RZ      TCGA-Y8-A8S0      TCGA-Y8-A8S1 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR50 MUTATED        0      0      1      0      0      0      1
  GPR50 WILD-TYPE     90     73     49     19     37     58     45
D30V12, multiclass
[1] "Remove cluster labels:" "GPR50 MUTATED"         
clus
  GPR50 MUTATED GPR50 WILD-TYPE 
              2             371 
     TCGA-2K-A9WE      TCGA-2Z-A9J1      TCGA-2Z-A9J2      TCGA-2Z-A9J3 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-2Z-A9J5      TCGA-2Z-A9J6      TCGA-2Z-A9JD      TCGA-2Z-A9JG 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-2Z-A9JI      TCGA-2Z-A9JJ      TCGA-2Z-A9JK      TCGA-2Z-A9JL 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-2Z-A9JM      TCGA-2Z-A9JN      TCGA-2Z-A9JO      TCGA-2Z-A9JP 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-2Z-A9JQ      TCGA-2Z-A9JR      TCGA-2Z-A9JT      TCGA-4A-A93W 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-4A-A93X      TCGA-4A-A93Y      TCGA-5P-A9JV      TCGA-5P-A9JW 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-5P-A9JY      TCGA-5P-A9JZ      TCGA-5P-A9K0      TCGA-5P-A9K6 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-5P-A9K8      TCGA-5P-A9KA      TCGA-5P-A9KC      TCGA-5P-A9KE 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-A4-A772 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-4700      TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-4852      TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-5399      TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-5694      TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B0-5702      TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B1-A47N      TCGA-B1-A47O      TCGA-B1-A654      TCGA-B1-A656 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-5633 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104      TCGA-B3-8121 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621      TCGA-B8-5545 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552      TCGA-B8-5553 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5155      TCGA-B9-5156 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-B9-A8YH 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-B9-A8YI      TCGA-BP-4173      TCGA-BP-4340      TCGA-BP-4761 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4770      TCGA-BP-4787      TCGA-BP-4789      TCGA-BP-4790 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4804      TCGA-BP-4807      TCGA-BP-4961      TCGA-BP-4967 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4968      TCGA-BP-4970      TCGA-BP-4974      TCGA-BP-4976 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4981      TCGA-BP-4982      TCGA-BP-4985      TCGA-BP-4988 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-4989      TCGA-BP-4992      TCGA-BP-4995      TCGA-BP-4998 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BP-5001      TCGA-BP-5008      TCGA-BP-5009      TCGA-BQ-5876 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5877      TCGA-BQ-5878      TCGA-BQ-5879      TCGA-BQ-5880 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5881      TCGA-BQ-5882      TCGA-BQ-5883      TCGA-BQ-5884 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5886      TCGA-BQ-5887      TCGA-BQ-5888      TCGA-BQ-5889 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5890      TCGA-BQ-5891      TCGA-BQ-5892      TCGA-BQ-5893 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-5894      TCGA-BQ-7044      TCGA-BQ-7045      TCGA-BQ-7046 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-7048      TCGA-BQ-7049      TCGA-BQ-7050      TCGA-BQ-7051 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7056      TCGA-BQ-7058 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7836      TCGA-DW-7837 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DW-7838      TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DZ-6131      TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-DZ-6135      TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-EV-5903      TCGA-F9-A4JJ      TCGA-F9-A7Q0      TCGA-F9-A8NY 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-F9-A97G      TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-G7-A8LB      TCGA-G7-A8LC 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-G7-A8LD      TCGA-G7-A8LE      TCGA-GL-6846      TCGA-GL-7773 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-GL-A9DC      TCGA-GL-A9DD      TCGA-GL-A9DE      TCGA-HE-7128 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-HE-A5NL      TCGA-IA-A40U 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IA-A83S      TCGA-IA-A83T 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-IA-A83V      TCGA-IA-A83W      TCGA-IZ-8195      TCGA-IZ-8196 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537      TCGA-J7-A8I2 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8323      TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8331      TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8335      TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8340      TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KL-8344      TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KM-8441      TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8419      TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8426      TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8430      TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KN-8434      TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KO-8408      TCGA-KO-8409      TCGA-KO-8410      TCGA-KO-8413 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KO-8415      TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-KV-A6GE      TCGA-KV-A74V      TCGA-MH-A854      TCGA-MH-A855 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-MH-A856      TCGA-MH-A857      TCGA-O9-A75Z      TCGA-P4-A5E6 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA      TCGA-P4-AAVL 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-P4-AAVM      TCGA-PJ-A5Z8      TCGA-Q2-A5QZ      TCGA-SX-A71R 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-SX-A71S      TCGA-SX-A71U      TCGA-SX-A71W      TCGA-SX-A7SL 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-SX-A7SM      TCGA-SX-A7SN      TCGA-SX-A7SO      TCGA-SX-A7SP 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-SX-A7SR      TCGA-SX-A7SS      TCGA-SX-A7SU      TCGA-UZ-A9PJ 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-UZ-A9PK      TCGA-UZ-A9PL      TCGA-UZ-A9PN      TCGA-UZ-A9PO 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-UZ-A9PP      TCGA-UZ-A9PR      TCGA-UZ-A9PU      TCGA-UZ-A9PV 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-UZ-A9PX      TCGA-UZ-A9PZ      TCGA-V9-A7HT      TCGA-WN-A9G9 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-WN-AB4C      TCGA-Y8-A897      TCGA-Y8-A898      TCGA-Y8-A8RY 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 
     TCGA-Y8-A8RZ      TCGA-Y8-A8S0      TCGA-Y8-A8S1 
"GPR50 WILD-TYPE" "GPR50 WILD-TYPE" "GPR50 WILD-TYPE" 

Clustering(31) Variable = ACSF2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACSF2 MUTATED        0      0      0      0
  ACSF2 WILD-TYPE     17     16     10     15
D31V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACSF2 MUTATED        0      0      0      0      0
  ACSF2 WILD-TYPE      7     16     16     10      9
D31V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACSF2 MUTATED        5      3      3
  ACSF2 WILD-TYPE    308    165    295
D31V3, multiclass
        clus
vv       ACSF2 MUTATED ACSF2 WILD-TYPE
  CLUS_1             5             308
  CLUS_2             3             165
  CLUS_3             3             295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACSF2 MUTATED        1      2      1      1      4
  ACSF2 WILD-TYPE     94    109    141     62    181
D31V4, multiclass
        clus
vv       ACSF2 MUTATED ACSF2 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2             109
  CLUS_3             1             141
  CLUS_4             1              62
  CLUS_5             4             181
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACSF2 MUTATED        4      0      2      4
  ACSF2 WILD-TYPE    159    161    168    171
D31V5, multiclass
        clus
vv       ACSF2 MUTATED ACSF2 WILD-TYPE
  CLUS_1             4             159
  CLUS_2             0             161
  CLUS_3             2             168
  CLUS_4             4             171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACSF2 MUTATED        1      1      5      1      1      0      1
  ACSF2 WILD-TYPE    177     61    100    128     51     61     81
D31V6, multiclass
        clus
vv       ACSF2 MUTATED ACSF2 WILD-TYPE
  CLUS_1             1             177
  CLUS_2             1              61
  CLUS_3             5             100
  CLUS_4             1             128
  CLUS_5             1              51
  CLUS_6             0              61
  CLUS_7             1              81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACSF2 MUTATED        1      3      2      5
  ACSF2 WILD-TYPE    106    176    231    257
D31V7, multiclass
        clus
vv       ACSF2 MUTATED ACSF2 WILD-TYPE
  CLUS_1             1             106
  CLUS_2             3             176
  CLUS_3             2             231
  CLUS_4             5             257
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ACSF2 MUTATED        0      1      1      2      1      1      0      2
  ACSF2 WILD-TYPE     84     49    121     75    106     31     90     50
                 vv
clus              CLUS_9
  ACSF2 MUTATED        3
  ACSF2 WILD-TYPE    164
D31V8, multiclass
        clus
vv       ACSF2 MUTATED ACSF2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              49
  CLUS_3             1             121
  CLUS_4             2              75
  CLUS_5             1             106
  CLUS_6             1              31
  CLUS_7             0              90
  CLUS_8             2              50
  CLUS_9             3             164
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACSF2 MUTATED        5      3      3
  ACSF2 WILD-TYPE    324    161    279
D31V9, multiclass
        clus
vv       ACSF2 MUTATED ACSF2 WILD-TYPE
  CLUS_1             5             324
  CLUS_2             3             161
  CLUS_3             3             279
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACSF2 MUTATED        0      5      2      4
  ACSF2 WILD-TYPE     73    295    196    200
D31V10, multiclass
        clus
vv       ACSF2 MUTATED ACSF2 WILD-TYPE
  CLUS_1             0              73
  CLUS_2             5             295
  CLUS_3             2             196
  CLUS_4             4             200
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACSF2 MUTATED        3      0      0      3
  ACSF2 WILD-TYPE    152     66     56     93
D31V11, multiclass
        clus
vv       ACSF2 MUTATED ACSF2 WILD-TYPE
  CLUS_1             3             152
  CLUS_2             0              66
  CLUS_3             0              56
  CLUS_4             3              93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACSF2 MUTATED        3      0      0      0      1      2      0
  ACSF2 WILD-TYPE     87     73     50     19     36     56     46
D31V12, multiclass
        clus
vv       ACSF2 MUTATED ACSF2 WILD-TYPE
  CLUS_1             3              87
  CLUS_2             0              73
  CLUS_3             0              50
  CLUS_4             0              19
  CLUS_5             1              36
  CLUS_6             2              56
  CLUS_7             0              46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = WDR52 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR52 MUTATED        0      1      0      0
  WDR52 WILD-TYPE     17     15     10     15
D32V1, multiclass
[1] "Remove cluster labels:" "WDR52 MUTATED"         
clus
  WDR52 MUTATED WDR52 WILD-TYPE 
              1              57 
     TCGA-A3-3311      TCGA-A3-3313      TCGA-A3-3317      TCGA-A3-3322 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3374      TCGA-AK-3427 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-AL-3468      TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-B3-3925      TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-B8-4143      TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-B8-4619      TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-B9-4115      TCGA-B9-4116      TCGA-B9-4117      TCGA-B9-4617 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-BP-4161      TCGA-BP-4162      TCGA-BP-4163      TCGA-BP-4164 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-BP-4167      TCGA-CJ-4634      TCGA-CJ-4636      TCGA-CJ-4638 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-CJ-4639      TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-CJ-4644 
"WDR52 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR52 MUTATED        0      1      0      0      0
  WDR52 WILD-TYPE      7     15     16     10      9
D32V2, multiclass
[1] "Remove cluster labels:" "WDR52 MUTATED"         
clus
  WDR52 MUTATED WDR52 WILD-TYPE 
              1              57 
     TCGA-A3-3311      TCGA-A3-3313      TCGA-A3-3317      TCGA-A3-3322 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3374      TCGA-AK-3427 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-AL-3468      TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-B3-3925      TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-B8-4143      TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-B8-4619      TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-B9-4115      TCGA-B9-4116      TCGA-B9-4117      TCGA-B9-4617 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-BP-4161      TCGA-BP-4162      TCGA-BP-4163      TCGA-BP-4164 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-BP-4167      TCGA-CJ-4634      TCGA-CJ-4636      TCGA-CJ-4638 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-CJ-4639      TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643 
"WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" "WDR52 WILD-TYPE" 
     TCGA-CJ-4644 
"WDR52 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR52 MUTATED        4      2      3
  WDR52 WILD-TYPE    309    166    295
D32V3, multiclass
        clus
vv       WDR52 MUTATED WDR52 WILD-TYPE
  CLUS_1             4             309
  CLUS_2             2             166
  CLUS_3             3             295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR52 MUTATED        2      0      2      2      2
  WDR52 WILD-TYPE     93    111    140     61    183
D32V4, multiclass
        clus
vv       WDR52 MUTATED WDR52 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0             111
  CLUS_3             2             140
  CLUS_4             2              61
  CLUS_5             2             183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR52 MUTATED        1      2      2      2
  WDR52 WILD-TYPE    162    159    168    173
D32V5, multiclass
        clus
vv       WDR52 MUTATED WDR52 WILD-TYPE
  CLUS_1             1             162
  CLUS_2             2             159
  CLUS_3             2             168
  CLUS_4             2             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WDR52 MUTATED        2      1      3      1      0      0      0
  WDR52 WILD-TYPE    176     61    102    128     52     61     82
D32V6, multiclass
        clus
vv       WDR52 MUTATED WDR52 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             1              61
  CLUS_3             3             102
  CLUS_4             1             128
  CLUS_5             0              52
  CLUS_6             0              61
  CLUS_7             0              82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR52 MUTATED        2      2      2      3
  WDR52 WILD-TYPE    105    177    231    259
D32V7, multiclass
        clus
vv       WDR52 MUTATED WDR52 WILD-TYPE
  CLUS_1             2             105
  CLUS_2             2             177
  CLUS_3             2             231
  CLUS_4             3             259
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  WDR52 MUTATED        2      0      2      1      2      0      0      0
  WDR52 WILD-TYPE     82     50    120     76    105     32     90     52
                 vv
clus              CLUS_9
  WDR52 MUTATED        2
  WDR52 WILD-TYPE    165
D32V8, multiclass
        clus
vv       WDR52 MUTATED WDR52 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             0              50
  CLUS_3             2             120
  CLUS_4             1              76
  CLUS_5             2             105
  CLUS_6             0              32
  CLUS_7             0              90
  CLUS_8             0              52
  CLUS_9             2             165
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR52 MUTATED        4      3      2
  WDR52 WILD-TYPE    325    161    280
D32V9, multiclass
        clus
vv       WDR52 MUTATED WDR52 WILD-TYPE
  CLUS_1             4             325
  CLUS_2             3             161
  CLUS_3             2             280
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR52 MUTATED        2      4      1      2
  WDR52 WILD-TYPE     71    296    197    202
D32V10, multiclass
        clus
vv       WDR52 MUTATED WDR52 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             4             296
  CLUS_3             1             197
  CLUS_4             2             202
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR52 MUTATED        1      0      1      2
  WDR52 WILD-TYPE    154     66     55     94
D32V11, multiclass
        clus
vv       WDR52 MUTATED WDR52 WILD-TYPE
  CLUS_1             1             154
  CLUS_2             0              66
  CLUS_3             1              55
  CLUS_4             2              94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WDR52 MUTATED        1      1      0      0      1      1      0
  WDR52 WILD-TYPE     89     72     50     19     36     57     46
D32V12, multiclass
        clus
vv       WDR52 MUTATED WDR52 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             1              72
  CLUS_3             0              50
  CLUS_4             0              19
  CLUS_5             1              36
  CLUS_6             1              57
  CLUS_7             0              46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = ALMS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALMS1 MUTATED        0      0      0      0
  ALMS1 WILD-TYPE     17     16     10     15
D33V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALMS1 MUTATED        0      0      0      0      0
  ALMS1 WILD-TYPE      7     16     16     10      9
D33V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALMS1 MUTATED        7      4      3
  ALMS1 WILD-TYPE    306    164    295
D33V3, multiclass
        clus
vv       ALMS1 MUTATED ALMS1 WILD-TYPE
  CLUS_1             7             306
  CLUS_2             4             164
  CLUS_3             3             295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALMS1 MUTATED        1      2      4      1      4
  ALMS1 WILD-TYPE     94    109    138     62    181
D33V4, multiclass
        clus
vv       ALMS1 MUTATED ALMS1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2             109
  CLUS_3             4             138
  CLUS_4             1              62
  CLUS_5             4             181
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALMS1 MUTATED        3      2      3      5
  ALMS1 WILD-TYPE    160    159    167    170
D33V5, multiclass
        clus
vv       ALMS1 MUTATED ALMS1 WILD-TYPE
  CLUS_1             3             160
  CLUS_2             2             159
  CLUS_3             3             167
  CLUS_4             5             170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALMS1 MUTATED        3      2      2      1      3      1      1
  ALMS1 WILD-TYPE    175     60    103    128     49     60     81
D33V6, multiclass
        clus
vv       ALMS1 MUTATED ALMS1 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             2              60
  CLUS_3             2             103
  CLUS_4             1             128
  CLUS_5             3              49
  CLUS_6             1              60
  CLUS_7             1              81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALMS1 MUTATED        1      3      4      6
  ALMS1 WILD-TYPE    106    176    229    256
D33V7, multiclass
        clus
vv       ALMS1 MUTATED ALMS1 WILD-TYPE
  CLUS_1             1             106
  CLUS_2             3             176
  CLUS_3             4             229
  CLUS_4             6             256
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ALMS1 MUTATED        0      2      3      2      2      0      1      1
  ALMS1 WILD-TYPE     84     48    119     75    105     32     89     51
                 vv
clus              CLUS_9
  ALMS1 MUTATED        3
  ALMS1 WILD-TYPE    164
D33V8, multiclass
        clus
vv       ALMS1 MUTATED ALMS1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              48
  CLUS_3             3             119
  CLUS_4             2              75
  CLUS_5             2             105
  CLUS_6             0              32
  CLUS_7             1              89
  CLUS_8             1              51
  CLUS_9             3             164
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALMS1 MUTATED        7      4      2
  ALMS1 WILD-TYPE    322    160    280
D33V9, multiclass
        clus
vv       ALMS1 MUTATED ALMS1 WILD-TYPE
  CLUS_1             7             322
  CLUS_2             4             160
  CLUS_3             2             280
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALMS1 MUTATED        0      7      0      6
  ALMS1 WILD-TYPE     73    293    198    198
D33V10, multiclass
        clus
vv       ALMS1 MUTATED ALMS1 WILD-TYPE
  CLUS_1             0              73
  CLUS_2             7             293
  CLUS_3             0             198
  CLUS_4             6             198
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALMS1 MUTATED        5      0      2      1
  ALMS1 WILD-TYPE    150     66     54     95
D33V11, multiclass
        clus
vv       ALMS1 MUTATED ALMS1 WILD-TYPE
  CLUS_1             5             150
  CLUS_2             0              66
  CLUS_3             2              54
  CLUS_4             1              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALMS1 MUTATED        4      1      1      0      1      1      0
  ALMS1 WILD-TYPE     86     72     49     19     36     57     46
D33V12, multiclass
        clus
vv       ALMS1 MUTATED ALMS1 WILD-TYPE
  CLUS_1             4              86
  CLUS_2             1              72
  CLUS_3             1              49
  CLUS_4             0              19
  CLUS_5             1              36
  CLUS_6             1              57
  CLUS_7             0              46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = TXNIP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNIP MUTATED        0      0      0      0
  TXNIP WILD-TYPE     17     16     10     15
D34V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TXNIP MUTATED        0      0      0      0      0
  TXNIP WILD-TYPE      7     16     16     10      9
D34V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXNIP MUTATED        3      0      5
  TXNIP WILD-TYPE    310    168    293
D34V3, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             3             310
  CLUS_2             0             168
  CLUS_3             5             293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TXNIP MUTATED        2      3      2      1      0
  TXNIP WILD-TYPE     93    108    140     62    185
D34V4, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             2              93
  CLUS_2             3             108
  CLUS_3             2             140
  CLUS_4             1              62
  CLUS_5             0             185
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNIP MUTATED        3      0      0      4
  TXNIP WILD-TYPE    160    161    170    171
D34V5, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             3             160
  CLUS_2             0             161
  CLUS_3             0             170
  CLUS_4             4             171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TXNIP MUTATED        2      0      2      0      2      1      0
  TXNIP WILD-TYPE    176     62    103    129     50     60     82
D34V6, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             2             176
  CLUS_2             0              62
  CLUS_3             2             103
  CLUS_4             0             129
  CLUS_5             2              50
  CLUS_6             1              60
  CLUS_7             0              82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNIP MUTATED        3      2      3      0
  TXNIP WILD-TYPE    104    177    230    262
D34V7, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             3             104
  CLUS_2             2             177
  CLUS_3             3             230
  CLUS_4             0             262
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TXNIP MUTATED        1      2      2      0      1      2      0      0
  TXNIP WILD-TYPE     83     48    120     77    106     30     90     52
                 vv
clus              CLUS_9
  TXNIP MUTATED        0
  TXNIP WILD-TYPE    167
D34V8, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              48
  CLUS_3             2             120
  CLUS_4             0              77
  CLUS_5             1             106
  CLUS_6             2              30
  CLUS_7             0              90
  CLUS_8             0              52
  CLUS_9             0             167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXNIP MUTATED        2      1      5
  TXNIP WILD-TYPE    327    163    277
D34V9, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             2             327
  CLUS_2             1             163
  CLUS_3             5             277
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNIP MUTATED        0      6      2      0
  TXNIP WILD-TYPE     73    294    196    204
D34V10, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             0              73
  CLUS_2             6             294
  CLUS_3             2             196
  CLUS_4             0             204
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNIP MUTATED        0      2      1      1
  TXNIP WILD-TYPE    155     64     55     95
D34V11, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             0             155
  CLUS_2             2              64
  CLUS_3             1              55
  CLUS_4             1              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TXNIP MUTATED        0      2      0      1      0      1      0
  TXNIP WILD-TYPE     90     71     50     18     37     57     46
D34V12, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             0              90
  CLUS_2             2              71
  CLUS_3             0              50
  CLUS_4             1              18
  CLUS_5             0              37
  CLUS_6             1              57
  CLUS_7             0              46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = NUDT11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        0      0      0      0
  NUDT11 WILD-TYPE     17     16     10     15
D35V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        0      0      0      0      0
  NUDT11 WILD-TYPE      7     16     16     10      9
D35V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        2      2      1
  NUDT11 WILD-TYPE    311    166    297
D35V3, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2              311
  CLUS_2              2              166
  CLUS_3              1              297
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        0      0      3      1      1
  NUDT11 WILD-TYPE     95    111    139     62    184
D35V4, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              0              111
  CLUS_3              3              139
  CLUS_4              1               62
  CLUS_5              1              184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        0      2      1      2
  NUDT11 WILD-TYPE    163    159    169    173
D35V5, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              0              163
  CLUS_2              2              159
  CLUS_3              1              169
  CLUS_4              2              173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUDT11 MUTATED        2      0      1      1      1      0      0
  NUDT11 WILD-TYPE    176     62    104    128     51     61     82
D35V6, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              0               62
  CLUS_3              1              104
  CLUS_4              1              128
  CLUS_5              1               51
  CLUS_6              0               61
  CLUS_7              0               82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        0      2      2      1
  NUDT11 WILD-TYPE    107    177    231    261
D35V7, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              0              107
  CLUS_2              2              177
  CLUS_3              2              231
  CLUS_4              1              261
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NUDT11 MUTATED        0      0      2      0      0      1      0      1
  NUDT11 WILD-TYPE     84     50    120     77    107     31     90     51
                  vv
clus               CLUS_9
  NUDT11 MUTATED        1
  NUDT11 WILD-TYPE    166
D35V8, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               50
  CLUS_3              2              120
  CLUS_4              0               77
  CLUS_5              0              107
  CLUS_6              1               31
  CLUS_7              0               90
  CLUS_8              1               51
  CLUS_9              1              166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        1      1      3
  NUDT11 WILD-TYPE    328    163    279
D35V9, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              1              328
  CLUS_2              1              163
  CLUS_3              3              279
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        0      2      2      1
  NUDT11 WILD-TYPE     73    298    196    203
D35V10, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              0               73
  CLUS_2              2              298
  CLUS_3              2              196
  CLUS_4              1              203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        1      0      0      0
  NUDT11 WILD-TYPE    154     66     56     96
D35V11, multiclass
[1] "Remove cluster labels:" "NUDT11 MUTATED"        
clus
  NUDT11 MUTATED NUDT11 WILD-TYPE 
               1              372 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J2       TCGA-2Z-A9J3 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-2Z-A9J5       TCGA-2Z-A9J6       TCGA-2Z-A9JD       TCGA-2Z-A9JG 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JK       TCGA-2Z-A9JL 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-2Z-A9JM       TCGA-2Z-A9JN       TCGA-2Z-A9JO       TCGA-2Z-A9JP 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-2Z-A9JQ       TCGA-2Z-A9JR       TCGA-2Z-A9JT       TCGA-4A-A93W 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JV       TCGA-5P-A9JW 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9JZ       TCGA-5P-A9K0       TCGA-5P-A9K6 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-5P-A9K8       TCGA-5P-A9KA       TCGA-5P-A9KC       TCGA-5P-A9KE 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-A4-A772 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B0-4700       TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B0-4852       TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B0-5399       TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B1-A47N       TCGA-B1-A47O       TCGA-B1-A654       TCGA-B1-A656 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-5633 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104       TCGA-B3-8121 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621       TCGA-B8-5545 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5155       TCGA-B9-5156 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B9-A8YI       TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BP-4770       TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BP-4968       TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BP-4989       TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BP-5001       TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-7048       TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7836       TCGA-DW-7837 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-F9-A4JJ       TCGA-F9-A7Q0       TCGA-F9-A8NY       TCGA-F9-A97G 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC       TCGA-G7-A8LD 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-GL-A9DC 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128       TCGA-HE-7130 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-HE-A5NJ       TCGA-HE-A5NL       TCGA-IA-A40U       TCGA-IA-A40X 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IA-A83S       TCGA-IA-A83T       TCGA-IA-A83V 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-IA-A83W       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-J7-A8I2       TCGA-KL-8323 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-KV-A74V       TCGA-MH-A854       TCGA-MH-A855 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-MH-A856       TCGA-MH-A857       TCGA-O9-A75Z       TCGA-P4-A5E6 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA       TCGA-P4-AAVL 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-P4-AAVM       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-SX-A71R       TCGA-SX-A71S       TCGA-SX-A71U       TCGA-SX-A71W 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-SX-A7SL       TCGA-SX-A7SM       TCGA-SX-A7SN       TCGA-SX-A7SO 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-SX-A7SP       TCGA-SX-A7SR       TCGA-SX-A7SS       TCGA-SX-A7SU 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-UZ-A9PJ       TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PN 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-UZ-A9PO       TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PU 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-UZ-A9PV       TCGA-UZ-A9PX       TCGA-UZ-A9PZ       TCGA-V9-A7HT 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-WN-A9G9       TCGA-WN-AB4C       TCGA-Y8-A897       TCGA-Y8-A898 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-Y8-A8RY       TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUDT11 MUTATED        1      0      0      0      0      0      0
  NUDT11 WILD-TYPE     89     73     50     19     37     58     46
D35V12, multiclass
[1] "Remove cluster labels:" "NUDT11 MUTATED"        
clus
  NUDT11 MUTATED NUDT11 WILD-TYPE 
               1              372 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J2       TCGA-2Z-A9J3 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-2Z-A9J5       TCGA-2Z-A9J6       TCGA-2Z-A9JD       TCGA-2Z-A9JG 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JK       TCGA-2Z-A9JL 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-2Z-A9JM       TCGA-2Z-A9JN       TCGA-2Z-A9JO       TCGA-2Z-A9JP 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-2Z-A9JQ       TCGA-2Z-A9JR       TCGA-2Z-A9JT       TCGA-4A-A93W 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JV       TCGA-5P-A9JW 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9JZ       TCGA-5P-A9K0       TCGA-5P-A9K6 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-5P-A9K8       TCGA-5P-A9KA       TCGA-5P-A9KC       TCGA-5P-A9KE 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-A4-A772 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B0-4700       TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B0-4852       TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B0-5399       TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B1-A47N       TCGA-B1-A47O       TCGA-B1-A654       TCGA-B1-A656 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-5633 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104       TCGA-B3-8121 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621       TCGA-B8-5545 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5155       TCGA-B9-5156 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-B9-A8YI       TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BP-4770       TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BP-4968       TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BP-4989       TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BP-5001       TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-7048       TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7836       TCGA-DW-7837 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-F9-A4JJ       TCGA-F9-A7Q0       TCGA-F9-A8NY       TCGA-F9-A97G 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC       TCGA-G7-A8LD 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-GL-A9DC 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128       TCGA-HE-7130 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-HE-A5NJ       TCGA-HE-A5NL       TCGA-IA-A40U       TCGA-IA-A40X 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IA-A83S       TCGA-IA-A83T       TCGA-IA-A83V 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-IA-A83W       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-J7-A8I2       TCGA-KL-8323 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-KV-A74V       TCGA-MH-A854       TCGA-MH-A855 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-MH-A856       TCGA-MH-A857       TCGA-O9-A75Z       TCGA-P4-A5E6 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA       TCGA-P4-AAVL 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-P4-AAVM       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-SX-A71R       TCGA-SX-A71S       TCGA-SX-A71U       TCGA-SX-A71W 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-SX-A7SL       TCGA-SX-A7SM       TCGA-SX-A7SN       TCGA-SX-A7SO 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-SX-A7SP       TCGA-SX-A7SR       TCGA-SX-A7SS       TCGA-SX-A7SU 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-UZ-A9PJ       TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PN 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-UZ-A9PO       TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PU 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-UZ-A9PV       TCGA-UZ-A9PX       TCGA-UZ-A9PZ       TCGA-V9-A7HT 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-WN-A9G9       TCGA-WN-AB4C       TCGA-Y8-A897       TCGA-Y8-A898 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 
      TCGA-Y8-A8RY       TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" "NUDT11 WILD-TYPE" 

Clustering(36) Variable = PCK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCK1 MUTATED        1      0      0      1
  PCK1 WILD-TYPE     16     16     10     14
D36V1, multiclass
[1] "Remove cluster labels:" "PCK1 MUTATED"          
clus
  PCK1 MUTATED PCK1 WILD-TYPE 
             2             56 
    TCGA-A3-3311     TCGA-A3-3313     TCGA-A3-3317     TCGA-A3-3322 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3331     TCGA-A3-3347     TCGA-A3-3349 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A3-3362     TCGA-A3-3374     TCGA-AK-3427     TCGA-AK-3440 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455     TCGA-AK-3456 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3468 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AL-3473     TCGA-AS-3777     TCGA-B2-3923     TCGA-B2-3924 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925     TCGA-B3-3926 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B3-4103     TCGA-B3-4104     TCGA-B8-4143     TCGA-B8-4148 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619     TCGA-B8-4620 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115     TCGA-B9-4116 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B9-4117     TCGA-B9-4617     TCGA-BP-4161     TCGA-BP-4162 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCK1 MUTATED        1      0      1      0      0
  PCK1 WILD-TYPE      6     16     15     10      9
D36V2, multiclass
[1] "Remove cluster labels:" "PCK1 MUTATED"          
clus
  PCK1 MUTATED PCK1 WILD-TYPE 
             2             56 
    TCGA-A3-3311     TCGA-A3-3313     TCGA-A3-3317     TCGA-A3-3322 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3331     TCGA-A3-3347     TCGA-A3-3349 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-A3-3362     TCGA-A3-3374     TCGA-AK-3427     TCGA-AK-3440 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455     TCGA-AK-3456 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3468 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-AL-3473     TCGA-AS-3777     TCGA-B2-3923     TCGA-B2-3924 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925     TCGA-B3-3926 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B3-4103     TCGA-B3-4104     TCGA-B8-4143     TCGA-B8-4148 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619     TCGA-B8-4620 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115     TCGA-B9-4116 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-B9-4117     TCGA-B9-4617     TCGA-BP-4161     TCGA-BP-4162 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCK1 MUTATED        5      1      3
  PCK1 WILD-TYPE    308    167    295
D36V3, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            5            308
  CLUS_2            1            167
  CLUS_3            3            295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCK1 MUTATED        0      1      1      0      4
  PCK1 WILD-TYPE     95    110    141     63    181
D36V4, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            0             95
  CLUS_2            1            110
  CLUS_3            1            141
  CLUS_4            0             63
  CLUS_5            4            181
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCK1 MUTATED        1      3      1      2
  PCK1 WILD-TYPE    162    158    169    173
D36V5, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            1            162
  CLUS_2            3            158
  CLUS_3            1            169
  CLUS_4            2            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCK1 MUTATED        4      0      0      1      0      1      1
  PCK1 WILD-TYPE    174     62    105    128     52     60     81
D36V6, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            0             62
  CLUS_3            0            105
  CLUS_4            1            128
  CLUS_5            0             52
  CLUS_6            1             60
  CLUS_7            1             81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCK1 MUTATED        0      1      3      5
  PCK1 WILD-TYPE    107    178    230    257
D36V7, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            0            107
  CLUS_2            1            178
  CLUS_3            3            230
  CLUS_4            5            257
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PCK1 MUTATED        0      0      1      0      1      0      2      0      5
  PCK1 WILD-TYPE     84     50    121     77    106     32     88     52    162
D36V8, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             50
  CLUS_3            1            121
  CLUS_4            0             77
  CLUS_5            1            106
  CLUS_6            0             32
  CLUS_7            2             88
  CLUS_8            0             52
  CLUS_9            5            162
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCK1 MUTATED        5      1      3
  PCK1 WILD-TYPE    324    163    279
D36V9, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            5            324
  CLUS_2            1            163
  CLUS_3            3            279
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCK1 MUTATED        0      1      3      5
  PCK1 WILD-TYPE     73    299    195    199
D36V10, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            0             73
  CLUS_2            1            299
  CLUS_3            3            195
  CLUS_4            5            199
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCK1 MUTATED        4      0      0      0
  PCK1 WILD-TYPE    151     66     56     96
D36V11, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            4            151
  CLUS_2            0             66
  CLUS_3            0             56
  CLUS_4            0             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCK1 MUTATED        3      0      1      0      0      0      0
  PCK1 WILD-TYPE     87     73     49     19     37     58     46
D36V12, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            3             87
  CLUS_2            0             73
  CLUS_3            1             49
  CLUS_4            0             19
  CLUS_5            0             37
  CLUS_6            0             58
  CLUS_7            0             46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = RAI1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAI1 MUTATED        0      0      0      0
  RAI1 WILD-TYPE     17     16     10     15
D37V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI1 MUTATED        0      0      0      0      0
  RAI1 WILD-TYPE      7     16     16     10      9
D37V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAI1 MUTATED        8      0      3
  RAI1 WILD-TYPE    305    168    295
D37V3, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            8            305
  CLUS_2            0            168
  CLUS_3            3            295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI1 MUTATED        1      1      3      0      5
  RAI1 WILD-TYPE     94    110    139     63    180
D37V4, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1            110
  CLUS_3            3            139
  CLUS_4            0             63
  CLUS_5            5            180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAI1 MUTATED        0      2      4      2
  RAI1 WILD-TYPE    163    159    166    173
D37V5, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            0            163
  CLUS_2            2            159
  CLUS_3            4            166
  CLUS_4            2            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAI1 MUTATED        2      2      1      2      0      1      0
  RAI1 WILD-TYPE    176     60    104    127     52     60     82
D37V6, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            2            176
  CLUS_2            2             60
  CLUS_3            1            104
  CLUS_4            2            127
  CLUS_5            0             52
  CLUS_6            1             60
  CLUS_7            0             82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAI1 MUTATED        1      1      4      5
  RAI1 WILD-TYPE    106    178    229    257
D37V7, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            1            106
  CLUS_2            1            178
  CLUS_3            4            229
  CLUS_4            5            257
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RAI1 MUTATED        1      1      0      1      0      0      2      2      4
  RAI1 WILD-TYPE     83     49    122     76    107     32     88     50    163
D37V8, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             49
  CLUS_3            0            122
  CLUS_4            1             76
  CLUS_5            0            107
  CLUS_6            0             32
  CLUS_7            2             88
  CLUS_8            2             50
  CLUS_9            4            163
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAI1 MUTATED        6      3      2
  RAI1 WILD-TYPE    323    161    280
D37V9, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            6            323
  CLUS_2            3            161
  CLUS_3            2            280
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAI1 MUTATED        1      3      2      5
  RAI1 WILD-TYPE     72    297    196    199
D37V10, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            1             72
  CLUS_2            3            297
  CLUS_3            2            196
  CLUS_4            5            199
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAI1 MUTATED        4      1      2      0
  RAI1 WILD-TYPE    151     65     54     96
D37V11, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            4            151
  CLUS_2            1             65
  CLUS_3            2             54
  CLUS_4            0             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAI1 MUTATED        2      1      1      0      2      0      1
  RAI1 WILD-TYPE     88     72     49     19     35     58     45
D37V12, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            2             88
  CLUS_2            1             72
  CLUS_3            1             49
  CLUS_4            0             19
  CLUS_5            2             35
  CLUS_6            0             58
  CLUS_7            1             45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = PAM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAM MUTATED        0      0      0      0
  PAM WILD-TYPE     17     16     10     15
D38V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAM MUTATED        0      0      0      0      0
  PAM WILD-TYPE      7     16     16     10      9
D38V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PAM MUTATED        3      0      0
  PAM WILD-TYPE    310    168    298
D38V3, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           3           310
  CLUS_2           0           168
  CLUS_3           0           298
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAM MUTATED        0      0      0      0      4
  PAM WILD-TYPE     95    111    142     63    181
D38V4, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           0            95
  CLUS_2           0           111
  CLUS_3           0           142
  CLUS_4           0            63
  CLUS_5           4           181
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAM MUTATED        3      0      0      1
  PAM WILD-TYPE    160    161    170    174
D38V5, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           3           160
  CLUS_2           0           161
  CLUS_3           0           170
  CLUS_4           1           174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAM MUTATED        1      0      0      0      2      0      1
  PAM WILD-TYPE    177     62    105    129     50     61     81
D38V6, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           1           177
  CLUS_2           0            62
  CLUS_3           0           105
  CLUS_4           0           129
  CLUS_5           2            50
  CLUS_6           0            61
  CLUS_7           1            81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAM MUTATED        0      0      0      4
  PAM WILD-TYPE    107    179    233    258
D38V7, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           0           107
  CLUS_2           0           179
  CLUS_3           0           233
  CLUS_4           4           258
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PAM MUTATED        0      0      0      1      0      0      0      0      3
  PAM WILD-TYPE     84     50    122     76    107     32     90     52    164
D38V8, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           0            84
  CLUS_2           0            50
  CLUS_3           0           122
  CLUS_4           1            76
  CLUS_5           0           107
  CLUS_6           0            32
  CLUS_7           0            90
  CLUS_8           0            52
  CLUS_9           3           164
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PAM MUTATED        4      0      0
  PAM WILD-TYPE    325    164    282
D38V9, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           4           325
  CLUS_2           0           164
  CLUS_3           0           282
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAM MUTATED        0      0      0      4
  PAM WILD-TYPE     73    300    198    200
D38V10, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           0            73
  CLUS_2           0           300
  CLUS_3           0           198
  CLUS_4           4           200
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAM MUTATED        2      0      0      0
  PAM WILD-TYPE    153     66     56     96
D38V11, multiclass
[1] "Remove cluster labels:" "PAM MUTATED"           
clus
  PAM MUTATED PAM WILD-TYPE 
            2           371 
   TCGA-2K-A9WE    TCGA-2Z-A9J1    TCGA-2Z-A9J2    TCGA-2Z-A9J3    TCGA-2Z-A9J5 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-2Z-A9J6    TCGA-2Z-A9JD    TCGA-2Z-A9JG    TCGA-2Z-A9JI    TCGA-2Z-A9JJ 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-2Z-A9JK    TCGA-2Z-A9JL    TCGA-2Z-A9JM    TCGA-2Z-A9JN    TCGA-2Z-A9JO 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-2Z-A9JP    TCGA-2Z-A9JQ    TCGA-2Z-A9JR    TCGA-2Z-A9JT    TCGA-4A-A93W 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-4A-A93X    TCGA-4A-A93Y    TCGA-5P-A9JV    TCGA-5P-A9JW    TCGA-5P-A9JY 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-5P-A9JZ    TCGA-5P-A9K0    TCGA-5P-A9K6    TCGA-5P-A9K8    TCGA-5P-A9KA 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-5P-A9KC    TCGA-5P-A9KE    TCGA-A3-3317    TCGA-A3-3358    TCGA-A3-3387 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-7286    TCGA-A4-7287    TCGA-A4-7288    TCGA-A4-7585    TCGA-A4-7734 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-7828    TCGA-A4-7915    TCGA-A4-7996    TCGA-A4-7997    TCGA-A4-8098 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-8310    TCGA-A4-8312    TCGA-A4-8515    TCGA-A4-8517    TCGA-A4-8518 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-8630    TCGA-A4-A57E    TCGA-A4-A5XZ    TCGA-A4-A5Y0    TCGA-A4-A5Y1 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-A772    TCGA-AK-3440    TCGA-AK-3458    TCGA-AK-3465    TCGA-AL-3466 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-AL-3472    TCGA-AL-3473    TCGA-AL-7173    TCGA-AT-A5NU    TCGA-B0-4700 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-4706    TCGA-B0-4710    TCGA-B0-4712    TCGA-B0-4810    TCGA-B0-4811 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-4836    TCGA-B0-4837    TCGA-B0-4852    TCGA-B0-5080    TCGA-B0-5085 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-5088    TCGA-B0-5399    TCGA-B0-5691    TCGA-B0-5692    TCGA-B0-5693 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-5694    TCGA-B0-5695    TCGA-B0-5696    TCGA-B0-5699    TCGA-B0-5702 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-5705    TCGA-B0-5709    TCGA-B1-5398    TCGA-B1-A47N    TCGA-B1-A47O 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B1-A654    TCGA-B1-A656    TCGA-B1-A657    TCGA-B2-3923    TCGA-B2-3924 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B2-5633    TCGA-B2-5635    TCGA-B3-3925    TCGA-B3-4104    TCGA-B3-8121 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B4-5377    TCGA-B4-5836    TCGA-B8-4621    TCGA-B8-5545    TCGA-B8-5550 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B8-5551    TCGA-B8-5552    TCGA-B8-5553    TCGA-B9-4115    TCGA-B9-4117 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B9-5155    TCGA-B9-5156    TCGA-B9-A44B    TCGA-B9-A5W9    TCGA-B9-A69E 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B9-A8YH    TCGA-B9-A8YI    TCGA-BP-4173    TCGA-BP-4340    TCGA-BP-4761 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4770    TCGA-BP-4787    TCGA-BP-4789    TCGA-BP-4790    TCGA-BP-4804 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4807    TCGA-BP-4961    TCGA-BP-4967    TCGA-BP-4968    TCGA-BP-4970 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4974    TCGA-BP-4976    TCGA-BP-4981    TCGA-BP-4982    TCGA-BP-4985 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4988    TCGA-BP-4989    TCGA-BP-4992    TCGA-BP-4995    TCGA-BP-4998 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-5001    TCGA-BP-5008    TCGA-BP-5009    TCGA-BQ-5876    TCGA-BQ-5877 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-5878    TCGA-BQ-5879    TCGA-BQ-5880    TCGA-BQ-5881    TCGA-BQ-5882 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-5883    TCGA-BQ-5884    TCGA-BQ-5886    TCGA-BQ-5887    TCGA-BQ-5888 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-5889    TCGA-BQ-5890    TCGA-BQ-5891    TCGA-BQ-5892    TCGA-BQ-5893 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-5894    TCGA-BQ-7044    TCGA-BQ-7045    TCGA-BQ-7046    TCGA-BQ-7048 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-7049    TCGA-BQ-7050    TCGA-BQ-7051    TCGA-BQ-7053    TCGA-BQ-7055 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-7056    TCGA-BQ-7058    TCGA-BQ-7059    TCGA-BQ-7060    TCGA-BQ-7061 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-7062    TCGA-CJ-4870    TCGA-CJ-4875    TCGA-CJ-4876    TCGA-CJ-4878 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CJ-4881    TCGA-CJ-4887    TCGA-CJ-4889    TCGA-CJ-4890    TCGA-CJ-4895 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CJ-4900    TCGA-CJ-5671    TCGA-CJ-5675    TCGA-CJ-5676    TCGA-CJ-5681 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CJ-5683    TCGA-CJ-5686    TCGA-CJ-6031    TCGA-CJ-6032    TCGA-CW-5585 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CW-5589    TCGA-CW-6087    TCGA-CZ-4854    TCGA-CZ-4857    TCGA-CZ-4858 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CZ-5453    TCGA-CZ-5454    TCGA-CZ-5455    TCGA-CZ-5457    TCGA-CZ-5459 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CZ-5462    TCGA-CZ-5463    TCGA-CZ-5466    TCGA-CZ-5467    TCGA-CZ-5469 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CZ-5470    TCGA-CZ-5989    TCGA-DV-5565    TCGA-DV-5566    TCGA-DV-5569 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-DW-5560    TCGA-DW-5561    TCGA-DW-7834    TCGA-DW-7836    TCGA-DW-7837 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-DW-7838    TCGA-DW-7839    TCGA-DW-7840    TCGA-DW-7842    TCGA-DZ-6131 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-DZ-6132    TCGA-DZ-6133    TCGA-DZ-6134    TCGA-DZ-6135    TCGA-EU-5904 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-EV-5901    TCGA-EV-5902    TCGA-EV-5903    TCGA-F9-A4JJ    TCGA-F9-A7Q0 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-F9-A8NY    TCGA-F9-A97G    TCGA-G7-6789    TCGA-G7-6790    TCGA-G7-6792 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-G7-6793    TCGA-G7-6795    TCGA-G7-6796    TCGA-G7-7501    TCGA-G7-7502 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-G7-A4TM    TCGA-G7-A8LB    TCGA-G7-A8LC    TCGA-G7-A8LD    TCGA-G7-A8LE 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-GL-6846    TCGA-GL-7773    TCGA-GL-7966    TCGA-GL-8500    TCGA-GL-A4EM 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-GL-A59T    TCGA-GL-A9DC    TCGA-GL-A9DD    TCGA-GL-A9DE    TCGA-HE-7128 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-HE-7130    TCGA-HE-A5NJ    TCGA-HE-A5NL    TCGA-IA-A40X    TCGA-IA-A40Y 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-IA-A83S    TCGA-IA-A83T    TCGA-IA-A83V    TCGA-IA-A83W    TCGA-IZ-8195 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-IZ-8196    TCGA-IZ-A6M9    TCGA-J7-6720    TCGA-J7-8537    TCGA-J7-A8I2 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8323    TCGA-KL-8324    TCGA-KL-8327    TCGA-KL-8328    TCGA-KL-8331 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8332    TCGA-KL-8333    TCGA-KL-8334    TCGA-KL-8335    TCGA-KL-8336 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8338    TCGA-KL-8339    TCGA-KL-8340    TCGA-KL-8341    TCGA-KL-8342 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8343    TCGA-KL-8344    TCGA-KL-8345    TCGA-KM-8438    TCGA-KM-8439 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KM-8441    TCGA-KM-8442    TCGA-KM-8639    TCGA-KN-8418    TCGA-KN-8419 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KN-8422    TCGA-KN-8423    TCGA-KN-8424    TCGA-KN-8426    TCGA-KN-8427 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KN-8428    TCGA-KN-8429    TCGA-KN-8430    TCGA-KN-8431    TCGA-KN-8432 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KN-8433    TCGA-KN-8434    TCGA-KN-8436    TCGA-KN-8437    TCGA-KO-8404 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KO-8405    TCGA-KO-8408    TCGA-KO-8409    TCGA-KO-8410    TCGA-KO-8413 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KO-8415    TCGA-KO-8416    TCGA-KO-8417    TCGA-KV-A6GD    TCGA-KV-A6GE 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KV-A74V    TCGA-MH-A854    TCGA-MH-A855    TCGA-MH-A856    TCGA-MH-A857 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-O9-A75Z    TCGA-P4-A5E7    TCGA-P4-A5E8    TCGA-P4-A5EA    TCGA-P4-AAVL 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-P4-AAVM    TCGA-PJ-A5Z8    TCGA-PJ-A5Z9    TCGA-Q2-A5QZ    TCGA-SX-A71R 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-SX-A71S    TCGA-SX-A71U    TCGA-SX-A71W    TCGA-SX-A7SL    TCGA-SX-A7SM 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-SX-A7SN    TCGA-SX-A7SO    TCGA-SX-A7SP    TCGA-SX-A7SR    TCGA-SX-A7SS 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-SX-A7SU    TCGA-UZ-A9PJ    TCGA-UZ-A9PK    TCGA-UZ-A9PL    TCGA-UZ-A9PN 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-UZ-A9PO    TCGA-UZ-A9PP    TCGA-UZ-A9PR    TCGA-UZ-A9PU    TCGA-UZ-A9PV 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-UZ-A9PX    TCGA-UZ-A9PZ    TCGA-V9-A7HT    TCGA-WN-A9G9    TCGA-WN-AB4C 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-Y8-A897    TCGA-Y8-A898    TCGA-Y8-A8RY    TCGA-Y8-A8RZ    TCGA-Y8-A8S0 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-Y8-A8S1 
"PAM WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAM MUTATED        2      0      0      0      0      0      0
  PAM WILD-TYPE     88     73     50     19     37     58     46
D38V12, multiclass
[1] "Remove cluster labels:" "PAM MUTATED"           
clus
  PAM MUTATED PAM WILD-TYPE 
            2           371 
   TCGA-2K-A9WE    TCGA-2Z-A9J1    TCGA-2Z-A9J2    TCGA-2Z-A9J3    TCGA-2Z-A9J5 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-2Z-A9J6    TCGA-2Z-A9JD    TCGA-2Z-A9JG    TCGA-2Z-A9JI    TCGA-2Z-A9JJ 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-2Z-A9JK    TCGA-2Z-A9JL    TCGA-2Z-A9JM    TCGA-2Z-A9JN    TCGA-2Z-A9JO 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-2Z-A9JP    TCGA-2Z-A9JQ    TCGA-2Z-A9JR    TCGA-2Z-A9JT    TCGA-4A-A93W 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-4A-A93X    TCGA-4A-A93Y    TCGA-5P-A9JV    TCGA-5P-A9JW    TCGA-5P-A9JY 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-5P-A9JZ    TCGA-5P-A9K0    TCGA-5P-A9K6    TCGA-5P-A9K8    TCGA-5P-A9KA 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-5P-A9KC    TCGA-5P-A9KE    TCGA-A3-3317    TCGA-A3-3358    TCGA-A3-3387 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-7286    TCGA-A4-7287    TCGA-A4-7288    TCGA-A4-7585    TCGA-A4-7734 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-7828    TCGA-A4-7915    TCGA-A4-7996    TCGA-A4-7997    TCGA-A4-8098 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-8310    TCGA-A4-8312    TCGA-A4-8515    TCGA-A4-8517    TCGA-A4-8518 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-8630    TCGA-A4-A57E    TCGA-A4-A5XZ    TCGA-A4-A5Y0    TCGA-A4-A5Y1 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-A4-A772    TCGA-AK-3440    TCGA-AK-3458    TCGA-AK-3465    TCGA-AL-3466 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-AL-3472    TCGA-AL-3473    TCGA-AL-7173    TCGA-AT-A5NU    TCGA-B0-4700 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-4706    TCGA-B0-4710    TCGA-B0-4712    TCGA-B0-4810    TCGA-B0-4811 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-4836    TCGA-B0-4837    TCGA-B0-4852    TCGA-B0-5080    TCGA-B0-5085 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-5088    TCGA-B0-5399    TCGA-B0-5691    TCGA-B0-5692    TCGA-B0-5693 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-5694    TCGA-B0-5695    TCGA-B0-5696    TCGA-B0-5699    TCGA-B0-5702 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B0-5705    TCGA-B0-5709    TCGA-B1-5398    TCGA-B1-A47N    TCGA-B1-A47O 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B1-A654    TCGA-B1-A656    TCGA-B1-A657    TCGA-B2-3923    TCGA-B2-3924 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B2-5633    TCGA-B2-5635    TCGA-B3-3925    TCGA-B3-4104    TCGA-B3-8121 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B4-5377    TCGA-B4-5836    TCGA-B8-4621    TCGA-B8-5545    TCGA-B8-5550 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B8-5551    TCGA-B8-5552    TCGA-B8-5553    TCGA-B9-4115    TCGA-B9-4117 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B9-5155    TCGA-B9-5156    TCGA-B9-A44B    TCGA-B9-A5W9    TCGA-B9-A69E 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-B9-A8YH    TCGA-B9-A8YI    TCGA-BP-4173    TCGA-BP-4340    TCGA-BP-4761 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4770    TCGA-BP-4787    TCGA-BP-4789    TCGA-BP-4790    TCGA-BP-4804 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4807    TCGA-BP-4961    TCGA-BP-4967    TCGA-BP-4968    TCGA-BP-4970 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4974    TCGA-BP-4976    TCGA-BP-4981    TCGA-BP-4982    TCGA-BP-4985 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-4988    TCGA-BP-4989    TCGA-BP-4992    TCGA-BP-4995    TCGA-BP-4998 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BP-5001    TCGA-BP-5008    TCGA-BP-5009    TCGA-BQ-5876    TCGA-BQ-5877 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-5878    TCGA-BQ-5879    TCGA-BQ-5880    TCGA-BQ-5881    TCGA-BQ-5882 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-5883    TCGA-BQ-5884    TCGA-BQ-5886    TCGA-BQ-5887    TCGA-BQ-5888 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-5889    TCGA-BQ-5890    TCGA-BQ-5891    TCGA-BQ-5892    TCGA-BQ-5893 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-5894    TCGA-BQ-7044    TCGA-BQ-7045    TCGA-BQ-7046    TCGA-BQ-7048 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-7049    TCGA-BQ-7050    TCGA-BQ-7051    TCGA-BQ-7053    TCGA-BQ-7055 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-7056    TCGA-BQ-7058    TCGA-BQ-7059    TCGA-BQ-7060    TCGA-BQ-7061 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-BQ-7062    TCGA-CJ-4870    TCGA-CJ-4875    TCGA-CJ-4876    TCGA-CJ-4878 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CJ-4881    TCGA-CJ-4887    TCGA-CJ-4889    TCGA-CJ-4890    TCGA-CJ-4895 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CJ-4900    TCGA-CJ-5671    TCGA-CJ-5675    TCGA-CJ-5676    TCGA-CJ-5681 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CJ-5683    TCGA-CJ-5686    TCGA-CJ-6031    TCGA-CJ-6032    TCGA-CW-5585 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CW-5589    TCGA-CW-6087    TCGA-CZ-4854    TCGA-CZ-4857    TCGA-CZ-4858 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CZ-5453    TCGA-CZ-5454    TCGA-CZ-5455    TCGA-CZ-5457    TCGA-CZ-5459 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CZ-5462    TCGA-CZ-5463    TCGA-CZ-5466    TCGA-CZ-5467    TCGA-CZ-5469 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-CZ-5470    TCGA-CZ-5989    TCGA-DV-5565    TCGA-DV-5566    TCGA-DV-5569 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-DW-5560    TCGA-DW-5561    TCGA-DW-7834    TCGA-DW-7836    TCGA-DW-7837 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-DW-7838    TCGA-DW-7839    TCGA-DW-7840    TCGA-DW-7842    TCGA-DZ-6131 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-DZ-6132    TCGA-DZ-6133    TCGA-DZ-6134    TCGA-DZ-6135    TCGA-EU-5904 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-EV-5901    TCGA-EV-5902    TCGA-EV-5903    TCGA-F9-A4JJ    TCGA-F9-A7Q0 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-F9-A8NY    TCGA-F9-A97G    TCGA-G7-6789    TCGA-G7-6790    TCGA-G7-6792 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-G7-6793    TCGA-G7-6795    TCGA-G7-6796    TCGA-G7-7501    TCGA-G7-7502 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-G7-A4TM    TCGA-G7-A8LB    TCGA-G7-A8LC    TCGA-G7-A8LD    TCGA-G7-A8LE 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-GL-6846    TCGA-GL-7773    TCGA-GL-7966    TCGA-GL-8500    TCGA-GL-A4EM 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-GL-A59T    TCGA-GL-A9DC    TCGA-GL-A9DD    TCGA-GL-A9DE    TCGA-HE-7128 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-HE-7130    TCGA-HE-A5NJ    TCGA-HE-A5NL    TCGA-IA-A40X    TCGA-IA-A40Y 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-IA-A83S    TCGA-IA-A83T    TCGA-IA-A83V    TCGA-IA-A83W    TCGA-IZ-8195 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-IZ-8196    TCGA-IZ-A6M9    TCGA-J7-6720    TCGA-J7-8537    TCGA-J7-A8I2 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8323    TCGA-KL-8324    TCGA-KL-8327    TCGA-KL-8328    TCGA-KL-8331 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8332    TCGA-KL-8333    TCGA-KL-8334    TCGA-KL-8335    TCGA-KL-8336 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8338    TCGA-KL-8339    TCGA-KL-8340    TCGA-KL-8341    TCGA-KL-8342 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KL-8343    TCGA-KL-8344    TCGA-KL-8345    TCGA-KM-8438    TCGA-KM-8439 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KM-8441    TCGA-KM-8442    TCGA-KM-8639    TCGA-KN-8418    TCGA-KN-8419 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KN-8422    TCGA-KN-8423    TCGA-KN-8424    TCGA-KN-8426    TCGA-KN-8427 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KN-8428    TCGA-KN-8429    TCGA-KN-8430    TCGA-KN-8431    TCGA-KN-8432 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KN-8433    TCGA-KN-8434    TCGA-KN-8436    TCGA-KN-8437    TCGA-KO-8404 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KO-8405    TCGA-KO-8408    TCGA-KO-8409    TCGA-KO-8410    TCGA-KO-8413 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KO-8415    TCGA-KO-8416    TCGA-KO-8417    TCGA-KV-A6GD    TCGA-KV-A6GE 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-KV-A74V    TCGA-MH-A854    TCGA-MH-A855    TCGA-MH-A856    TCGA-MH-A857 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-O9-A75Z    TCGA-P4-A5E7    TCGA-P4-A5E8    TCGA-P4-A5EA    TCGA-P4-AAVL 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-P4-AAVM    TCGA-PJ-A5Z8    TCGA-PJ-A5Z9    TCGA-Q2-A5QZ    TCGA-SX-A71R 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-SX-A71S    TCGA-SX-A71U    TCGA-SX-A71W    TCGA-SX-A7SL    TCGA-SX-A7SM 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-SX-A7SN    TCGA-SX-A7SO    TCGA-SX-A7SP    TCGA-SX-A7SR    TCGA-SX-A7SS 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-SX-A7SU    TCGA-UZ-A9PJ    TCGA-UZ-A9PK    TCGA-UZ-A9PL    TCGA-UZ-A9PN 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-UZ-A9PO    TCGA-UZ-A9PP    TCGA-UZ-A9PR    TCGA-UZ-A9PU    TCGA-UZ-A9PV 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-UZ-A9PX    TCGA-UZ-A9PZ    TCGA-V9-A7HT    TCGA-WN-A9G9    TCGA-WN-AB4C 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-Y8-A897    TCGA-Y8-A898    TCGA-Y8-A8RY    TCGA-Y8-A8RZ    TCGA-Y8-A8S0 
"PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" "PAM WILD-TYPE" 
   TCGA-Y8-A8S1 
"PAM WILD-TYPE" 

Clustering(39) Variable = KDM6A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        0      0      0      1
  KDM6A WILD-TYPE     17     16     10     14
D39V1, multiclass
[1] "Remove cluster labels:" "KDM6A MUTATED"         
clus
  KDM6A MUTATED KDM6A WILD-TYPE 
              1              57 
     TCGA-A3-3311      TCGA-A3-3313      TCGA-A3-3317      TCGA-A3-3322 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3374      TCGA-AK-3427 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AL-3468      TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4099      TCGA-B3-3925 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-B9-4617      TCGA-BP-4161 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-BP-4162      TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-CJ-4634      TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-CJ-4639      TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-CJ-4644 
"KDM6A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        0      0      1      0      0
  KDM6A WILD-TYPE      7     16     15     10      9
D39V2, multiclass
[1] "Remove cluster labels:" "KDM6A MUTATED"         
clus
  KDM6A MUTATED KDM6A WILD-TYPE 
              1              57 
     TCGA-A3-3311      TCGA-A3-3313      TCGA-A3-3317      TCGA-A3-3322 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3374      TCGA-AK-3427 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AL-3468      TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4099      TCGA-B3-3925 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-B9-4617      TCGA-BP-4161 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-BP-4162      TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-CJ-4634      TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-CJ-4639      TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-CJ-4644 
"KDM6A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED       11      0      2
  KDM6A WILD-TYPE    302    168    296
D39V3, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            11             302
  CLUS_2             0             168
  CLUS_3             2             296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        2      0      0      1      8
  KDM6A WILD-TYPE     93    111    142     62    177
D39V4, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0             111
  CLUS_3             0             142
  CLUS_4             1              62
  CLUS_5             8             177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        1      3      4      2
  KDM6A WILD-TYPE    162    158    166    173
D39V5, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             1             162
  CLUS_2             3             158
  CLUS_3             4             166
  CLUS_4             2             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDM6A MUTATED        2      1      0      2      2      2      1
  KDM6A WILD-TYPE    176     61    105    127     50     59     81
D39V6, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2             176
  CLUS_2             1              61
  CLUS_3             0             105
  CLUS_4             2             127
  CLUS_5             2              50
  CLUS_6             2              59
  CLUS_7             1              81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        2      0      2      9
  KDM6A WILD-TYPE    105    179    231    253
D39V7, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2             105
  CLUS_2             0             179
  CLUS_3             2             231
  CLUS_4             9             253
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KDM6A MUTATED        0      2      0      3      0      1      1      0
  KDM6A WILD-TYPE     84     48    122     74    107     31     89     52
                 vv
clus              CLUS_9
  KDM6A MUTATED        6
  KDM6A WILD-TYPE    161
D39V8, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              48
  CLUS_3             0             122
  CLUS_4             3              74
  CLUS_5             0             107
  CLUS_6             1              31
  CLUS_7             1              89
  CLUS_8             0              52
  CLUS_9             6             161
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED       11      0      2
  KDM6A WILD-TYPE    318    164    280
D39V9, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            11             318
  CLUS_2             0             164
  CLUS_3             2             280
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        0      3      1      9
  KDM6A WILD-TYPE     73    297    197    195
D39V10, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0              73
  CLUS_2             3             297
  CLUS_3             1             197
  CLUS_4             9             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        5      1      1      0
  KDM6A WILD-TYPE    150     65     55     96
D39V11, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             5             150
  CLUS_2             1              65
  CLUS_3             1              55
  CLUS_4             0              96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDM6A MUTATED        5      2      0      0      0      0      0
  KDM6A WILD-TYPE     85     71     50     19     37     58     46
D39V12, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             5              85
  CLUS_2             2              71
  CLUS_3             0              50
  CLUS_4             0              19
  CLUS_5             0              37
  CLUS_6             0              58
  CLUS_7             0              46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = GLS MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLS MUTATED        0      0      0      1
  GLS WILD-TYPE     17     16     10     14
D40V1, multiclass
[1] "Remove cluster labels:" "GLS MUTATED"           
clus
  GLS MUTATED GLS WILD-TYPE 
            1            57 
   TCGA-A3-3311    TCGA-A3-3313    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-A3-3374    TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-AK-3455    TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-AL-3468    TCGA-AL-3472    TCGA-AL-3473    TCGA-AS-3777    TCGA-B2-3923 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-B2-3924    TCGA-B2-4098    TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-B3-4103    TCGA-B3-4104    TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-B8-4154    TCGA-B8-4619    TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-B9-4115    TCGA-B9-4116    TCGA-B9-4117    TCGA-BP-4161    TCGA-BP-4162 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-BP-4163    TCGA-BP-4164    TCGA-BP-4167    TCGA-CJ-4634    TCGA-CJ-4636 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-CJ-4637    TCGA-CJ-4638    TCGA-CJ-4639    TCGA-CJ-4640    TCGA-CJ-4641 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-CJ-4643    TCGA-CJ-4644 
"GLS WILD-TYPE" "GLS WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLS MUTATED        0      0      1      0      0
  GLS WILD-TYPE      7     16     15     10      9
D40V2, multiclass
[1] "Remove cluster labels:" "GLS MUTATED"           
clus
  GLS MUTATED GLS WILD-TYPE 
            1            57 
   TCGA-A3-3311    TCGA-A3-3313    TCGA-A3-3317    TCGA-A3-3322    TCGA-A3-3323 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-A3-3326    TCGA-A3-3331    TCGA-A3-3347    TCGA-A3-3349    TCGA-A3-3362 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-A3-3374    TCGA-AK-3427    TCGA-AK-3440    TCGA-AK-3443    TCGA-AK-3453 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-AK-3455    TCGA-AK-3456    TCGA-AK-3465    TCGA-AL-3466    TCGA-AL-3467 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-AL-3468    TCGA-AL-3472    TCGA-AL-3473    TCGA-AS-3777    TCGA-B2-3923 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-B2-3924    TCGA-B2-4098    TCGA-B2-4099    TCGA-B3-3925    TCGA-B3-3926 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-B3-4103    TCGA-B3-4104    TCGA-B8-4143    TCGA-B8-4148    TCGA-B8-4151 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-B8-4154    TCGA-B8-4619    TCGA-B8-4620    TCGA-B9-4113    TCGA-B9-4114 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-B9-4115    TCGA-B9-4116    TCGA-B9-4117    TCGA-BP-4161    TCGA-BP-4162 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-BP-4163    TCGA-BP-4164    TCGA-BP-4167    TCGA-CJ-4634    TCGA-CJ-4636 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-CJ-4637    TCGA-CJ-4638    TCGA-CJ-4639    TCGA-CJ-4640    TCGA-CJ-4641 
"GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" "GLS WILD-TYPE" 
   TCGA-CJ-4643    TCGA-CJ-4644 
"GLS WILD-TYPE" "GLS WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GLS MUTATED        4      0      4
  GLS WILD-TYPE    309    168    294
D40V3, multiclass
        clus
vv       GLS MUTATED GLS WILD-TYPE
  CLUS_1           4           309
  CLUS_2           0           168
  CLUS_3           4           294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLS MUTATED        1      2      0      2      2
  GLS WILD-TYPE     94    109    142     61    183
D40V4, multiclass
        clus
vv       GLS MUTATED GLS WILD-TYPE
  CLUS_1           1            94
  CLUS_2           2           109
  CLUS_3           0           142
  CLUS_4           2            61
  CLUS_5           2           183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLS MUTATED        1      0      4      3
  GLS WILD-TYPE    162    161    166    172
D40V5, multiclass
        clus
vv       GLS MUTATED GLS WILD-TYPE
  CLUS_1           1           162
  CLUS_2           0           161
  CLUS_3           4           166
  CLUS_4           3           172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLS MUTATED        1      3      1      0      0      1      2
  GLS WILD-TYPE    177     59    104    129     52     60     80
D40V6, multiclass
        clus
vv       GLS MUTATED GLS WILD-TYPE
  CLUS_1           1           177
  CLUS_2           3            59
  CLUS_3           1           104
  CLUS_4           0           129
  CLUS_5           0            52
  CLUS_6           1            60
  CLUS_7           2            80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLS MUTATED        1      2      2      3
  GLS WILD-TYPE    106    177    231    259
D40V7, multiclass
        clus
vv       GLS MUTATED GLS WILD-TYPE
  CLUS_1           1           106
  CLUS_2           2           177
  CLUS_3           2           231
  CLUS_4           3           259
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GLS MUTATED        1      2      1      0      1      0      1      0      2
  GLS WILD-TYPE     83     48    121     77    106     32     89     52    165
D40V8, multiclass
        clus
vv       GLS MUTATED GLS WILD-TYPE
  CLUS_1           1            83
  CLUS_2           2            48
  CLUS_3           1           121
  CLUS_4           0            77
  CLUS_5           1           106
  CLUS_6           0            32
  CLUS_7           1            89
  CLUS_8           0            52
  CLUS_9           2           165
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GLS MUTATED        5      0      4
  GLS WILD-TYPE    324    164    278
D40V9, multiclass
        clus
vv       GLS MUTATED GLS WILD-TYPE
  CLUS_1           5           324
  CLUS_2           0           164
  CLUS_3           4           278
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLS MUTATED        1      3      2      3
  GLS WILD-TYPE     72    297    196    201
D40V10, multiclass
        clus
vv       GLS MUTATED GLS WILD-TYPE
  CLUS_1           1            72
  CLUS_2           3           297
  CLUS_3           2           196
  CLUS_4           3           201
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLS MUTATED        3      1      0      0
  GLS WILD-TYPE    152     65     56     96
D40V11, multiclass
        clus
vv       GLS MUTATED GLS WILD-TYPE
  CLUS_1           3           152
  CLUS_2           1            65
  CLUS_3           0            56
  CLUS_4           0            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLS MUTATED        0      2      1      0      0      0      1
  GLS WILD-TYPE     90     71     49     19     37     58     45
D40V12, multiclass
        clus
vv       GLS MUTATED GLS WILD-TYPE
  CLUS_1           0            90
  CLUS_2           2            71
  CLUS_3           1            49
  CLUS_4           0            19
  CLUS_5           0            37
  CLUS_6           0            58
  CLUS_7           1            45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = EPS15L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPS15L1 MUTATED        0      0      1      0
  EPS15L1 WILD-TYPE     17     16      9     15
D41V1, multiclass
[1] "Remove cluster labels:" "EPS15L1 MUTATED"       
clus
  EPS15L1 MUTATED EPS15L1 WILD-TYPE 
                1                57 
       TCGA-A3-3311        TCGA-A3-3317        TCGA-A3-3322        TCGA-A3-3323 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-A3-3326        TCGA-A3-3331        TCGA-A3-3347        TCGA-A3-3349 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-A3-3362        TCGA-A3-3374        TCGA-AK-3427        TCGA-AK-3440 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3455        TCGA-AK-3456 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467        TCGA-AL-3468 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AS-3777        TCGA-B2-3923 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4098        TCGA-B2-4099        TCGA-B3-3925 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-B3-3926        TCGA-B3-4103        TCGA-B3-4104        TCGA-B8-4143 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-B8-4148        TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4619 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-B8-4620        TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4115 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-B9-4116        TCGA-B9-4117        TCGA-B9-4617        TCGA-BP-4161 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-BP-4162        TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-CJ-4634        TCGA-CJ-4636        TCGA-CJ-4637        TCGA-CJ-4638 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-CJ-4639        TCGA-CJ-4640        TCGA-CJ-4641        TCGA-CJ-4643 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-CJ-4644 
"EPS15L1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPS15L1 MUTATED        0      0      1      0      0
  EPS15L1 WILD-TYPE      7     16     15     10      9
D41V2, multiclass
[1] "Remove cluster labels:" "EPS15L1 MUTATED"       
clus
  EPS15L1 MUTATED EPS15L1 WILD-TYPE 
                1                57 
       TCGA-A3-3311        TCGA-A3-3317        TCGA-A3-3322        TCGA-A3-3323 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-A3-3326        TCGA-A3-3331        TCGA-A3-3347        TCGA-A3-3349 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-A3-3362        TCGA-A3-3374        TCGA-AK-3427        TCGA-AK-3440 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3455        TCGA-AK-3456 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467        TCGA-AL-3468 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AS-3777        TCGA-B2-3923 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4098        TCGA-B2-4099        TCGA-B3-3925 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-B3-3926        TCGA-B3-4103        TCGA-B3-4104        TCGA-B8-4143 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-B8-4148        TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4619 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-B8-4620        TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4115 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-B9-4116        TCGA-B9-4117        TCGA-B9-4617        TCGA-BP-4161 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-BP-4162        TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-CJ-4634        TCGA-CJ-4636        TCGA-CJ-4637        TCGA-CJ-4638 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-CJ-4639        TCGA-CJ-4640        TCGA-CJ-4641        TCGA-CJ-4643 
"EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" "EPS15L1 WILD-TYPE" 
       TCGA-CJ-4644 
"EPS15L1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EPS15L1 MUTATED        4      3      3
  EPS15L1 WILD-TYPE    309    165    295
D41V3, multiclass
        clus
vv       EPS15L1 MUTATED EPS15L1 WILD-TYPE
  CLUS_1               4               309
  CLUS_2               3               165
  CLUS_3               3               295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPS15L1 MUTATED        1      1      0      1      3
  EPS15L1 WILD-TYPE     94    110    142     62    182
D41V4, multiclass
        clus
vv       EPS15L1 MUTATED EPS15L1 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1               110
  CLUS_3               0               142
  CLUS_4               1                62
  CLUS_5               3               182
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPS15L1 MUTATED        2      4      3      0
  EPS15L1 WILD-TYPE    161    157    167    175
D41V5, multiclass
        clus
vv       EPS15L1 MUTATED EPS15L1 WILD-TYPE
  CLUS_1               2               161
  CLUS_2               4               157
  CLUS_3               3               167
  CLUS_4               0               175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPS15L1 MUTATED        2      1      2      2      1      1      0
  EPS15L1 WILD-TYPE    176     61    103    127     51     60     82
D41V6, multiclass
        clus
vv       EPS15L1 MUTATED EPS15L1 WILD-TYPE
  CLUS_1               2               176
  CLUS_2               1                61
  CLUS_3               2               103
  CLUS_4               2               127
  CLUS_5               1                51
  CLUS_6               1                60
  CLUS_7               0                82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPS15L1 MUTATED        2      2      2      4
  EPS15L1 WILD-TYPE    105    177    231    258
D41V7, multiclass
        clus
vv       EPS15L1 MUTATED EPS15L1 WILD-TYPE
  CLUS_1               2               105
  CLUS_2               2               177
  CLUS_3               2               231
  CLUS_4               4               258
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EPS15L1 MUTATED        1      0      0      3      2      0      2      0
  EPS15L1 WILD-TYPE     83     50    122     74    105     32     88     52
                   vv
clus                CLUS_9
  EPS15L1 MUTATED        2
  EPS15L1 WILD-TYPE    165
D41V8, multiclass
        clus
vv       EPS15L1 MUTATED EPS15L1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                50
  CLUS_3               0               122
  CLUS_4               3                74
  CLUS_5               2               105
  CLUS_6               0                32
  CLUS_7               2                88
  CLUS_8               0                52
  CLUS_9               2               165
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EPS15L1 MUTATED        4      5      1
  EPS15L1 WILD-TYPE    325    159    281
D41V9, multiclass
        clus
vv       EPS15L1 MUTATED EPS15L1 WILD-TYPE
  CLUS_1               4               325
  CLUS_2               5               159
  CLUS_3               1               281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPS15L1 MUTATED        1      3      2      4
  EPS15L1 WILD-TYPE     72    297    196    200
D41V10, multiclass
        clus
vv       EPS15L1 MUTATED EPS15L1 WILD-TYPE
  CLUS_1               1                72
  CLUS_2               3               297
  CLUS_3               2               196
  CLUS_4               4               200
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPS15L1 MUTATED        4      1      0      0
  EPS15L1 WILD-TYPE    151     65     56     96
D41V11, multiclass
        clus
vv       EPS15L1 MUTATED EPS15L1 WILD-TYPE
  CLUS_1               4               151
  CLUS_2               1                65
  CLUS_3               0                56
  CLUS_4               0                96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPS15L1 MUTATED        1      1      2      0      0      0      1
  EPS15L1 WILD-TYPE     89     72     48     19     37     58     45
D41V12, multiclass
        clus
vv       EPS15L1 MUTATED EPS15L1 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               1                72
  CLUS_3               2                48
  CLUS_4               0                19
  CLUS_5               0                37
  CLUS_6               0                58
  CLUS_7               1                45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = NOM1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOM1 MUTATED        0      0      0      0
  NOM1 WILD-TYPE     17     16     10     15
D42V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOM1 MUTATED        0      0      0      0      0
  NOM1 WILD-TYPE      7     16     16     10      9
D42V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOM1 MUTATED        1      1      4
  NOM1 WILD-TYPE    312    167    294
D42V3, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            1            312
  CLUS_2            1            167
  CLUS_3            4            294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOM1 MUTATED        0      2      2      0      2
  NOM1 WILD-TYPE     95    109    140     63    183
D42V4, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            0             95
  CLUS_2            2            109
  CLUS_3            2            140
  CLUS_4            0             63
  CLUS_5            2            183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOM1 MUTATED        0      2      1      3
  NOM1 WILD-TYPE    163    159    169    172
D42V5, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            0            163
  CLUS_2            2            159
  CLUS_3            1            169
  CLUS_4            3            172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOM1 MUTATED        2      0      1      2      1      0      0
  NOM1 WILD-TYPE    176     62    104    127     51     61     82
D42V6, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            2            176
  CLUS_2            0             62
  CLUS_3            1            104
  CLUS_4            2            127
  CLUS_5            1             51
  CLUS_6            0             61
  CLUS_7            0             82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOM1 MUTATED        0      2      2      2
  NOM1 WILD-TYPE    107    177    231    260
D42V7, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            0            107
  CLUS_2            2            177
  CLUS_3            2            231
  CLUS_4            2            260
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NOM1 MUTATED        0      1      1      1      0      0      1      1      1
  NOM1 WILD-TYPE     84     49    121     76    107     32     89     51    166
D42V8, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             49
  CLUS_3            1            121
  CLUS_4            1             76
  CLUS_5            0            107
  CLUS_6            0             32
  CLUS_7            1             89
  CLUS_8            1             51
  CLUS_9            1            166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOM1 MUTATED        2      2      2
  NOM1 WILD-TYPE    327    162    280
D42V9, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            2            327
  CLUS_2            2            162
  CLUS_3            2            280
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOM1 MUTATED        0      2      2      2
  NOM1 WILD-TYPE     73    298    196    202
D42V10, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            0             73
  CLUS_2            2            298
  CLUS_3            2            196
  CLUS_4            2            202
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOM1 MUTATED        2      0      1      1
  NOM1 WILD-TYPE    153     66     55     95
D42V11, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            2            153
  CLUS_2            0             66
  CLUS_3            1             55
  CLUS_4            1             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOM1 MUTATED        2      0      0      0      1      1      0
  NOM1 WILD-TYPE     88     73     50     19     36     57     46
D42V12, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            2             88
  CLUS_2            0             73
  CLUS_3            0             50
  CLUS_4            0             19
  CLUS_5            1             36
  CLUS_6            1             57
  CLUS_7            0             46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = CDK12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        0      0      0      0
  CDK12 WILD-TYPE     17     16     10     15
D43V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDK12 MUTATED        0      0      0      0      0
  CDK12 WILD-TYPE      7     16     16     10      9
D43V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        2      3      3
  CDK12 WILD-TYPE    311    165    295
D43V3, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             2             311
  CLUS_2             3             165
  CLUS_3             3             295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDK12 MUTATED        2      2      2      0      1
  CDK12 WILD-TYPE     93    109    140     63    184
D43V4, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2             109
  CLUS_3             2             140
  CLUS_4             0              63
  CLUS_5             1             184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        2      1      1      4
  CDK12 WILD-TYPE    161    160    169    171
D43V5, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             2             161
  CLUS_2             1             160
  CLUS_3             1             169
  CLUS_4             4             171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDK12 MUTATED        2      1      1      0      2      2      0
  CDK12 WILD-TYPE    176     61    104    129     50     59     82
D43V6, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             1              61
  CLUS_3             1             104
  CLUS_4             0             129
  CLUS_5             2              50
  CLUS_6             2              59
  CLUS_7             0              82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        1      3      2      2
  CDK12 WILD-TYPE    106    176    231    260
D43V7, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1             106
  CLUS_2             3             176
  CLUS_3             2             231
  CLUS_4             2             260
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDK12 MUTATED        1      1      1      0      3      0      1      0
  CDK12 WILD-TYPE     83     49    121     77    104     32     89     52
                 vv
clus              CLUS_9
  CDK12 MUTATED        1
  CDK12 WILD-TYPE    166
D43V8, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              49
  CLUS_3             1             121
  CLUS_4             0              77
  CLUS_5             3             104
  CLUS_6             0              32
  CLUS_7             1              89
  CLUS_8             0              52
  CLUS_9             1             166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        3      1      4
  CDK12 WILD-TYPE    326    163    278
D43V9, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             3             326
  CLUS_2             1             163
  CLUS_3             4             278
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        1      6      1      0
  CDK12 WILD-TYPE     72    294    197    204
D43V10, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             6             294
  CLUS_3             1             197
  CLUS_4             0             204
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        1      1      1      2
  CDK12 WILD-TYPE    154     65     55     94
D43V11, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1             154
  CLUS_2             1              65
  CLUS_3             1              55
  CLUS_4             2              94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDK12 MUTATED        0      1      1      0      0      2      1
  CDK12 WILD-TYPE     90     72     49     19     37     56     45
D43V12, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             1              72
  CLUS_3             1              49
  CLUS_4             0              19
  CLUS_5             0              37
  CLUS_6             2              56
  CLUS_7             1              45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = ARHGAP35 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP35 MUTATED        0      0      0      0
  ARHGAP35 WILD-TYPE     17     16     10     15
D44V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP35 MUTATED        0      0      0      0      0
  ARHGAP35 WILD-TYPE      7     16     16     10      9
D44V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP35 MUTATED        2      1      4
  ARHGAP35 WILD-TYPE    311    167    294
D44V3, multiclass
        clus
vv       ARHGAP35 MUTATED ARHGAP35 WILD-TYPE
  CLUS_1                2                311
  CLUS_2                1                167
  CLUS_3                4                294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP35 MUTATED        1      1      1      3      0
  ARHGAP35 WILD-TYPE     94    110    141     60    185
D44V4, multiclass
        clus
vv       ARHGAP35 MUTATED ARHGAP35 WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                1                110
  CLUS_3                1                141
  CLUS_4                3                 60
  CLUS_5                0                185
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP35 MUTATED        1      2      1      3
  ARHGAP35 WILD-TYPE    162    159    169    172
D44V5, multiclass
        clus
vv       ARHGAP35 MUTATED ARHGAP35 WILD-TYPE
  CLUS_1                1                162
  CLUS_2                2                159
  CLUS_3                1                169
  CLUS_4                3                172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGAP35 MUTATED        2      0      2      1      0      0      2
  ARHGAP35 WILD-TYPE    176     62    103    128     52     61     80
D44V6, multiclass
        clus
vv       ARHGAP35 MUTATED ARHGAP35 WILD-TYPE
  CLUS_1                2                176
  CLUS_2                0                 62
  CLUS_3                2                103
  CLUS_4                1                128
  CLUS_5                0                 52
  CLUS_6                0                 61
  CLUS_7                2                 80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP35 MUTATED        1      2      3      1
  ARHGAP35 WILD-TYPE    106    177    230    261
D44V7, multiclass
        clus
vv       ARHGAP35 MUTATED ARHGAP35 WILD-TYPE
  CLUS_1                1                106
  CLUS_2                2                177
  CLUS_3                3                230
  CLUS_4                1                261
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGAP35 MUTATED        0      1      2      1      1      0      1      1
  ARHGAP35 WILD-TYPE     84     49    120     76    106     32     89     51
                    vv
clus                 CLUS_9
  ARHGAP35 MUTATED        0
  ARHGAP35 WILD-TYPE    167
D44V8, multiclass
        clus
vv       ARHGAP35 MUTATED ARHGAP35 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 49
  CLUS_3                2                120
  CLUS_4                1                 76
  CLUS_5                1                106
  CLUS_6                0                 32
  CLUS_7                1                 89
  CLUS_8                1                 51
  CLUS_9                0                167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP35 MUTATED        0      3      4
  ARHGAP35 WILD-TYPE    329    161    278
D44V9, multiclass
        clus
vv       ARHGAP35 MUTATED ARHGAP35 WILD-TYPE
  CLUS_1                0                329
  CLUS_2                3                161
  CLUS_3                4                278
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP35 MUTATED        0      5      2      0
  ARHGAP35 WILD-TYPE     73    295    196    204
D44V10, multiclass
        clus
vv       ARHGAP35 MUTATED ARHGAP35 WILD-TYPE
  CLUS_1                0                 73
  CLUS_2                5                295
  CLUS_3                2                196
  CLUS_4                0                204
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP35 MUTATED        0      0      1      0
  ARHGAP35 WILD-TYPE    155     66     55     96
D44V11, multiclass
[1] "Remove cluster labels:" "ARHGAP35 MUTATED"      
clus
  ARHGAP35 MUTATED ARHGAP35 WILD-TYPE 
                 1                372 
        TCGA-2K-A9WE         TCGA-2Z-A9J1         TCGA-2Z-A9J2 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-2Z-A9J3         TCGA-2Z-A9J5         TCGA-2Z-A9J6 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-2Z-A9JD         TCGA-2Z-A9JG         TCGA-2Z-A9JI 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-2Z-A9JJ         TCGA-2Z-A9JK         TCGA-2Z-A9JL 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-2Z-A9JM         TCGA-2Z-A9JN         TCGA-2Z-A9JO 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-2Z-A9JP         TCGA-2Z-A9JQ         TCGA-2Z-A9JR 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-2Z-A9JT         TCGA-4A-A93W         TCGA-4A-A93X 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-4A-A93Y         TCGA-5P-A9JV         TCGA-5P-A9JW 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-5P-A9JY         TCGA-5P-A9JZ         TCGA-5P-A9K0 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-5P-A9K6         TCGA-5P-A9K8         TCGA-5P-A9KA 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-5P-A9KC         TCGA-5P-A9KE         TCGA-A3-3317 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A3-3358         TCGA-A3-3387         TCGA-A4-7286 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A4-7287         TCGA-A4-7288         TCGA-A4-7585 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A4-7734         TCGA-A4-7828         TCGA-A4-7996 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A4-7997         TCGA-A4-8098         TCGA-A4-8310 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A4-8312         TCGA-A4-8515         TCGA-A4-8517 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A4-8518         TCGA-A4-8630         TCGA-A4-A57E 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A4-A5XZ         TCGA-A4-A5Y0         TCGA-A4-A5Y1 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A4-A772         TCGA-AK-3440         TCGA-AK-3458 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-AK-3465         TCGA-AL-3466         TCGA-AL-3472 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-AL-3473         TCGA-AL-7173         TCGA-AT-A5NU 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-4700         TCGA-B0-4706         TCGA-B0-4710 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-4712         TCGA-B0-4810         TCGA-B0-4811 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-4836         TCGA-B0-4837         TCGA-B0-4852 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-5080         TCGA-B0-5085         TCGA-B0-5088 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-5399         TCGA-B0-5691         TCGA-B0-5692 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-5693         TCGA-B0-5694         TCGA-B0-5695 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-5696         TCGA-B0-5699         TCGA-B0-5702 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-5705         TCGA-B0-5709         TCGA-B1-5398 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B1-A47N         TCGA-B1-A47O         TCGA-B1-A654 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B1-A656         TCGA-B1-A657         TCGA-B2-3923 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B2-3924         TCGA-B2-5633         TCGA-B2-5635 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B3-3925         TCGA-B3-4104         TCGA-B3-8121 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B4-5377         TCGA-B4-5836         TCGA-B8-4621 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B8-5545         TCGA-B8-5550         TCGA-B8-5551 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B8-5552         TCGA-B8-5553         TCGA-B9-4115 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B9-4117         TCGA-B9-5155         TCGA-B9-5156 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B9-A44B         TCGA-B9-A5W9         TCGA-B9-A69E 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B9-A8YH         TCGA-B9-A8YI         TCGA-BP-4173 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4340         TCGA-BP-4761         TCGA-BP-4770 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4787         TCGA-BP-4789         TCGA-BP-4790 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4804         TCGA-BP-4807         TCGA-BP-4961 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4967         TCGA-BP-4968         TCGA-BP-4970 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4974         TCGA-BP-4976         TCGA-BP-4981 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4982         TCGA-BP-4985         TCGA-BP-4988 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4989         TCGA-BP-4992         TCGA-BP-4995 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4998         TCGA-BP-5001         TCGA-BP-5008 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-5009         TCGA-BQ-5876         TCGA-BQ-5877 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-5878         TCGA-BQ-5879         TCGA-BQ-5880 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-5881         TCGA-BQ-5882         TCGA-BQ-5883 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-5884         TCGA-BQ-5886         TCGA-BQ-5887 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-5888         TCGA-BQ-5889         TCGA-BQ-5890 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-5891         TCGA-BQ-5892         TCGA-BQ-5893 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-5894         TCGA-BQ-7044         TCGA-BQ-7045 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-7046         TCGA-BQ-7048         TCGA-BQ-7049 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-7050         TCGA-BQ-7051         TCGA-BQ-7053 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-7055         TCGA-BQ-7056         TCGA-BQ-7058 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-7059         TCGA-BQ-7060         TCGA-BQ-7061 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-7062         TCGA-CJ-4870         TCGA-CJ-4875 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CJ-4876         TCGA-CJ-4878         TCGA-CJ-4881 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CJ-4887         TCGA-CJ-4889         TCGA-CJ-4890 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CJ-4895         TCGA-CJ-4900         TCGA-CJ-5671 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CJ-5675         TCGA-CJ-5676         TCGA-CJ-5681 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CJ-5683         TCGA-CJ-5686         TCGA-CJ-6031 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CJ-6032         TCGA-CW-5585         TCGA-CW-5589 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CW-6087         TCGA-CZ-4854         TCGA-CZ-4857 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CZ-4858         TCGA-CZ-5453         TCGA-CZ-5454 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CZ-5455         TCGA-CZ-5457         TCGA-CZ-5459 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CZ-5462         TCGA-CZ-5463         TCGA-CZ-5466 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CZ-5467         TCGA-CZ-5469         TCGA-CZ-5470 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CZ-5989         TCGA-DV-5565         TCGA-DV-5566 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-DV-5569         TCGA-DW-5560         TCGA-DW-5561 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-DW-7834         TCGA-DW-7836         TCGA-DW-7837 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-DW-7838         TCGA-DW-7839         TCGA-DW-7840 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-DW-7842         TCGA-DZ-6131         TCGA-DZ-6132 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-DZ-6133         TCGA-DZ-6134         TCGA-DZ-6135 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-EU-5904         TCGA-EV-5901         TCGA-EV-5902 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-EV-5903         TCGA-F9-A4JJ         TCGA-F9-A7Q0 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-F9-A8NY         TCGA-F9-A97G         TCGA-G7-6789 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-G7-6790         TCGA-G7-6792         TCGA-G7-6793 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-G7-6795         TCGA-G7-6796         TCGA-G7-7501 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-G7-7502         TCGA-G7-A4TM         TCGA-G7-A8LB 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-G7-A8LC         TCGA-G7-A8LD         TCGA-G7-A8LE 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-GL-6846         TCGA-GL-7773         TCGA-GL-7966 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-GL-8500         TCGA-GL-A4EM         TCGA-GL-A59T 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-GL-A9DC         TCGA-GL-A9DD         TCGA-GL-A9DE 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-HE-7128         TCGA-HE-7130         TCGA-HE-A5NJ 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-HE-A5NL         TCGA-IA-A40U         TCGA-IA-A40X 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-IA-A40Y         TCGA-IA-A83S         TCGA-IA-A83T 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-IA-A83V         TCGA-IA-A83W         TCGA-IZ-8195 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-IZ-8196         TCGA-IZ-A6M9         TCGA-J7-6720 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-J7-8537         TCGA-J7-A8I2         TCGA-KL-8323 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KL-8324         TCGA-KL-8327         TCGA-KL-8328 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KL-8331         TCGA-KL-8332         TCGA-KL-8333 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KL-8334         TCGA-KL-8335         TCGA-KL-8336 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KL-8338         TCGA-KL-8339         TCGA-KL-8340 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KL-8341         TCGA-KL-8342         TCGA-KL-8343 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KL-8344         TCGA-KL-8345         TCGA-KM-8438 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KM-8439         TCGA-KM-8441         TCGA-KM-8442 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KM-8639         TCGA-KN-8418         TCGA-KN-8419 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KN-8422         TCGA-KN-8423         TCGA-KN-8424 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KN-8426         TCGA-KN-8427         TCGA-KN-8428 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KN-8429         TCGA-KN-8430         TCGA-KN-8431 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KN-8432         TCGA-KN-8433         TCGA-KN-8434 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KN-8436         TCGA-KN-8437         TCGA-KO-8404 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KO-8405         TCGA-KO-8408         TCGA-KO-8409 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KO-8410         TCGA-KO-8413         TCGA-KO-8415 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KO-8416         TCGA-KO-8417         TCGA-KV-A6GD 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KV-A6GE         TCGA-KV-A74V         TCGA-MH-A854 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-MH-A855         TCGA-MH-A856         TCGA-MH-A857 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-O9-A75Z         TCGA-P4-A5E6         TCGA-P4-A5E7 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-P4-A5E8         TCGA-P4-A5EA         TCGA-P4-AAVL 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-P4-AAVM         TCGA-PJ-A5Z8         TCGA-PJ-A5Z9 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-Q2-A5QZ         TCGA-SX-A71R         TCGA-SX-A71S 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-SX-A71U         TCGA-SX-A71W         TCGA-SX-A7SL 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-SX-A7SM         TCGA-SX-A7SN         TCGA-SX-A7SO 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-SX-A7SP         TCGA-SX-A7SR         TCGA-SX-A7SS 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-SX-A7SU         TCGA-UZ-A9PJ         TCGA-UZ-A9PK 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-UZ-A9PL         TCGA-UZ-A9PN         TCGA-UZ-A9PO 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-UZ-A9PP         TCGA-UZ-A9PR         TCGA-UZ-A9PU 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-UZ-A9PV         TCGA-UZ-A9PX         TCGA-UZ-A9PZ 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-V9-A7HT         TCGA-WN-A9G9         TCGA-WN-AB4C 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-Y8-A897         TCGA-Y8-A898         TCGA-Y8-A8RY 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-Y8-A8RZ         TCGA-Y8-A8S0         TCGA-Y8-A8S1 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGAP35 MUTATED        0      1      0      0      0      0      0
  ARHGAP35 WILD-TYPE     90     72     50     19     37     58     46
D44V12, multiclass
[1] "Remove cluster labels:" "ARHGAP35 MUTATED"      
clus
  ARHGAP35 MUTATED ARHGAP35 WILD-TYPE 
                 1                372 
        TCGA-2K-A9WE         TCGA-2Z-A9J1         TCGA-2Z-A9J2 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-2Z-A9J3         TCGA-2Z-A9J5         TCGA-2Z-A9J6 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-2Z-A9JD         TCGA-2Z-A9JG         TCGA-2Z-A9JI 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-2Z-A9JJ         TCGA-2Z-A9JK         TCGA-2Z-A9JL 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-2Z-A9JM         TCGA-2Z-A9JN         TCGA-2Z-A9JO 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-2Z-A9JP         TCGA-2Z-A9JQ         TCGA-2Z-A9JR 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-2Z-A9JT         TCGA-4A-A93W         TCGA-4A-A93X 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-4A-A93Y         TCGA-5P-A9JV         TCGA-5P-A9JW 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-5P-A9JY         TCGA-5P-A9JZ         TCGA-5P-A9K0 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-5P-A9K6         TCGA-5P-A9K8         TCGA-5P-A9KA 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-5P-A9KC         TCGA-5P-A9KE         TCGA-A3-3317 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A3-3358         TCGA-A3-3387         TCGA-A4-7286 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A4-7287         TCGA-A4-7288         TCGA-A4-7585 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A4-7734         TCGA-A4-7828         TCGA-A4-7996 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A4-7997         TCGA-A4-8098         TCGA-A4-8310 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A4-8312         TCGA-A4-8515         TCGA-A4-8517 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A4-8518         TCGA-A4-8630         TCGA-A4-A57E 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A4-A5XZ         TCGA-A4-A5Y0         TCGA-A4-A5Y1 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-A4-A772         TCGA-AK-3440         TCGA-AK-3458 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-AK-3465         TCGA-AL-3466         TCGA-AL-3472 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-AL-3473         TCGA-AL-7173         TCGA-AT-A5NU 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-4700         TCGA-B0-4706         TCGA-B0-4710 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-4712         TCGA-B0-4810         TCGA-B0-4811 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-4836         TCGA-B0-4837         TCGA-B0-4852 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-5080         TCGA-B0-5085         TCGA-B0-5088 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-5399         TCGA-B0-5691         TCGA-B0-5692 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-5693         TCGA-B0-5694         TCGA-B0-5695 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-5696         TCGA-B0-5699         TCGA-B0-5702 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B0-5705         TCGA-B0-5709         TCGA-B1-5398 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B1-A47N         TCGA-B1-A47O         TCGA-B1-A654 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B1-A656         TCGA-B1-A657         TCGA-B2-3923 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B2-3924         TCGA-B2-5633         TCGA-B2-5635 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B3-3925         TCGA-B3-4104         TCGA-B3-8121 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B4-5377         TCGA-B4-5836         TCGA-B8-4621 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B8-5545         TCGA-B8-5550         TCGA-B8-5551 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B8-5552         TCGA-B8-5553         TCGA-B9-4115 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B9-4117         TCGA-B9-5155         TCGA-B9-5156 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B9-A44B         TCGA-B9-A5W9         TCGA-B9-A69E 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-B9-A8YH         TCGA-B9-A8YI         TCGA-BP-4173 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4340         TCGA-BP-4761         TCGA-BP-4770 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4787         TCGA-BP-4789         TCGA-BP-4790 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4804         TCGA-BP-4807         TCGA-BP-4961 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4967         TCGA-BP-4968         TCGA-BP-4970 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4974         TCGA-BP-4976         TCGA-BP-4981 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4982         TCGA-BP-4985         TCGA-BP-4988 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4989         TCGA-BP-4992         TCGA-BP-4995 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-4998         TCGA-BP-5001         TCGA-BP-5008 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BP-5009         TCGA-BQ-5876         TCGA-BQ-5877 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-5878         TCGA-BQ-5879         TCGA-BQ-5880 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-5881         TCGA-BQ-5882         TCGA-BQ-5883 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-5884         TCGA-BQ-5886         TCGA-BQ-5887 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-5888         TCGA-BQ-5889         TCGA-BQ-5890 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-5891         TCGA-BQ-5892         TCGA-BQ-5893 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-5894         TCGA-BQ-7044         TCGA-BQ-7045 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-7046         TCGA-BQ-7048         TCGA-BQ-7049 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-7050         TCGA-BQ-7051         TCGA-BQ-7053 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-7055         TCGA-BQ-7056         TCGA-BQ-7058 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-7059         TCGA-BQ-7060         TCGA-BQ-7061 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-BQ-7062         TCGA-CJ-4870         TCGA-CJ-4875 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CJ-4876         TCGA-CJ-4878         TCGA-CJ-4881 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CJ-4887         TCGA-CJ-4889         TCGA-CJ-4890 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CJ-4895         TCGA-CJ-4900         TCGA-CJ-5671 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CJ-5675         TCGA-CJ-5676         TCGA-CJ-5681 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CJ-5683         TCGA-CJ-5686         TCGA-CJ-6031 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CJ-6032         TCGA-CW-5585         TCGA-CW-5589 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CW-6087         TCGA-CZ-4854         TCGA-CZ-4857 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CZ-4858         TCGA-CZ-5453         TCGA-CZ-5454 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CZ-5455         TCGA-CZ-5457         TCGA-CZ-5459 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CZ-5462         TCGA-CZ-5463         TCGA-CZ-5466 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CZ-5467         TCGA-CZ-5469         TCGA-CZ-5470 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-CZ-5989         TCGA-DV-5565         TCGA-DV-5566 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-DV-5569         TCGA-DW-5560         TCGA-DW-5561 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-DW-7834         TCGA-DW-7836         TCGA-DW-7837 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-DW-7838         TCGA-DW-7839         TCGA-DW-7840 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-DW-7842         TCGA-DZ-6131         TCGA-DZ-6132 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-DZ-6133         TCGA-DZ-6134         TCGA-DZ-6135 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-EU-5904         TCGA-EV-5901         TCGA-EV-5902 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-EV-5903         TCGA-F9-A4JJ         TCGA-F9-A7Q0 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-F9-A8NY         TCGA-F9-A97G         TCGA-G7-6789 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-G7-6790         TCGA-G7-6792         TCGA-G7-6793 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-G7-6795         TCGA-G7-6796         TCGA-G7-7501 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-G7-7502         TCGA-G7-A4TM         TCGA-G7-A8LB 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-G7-A8LC         TCGA-G7-A8LD         TCGA-G7-A8LE 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-GL-6846         TCGA-GL-7773         TCGA-GL-7966 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-GL-8500         TCGA-GL-A4EM         TCGA-GL-A59T 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-GL-A9DC         TCGA-GL-A9DD         TCGA-GL-A9DE 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-HE-7128         TCGA-HE-7130         TCGA-HE-A5NJ 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-HE-A5NL         TCGA-IA-A40U         TCGA-IA-A40X 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-IA-A40Y         TCGA-IA-A83S         TCGA-IA-A83T 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-IA-A83V         TCGA-IA-A83W         TCGA-IZ-8195 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-IZ-8196         TCGA-IZ-A6M9         TCGA-J7-6720 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-J7-8537         TCGA-J7-A8I2         TCGA-KL-8323 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KL-8324         TCGA-KL-8327         TCGA-KL-8328 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KL-8331         TCGA-KL-8332         TCGA-KL-8333 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KL-8334         TCGA-KL-8335         TCGA-KL-8336 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KL-8338         TCGA-KL-8339         TCGA-KL-8340 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KL-8341         TCGA-KL-8342         TCGA-KL-8343 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KL-8344         TCGA-KL-8345         TCGA-KM-8438 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KM-8439         TCGA-KM-8441         TCGA-KM-8442 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KM-8639         TCGA-KN-8418         TCGA-KN-8419 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KN-8422         TCGA-KN-8423         TCGA-KN-8424 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KN-8426         TCGA-KN-8427         TCGA-KN-8428 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KN-8429         TCGA-KN-8430         TCGA-KN-8431 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KN-8432         TCGA-KN-8433         TCGA-KN-8434 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KN-8436         TCGA-KN-8437         TCGA-KO-8404 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KO-8405         TCGA-KO-8408         TCGA-KO-8409 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KO-8410         TCGA-KO-8413         TCGA-KO-8415 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KO-8416         TCGA-KO-8417         TCGA-KV-A6GD 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-KV-A6GE         TCGA-KV-A74V         TCGA-MH-A854 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-MH-A855         TCGA-MH-A856         TCGA-MH-A857 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-O9-A75Z         TCGA-P4-A5E6         TCGA-P4-A5E7 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-P4-A5E8         TCGA-P4-A5EA         TCGA-P4-AAVL 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-P4-AAVM         TCGA-PJ-A5Z8         TCGA-PJ-A5Z9 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-Q2-A5QZ         TCGA-SX-A71R         TCGA-SX-A71S 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-SX-A71U         TCGA-SX-A71W         TCGA-SX-A7SL 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-SX-A7SM         TCGA-SX-A7SN         TCGA-SX-A7SO 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-SX-A7SP         TCGA-SX-A7SR         TCGA-SX-A7SS 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-SX-A7SU         TCGA-UZ-A9PJ         TCGA-UZ-A9PK 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-UZ-A9PL         TCGA-UZ-A9PN         TCGA-UZ-A9PO 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-UZ-A9PP         TCGA-UZ-A9PR         TCGA-UZ-A9PU 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-UZ-A9PV         TCGA-UZ-A9PX         TCGA-UZ-A9PZ 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-V9-A7HT         TCGA-WN-A9G9         TCGA-WN-AB4C 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-Y8-A897         TCGA-Y8-A898         TCGA-Y8-A8RY 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 
        TCGA-Y8-A8RZ         TCGA-Y8-A8S0         TCGA-Y8-A8S1 
"ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" "ARHGAP35 WILD-TYPE" 

Clustering(45) Variable = RIMBP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMBP3 MUTATED        1      0      0      0
  RIMBP3 WILD-TYPE     16     16     10     15
D45V1, multiclass
[1] "Remove cluster labels:" "RIMBP3 MUTATED"        
clus
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               1               57 
      TCGA-A3-3311       TCGA-A3-3313       TCGA-A3-3317       TCGA-A3-3322 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3374       TCGA-AK-3427 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AL-3468       TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B8-4619       TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-B9-4117       TCGA-B9-4617 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4161       TCGA-BP-4162       TCGA-BP-4163       TCGA-BP-4167 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4634       TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4639       TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4644 
"RIMBP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIMBP3 MUTATED        0      0      0      1      0
  RIMBP3 WILD-TYPE      7     16     16      9      9
D45V2, multiclass
[1] "Remove cluster labels:" "RIMBP3 MUTATED"        
clus
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               1               57 
      TCGA-A3-3311       TCGA-A3-3313       TCGA-A3-3317       TCGA-A3-3322 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3374       TCGA-AK-3427 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AL-3468       TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B8-4619       TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-B9-4117       TCGA-B9-4617 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4161       TCGA-BP-4162       TCGA-BP-4163       TCGA-BP-4167 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4634       TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4639       TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4644 
"RIMBP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RIMBP3 MUTATED        2      1      2
  RIMBP3 WILD-TYPE    311    167    296
D45V3, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              2              311
  CLUS_2              1              167
  CLUS_3              2              296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIMBP3 MUTATED        1      1      1      0      0
  RIMBP3 WILD-TYPE     94    110    141     63    185
D45V4, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              1              110
  CLUS_3              1              141
  CLUS_4              0               63
  CLUS_5              0              185
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMBP3 MUTATED        0      2      2      1
  RIMBP3 WILD-TYPE    163    159    168    174
D45V5, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              0              163
  CLUS_2              2              159
  CLUS_3              2              168
  CLUS_4              1              174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RIMBP3 MUTATED        2      0      1      0      0      1      1
  RIMBP3 WILD-TYPE    176     62    104    129     52     60     81
D45V6, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              0               62
  CLUS_3              1              104
  CLUS_4              0              129
  CLUS_5              0               52
  CLUS_6              1               60
  CLUS_7              1               81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMBP3 MUTATED        1      1      3      0
  RIMBP3 WILD-TYPE    106    178    230    262
D45V7, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              1              106
  CLUS_2              1              178
  CLUS_3              3              230
  CLUS_4              0              262
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RIMBP3 MUTATED        1      1      0      0      0      0      3      0
  RIMBP3 WILD-TYPE     83     49    122     77    107     32     87     52
                  vv
clus               CLUS_9
  RIMBP3 MUTATED        0
  RIMBP3 WILD-TYPE    167
D45V8, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               49
  CLUS_3              0              122
  CLUS_4              0               77
  CLUS_5              0              107
  CLUS_6              0               32
  CLUS_7              3               87
  CLUS_8              0               52
  CLUS_9              0              167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RIMBP3 MUTATED        1      2      1
  RIMBP3 WILD-TYPE    328    162    281
D45V9, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              1              328
  CLUS_2              2              162
  CLUS_3              1              281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMBP3 MUTATED        1      1      2      0
  RIMBP3 WILD-TYPE     72    299    196    204
D45V10, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              1              299
  CLUS_3              2              196
  CLUS_4              0              204
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMBP3 MUTATED        0      1      1      0
  RIMBP3 WILD-TYPE    155     65     55     96
D45V11, multiclass
[1] "Remove cluster labels:" "RIMBP3 MUTATED"        
clus
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               2              371 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J2       TCGA-2Z-A9J3 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-2Z-A9J5       TCGA-2Z-A9J6       TCGA-2Z-A9JD       TCGA-2Z-A9JG 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JK       TCGA-2Z-A9JL 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-2Z-A9JM       TCGA-2Z-A9JN       TCGA-2Z-A9JO       TCGA-2Z-A9JP 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-2Z-A9JQ       TCGA-2Z-A9JR       TCGA-2Z-A9JT       TCGA-4A-A93W 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JV       TCGA-5P-A9JW 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9JZ       TCGA-5P-A9K0       TCGA-5P-A9K6 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-5P-A9K8       TCGA-5P-A9KA       TCGA-5P-A9KC       TCGA-5P-A9KE 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-A4-A772 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-4700       TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-4852       TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-5399       TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B1-A47N       TCGA-B1-A47O       TCGA-B1-A654       TCGA-B1-A656 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-5633 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104       TCGA-B3-8121 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621       TCGA-B8-5545 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5155       TCGA-B9-5156 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B9-A8YI       TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4770       TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4968       TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4989       TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-5001       TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-7048       TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7836       TCGA-DW-7837 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DZ-6135       TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-F9-A7Q0       TCGA-F9-A8NY 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-F9-A97G       TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-G7-7502       TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-G7-A8LD       TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-GL-A9DC       TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-HE-A5NL       TCGA-IA-A40U 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IA-A83S       TCGA-IA-A83T 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-IA-A83V       TCGA-IA-A83W       TCGA-IZ-8195       TCGA-IZ-8196 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537       TCGA-J7-A8I2 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8323       TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8331       TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8335       TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8340       TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8344       TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KM-8441       TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8419       TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8426       TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8430       TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8434       TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8405 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KV-A74V       TCGA-MH-A854       TCGA-MH-A855       TCGA-MH-A856 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-MH-A857       TCGA-O9-A75Z       TCGA-P4-A5E6       TCGA-P4-A5E7 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-P4-A5E8       TCGA-P4-A5EA       TCGA-P4-AAVL       TCGA-P4-AAVM 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ       TCGA-SX-A71R 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-SX-A71S       TCGA-SX-A71U       TCGA-SX-A71W       TCGA-SX-A7SL 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-SX-A7SM       TCGA-SX-A7SN       TCGA-SX-A7SO       TCGA-SX-A7SP 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-SX-A7SR       TCGA-SX-A7SS       TCGA-SX-A7SU       TCGA-UZ-A9PJ 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PN       TCGA-UZ-A9PO 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PU       TCGA-UZ-A9PV 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-UZ-A9PX       TCGA-UZ-A9PZ       TCGA-V9-A7HT       TCGA-WN-A9G9 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-WN-AB4C       TCGA-Y8-A897       TCGA-Y8-A898       TCGA-Y8-A8RY 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RIMBP3 MUTATED        0      0      0      0      1      0      1
  RIMBP3 WILD-TYPE     90     73     50     19     36     58     45
D45V12, multiclass
[1] "Remove cluster labels:" "RIMBP3 MUTATED"        
clus
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               2              371 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J2       TCGA-2Z-A9J3 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-2Z-A9J5       TCGA-2Z-A9J6       TCGA-2Z-A9JD       TCGA-2Z-A9JG 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JK       TCGA-2Z-A9JL 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-2Z-A9JM       TCGA-2Z-A9JN       TCGA-2Z-A9JO       TCGA-2Z-A9JP 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-2Z-A9JQ       TCGA-2Z-A9JR       TCGA-2Z-A9JT       TCGA-4A-A93W 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JV       TCGA-5P-A9JW 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9JZ       TCGA-5P-A9K0       TCGA-5P-A9K6 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-5P-A9K8       TCGA-5P-A9KA       TCGA-5P-A9KC       TCGA-5P-A9KE 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-A4-A772 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-4700       TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-4852       TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-5399       TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B1-A47N       TCGA-B1-A47O       TCGA-B1-A654       TCGA-B1-A656 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-5633 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104       TCGA-B3-8121 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621       TCGA-B8-5545 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5155       TCGA-B9-5156 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-B9-A8YI       TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4770       TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4968       TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-4989       TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BP-5001       TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-7048       TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7836       TCGA-DW-7837 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DZ-6135       TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-F9-A7Q0       TCGA-F9-A8NY 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-F9-A97G       TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-G7-7502       TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-G7-A8LD       TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-GL-A9DC       TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-HE-A5NL       TCGA-IA-A40U 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IA-A83S       TCGA-IA-A83T 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-IA-A83V       TCGA-IA-A83W       TCGA-IZ-8195       TCGA-IZ-8196 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537       TCGA-J7-A8I2 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8323       TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8331       TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8335       TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8340       TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KL-8344       TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KM-8441       TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8419       TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8426       TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8430       TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KN-8434       TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8405 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8410       TCGA-KO-8413       TCGA-KO-8415 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-KV-A74V       TCGA-MH-A854       TCGA-MH-A855       TCGA-MH-A856 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-MH-A857       TCGA-O9-A75Z       TCGA-P4-A5E6       TCGA-P4-A5E7 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-P4-A5E8       TCGA-P4-A5EA       TCGA-P4-AAVL       TCGA-P4-AAVM 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ       TCGA-SX-A71R 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-SX-A71S       TCGA-SX-A71U       TCGA-SX-A71W       TCGA-SX-A7SL 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-SX-A7SM       TCGA-SX-A7SN       TCGA-SX-A7SO       TCGA-SX-A7SP 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-SX-A7SR       TCGA-SX-A7SS       TCGA-SX-A7SU       TCGA-UZ-A9PJ 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PN       TCGA-UZ-A9PO 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PU       TCGA-UZ-A9PV 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-UZ-A9PX       TCGA-UZ-A9PZ       TCGA-V9-A7HT       TCGA-WN-A9G9 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-WN-AB4C       TCGA-Y8-A897       TCGA-Y8-A898       TCGA-Y8-A8RY 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 

Clustering(46) Variable = FAT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED        0      1      0      0
  FAT1 WILD-TYPE     17     15     10     15
D46V1, multiclass
[1] "Remove cluster labels:" "FAT1 MUTATED"          
clus
  FAT1 MUTATED FAT1 WILD-TYPE 
             1             57 
    TCGA-A3-3311     TCGA-A3-3313     TCGA-A3-3317     TCGA-A3-3322 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3374     TCGA-AK-3427 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-AK-3456     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-AL-3468     TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B2-3923     TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B8-4143     TCGA-B8-4148     TCGA-B8-4151     TCGA-B8-4154 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B8-4619     TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-BP-4161     TCGA-BP-4162     TCGA-BP-4163     TCGA-BP-4164 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-BP-4167     TCGA-CJ-4634     TCGA-CJ-4636     TCGA-CJ-4637 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-CJ-4638     TCGA-CJ-4639     TCGA-CJ-4640     TCGA-CJ-4643 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-CJ-4644 
"FAT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAT1 MUTATED        0      1      0      0      0
  FAT1 WILD-TYPE      7     15     16     10      9
D46V2, multiclass
[1] "Remove cluster labels:" "FAT1 MUTATED"          
clus
  FAT1 MUTATED FAT1 WILD-TYPE 
             1             57 
    TCGA-A3-3311     TCGA-A3-3313     TCGA-A3-3317     TCGA-A3-3322 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3374     TCGA-AK-3427 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-AK-3456     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-AL-3468     TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B2-3923     TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B8-4143     TCGA-B8-4148     TCGA-B8-4151     TCGA-B8-4154 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B8-4619     TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-B9-4115     TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-BP-4161     TCGA-BP-4162     TCGA-BP-4163     TCGA-BP-4164 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-BP-4167     TCGA-CJ-4634     TCGA-CJ-4636     TCGA-CJ-4637 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-CJ-4638     TCGA-CJ-4639     TCGA-CJ-4640     TCGA-CJ-4643 
"FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" "FAT1 WILD-TYPE" 
    TCGA-CJ-4644 
"FAT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       11      1      8
  FAT1 WILD-TYPE    302    167    290
D46V3, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           11            302
  CLUS_2            1            167
  CLUS_3            8            290
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAT1 MUTATED        2      4      2      3      7
  FAT1 WILD-TYPE     93    107    140     60    178
D46V4, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            4            107
  CLUS_3            2            140
  CLUS_4            3             60
  CLUS_5            7            178
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED        4      5      5      4
  FAT1 WILD-TYPE    159    156    165    171
D46V5, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            4            159
  CLUS_2            5            156
  CLUS_3            5            165
  CLUS_4            4            171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAT1 MUTATED        5      3      2      1      1      2      4
  FAT1 WILD-TYPE    173     59    103    128     51     59     78
D46V6, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            3             59
  CLUS_3            2            103
  CLUS_4            1            128
  CLUS_5            1             51
  CLUS_6            2             59
  CLUS_7            4             78
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED        1      4      2     13
  FAT1 WILD-TYPE    106    175    231    249
D46V7, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            1            106
  CLUS_2            4            175
  CLUS_3            2            231
  CLUS_4           13            249
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FAT1 MUTATED        1      3      1      5      1      2      1      0      6
  FAT1 WILD-TYPE     83     47    121     72    106     30     89     52    161
D46V8, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            3             47
  CLUS_3            1            121
  CLUS_4            5             72
  CLUS_5            1            106
  CLUS_6            2             30
  CLUS_7            1             89
  CLUS_8            0             52
  CLUS_9            6            161
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED       12      5      3
  FAT1 WILD-TYPE    317    159    279
D46V9, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           12            317
  CLUS_2            5            159
  CLUS_3            3            279
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED        1     10      2      7
  FAT1 WILD-TYPE     72    290    196    197
D46V10, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            1             72
  CLUS_2           10            290
  CLUS_3            2            196
  CLUS_4            7            197
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED        6      3      1      1
  FAT1 WILD-TYPE    149     63     55     95
D46V11, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            6            149
  CLUS_2            3             63
  CLUS_3            1             55
  CLUS_4            1             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAT1 MUTATED        2      3      2      2      1      0      1
  FAT1 WILD-TYPE     88     70     48     17     36     58     45
D46V12, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            2             88
  CLUS_2            3             70
  CLUS_3            2             48
  CLUS_4            2             17
  CLUS_5            1             36
  CLUS_6            0             58
  CLUS_7            1             45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = FAM178A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM178A MUTATED        0      0      0      0
  FAM178A WILD-TYPE     17     16     10     15
D47V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM178A MUTATED        0      0      0      0      0
  FAM178A WILD-TYPE      7     16     16     10      9
D47V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM178A MUTATED        2      0      6
  FAM178A WILD-TYPE    311    168    292
D47V3, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               2               311
  CLUS_2               0               168
  CLUS_3               6               292
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM178A MUTATED        1      1      2      1      2
  FAM178A WILD-TYPE     94    110    140     62    183
D47V4, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1               110
  CLUS_3               2               140
  CLUS_4               1                62
  CLUS_5               2               183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM178A MUTATED        2      2      0      2
  FAM178A WILD-TYPE    161    159    170    173
D47V5, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               2               161
  CLUS_2               2               159
  CLUS_3               0               170
  CLUS_4               2               173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM178A MUTATED        1      0      1      2      0      0      2
  FAM178A WILD-TYPE    177     62    104    127     52     61     80
D47V6, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               1               177
  CLUS_2               0                62
  CLUS_3               1               104
  CLUS_4               2               127
  CLUS_5               0                52
  CLUS_6               0                61
  CLUS_7               2                80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM178A MUTATED        0      3      1      4
  FAM178A WILD-TYPE    107    176    232    258
D47V7, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               0               107
  CLUS_2               3               176
  CLUS_3               1               232
  CLUS_4               4               258
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM178A MUTATED        0      1      1      1      1      1      1      0
  FAM178A WILD-TYPE     84     49    121     76    106     31     89     52
                   vv
clus                CLUS_9
  FAM178A MUTATED        2
  FAM178A WILD-TYPE    165
D47V8, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                49
  CLUS_3               1               121
  CLUS_4               1                76
  CLUS_5               1               106
  CLUS_6               1                31
  CLUS_7               1                89
  CLUS_8               0                52
  CLUS_9               2               165
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM178A MUTATED        4      2      2
  FAM178A WILD-TYPE    325    162    280
D47V9, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               4               325
  CLUS_2               2               162
  CLUS_3               2               280
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM178A MUTATED        0      4      2      2
  FAM178A WILD-TYPE     73    296    196    202
D47V10, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               0                73
  CLUS_2               4               296
  CLUS_3               2               196
  CLUS_4               2               202
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM178A MUTATED        1      0      0      0
  FAM178A WILD-TYPE    154     66     56     96
D47V11, multiclass
[1] "Remove cluster labels:" "FAM178A MUTATED"       
clus
  FAM178A MUTATED FAM178A WILD-TYPE 
                1               372 
       TCGA-2K-A9WE        TCGA-2Z-A9J1        TCGA-2Z-A9J2        TCGA-2Z-A9J3 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-2Z-A9J5        TCGA-2Z-A9J6        TCGA-2Z-A9JD        TCGA-2Z-A9JG 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-2Z-A9JI        TCGA-2Z-A9JJ        TCGA-2Z-A9JK        TCGA-2Z-A9JL 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-2Z-A9JM        TCGA-2Z-A9JN        TCGA-2Z-A9JO        TCGA-2Z-A9JP 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-2Z-A9JQ        TCGA-2Z-A9JR        TCGA-2Z-A9JT        TCGA-4A-A93W 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-4A-A93X        TCGA-4A-A93Y        TCGA-5P-A9JV        TCGA-5P-A9JW 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-5P-A9JY        TCGA-5P-A9JZ        TCGA-5P-A9K0        TCGA-5P-A9K6 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-5P-A9K8        TCGA-5P-A9KA        TCGA-5P-A9KC        TCGA-5P-A9KE 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-A4-7286 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7585        TCGA-A4-7734 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8312        TCGA-A4-8515 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630        TCGA-A4-A57E 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-A4-A772 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-AK-3440        TCGA-AK-3458        TCGA-AK-3465        TCGA-AL-3466 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AL-7173        TCGA-B0-4700 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712        TCGA-B0-4810 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B0-4811        TCGA-B0-4836        TCGA-B0-4837        TCGA-B0-4852 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B0-5080        TCGA-B0-5085        TCGA-B0-5088        TCGA-B0-5399 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5699        TCGA-B0-5702 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5709        TCGA-B1-5398        TCGA-B1-A47N 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B1-A47O        TCGA-B1-A654        TCGA-B1-A656        TCGA-B1-A657 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B2-3923        TCGA-B2-3924        TCGA-B2-5633        TCGA-B2-5635 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B3-3925        TCGA-B3-4104        TCGA-B3-8121        TCGA-B4-5377 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B4-5836        TCGA-B8-4621        TCGA-B8-5545        TCGA-B8-5550 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B8-5551        TCGA-B8-5552        TCGA-B8-5553        TCGA-B9-4115 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B9-4117        TCGA-B9-5155        TCGA-B9-5156        TCGA-B9-A44B 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B9-A5W9        TCGA-B9-A69E        TCGA-B9-A8YH        TCGA-B9-A8YI 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BP-4173        TCGA-BP-4340        TCGA-BP-4761        TCGA-BP-4770 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BP-4787        TCGA-BP-4789        TCGA-BP-4790        TCGA-BP-4804 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BP-4807        TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BP-4970        TCGA-BP-4974        TCGA-BP-4976        TCGA-BP-4981 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BP-4982        TCGA-BP-4985        TCGA-BP-4988        TCGA-BP-4989 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BP-4992        TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5001 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BP-5008        TCGA-BP-5009        TCGA-BQ-5876        TCGA-BQ-5877 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-5878        TCGA-BQ-5879        TCGA-BQ-5880        TCGA-BQ-5881 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-5882        TCGA-BQ-5883        TCGA-BQ-5884        TCGA-BQ-5886 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-5887        TCGA-BQ-5888        TCGA-BQ-5889        TCGA-BQ-5890 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-5891        TCGA-BQ-5892        TCGA-BQ-5893        TCGA-BQ-5894 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-7044        TCGA-BQ-7045        TCGA-BQ-7046        TCGA-BQ-7048 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-7049        TCGA-BQ-7050        TCGA-BQ-7051        TCGA-BQ-7053 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-7055        TCGA-BQ-7056        TCGA-BQ-7058        TCGA-BQ-7059 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062        TCGA-CJ-4870 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CJ-4875        TCGA-CJ-4876        TCGA-CJ-4878        TCGA-CJ-4881 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CJ-4887        TCGA-CJ-4889        TCGA-CJ-4890        TCGA-CJ-4895 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CJ-4900        TCGA-CJ-5671        TCGA-CJ-5675        TCGA-CJ-5676 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CJ-5681        TCGA-CJ-5683        TCGA-CJ-5686        TCGA-CJ-6031 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CJ-6032        TCGA-CW-5585        TCGA-CW-5589        TCGA-CW-6087 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CZ-4854        TCGA-CZ-4857        TCGA-CZ-4858        TCGA-CZ-5453 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CZ-5454        TCGA-CZ-5455        TCGA-CZ-5457        TCGA-CZ-5459 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CZ-5462        TCGA-CZ-5463        TCGA-CZ-5466        TCGA-CZ-5467 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5989        TCGA-DV-5565 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-DV-5566        TCGA-DV-5569        TCGA-DW-5560        TCGA-DW-5561 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-DW-7834        TCGA-DW-7836        TCGA-DW-7837        TCGA-DW-7838 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-DW-7839        TCGA-DW-7840        TCGA-DW-7842        TCGA-DZ-6131 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-DZ-6132        TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-EU-5904        TCGA-EV-5901        TCGA-EV-5902        TCGA-EV-5903 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-F9-A4JJ        TCGA-F9-A7Q0        TCGA-F9-A8NY        TCGA-F9-A97G 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792        TCGA-G7-6793 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-7501        TCGA-G7-7502 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-G7-A4TM        TCGA-G7-A8LB        TCGA-G7-A8LC        TCGA-G7-A8LD 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-G7-A8LE        TCGA-GL-6846        TCGA-GL-7773        TCGA-GL-7966 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59T        TCGA-GL-A9DC 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-GL-A9DD        TCGA-GL-A9DE        TCGA-HE-7128        TCGA-HE-7130 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-HE-A5NJ        TCGA-HE-A5NL        TCGA-IA-A40U        TCGA-IA-A40X 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-IA-A40Y        TCGA-IA-A83S        TCGA-IA-A83T        TCGA-IA-A83V 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-IA-A83W        TCGA-IZ-8195        TCGA-IZ-8196        TCGA-IZ-A6M9 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-J7-6720        TCGA-J7-8537        TCGA-J7-A8I2        TCGA-KL-8323 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KL-8324        TCGA-KL-8327        TCGA-KL-8328        TCGA-KL-8331 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KL-8332        TCGA-KL-8333        TCGA-KL-8334        TCGA-KL-8335 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KL-8336        TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KL-8341        TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KL-8345        TCGA-KM-8438        TCGA-KM-8439        TCGA-KM-8441 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KM-8442        TCGA-KM-8639        TCGA-KN-8418        TCGA-KN-8419 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KN-8422        TCGA-KN-8423        TCGA-KN-8424        TCGA-KN-8426 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KN-8427        TCGA-KN-8428        TCGA-KN-8429        TCGA-KN-8430 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KN-8431        TCGA-KN-8432        TCGA-KN-8433        TCGA-KN-8434 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KN-8436        TCGA-KN-8437        TCGA-KO-8404        TCGA-KO-8405 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KO-8408        TCGA-KO-8409        TCGA-KO-8410        TCGA-KO-8413 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KO-8415        TCGA-KO-8416        TCGA-KO-8417        TCGA-KV-A6GD 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KV-A6GE        TCGA-KV-A74V        TCGA-MH-A854        TCGA-MH-A855 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-MH-A856        TCGA-MH-A857        TCGA-O9-A75Z        TCGA-P4-A5E6 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-P4-A5E7        TCGA-P4-A5E8        TCGA-P4-A5EA        TCGA-P4-AAVL 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-P4-AAVM        TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-SX-A71R        TCGA-SX-A71S        TCGA-SX-A71U        TCGA-SX-A71W 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-SX-A7SL        TCGA-SX-A7SM        TCGA-SX-A7SN        TCGA-SX-A7SO 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-SX-A7SP        TCGA-SX-A7SR        TCGA-SX-A7SS        TCGA-SX-A7SU 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-UZ-A9PJ        TCGA-UZ-A9PK        TCGA-UZ-A9PL        TCGA-UZ-A9PN 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-UZ-A9PO        TCGA-UZ-A9PP        TCGA-UZ-A9PR        TCGA-UZ-A9PU 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-UZ-A9PV        TCGA-UZ-A9PX        TCGA-UZ-A9PZ        TCGA-V9-A7HT 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-WN-A9G9        TCGA-WN-AB4C        TCGA-Y8-A897        TCGA-Y8-A898 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-Y8-A8RY        TCGA-Y8-A8RZ        TCGA-Y8-A8S0        TCGA-Y8-A8S1 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM178A MUTATED        0      0      1      0      0      0      0
  FAM178A WILD-TYPE     90     73     49     19     37     58     46
D47V12, multiclass
[1] "Remove cluster labels:" "FAM178A MUTATED"       
clus
  FAM178A MUTATED FAM178A WILD-TYPE 
                1               372 
       TCGA-2K-A9WE        TCGA-2Z-A9J1        TCGA-2Z-A9J2        TCGA-2Z-A9J3 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-2Z-A9J5        TCGA-2Z-A9J6        TCGA-2Z-A9JD        TCGA-2Z-A9JG 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-2Z-A9JI        TCGA-2Z-A9JJ        TCGA-2Z-A9JK        TCGA-2Z-A9JL 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-2Z-A9JM        TCGA-2Z-A9JN        TCGA-2Z-A9JO        TCGA-2Z-A9JP 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-2Z-A9JQ        TCGA-2Z-A9JR        TCGA-2Z-A9JT        TCGA-4A-A93W 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-4A-A93X        TCGA-4A-A93Y        TCGA-5P-A9JV        TCGA-5P-A9JW 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-5P-A9JY        TCGA-5P-A9JZ        TCGA-5P-A9K0        TCGA-5P-A9K6 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-5P-A9K8        TCGA-5P-A9KA        TCGA-5P-A9KC        TCGA-5P-A9KE 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-A4-7286 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7585        TCGA-A4-7734 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8312        TCGA-A4-8515 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630        TCGA-A4-A57E 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-A4-A772 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-AK-3440        TCGA-AK-3458        TCGA-AK-3465        TCGA-AL-3466 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AL-7173        TCGA-B0-4700 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712        TCGA-B0-4810 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B0-4811        TCGA-B0-4836        TCGA-B0-4837        TCGA-B0-4852 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B0-5080        TCGA-B0-5085        TCGA-B0-5088        TCGA-B0-5399 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693        TCGA-B0-5694 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5699        TCGA-B0-5702 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B0-5705        TCGA-B0-5709        TCGA-B1-5398        TCGA-B1-A47N 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B1-A47O        TCGA-B1-A654        TCGA-B1-A656        TCGA-B1-A657 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B2-3923        TCGA-B2-3924        TCGA-B2-5633        TCGA-B2-5635 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B3-3925        TCGA-B3-4104        TCGA-B3-8121        TCGA-B4-5377 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B4-5836        TCGA-B8-4621        TCGA-B8-5545        TCGA-B8-5550 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B8-5551        TCGA-B8-5552        TCGA-B8-5553        TCGA-B9-4115 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B9-4117        TCGA-B9-5155        TCGA-B9-5156        TCGA-B9-A44B 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-B9-A5W9        TCGA-B9-A69E        TCGA-B9-A8YH        TCGA-B9-A8YI 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BP-4173        TCGA-BP-4340        TCGA-BP-4761        TCGA-BP-4770 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BP-4787        TCGA-BP-4789        TCGA-BP-4790        TCGA-BP-4804 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BP-4807        TCGA-BP-4961        TCGA-BP-4967        TCGA-BP-4968 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BP-4970        TCGA-BP-4974        TCGA-BP-4976        TCGA-BP-4981 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BP-4982        TCGA-BP-4985        TCGA-BP-4988        TCGA-BP-4989 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BP-4992        TCGA-BP-4995        TCGA-BP-4998        TCGA-BP-5001 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BP-5008        TCGA-BP-5009        TCGA-BQ-5876        TCGA-BQ-5877 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-5878        TCGA-BQ-5879        TCGA-BQ-5880        TCGA-BQ-5881 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-5882        TCGA-BQ-5883        TCGA-BQ-5884        TCGA-BQ-5886 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-5887        TCGA-BQ-5888        TCGA-BQ-5889        TCGA-BQ-5890 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-5891        TCGA-BQ-5892        TCGA-BQ-5893        TCGA-BQ-5894 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-7044        TCGA-BQ-7045        TCGA-BQ-7046        TCGA-BQ-7048 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-7049        TCGA-BQ-7050        TCGA-BQ-7051        TCGA-BQ-7053 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-7055        TCGA-BQ-7056        TCGA-BQ-7058        TCGA-BQ-7059 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062        TCGA-CJ-4870 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CJ-4875        TCGA-CJ-4876        TCGA-CJ-4878        TCGA-CJ-4881 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CJ-4887        TCGA-CJ-4889        TCGA-CJ-4890        TCGA-CJ-4895 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CJ-4900        TCGA-CJ-5671        TCGA-CJ-5675        TCGA-CJ-5676 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CJ-5681        TCGA-CJ-5683        TCGA-CJ-5686        TCGA-CJ-6031 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CJ-6032        TCGA-CW-5585        TCGA-CW-5589        TCGA-CW-6087 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CZ-4854        TCGA-CZ-4857        TCGA-CZ-4858        TCGA-CZ-5453 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CZ-5454        TCGA-CZ-5455        TCGA-CZ-5457        TCGA-CZ-5459 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CZ-5462        TCGA-CZ-5463        TCGA-CZ-5466        TCGA-CZ-5467 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5989        TCGA-DV-5565 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-DV-5566        TCGA-DV-5569        TCGA-DW-5560        TCGA-DW-5561 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-DW-7834        TCGA-DW-7836        TCGA-DW-7837        TCGA-DW-7838 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-DW-7839        TCGA-DW-7840        TCGA-DW-7842        TCGA-DZ-6131 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-DZ-6132        TCGA-DZ-6133        TCGA-DZ-6134        TCGA-DZ-6135 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-EU-5904        TCGA-EV-5901        TCGA-EV-5902        TCGA-EV-5903 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-F9-A4JJ        TCGA-F9-A7Q0        TCGA-F9-A8NY        TCGA-F9-A97G 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792        TCGA-G7-6793 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-7501        TCGA-G7-7502 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-G7-A4TM        TCGA-G7-A8LB        TCGA-G7-A8LC        TCGA-G7-A8LD 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-G7-A8LE        TCGA-GL-6846        TCGA-GL-7773        TCGA-GL-7966 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59T        TCGA-GL-A9DC 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-GL-A9DD        TCGA-GL-A9DE        TCGA-HE-7128        TCGA-HE-7130 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-HE-A5NJ        TCGA-HE-A5NL        TCGA-IA-A40U        TCGA-IA-A40X 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-IA-A40Y        TCGA-IA-A83S        TCGA-IA-A83T        TCGA-IA-A83V 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-IA-A83W        TCGA-IZ-8195        TCGA-IZ-8196        TCGA-IZ-A6M9 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-J7-6720        TCGA-J7-8537        TCGA-J7-A8I2        TCGA-KL-8323 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KL-8324        TCGA-KL-8327        TCGA-KL-8328        TCGA-KL-8331 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KL-8332        TCGA-KL-8333        TCGA-KL-8334        TCGA-KL-8335 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KL-8336        TCGA-KL-8338        TCGA-KL-8339        TCGA-KL-8340 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KL-8341        TCGA-KL-8342        TCGA-KL-8343        TCGA-KL-8344 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KL-8345        TCGA-KM-8438        TCGA-KM-8439        TCGA-KM-8441 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KM-8442        TCGA-KM-8639        TCGA-KN-8418        TCGA-KN-8419 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KN-8422        TCGA-KN-8423        TCGA-KN-8424        TCGA-KN-8426 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KN-8427        TCGA-KN-8428        TCGA-KN-8429        TCGA-KN-8430 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KN-8431        TCGA-KN-8432        TCGA-KN-8433        TCGA-KN-8434 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KN-8436        TCGA-KN-8437        TCGA-KO-8404        TCGA-KO-8405 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KO-8408        TCGA-KO-8409        TCGA-KO-8410        TCGA-KO-8413 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KO-8415        TCGA-KO-8416        TCGA-KO-8417        TCGA-KV-A6GD 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-KV-A6GE        TCGA-KV-A74V        TCGA-MH-A854        TCGA-MH-A855 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-MH-A856        TCGA-MH-A857        TCGA-O9-A75Z        TCGA-P4-A5E6 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-P4-A5E7        TCGA-P4-A5E8        TCGA-P4-A5EA        TCGA-P4-AAVL 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-P4-AAVM        TCGA-PJ-A5Z8        TCGA-PJ-A5Z9        TCGA-Q2-A5QZ 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-SX-A71R        TCGA-SX-A71S        TCGA-SX-A71U        TCGA-SX-A71W 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-SX-A7SL        TCGA-SX-A7SM        TCGA-SX-A7SN        TCGA-SX-A7SO 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-SX-A7SP        TCGA-SX-A7SR        TCGA-SX-A7SS        TCGA-SX-A7SU 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-UZ-A9PJ        TCGA-UZ-A9PK        TCGA-UZ-A9PL        TCGA-UZ-A9PN 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-UZ-A9PO        TCGA-UZ-A9PP        TCGA-UZ-A9PR        TCGA-UZ-A9PU 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-UZ-A9PV        TCGA-UZ-A9PX        TCGA-UZ-A9PZ        TCGA-V9-A7HT 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-WN-A9G9        TCGA-WN-AB4C        TCGA-Y8-A897        TCGA-Y8-A898 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 
       TCGA-Y8-A8RY        TCGA-Y8-A8RZ        TCGA-Y8-A8S0        TCGA-Y8-A8S1 
"FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" "FAM178A WILD-TYPE" 

Clustering(48) Variable = TCEB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB1 MUTATED        0      0      0      0
  TCEB1 WILD-TYPE     17     16     10     15
D48V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCEB1 MUTATED        0      0      0      0      0
  TCEB1 WILD-TYPE      7     16     16     10      9
D48V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        3      1      0
  TCEB1 WILD-TYPE    310    167    298
D48V3, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             3             310
  CLUS_2             1             167
  CLUS_3             0             298
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCEB1 MUTATED        0      0      2      0      0
  TCEB1 WILD-TYPE     95    111    140     63    185
D48V4, multiclass
[1] "Remove cluster labels:" "TCEB1 MUTATED"         
clus
  TCEB1 MUTATED TCEB1 WILD-TYPE 
              2             594 
     TCGA-2K-A9WE      TCGA-2Z-A9J1      TCGA-2Z-A9J2      TCGA-2Z-A9J3 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-2Z-A9J5      TCGA-2Z-A9J6      TCGA-2Z-A9J7      TCGA-2Z-A9J8 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-2Z-A9JD      TCGA-2Z-A9JE      TCGA-2Z-A9JG      TCGA-2Z-A9JI 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-2Z-A9JJ      TCGA-2Z-A9JK      TCGA-2Z-A9JL      TCGA-2Z-A9JM 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-2Z-A9JN      TCGA-2Z-A9JO      TCGA-2Z-A9JP      TCGA-2Z-A9JQ 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-2Z-A9JR      TCGA-2Z-A9JS      TCGA-2Z-A9JT      TCGA-4A-A93W 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-4A-A93X      TCGA-4A-A93Y      TCGA-5P-A9JU      TCGA-5P-A9JW 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-5P-A9JY      TCGA-5P-A9JZ      TCGA-5P-A9K0      TCGA-5P-A9K2 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-5P-A9K3      TCGA-5P-A9K6      TCGA-5P-A9K8      TCGA-5P-A9KA 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-5P-A9KC      TCGA-5P-A9KE      TCGA-5P-A9KH      TCGA-A3-3357 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A3-3358      TCGA-A3-3367      TCGA-A3-3370      TCGA-A3-3373 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A3-3376      TCGA-A3-3385      TCGA-A3-3387      TCGA-A4-7286 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7583      TCGA-A4-7584 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-7585      TCGA-A4-7732      TCGA-A4-7734      TCGA-A4-7828 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997      TCGA-A4-8098 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-8310      TCGA-A4-8311      TCGA-A4-8312      TCGA-A4-8515 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A48D 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-A4ZT      TCGA-A4-A57E      TCGA-A4-A5DU      TCGA-A4-A5XZ 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-A4-A6HP      TCGA-A4-A772 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-A4-A7UZ      TCGA-AK-3425      TCGA-AK-3428      TCGA-AK-3431 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AK-3434      TCGA-AK-3440      TCGA-AK-3445      TCGA-AK-3450 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AK-3453      TCGA-AK-3454      TCGA-AK-3458      TCGA-AK-3460 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-AK-3461      TCGA-AL-7173      TCGA-AL-A5DJ      TCGA-AT-A5NU 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4690      TCGA-B0-4691      TCGA-B0-4693      TCGA-B0-4694 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4697      TCGA-B0-4700      TCGA-B0-4703      TCGA-B0-4706 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4707      TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4713 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4714      TCGA-B0-4718      TCGA-B0-4810      TCGA-B0-4811 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4813      TCGA-B0-4814      TCGA-B0-4815      TCGA-B0-4816 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4817      TCGA-B0-4818      TCGA-B0-4819      TCGA-B0-4822 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4823      TCGA-B0-4824      TCGA-B0-4827      TCGA-B0-4828 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4841      TCGA-B0-4842      TCGA-B0-4843      TCGA-B0-4844 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4845      TCGA-B0-4846      TCGA-B0-4847      TCGA-B0-4848 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-4849      TCGA-B0-4852      TCGA-B0-4945      TCGA-B0-5080 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5083      TCGA-B0-5092      TCGA-B0-5094      TCGA-B0-5095 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5096      TCGA-B0-5097      TCGA-B0-5098      TCGA-B0-5099 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5100      TCGA-B0-5102      TCGA-B0-5104      TCGA-B0-5106 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5107      TCGA-B0-5108      TCGA-B0-5109      TCGA-B0-5110 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5113      TCGA-B0-5115      TCGA-B0-5116      TCGA-B0-5117 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5119      TCGA-B0-5120      TCGA-B0-5121      TCGA-B0-5399 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5400      TCGA-B0-5402      TCGA-B0-5691      TCGA-B0-5692 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5693      TCGA-B0-5694      TCGA-B0-5695      TCGA-B0-5696 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5697      TCGA-B0-5698      TCGA-B0-5699      TCGA-B0-5701 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5702      TCGA-B0-5703      TCGA-B0-5705      TCGA-B0-5706 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5707      TCGA-B0-5709      TCGA-B0-5710      TCGA-B0-5711 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B0-5712      TCGA-B0-5713      TCGA-B0-5812      TCGA-B1-5398 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B1-7332      TCGA-B1-A47M      TCGA-B1-A47N      TCGA-B1-A47O 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A655      TCGA-B1-A656      TCGA-B1-A657 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-4101      TCGA-B2-5633      TCGA-B2-5635 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B2-5641      TCGA-B3-8121      TCGA-B3-A6W5      TCGA-B4-5377 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B4-5832      TCGA-B4-5834      TCGA-B4-5835      TCGA-B4-5836 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B4-5838      TCGA-B4-5843      TCGA-B4-5844      TCGA-B8-4146 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-4153      TCGA-B8-4621      TCGA-B8-4622      TCGA-B8-5158 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5159      TCGA-B8-5162      TCGA-B8-5163      TCGA-B8-5164 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5165      TCGA-B8-5546      TCGA-B8-5549      TCGA-B8-5550 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B8-5551      TCGA-B8-5552      TCGA-B8-5553      TCGA-B9-5155 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B9-5156      TCGA-B9-7268      TCGA-B9-A44B      TCGA-B9-A5W7 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B9-A5W8      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-B9-A8YH 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-B9-A8YI      TCGA-BP-4177      TCGA-BP-4760      TCGA-BP-4770 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-4782      TCGA-BP-4795      TCGA-BP-4801      TCGA-BP-4993 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5010      TCGA-BP-5168      TCGA-BP-5169      TCGA-BP-5170 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5173      TCGA-BP-5174      TCGA-BP-5175      TCGA-BP-5176 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5177      TCGA-BP-5178      TCGA-BP-5180      TCGA-BP-5181 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5182      TCGA-BP-5183      TCGA-BP-5184      TCGA-BP-5185 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5186      TCGA-BP-5187      TCGA-BP-5189      TCGA-BP-5190 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5191      TCGA-BP-5192      TCGA-BP-5194      TCGA-BP-5195 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5196      TCGA-BP-5198      TCGA-BP-5199      TCGA-BP-5200 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BP-5201      TCGA-BP-5202      TCGA-BQ-5875      TCGA-BQ-5876 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5877      TCGA-BQ-5878      TCGA-BQ-5879      TCGA-BQ-5880 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5881      TCGA-BQ-5882      TCGA-BQ-5883      TCGA-BQ-5884 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5885      TCGA-BQ-5886      TCGA-BQ-5887      TCGA-BQ-5888 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5889      TCGA-BQ-5890      TCGA-BQ-5891      TCGA-BQ-5892 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-5893      TCGA-BQ-5894      TCGA-BQ-7044      TCGA-BQ-7045 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-7046      TCGA-BQ-7048      TCGA-BQ-7049      TCGA-BQ-7050 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-7051      TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7056 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-7058      TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-BQ-7062      TCGA-CJ-4869      TCGA-CJ-4882      TCGA-CJ-4897 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4901      TCGA-CJ-4902      TCGA-CJ-4903      TCGA-CJ-4904 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4905      TCGA-CJ-4907      TCGA-CJ-4908      TCGA-CJ-4912 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4913      TCGA-CJ-4916      TCGA-CJ-4918      TCGA-CJ-4920 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-4923      TCGA-CJ-5671      TCGA-CJ-5672      TCGA-CJ-5675 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5677      TCGA-CJ-5678      TCGA-CJ-5679 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5680      TCGA-CJ-5681      TCGA-CJ-5682      TCGA-CJ-5683 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-5684      TCGA-CJ-5686      TCGA-CJ-6027      TCGA-CJ-6028 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CJ-6030      TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CJ-6033 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-5580      TCGA-CW-5581      TCGA-CW-5583      TCGA-CW-5585 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-5588      TCGA-CW-5589      TCGA-CW-5591      TCGA-CW-6087 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CW-6090      TCGA-CW-6093      TCGA-CW-6097      TCGA-CZ-4853 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-4856      TCGA-CZ-4859      TCGA-CZ-4863      TCGA-CZ-4865 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-4866      TCGA-CZ-5451      TCGA-CZ-5452      TCGA-CZ-5453 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5456      TCGA-CZ-5457 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5458      TCGA-CZ-5459      TCGA-CZ-5460      TCGA-CZ-5461 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5465      TCGA-CZ-5466 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5468      TCGA-CZ-5469      TCGA-CZ-5470 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5982      TCGA-CZ-5984      TCGA-CZ-5985      TCGA-CZ-5986 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-CZ-5987      TCGA-CZ-5988      TCGA-CZ-5989      TCGA-DV-5565 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5566      TCGA-DV-5568      TCGA-DV-5569      TCGA-DV-5574 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DV-5575      TCGA-DV-5576      TCGA-DW-5560      TCGA-DW-5561 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DW-7834      TCGA-DW-7836      TCGA-DW-7837      TCGA-DW-7838 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7841      TCGA-DW-7842 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DW-7963      TCGA-DZ-6131      TCGA-DZ-6132      TCGA-DZ-6133 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-DZ-6134      TCGA-DZ-6135      TCGA-EU-5904      TCGA-EU-5905 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-EU-5906      TCGA-EU-5907      TCGA-EV-5901      TCGA-EV-5902 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-EV-5903      TCGA-F9-A4JJ      TCGA-F9-A7Q0      TCGA-F9-A7VF 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-F9-A8NY      TCGA-F9-A97G      TCGA-G7-6789      TCGA-G7-6790 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-G7-6792      TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-G7-6797      TCGA-G7-7501      TCGA-G7-7502      TCGA-G7-A4TM 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-G7-A8LB      TCGA-G7-A8LC      TCGA-G7-A8LD      TCGA-G7-A8LE 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-GL-6846      TCGA-GL-7773      TCGA-GL-7966      TCGA-GL-8500 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-GL-A4EM      TCGA-GL-A59R      TCGA-GL-A59T      TCGA-GL-A9DC 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-GL-A9DD      TCGA-GL-A9DE      TCGA-HE-7128      TCGA-HE-7129 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-HE-7130      TCGA-HE-A5NF      TCGA-HE-A5NH      TCGA-HE-A5NI 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-HE-A5NJ      TCGA-HE-A5NK      TCGA-HE-A5NL      TCGA-IA-A40U 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IA-A83S      TCGA-IA-A83T 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-IA-A83V      TCGA-IA-A83W      TCGA-IZ-8195      TCGA-IZ-8196 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-IZ-A6M8      TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-J7-A8I2      TCGA-KL-8323      TCGA-KL-8324      TCGA-KL-8325 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8326      TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8329 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8330      TCGA-KL-8331      TCGA-KL-8332      TCGA-KL-8333 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8334      TCGA-KL-8335      TCGA-KL-8336      TCGA-KL-8337 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340      TCGA-KL-8341 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344      TCGA-KL-8345 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KL-8346      TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8440 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KM-8441      TCGA-KM-8442      TCGA-KM-8443      TCGA-KM-8476 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KM-8477      TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8421      TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8425      TCGA-KN-8426      TCGA-KN-8427      TCGA-KN-8428 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8429      TCGA-KN-8430      TCGA-KN-8431      TCGA-KN-8432 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8433      TCGA-KN-8434      TCGA-KN-8435      TCGA-KN-8436 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KN-8437      TCGA-KO-8403      TCGA-KO-8404      TCGA-KO-8405 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KO-8406      TCGA-KO-8407      TCGA-KO-8408      TCGA-KO-8409 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KO-8410      TCGA-KO-8411      TCGA-KO-8413      TCGA-KO-8414 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KO-8415      TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-KV-A6GE      TCGA-KV-A74V      TCGA-MH-A55W      TCGA-MH-A55Z 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-MH-A560      TCGA-MH-A561      TCGA-MH-A562      TCGA-MH-A854 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-MH-A855      TCGA-MH-A856      TCGA-MH-A857      TCGA-O9-A75Z 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-P4-A5EB      TCGA-P4-A5ED      TCGA-P4-AAVL      TCGA-P4-AAVM 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-PJ-A8JU      TCGA-Q2-A5QZ 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-SX-A71R      TCGA-SX-A71S      TCGA-SX-A71U      TCGA-SX-A71V 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-SX-A71W      TCGA-SX-A7SL      TCGA-SX-A7SM      TCGA-SX-A7SN 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-SX-A7SO      TCGA-SX-A7SP      TCGA-SX-A7SQ      TCGA-SX-A7SR 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-SX-A7SS      TCGA-SX-A7SU      TCGA-UN-AAZ9      TCGA-UZ-A9PJ 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-UZ-A9PK      TCGA-UZ-A9PL      TCGA-UZ-A9PM      TCGA-UZ-A9PN 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-UZ-A9PO      TCGA-UZ-A9PP      TCGA-UZ-A9PR      TCGA-UZ-A9PS 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-UZ-A9PU      TCGA-UZ-A9PV      TCGA-UZ-A9PX      TCGA-UZ-A9PZ 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-UZ-A9Q0      TCGA-UZ-A9Q1      TCGA-V9-A7HT      TCGA-WN-A9G9 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-WN-AB4C      TCGA-Y8-A894      TCGA-Y8-A895      TCGA-Y8-A896 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-Y8-A897      TCGA-Y8-A898      TCGA-Y8-A8RY      TCGA-Y8-A8RZ 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
     TCGA-Y8-A8S0      TCGA-Y8-A8S1 
"TCEB1 WILD-TYPE" "TCEB1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB1 MUTATED        2      1      0      0
  TCEB1 WILD-TYPE    161    160    170    175
D48V5, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             2             161
  CLUS_2             1             160
  CLUS_3             0             170
  CLUS_4             0             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TCEB1 MUTATED        1      0      0      0      0      0      2
  TCEB1 WILD-TYPE    177     62    105    129     52     61     80
D48V6, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             1             177
  CLUS_2             0              62
  CLUS_3             0             105
  CLUS_4             0             129
  CLUS_5             0              52
  CLUS_6             0              61
  CLUS_7             2              80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB1 MUTATED        0      2      2      0
  TCEB1 WILD-TYPE    107    177    231    262
D48V7, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0             107
  CLUS_2             2             177
  CLUS_3             2             231
  CLUS_4             0             262
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TCEB1 MUTATED        0      0      0      0      0      0      1      3
  TCEB1 WILD-TYPE     84     50    122     77    107     32     89     49
                 vv
clus              CLUS_9
  TCEB1 MUTATED        0
  TCEB1 WILD-TYPE    167
D48V8, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              50
  CLUS_3             0             122
  CLUS_4             0              77
  CLUS_5             0             107
  CLUS_6             0              32
  CLUS_7             1              89
  CLUS_8             3              49
  CLUS_9             0             167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB1 MUTATED        0      3      1
  TCEB1 WILD-TYPE    329    161    281
D48V9, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0             329
  CLUS_2             3             161
  CLUS_3             1             281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB1 MUTATED        0      4      0      0
  TCEB1 WILD-TYPE     73    296    198    204
D48V10, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0              73
  CLUS_2             4             296
  CLUS_3             0             198
  CLUS_4             0             204
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB1 MUTATED        0      0      1      2
  TCEB1 WILD-TYPE    155     66     55     94
D48V11, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0             155
  CLUS_2             0              66
  CLUS_3             1              55
  CLUS_4             2              94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TCEB1 MUTATED        0      0      0      0      3      0      0
  TCEB1 WILD-TYPE     90     73     50     19     34     58     46
D48V12, multiclass
        clus
vv       TCEB1 MUTATED TCEB1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             0              73
  CLUS_3             0              50
  CLUS_4             0              19
  CLUS_5             3              34
  CLUS_6             0              58
  CLUS_7             0              46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = PODXL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODXL MUTATED        0      1      0      0
  PODXL WILD-TYPE     17     15     10     15
D49V1, multiclass
[1] "Remove cluster labels:" "PODXL MUTATED"         
clus
  PODXL MUTATED PODXL WILD-TYPE 
              1              57 
     TCGA-A3-3311      TCGA-A3-3313      TCGA-A3-3322      TCGA-A3-3323 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347      TCGA-A3-3349 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-A3-3362      TCGA-A3-3374      TCGA-AK-3427      TCGA-AK-3440 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455      TCGA-AK-3456 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467      TCGA-AL-3468 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777      TCGA-B2-3923 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099      TCGA-B3-3925 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-B9-4617      TCGA-BP-4161 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-BP-4162      TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-CJ-4634      TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-CJ-4639      TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-CJ-4644 
"PODXL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PODXL MUTATED        0      1      0      0      0
  PODXL WILD-TYPE      7     15     16     10      9
D49V2, multiclass
[1] "Remove cluster labels:" "PODXL MUTATED"         
clus
  PODXL MUTATED PODXL WILD-TYPE 
              1              57 
     TCGA-A3-3311      TCGA-A3-3313      TCGA-A3-3322      TCGA-A3-3323 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347      TCGA-A3-3349 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-A3-3362      TCGA-A3-3374      TCGA-AK-3427      TCGA-AK-3440 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455      TCGA-AK-3456 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467      TCGA-AL-3468 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777      TCGA-B2-3923 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099      TCGA-B3-3925 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104      TCGA-B8-4143 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154      TCGA-B8-4619 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117      TCGA-B9-4617      TCGA-BP-4161 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-BP-4162      TCGA-BP-4163      TCGA-BP-4164      TCGA-BP-4167 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-CJ-4634      TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-CJ-4639      TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-CJ-4644 
"PODXL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PODXL MUTATED        2      3      1
  PODXL WILD-TYPE    311    165    297
D49V3, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             2             311
  CLUS_2             3             165
  CLUS_3             1             297
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PODXL MUTATED        1      2      2      0      0
  PODXL WILD-TYPE     94    109    140     63    185
D49V4, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2             109
  CLUS_3             2             140
  CLUS_4             0              63
  CLUS_5             0             185
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODXL MUTATED        2      3      0      1
  PODXL WILD-TYPE    161    158    170    174
D49V5, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             2             161
  CLUS_2             3             158
  CLUS_3             0             170
  CLUS_4             1             174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PODXL MUTATED        2      0      1      1      1      1      0
  PODXL WILD-TYPE    176     62    104    128     51     60     82
D49V6, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             2             176
  CLUS_2             0              62
  CLUS_3             1             104
  CLUS_4             1             128
  CLUS_5             1              51
  CLUS_6             1              60
  CLUS_7             0              82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODXL MUTATED        1      1      2      2
  PODXL WILD-TYPE    106    178    231    260
D49V7, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             1             106
  CLUS_2             1             178
  CLUS_3             2             231
  CLUS_4             2             260
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PODXL MUTATED        1      1      1      1      0      1      1      0
  PODXL WILD-TYPE     83     49    121     76    107     31     89     52
                 vv
clus              CLUS_9
  PODXL MUTATED        0
  PODXL WILD-TYPE    167
D49V8, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              49
  CLUS_3             1             121
  CLUS_4             1              76
  CLUS_5             0             107
  CLUS_6             1              31
  CLUS_7             1              89
  CLUS_8             0              52
  CLUS_9             0             167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PODXL MUTATED        3      1      2
  PODXL WILD-TYPE    326    163    280
D49V9, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             3             326
  CLUS_2             1             163
  CLUS_3             2             280
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODXL MUTATED        1      2      2      1
  PODXL WILD-TYPE     72    298    196    203
D49V10, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             1              72
  CLUS_2             2             298
  CLUS_3             2             196
  CLUS_4             1             203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODXL MUTATED        0      1      1      1
  PODXL WILD-TYPE    155     65     55     95
D49V11, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             0             155
  CLUS_2             1              65
  CLUS_3             1              55
  CLUS_4             1              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PODXL MUTATED        0      2      0      0      0      0      1
  PODXL WILD-TYPE     90     71     50     19     37     58     45
D49V12, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             0              90
  CLUS_2             2              71
  CLUS_3             0              50
  CLUS_4             0              19
  CLUS_5             0              37
  CLUS_6             0              58
  CLUS_7             1              45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DNAJA3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJA3 MUTATED        0      1      0      0
  DNAJA3 WILD-TYPE     17     15     10     15
D50V1, multiclass
[1] "Remove cluster labels:" "DNAJA3 MUTATED"        
clus
  DNAJA3 MUTATED DNAJA3 WILD-TYPE 
               1               57 
      TCGA-A3-3311       TCGA-A3-3313       TCGA-A3-3322       TCGA-A3-3323 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347       TCGA-A3-3349 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A3-3362       TCGA-A3-3374       TCGA-AK-3427       TCGA-AK-3440 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455       TCGA-AK-3456 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467       TCGA-AL-3468 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777       TCGA-B2-3923 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099       TCGA-B3-3925 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104       TCGA-B8-4143 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154       TCGA-B8-4619 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114       TCGA-B9-4115 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B9-4116       TCGA-B9-4117       TCGA-B9-4617       TCGA-BP-4161 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4162       TCGA-BP-4163       TCGA-BP-4164       TCGA-BP-4167 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4634       TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4639       TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4644 
"DNAJA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJA3 MUTATED        0      1      0      0      0
  DNAJA3 WILD-TYPE      7     15     16     10      9
D50V2, multiclass
[1] "Remove cluster labels:" "DNAJA3 MUTATED"        
clus
  DNAJA3 MUTATED DNAJA3 WILD-TYPE 
               1               57 
      TCGA-A3-3311       TCGA-A3-3313       TCGA-A3-3322       TCGA-A3-3323 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347       TCGA-A3-3349 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A3-3362       TCGA-A3-3374       TCGA-AK-3427       TCGA-AK-3440 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455       TCGA-AK-3456 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467       TCGA-AL-3468 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777       TCGA-B2-3923 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099       TCGA-B3-3925 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104       TCGA-B8-4143 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154       TCGA-B8-4619 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114       TCGA-B9-4115 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B9-4116       TCGA-B9-4117       TCGA-B9-4617       TCGA-BP-4161 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4162       TCGA-BP-4163       TCGA-BP-4164       TCGA-BP-4167 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4634       TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4638 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4639       TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4644 
"DNAJA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJA3 MUTATED        1      1      1
  DNAJA3 WILD-TYPE    312    167    297
D50V3, multiclass
        clus
vv       DNAJA3 MUTATED DNAJA3 WILD-TYPE
  CLUS_1              1              312
  CLUS_2              1              167
  CLUS_3              1              297
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJA3 MUTATED        1      0      0      0      1
  DNAJA3 WILD-TYPE     94    111    142     63    184
D50V4, multiclass
[1] "Remove cluster labels:" "DNAJA3 MUTATED"        
clus
  DNAJA3 MUTATED DNAJA3 WILD-TYPE 
               2              594 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J2       TCGA-2Z-A9J3 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-2Z-A9J5       TCGA-2Z-A9J6       TCGA-2Z-A9J7       TCGA-2Z-A9J8 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-2Z-A9JD       TCGA-2Z-A9JE       TCGA-2Z-A9JG       TCGA-2Z-A9JI 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-2Z-A9JJ       TCGA-2Z-A9JK       TCGA-2Z-A9JL       TCGA-2Z-A9JM 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-2Z-A9JO       TCGA-2Z-A9JP       TCGA-2Z-A9JQ       TCGA-2Z-A9JR 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-2Z-A9JS       TCGA-2Z-A9JT       TCGA-4A-A93W       TCGA-4A-A93X 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-4A-A93Y       TCGA-5P-A9JU       TCGA-5P-A9JV       TCGA-5P-A9JW 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9JZ       TCGA-5P-A9K0       TCGA-5P-A9K2 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-5P-A9K3       TCGA-5P-A9K6       TCGA-5P-A9K8       TCGA-5P-A9KA 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-5P-A9KC       TCGA-5P-A9KE       TCGA-5P-A9KH       TCGA-A3-3357 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A3-3358       TCGA-A3-3367       TCGA-A3-3370       TCGA-A3-3373 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A3-3376       TCGA-A3-3385       TCGA-A3-3387       TCGA-A4-7286 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7583       TCGA-A4-7584 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A4-7585       TCGA-A4-7732       TCGA-A4-7734       TCGA-A4-7828 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997       TCGA-A4-8098 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A4-8310       TCGA-A4-8311       TCGA-A4-8312       TCGA-A4-8515 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A48D 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A4-A4ZT       TCGA-A4-A57E       TCGA-A4-A5DU       TCGA-A4-A5XZ 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-A4-A6HP       TCGA-A4-A772 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A4-A7UZ       TCGA-AK-3425       TCGA-AK-3428       TCGA-AK-3431 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AK-3434       TCGA-AK-3440       TCGA-AK-3445       TCGA-AK-3450 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AK-3453       TCGA-AK-3454       TCGA-AK-3458       TCGA-AK-3460 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AK-3461       TCGA-AL-7173       TCGA-AL-A5DJ       TCGA-AT-A5NU 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4690       TCGA-B0-4691       TCGA-B0-4693       TCGA-B0-4694 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4697       TCGA-B0-4700       TCGA-B0-4703       TCGA-B0-4706 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4707       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4713 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4714       TCGA-B0-4718       TCGA-B0-4810       TCGA-B0-4811 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4813       TCGA-B0-4814       TCGA-B0-4815       TCGA-B0-4816 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4817       TCGA-B0-4818       TCGA-B0-4819       TCGA-B0-4822 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4823       TCGA-B0-4824       TCGA-B0-4827       TCGA-B0-4828 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4841       TCGA-B0-4842       TCGA-B0-4843       TCGA-B0-4844 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4845       TCGA-B0-4846       TCGA-B0-4847       TCGA-B0-4848 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4849       TCGA-B0-4852       TCGA-B0-4945       TCGA-B0-5080 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5083       TCGA-B0-5092       TCGA-B0-5094       TCGA-B0-5095 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5096       TCGA-B0-5097       TCGA-B0-5098       TCGA-B0-5099 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5100       TCGA-B0-5102       TCGA-B0-5104       TCGA-B0-5106 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5107       TCGA-B0-5108       TCGA-B0-5109       TCGA-B0-5110 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5113       TCGA-B0-5115       TCGA-B0-5116       TCGA-B0-5117 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5119       TCGA-B0-5120       TCGA-B0-5121       TCGA-B0-5399 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5400       TCGA-B0-5402       TCGA-B0-5691       TCGA-B0-5692 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5693       TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5697       TCGA-B0-5698       TCGA-B0-5699       TCGA-B0-5701 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5703       TCGA-B0-5705       TCGA-B0-5706 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5707       TCGA-B0-5709       TCGA-B0-5710       TCGA-B0-5711 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5712       TCGA-B0-5713       TCGA-B0-5812       TCGA-B1-5398 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B1-7332       TCGA-B1-A47M       TCGA-B1-A47N       TCGA-B1-A47O 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A655       TCGA-B1-A656       TCGA-B1-A657 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B2-3924       TCGA-B2-4101       TCGA-B2-5633       TCGA-B2-5635 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B2-5641       TCGA-B3-8121       TCGA-B3-A6W5       TCGA-B4-5377 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B4-5832       TCGA-B4-5834       TCGA-B4-5835       TCGA-B4-5836 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B4-5838       TCGA-B4-5843       TCGA-B4-5844       TCGA-B8-4146 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-4153       TCGA-B8-4621       TCGA-B8-4622       TCGA-B8-5158 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-5159       TCGA-B8-5162       TCGA-B8-5163       TCGA-B8-5164 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-5165       TCGA-B8-5545       TCGA-B8-5546       TCGA-B8-5549 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B9-5155       TCGA-B9-5156       TCGA-B9-7268       TCGA-B9-A44B 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B9-A5W7       TCGA-B9-A5W8       TCGA-B9-A5W9       TCGA-B9-A69E 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B9-A8YH       TCGA-B9-A8YI       TCGA-BP-4177       TCGA-BP-4760 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4770       TCGA-BP-4782       TCGA-BP-4795       TCGA-BP-4801 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4993       TCGA-BP-5010       TCGA-BP-5168       TCGA-BP-5169 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5170       TCGA-BP-5173       TCGA-BP-5174       TCGA-BP-5175 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5176       TCGA-BP-5177       TCGA-BP-5178       TCGA-BP-5180 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5181       TCGA-BP-5182       TCGA-BP-5183       TCGA-BP-5184 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5185       TCGA-BP-5186       TCGA-BP-5187       TCGA-BP-5189 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5190       TCGA-BP-5191       TCGA-BP-5192       TCGA-BP-5194 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5195       TCGA-BP-5196       TCGA-BP-5198       TCGA-BP-5199 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5200       TCGA-BP-5201       TCGA-BP-5202       TCGA-BQ-5875 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5876       TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5884       TCGA-BQ-5885       TCGA-BQ-5886       TCGA-BQ-5887 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890       TCGA-BQ-5891 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894       TCGA-BQ-7044 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7049 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-7056       TCGA-BQ-7058       TCGA-BQ-7059       TCGA-BQ-7060 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-7061       TCGA-BQ-7062       TCGA-CJ-4869       TCGA-CJ-4882 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4897       TCGA-CJ-4901       TCGA-CJ-4902       TCGA-CJ-4903 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4904       TCGA-CJ-4905       TCGA-CJ-4907       TCGA-CJ-4908 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4912       TCGA-CJ-4913       TCGA-CJ-4916       TCGA-CJ-4918 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4920       TCGA-CJ-4923       TCGA-CJ-5671       TCGA-CJ-5672 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5677       TCGA-CJ-5678 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-5679       TCGA-CJ-5680       TCGA-CJ-5681       TCGA-CJ-5682 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-5683       TCGA-CJ-5684       TCGA-CJ-5686       TCGA-CJ-6027 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-6028       TCGA-CJ-6030       TCGA-CJ-6031       TCGA-CJ-6032 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-6033       TCGA-CW-5580       TCGA-CW-5581       TCGA-CW-5583 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CW-5585       TCGA-CW-5588       TCGA-CW-5589       TCGA-CW-5591 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CW-6087       TCGA-CW-6090       TCGA-CW-6093       TCGA-CW-6097 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-4853       TCGA-CZ-4856       TCGA-CZ-4859       TCGA-CZ-4863 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-4865       TCGA-CZ-4866       TCGA-CZ-5451       TCGA-CZ-5452 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5456 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5457       TCGA-CZ-5458       TCGA-CZ-5459       TCGA-CZ-5460 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5461       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5465 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5466       TCGA-CZ-5467       TCGA-CZ-5468       TCGA-CZ-5469 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5470       TCGA-CZ-5982       TCGA-CZ-5984       TCGA-CZ-5985 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5986       TCGA-CZ-5987       TCGA-CZ-5988       TCGA-CZ-5989 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5568       TCGA-DV-5569 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DV-5574       TCGA-DV-5575       TCGA-DV-5576       TCGA-DW-5560 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7836       TCGA-DW-7837 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7841 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DW-7842       TCGA-DW-7963       TCGA-DZ-6131       TCGA-DZ-6132 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EU-5904 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-EU-5905       TCGA-EU-5906       TCGA-EU-5907       TCGA-EV-5901 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-F9-A7Q0 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-F9-A7VF       TCGA-F9-A8NY       TCGA-F9-A97G       TCGA-G7-6789 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793       TCGA-G7-6795 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-G7-6796       TCGA-G7-6797       TCGA-G7-7501       TCGA-G7-7502 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC       TCGA-G7-A8LD 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59R       TCGA-GL-A59T 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-GL-A9DC       TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-HE-7129       TCGA-HE-7130       TCGA-HE-A5NF       TCGA-HE-A5NH 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-HE-A5NI       TCGA-HE-A5NJ       TCGA-HE-A5NK       TCGA-HE-A5NL 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-IA-A40U       TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IA-A83S 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-IA-A83T       TCGA-IA-A83V       TCGA-IA-A83W       TCGA-IZ-8195 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-IZ-8196       TCGA-IZ-A6M8       TCGA-IZ-A6M9       TCGA-J7-6720 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-J7-8537       TCGA-J7-A8I2       TCGA-KL-8323       TCGA-KL-8324 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8325       TCGA-KL-8326       TCGA-KL-8327       TCGA-KL-8328 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8329       TCGA-KL-8330       TCGA-KL-8331       TCGA-KL-8332 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8337       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KL-8346       TCGA-KM-8438       TCGA-KM-8439 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KM-8440       TCGA-KM-8441       TCGA-KM-8442       TCGA-KM-8443 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KM-8476       TCGA-KM-8477       TCGA-KM-8639       TCGA-KN-8418 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KN-8419       TCGA-KN-8421       TCGA-KN-8422       TCGA-KN-8423 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KN-8424       TCGA-KN-8425       TCGA-KN-8426       TCGA-KN-8427 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430       TCGA-KN-8431 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434       TCGA-KN-8435 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8403       TCGA-KO-8404 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KO-8405       TCGA-KO-8406       TCGA-KO-8407       TCGA-KO-8408 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8411       TCGA-KO-8413 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KO-8414       TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KV-A6GD       TCGA-KV-A6GE       TCGA-KV-A74V       TCGA-MH-A55W 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-MH-A55Z       TCGA-MH-A560       TCGA-MH-A561       TCGA-MH-A562 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-MH-A854       TCGA-MH-A855       TCGA-MH-A856       TCGA-MH-A857 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-O9-A75Z       TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-P4-A5EA       TCGA-P4-A5EB       TCGA-P4-A5ED       TCGA-P4-AAVL 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-P4-AAVM       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-PJ-A8JU 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-Q2-A5QZ       TCGA-SX-A71R       TCGA-SX-A71U       TCGA-SX-A71V 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-SX-A71W       TCGA-SX-A7SL       TCGA-SX-A7SM       TCGA-SX-A7SN 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-SX-A7SO       TCGA-SX-A7SP       TCGA-SX-A7SQ       TCGA-SX-A7SR 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-SX-A7SS       TCGA-SX-A7SU       TCGA-UN-AAZ9       TCGA-UZ-A9PJ 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PM       TCGA-UZ-A9PN 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-UZ-A9PO       TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PS 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-UZ-A9PU       TCGA-UZ-A9PV       TCGA-UZ-A9PX       TCGA-UZ-A9PZ 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-UZ-A9Q0       TCGA-UZ-A9Q1       TCGA-V9-A7HT       TCGA-WN-A9G9 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-WN-AB4C       TCGA-Y8-A894       TCGA-Y8-A895       TCGA-Y8-A896 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-Y8-A897       TCGA-Y8-A898       TCGA-Y8-A8RY       TCGA-Y8-A8RZ 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJA3 MUTATED        0      1      0      0
  DNAJA3 WILD-TYPE    163    160    170    175
D50V5, multiclass
[1] "Remove cluster labels:" "DNAJA3 MUTATED"        
clus
  DNAJA3 MUTATED DNAJA3 WILD-TYPE 
               1              668 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J3       TCGA-2Z-A9J5 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-2Z-A9J6       TCGA-2Z-A9J7       TCGA-2Z-A9J8       TCGA-2Z-A9JD 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-2Z-A9JE       TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JL 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-2Z-A9JO       TCGA-2Z-A9JP       TCGA-2Z-A9JQ       TCGA-2Z-A9JT 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-4A-A93W       TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JU 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9KE       TCGA-A3-3311       TCGA-A3-3313 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A3-3322       TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A3-3347       TCGA-A3-3349       TCGA-A3-3357       TCGA-A3-3362 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A3-3367       TCGA-A3-3370       TCGA-A3-3373       TCGA-A3-3374 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A3-3376       TCGA-A3-3385       TCGA-A3-3387       TCGA-A4-7288 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A4-7583       TCGA-A4-7584       TCGA-A4-7585       TCGA-A4-7734 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997       TCGA-A4-8098 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A4-8311       TCGA-A4-8517       TCGA-A4-8630       TCGA-A4-A57E 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AK-3427       TCGA-AK-3428       TCGA-AK-3434       TCGA-AK-3436 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AK-3451       TCGA-AK-3456       TCGA-AL-3472       TCGA-AL-3473 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AL-7173       TCGA-AL-A5DJ       TCGA-B0-4690       TCGA-B0-4691 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4693       TCGA-B0-4694       TCGA-B0-4697       TCGA-B0-4700 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4703       TCGA-B0-4706       TCGA-B0-4707       TCGA-B0-4710 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4712       TCGA-B0-4713       TCGA-B0-4714       TCGA-B0-4718 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4813       TCGA-B0-4814 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4815       TCGA-B0-4816       TCGA-B0-4817       TCGA-B0-4818 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4819       TCGA-B0-4822       TCGA-B0-4823       TCGA-B0-4824 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4827       TCGA-B0-4828       TCGA-B0-4833       TCGA-B0-4836 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4837       TCGA-B0-4838       TCGA-B0-4839       TCGA-B0-4841 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4842       TCGA-B0-4843       TCGA-B0-4844       TCGA-B0-4845 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4846       TCGA-B0-4847       TCGA-B0-4848       TCGA-B0-4849 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4852       TCGA-B0-4945       TCGA-B0-5075       TCGA-B0-5077 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5081       TCGA-B0-5084       TCGA-B0-5085 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5088       TCGA-B0-5092       TCGA-B0-5094       TCGA-B0-5095 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5096       TCGA-B0-5097       TCGA-B0-5098       TCGA-B0-5099 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5100       TCGA-B0-5102       TCGA-B0-5104       TCGA-B0-5106 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5107       TCGA-B0-5108       TCGA-B0-5109       TCGA-B0-5110 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5113       TCGA-B0-5115       TCGA-B0-5116       TCGA-B0-5117 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5119       TCGA-B0-5120       TCGA-B0-5121       TCGA-B0-5399 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5400       TCGA-B0-5402       TCGA-B0-5691       TCGA-B0-5692 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5693       TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5697       TCGA-B0-5698       TCGA-B0-5699       TCGA-B0-5701 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5703       TCGA-B0-5705       TCGA-B0-5706 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5707       TCGA-B0-5709       TCGA-B0-5710       TCGA-B0-5711 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5712       TCGA-B0-5713       TCGA-B0-5812       TCGA-B1-5398 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B1-7332       TCGA-B1-A47M       TCGA-B1-A47N       TCGA-B1-A47O 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B2-4098       TCGA-B2-4099       TCGA-B2-4101       TCGA-B2-5633 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B2-5635       TCGA-B2-5641       TCGA-B3-8121       TCGA-B3-A6W5 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5832       TCGA-B4-5834       TCGA-B4-5835 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B4-5836       TCGA-B4-5838       TCGA-B4-5843       TCGA-B4-5844 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4146       TCGA-B8-4153       TCGA-B8-4620 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-4622       TCGA-B8-5158       TCGA-B8-5159 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-5162       TCGA-B8-5163       TCGA-B8-5164       TCGA-B8-5165 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-5545       TCGA-B8-5546       TCGA-B8-5549       TCGA-B8-5550 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-5155 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-7268       TCGA-B9-A44B       TCGA-B9-A5W7 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B9-A5W8       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B9-A8YI       TCGA-BP-4158       TCGA-BP-4161       TCGA-BP-4164 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4165       TCGA-BP-4169       TCGA-BP-4170       TCGA-BP-4173 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4174       TCGA-BP-4326       TCGA-BP-4329       TCGA-BP-4330 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4331       TCGA-BP-4337       TCGA-BP-4338       TCGA-BP-4341 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4342       TCGA-BP-4343       TCGA-BP-4345       TCGA-BP-4346 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4347       TCGA-BP-4349       TCGA-BP-4351       TCGA-BP-4352 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4354       TCGA-BP-4355       TCGA-BP-4756       TCGA-BP-4758 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4759       TCGA-BP-4760       TCGA-BP-4761       TCGA-BP-4762 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4763       TCGA-BP-4765       TCGA-BP-4766       TCGA-BP-4768 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4770       TCGA-BP-4771       TCGA-BP-4774       TCGA-BP-4775 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4777       TCGA-BP-4781       TCGA-BP-4787       TCGA-BP-4789 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4790       TCGA-BP-4797       TCGA-BP-4798       TCGA-BP-4799 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4801       TCGA-BP-4803       TCGA-BP-4804       TCGA-BP-4807 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4960       TCGA-BP-4961       TCGA-BP-4962       TCGA-BP-4963 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4964       TCGA-BP-4965       TCGA-BP-4967       TCGA-BP-4968 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4971       TCGA-BP-4972       TCGA-BP-4973 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4974       TCGA-BP-4975       TCGA-BP-4976       TCGA-BP-4977 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4983       TCGA-BP-4985 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4986       TCGA-BP-4987       TCGA-BP-4988       TCGA-BP-4989 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4991       TCGA-BP-4992       TCGA-BP-4993       TCGA-BP-4994 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-4999       TCGA-BP-5000 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5001       TCGA-BP-5004       TCGA-BP-5006       TCGA-BP-5007 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BP-5010       TCGA-BP-5168 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5169       TCGA-BP-5170       TCGA-BP-5173       TCGA-BP-5174 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5175       TCGA-BP-5176       TCGA-BP-5177       TCGA-BP-5178 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5180       TCGA-BP-5181       TCGA-BP-5182       TCGA-BP-5183 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5184       TCGA-BP-5185       TCGA-BP-5186       TCGA-BP-5187 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5189       TCGA-BP-5190       TCGA-BP-5191       TCGA-BP-5192 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5194       TCGA-BP-5195       TCGA-BP-5196       TCGA-BP-5198 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5199       TCGA-BP-5200       TCGA-BP-5201       TCGA-BP-5202 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5875       TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5885       TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7046       TCGA-BQ-7048 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058       TCGA-BQ-7059 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-CJ-4634 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4635       TCGA-CJ-4638       TCGA-CJ-4640       TCGA-CJ-4868 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4869       TCGA-CJ-4870       TCGA-CJ-4871       TCGA-CJ-4872 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4873       TCGA-CJ-4874       TCGA-CJ-4875       TCGA-CJ-4876 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4878       TCGA-CJ-4881       TCGA-CJ-4882       TCGA-CJ-4884 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4885       TCGA-CJ-4886       TCGA-CJ-4887       TCGA-CJ-4888 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4889       TCGA-CJ-4890       TCGA-CJ-4891       TCGA-CJ-4892 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4893       TCGA-CJ-4894       TCGA-CJ-4895       TCGA-CJ-4897 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4899       TCGA-CJ-4900       TCGA-CJ-4901       TCGA-CJ-4902 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4903       TCGA-CJ-4904       TCGA-CJ-4905       TCGA-CJ-4907 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4908       TCGA-CJ-4912       TCGA-CJ-4913       TCGA-CJ-4916 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4918       TCGA-CJ-4920       TCGA-CJ-4923       TCGA-CJ-5671 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-5672       TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5677 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-5678       TCGA-CJ-5679       TCGA-CJ-5680       TCGA-CJ-5681 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-5682       TCGA-CJ-5683       TCGA-CJ-5684       TCGA-CJ-5686 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-6027       TCGA-CJ-6028       TCGA-CJ-6030       TCGA-CJ-6031 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CJ-6033       TCGA-CW-5580       TCGA-CW-5581 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CW-5583       TCGA-CW-5585       TCGA-CW-5588       TCGA-CW-5589 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CW-5591       TCGA-CW-6087       TCGA-CW-6090       TCGA-CW-6093 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CW-6097       TCGA-CZ-4853       TCGA-CZ-4854       TCGA-CZ-4856 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-4857       TCGA-CZ-4858       TCGA-CZ-4859       TCGA-CZ-4861 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-4862       TCGA-CZ-4863       TCGA-CZ-4865       TCGA-CZ-4866 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5451       TCGA-CZ-5452       TCGA-CZ-5453       TCGA-CZ-5454 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5455       TCGA-CZ-5456       TCGA-CZ-5457       TCGA-CZ-5458 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5460       TCGA-CZ-5461       TCGA-CZ-5462 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5463       TCGA-CZ-5465       TCGA-CZ-5466       TCGA-CZ-5467 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5468       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5982 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5984       TCGA-CZ-5985       TCGA-CZ-5986       TCGA-CZ-5987 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5988       TCGA-CZ-5989       TCGA-DV-5565       TCGA-DV-5566 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DV-5568       TCGA-DV-5569       TCGA-DV-5574       TCGA-DV-5575 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DV-5576       TCGA-DW-5560       TCGA-DW-5561       TCGA-DW-7834 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DW-7837       TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DW-7841       TCGA-DW-7842       TCGA-DW-7963       TCGA-DZ-6131 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-EU-5904       TCGA-EU-5905       TCGA-EU-5906       TCGA-EU-5907 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-F9-A7Q0       TCGA-F9-A7VF       TCGA-F9-A8NY       TCGA-F9-A97G 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-6797       TCGA-G7-7501 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-G7-7502       TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-G7-A8LD       TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59R 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-GL-A9DC       TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-HE-7129       TCGA-HE-7130       TCGA-HE-A5NF       TCGA-HE-A5NH 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-HE-A5NI       TCGA-HE-A5NJ       TCGA-HE-A5NK       TCGA-HE-A5NL 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-IA-A40U       TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IA-A83V 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-IA-A83W       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M8 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-J7-A8I2       TCGA-KL-8324 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8325       TCGA-KL-8326       TCGA-KL-8327       TCGA-KL-8328 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8329       TCGA-KL-8330       TCGA-KL-8331       TCGA-KL-8332 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8337       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KL-8346       TCGA-KM-8438       TCGA-KM-8439 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KM-8440       TCGA-KM-8441       TCGA-KM-8442       TCGA-KM-8443 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KM-8476       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KN-8421       TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8425 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KN-8426       TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KN-8430       TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KN-8434       TCGA-KN-8435       TCGA-KN-8436       TCGA-KN-8437 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KO-8403       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8406 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KO-8407       TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KO-8411       TCGA-KO-8413       TCGA-KO-8414       TCGA-KO-8415 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KV-A74V       TCGA-MH-A55Z       TCGA-MH-A560       TCGA-MH-A562 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-MH-A855       TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-P4-A5EA       TCGA-P4-A5EB       TCGA-P4-A5ED       TCGA-P4-AAVL 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-P4-AAVM       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-PJ-A8JU 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-Q2-A5QZ       TCGA-SX-A71R       TCGA-SX-A71U       TCGA-SX-A7SM 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-SX-A7SN       TCGA-SX-A7SO       TCGA-SX-A7SP       TCGA-SX-A7SQ 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-SX-A7SR       TCGA-SX-A7SS       TCGA-UN-AAZ9       TCGA-UZ-A9PJ 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PM       TCGA-UZ-A9PN 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-UZ-A9PO       TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PS 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-UZ-A9PU       TCGA-UZ-A9PV       TCGA-UZ-A9PX       TCGA-UZ-A9PZ 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-UZ-A9Q0       TCGA-UZ-A9Q1       TCGA-V9-A7HT       TCGA-WN-A9G9 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-Y8-A894       TCGA-Y8-A895       TCGA-Y8-A896       TCGA-Y8-A897 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-Y8-A8RY       TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAJA3 MUTATED        1      0      0      0      0      0      0
  DNAJA3 WILD-TYPE    177     62    105    129     52     61     82
D50V6, multiclass
[1] "Remove cluster labels:" "DNAJA3 MUTATED"        
clus
  DNAJA3 MUTATED DNAJA3 WILD-TYPE 
               1              668 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J3       TCGA-2Z-A9J5 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-2Z-A9J6       TCGA-2Z-A9J7       TCGA-2Z-A9J8       TCGA-2Z-A9JD 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-2Z-A9JE       TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JL 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-2Z-A9JO       TCGA-2Z-A9JP       TCGA-2Z-A9JQ       TCGA-2Z-A9JT 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-4A-A93W       TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JU 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9KE       TCGA-A3-3311       TCGA-A3-3313 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A3-3322       TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A3-3347       TCGA-A3-3349       TCGA-A3-3357       TCGA-A3-3362 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A3-3367       TCGA-A3-3370       TCGA-A3-3373       TCGA-A3-3374 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A3-3376       TCGA-A3-3385       TCGA-A3-3387       TCGA-A4-7288 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A4-7583       TCGA-A4-7584       TCGA-A4-7585       TCGA-A4-7734 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997       TCGA-A4-8098 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-A4-8311       TCGA-A4-8517       TCGA-A4-8630       TCGA-A4-A57E 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AK-3427       TCGA-AK-3428       TCGA-AK-3434       TCGA-AK-3436 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AK-3451       TCGA-AK-3456       TCGA-AL-3472       TCGA-AL-3473 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-AL-7173       TCGA-AL-A5DJ       TCGA-B0-4690       TCGA-B0-4691 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4693       TCGA-B0-4694       TCGA-B0-4697       TCGA-B0-4700 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4703       TCGA-B0-4706       TCGA-B0-4707       TCGA-B0-4710 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4712       TCGA-B0-4713       TCGA-B0-4714       TCGA-B0-4718 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4813       TCGA-B0-4814 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4815       TCGA-B0-4816       TCGA-B0-4817       TCGA-B0-4818 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4819       TCGA-B0-4822       TCGA-B0-4823       TCGA-B0-4824 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4827       TCGA-B0-4828       TCGA-B0-4833       TCGA-B0-4836 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4837       TCGA-B0-4838       TCGA-B0-4839       TCGA-B0-4841 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4842       TCGA-B0-4843       TCGA-B0-4844       TCGA-B0-4845 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4846       TCGA-B0-4847       TCGA-B0-4848       TCGA-B0-4849 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-4852       TCGA-B0-4945       TCGA-B0-5075       TCGA-B0-5077 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5081       TCGA-B0-5084       TCGA-B0-5085 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5088       TCGA-B0-5092       TCGA-B0-5094       TCGA-B0-5095 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5096       TCGA-B0-5097       TCGA-B0-5098       TCGA-B0-5099 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5100       TCGA-B0-5102       TCGA-B0-5104       TCGA-B0-5106 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5107       TCGA-B0-5108       TCGA-B0-5109       TCGA-B0-5110 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5113       TCGA-B0-5115       TCGA-B0-5116       TCGA-B0-5117 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5119       TCGA-B0-5120       TCGA-B0-5121       TCGA-B0-5399 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5400       TCGA-B0-5402       TCGA-B0-5691       TCGA-B0-5692 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5693       TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5697       TCGA-B0-5698       TCGA-B0-5699       TCGA-B0-5701 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5703       TCGA-B0-5705       TCGA-B0-5706 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5707       TCGA-B0-5709       TCGA-B0-5710       TCGA-B0-5711 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B0-5712       TCGA-B0-5713       TCGA-B0-5812       TCGA-B1-5398 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B1-7332       TCGA-B1-A47M       TCGA-B1-A47N       TCGA-B1-A47O 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B2-4098       TCGA-B2-4099       TCGA-B2-4101       TCGA-B2-5633 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B2-5635       TCGA-B2-5641       TCGA-B3-8121       TCGA-B3-A6W5 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5832       TCGA-B4-5834       TCGA-B4-5835 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B4-5836       TCGA-B4-5838       TCGA-B4-5843       TCGA-B4-5844 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4146       TCGA-B8-4153       TCGA-B8-4620 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-4622       TCGA-B8-5158       TCGA-B8-5159 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-5162       TCGA-B8-5163       TCGA-B8-5164       TCGA-B8-5165 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-5545       TCGA-B8-5546       TCGA-B8-5549       TCGA-B8-5550 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-5155 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-7268       TCGA-B9-A44B       TCGA-B9-A5W7 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B9-A5W8       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-B9-A8YI       TCGA-BP-4158       TCGA-BP-4161       TCGA-BP-4164 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4165       TCGA-BP-4169       TCGA-BP-4170       TCGA-BP-4173 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4174       TCGA-BP-4326       TCGA-BP-4329       TCGA-BP-4330 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4331       TCGA-BP-4337       TCGA-BP-4338       TCGA-BP-4341 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4342       TCGA-BP-4343       TCGA-BP-4345       TCGA-BP-4346 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4347       TCGA-BP-4349       TCGA-BP-4351       TCGA-BP-4352 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4354       TCGA-BP-4355       TCGA-BP-4756       TCGA-BP-4758 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4759       TCGA-BP-4760       TCGA-BP-4761       TCGA-BP-4762 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4763       TCGA-BP-4765       TCGA-BP-4766       TCGA-BP-4768 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4770       TCGA-BP-4771       TCGA-BP-4774       TCGA-BP-4775 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4777       TCGA-BP-4781       TCGA-BP-4787       TCGA-BP-4789 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4790       TCGA-BP-4797       TCGA-BP-4798       TCGA-BP-4799 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4801       TCGA-BP-4803       TCGA-BP-4804       TCGA-BP-4807 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4960       TCGA-BP-4961       TCGA-BP-4962       TCGA-BP-4963 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4964       TCGA-BP-4965       TCGA-BP-4967       TCGA-BP-4968 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4971       TCGA-BP-4972       TCGA-BP-4973 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4974       TCGA-BP-4975       TCGA-BP-4976       TCGA-BP-4977 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4983       TCGA-BP-4985 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4986       TCGA-BP-4987       TCGA-BP-4988       TCGA-BP-4989 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4991       TCGA-BP-4992       TCGA-BP-4993       TCGA-BP-4994 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-4999       TCGA-BP-5000 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5001       TCGA-BP-5004       TCGA-BP-5006       TCGA-BP-5007 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BP-5010       TCGA-BP-5168 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5169       TCGA-BP-5170       TCGA-BP-5173       TCGA-BP-5174 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5175       TCGA-BP-5176       TCGA-BP-5177       TCGA-BP-5178 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5180       TCGA-BP-5181       TCGA-BP-5182       TCGA-BP-5183 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5184       TCGA-BP-5185       TCGA-BP-5186       TCGA-BP-5187 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5189       TCGA-BP-5190       TCGA-BP-5191       TCGA-BP-5192 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5194       TCGA-BP-5195       TCGA-BP-5196       TCGA-BP-5198 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BP-5199       TCGA-BP-5200       TCGA-BP-5201       TCGA-BP-5202 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5875       TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5880       TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5885       TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7046       TCGA-BQ-7048 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058       TCGA-BQ-7059 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-CJ-4634 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4635       TCGA-CJ-4638       TCGA-CJ-4640       TCGA-CJ-4868 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4869       TCGA-CJ-4870       TCGA-CJ-4871       TCGA-CJ-4872 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4873       TCGA-CJ-4874       TCGA-CJ-4875       TCGA-CJ-4876 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4878       TCGA-CJ-4881       TCGA-CJ-4882       TCGA-CJ-4884 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4885       TCGA-CJ-4886       TCGA-CJ-4887       TCGA-CJ-4888 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4889       TCGA-CJ-4890       TCGA-CJ-4891       TCGA-CJ-4892 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4893       TCGA-CJ-4894       TCGA-CJ-4895       TCGA-CJ-4897 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4899       TCGA-CJ-4900       TCGA-CJ-4901       TCGA-CJ-4902 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4903       TCGA-CJ-4904       TCGA-CJ-4905       TCGA-CJ-4907 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4908       TCGA-CJ-4912       TCGA-CJ-4913       TCGA-CJ-4916 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-4918       TCGA-CJ-4920       TCGA-CJ-4923       TCGA-CJ-5671 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-5672       TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5677 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-5678       TCGA-CJ-5679       TCGA-CJ-5680       TCGA-CJ-5681 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-5682       TCGA-CJ-5683       TCGA-CJ-5684       TCGA-CJ-5686 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-6027       TCGA-CJ-6028       TCGA-CJ-6030       TCGA-CJ-6031 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CJ-6033       TCGA-CW-5580       TCGA-CW-5581 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CW-5583       TCGA-CW-5585       TCGA-CW-5588       TCGA-CW-5589 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CW-5591       TCGA-CW-6087       TCGA-CW-6090       TCGA-CW-6093 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CW-6097       TCGA-CZ-4853       TCGA-CZ-4854       TCGA-CZ-4856 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-4857       TCGA-CZ-4858       TCGA-CZ-4859       TCGA-CZ-4861 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-4862       TCGA-CZ-4863       TCGA-CZ-4865       TCGA-CZ-4866 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5451       TCGA-CZ-5452       TCGA-CZ-5453       TCGA-CZ-5454 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5455       TCGA-CZ-5456       TCGA-CZ-5457       TCGA-CZ-5458 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5460       TCGA-CZ-5461       TCGA-CZ-5462 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5463       TCGA-CZ-5465       TCGA-CZ-5466       TCGA-CZ-5467 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5468       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5982 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5984       TCGA-CZ-5985       TCGA-CZ-5986       TCGA-CZ-5987 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-CZ-5988       TCGA-CZ-5989       TCGA-DV-5565       TCGA-DV-5566 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DV-5568       TCGA-DV-5569       TCGA-DV-5574       TCGA-DV-5575 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DV-5576       TCGA-DW-5560       TCGA-DW-5561       TCGA-DW-7834 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DW-7837       TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DW-7841       TCGA-DW-7842       TCGA-DW-7963       TCGA-DZ-6131 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-EU-5904       TCGA-EU-5905       TCGA-EU-5906       TCGA-EU-5907 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-F9-A7Q0       TCGA-F9-A7VF       TCGA-F9-A8NY       TCGA-F9-A97G 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-6797       TCGA-G7-7501 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-G7-7502       TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-G7-A8LD       TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59R 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-GL-A9DC       TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-HE-7129       TCGA-HE-7130       TCGA-HE-A5NF       TCGA-HE-A5NH 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-HE-A5NI       TCGA-HE-A5NJ       TCGA-HE-A5NK       TCGA-HE-A5NL 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-IA-A40U       TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IA-A83V 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-IA-A83W       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M8 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-J7-A8I2       TCGA-KL-8324 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8325       TCGA-KL-8326       TCGA-KL-8327       TCGA-KL-8328 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8329       TCGA-KL-8330       TCGA-KL-8331       TCGA-KL-8332 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8337       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KL-8346       TCGA-KM-8438       TCGA-KM-8439 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KM-8440       TCGA-KM-8441       TCGA-KM-8442       TCGA-KM-8443 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KM-8476       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KN-8421       TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8425 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KN-8426       TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KN-8430       TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KN-8434       TCGA-KN-8435       TCGA-KN-8436       TCGA-KN-8437 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KO-8403       TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8406 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KO-8407       TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KO-8411       TCGA-KO-8413       TCGA-KO-8414       TCGA-KO-8415 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-KV-A74V       TCGA-MH-A55Z       TCGA-MH-A560       TCGA-MH-A562 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-MH-A855       TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-P4-A5EA       TCGA-P4-A5EB       TCGA-P4-A5ED       TCGA-P4-AAVL 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-P4-AAVM       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-PJ-A8JU 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-Q2-A5QZ       TCGA-SX-A71R       TCGA-SX-A71U       TCGA-SX-A7SM 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-SX-A7SN       TCGA-SX-A7SO       TCGA-SX-A7SP       TCGA-SX-A7SQ 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-SX-A7SR       TCGA-SX-A7SS       TCGA-UN-AAZ9       TCGA-UZ-A9PJ 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PM       TCGA-UZ-A9PN 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-UZ-A9PO       TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PS 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-UZ-A9PU       TCGA-UZ-A9PV       TCGA-UZ-A9PX       TCGA-UZ-A9PZ 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-UZ-A9Q0       TCGA-UZ-A9Q1       TCGA-V9-A7HT       TCGA-WN-A9G9 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-Y8-A894       TCGA-Y8-A895       TCGA-Y8-A896       TCGA-Y8-A897 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
      TCGA-Y8-A8RY       TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" "DNAJA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJA3 MUTATED        1      1      0      1
  DNAJA3 WILD-TYPE    106    178    233    261
D50V7, multiclass
        clus
vv       DNAJA3 MUTATED DNAJA3 WILD-TYPE
  CLUS_1              1              106
  CLUS_2              1              178
  CLUS_3              0              233
  CLUS_4              1              261
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DNAJA3 MUTATED        1      0      0      0      0      1      0      0
  DNAJA3 WILD-TYPE     83     50    122     77    107     31     90     52
                  vv
clus               CLUS_9
  DNAJA3 MUTATED        1
  DNAJA3 WILD-TYPE    166
D50V8, multiclass
        clus
vv       DNAJA3 MUTATED DNAJA3 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               50
  CLUS_3              0              122
  CLUS_4              0               77
  CLUS_5              0              107
  CLUS_6              1               31
  CLUS_7              0               90
  CLUS_8              0               52
  CLUS_9              1              166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJA3 MUTATED        2      1      0
  DNAJA3 WILD-TYPE    327    163    282
D50V9, multiclass
        clus
vv       DNAJA3 MUTATED DNAJA3 WILD-TYPE
  CLUS_1              2              327
  CLUS_2              1              163
  CLUS_3              0              282
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJA3 MUTATED        0      2      0      1
  DNAJA3 WILD-TYPE     73    298    198    203
D50V10, multiclass
        clus
vv       DNAJA3 MUTATED DNAJA3 WILD-TYPE
  CLUS_1              0               73
  CLUS_2              2              298
  CLUS_3              0              198
  CLUS_4              1              203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJA3 MUTATED        1      1      0      1
  DNAJA3 WILD-TYPE    154     65     56     95
D50V11, multiclass
        clus
vv       DNAJA3 MUTATED DNAJA3 WILD-TYPE
  CLUS_1              1              154
  CLUS_2              1               65
  CLUS_3              0               56
  CLUS_4              1               95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAJA3 MUTATED        0      1      1      1      0      0      0
  DNAJA3 WILD-TYPE     90     72     49     18     37     58     46
D50V12, multiclass
        clus
vv       DNAJA3 MUTATED DNAJA3 WILD-TYPE
  CLUS_1              0               90
  CLUS_2              1               72
  CLUS_3              1               49
  CLUS_4              1               18
  CLUS_5              0               37
  CLUS_6              0               58
  CLUS_7              0               46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = NASP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NASP MUTATED        0      0      0      0
  NASP WILD-TYPE     17     16     10     15
D51V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NASP MUTATED        0      0      0      0      0
  NASP WILD-TYPE      7     16     16     10      9
D51V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NASP MUTATED        3      0      2
  NASP WILD-TYPE    310    168    296
D51V3, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            3            310
  CLUS_2            0            168
  CLUS_3            2            296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NASP MUTATED        2      1      0      1      1
  NASP WILD-TYPE     93    110    142     62    184
D51V4, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1            110
  CLUS_3            0            142
  CLUS_4            1             62
  CLUS_5            1            184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NASP MUTATED        2      0      0      3
  NASP WILD-TYPE    161    161    170    172
D51V5, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            2            161
  CLUS_2            0            161
  CLUS_3            0            170
  CLUS_4            3            172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NASP MUTATED        1      0      2      1      1      0      0
  NASP WILD-TYPE    177     62    103    128     51     61     82
D51V6, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            1            177
  CLUS_2            0             62
  CLUS_3            2            103
  CLUS_4            1            128
  CLUS_5            1             51
  CLUS_6            0             61
  CLUS_7            0             82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NASP MUTATED        2      2      0      1
  NASP WILD-TYPE    105    177    233    261
D51V7, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            2            105
  CLUS_2            2            177
  CLUS_3            0            233
  CLUS_4            1            261
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NASP MUTATED        2      1      0      0      1      0      0      0      1
  NASP WILD-TYPE     82     49    122     77    106     32     90     52    166
D51V8, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            2             82
  CLUS_2            1             49
  CLUS_3            0            122
  CLUS_4            0             77
  CLUS_5            1            106
  CLUS_6            0             32
  CLUS_7            0             90
  CLUS_8            0             52
  CLUS_9            1            166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NASP MUTATED        4      0      1
  NASP WILD-TYPE    325    164    281
D51V9, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            4            325
  CLUS_2            0            164
  CLUS_3            1            281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NASP MUTATED        2      2      0      1
  NASP WILD-TYPE     71    298    198    203
D51V10, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            2             71
  CLUS_2            2            298
  CLUS_3            0            198
  CLUS_4            1            203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NASP MUTATED        0      2      1      0
  NASP WILD-TYPE    155     64     55     96
D51V11, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            0            155
  CLUS_2            2             64
  CLUS_3            1             55
  CLUS_4            0             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NASP MUTATED        0      1      0      0      0      0      2
  NASP WILD-TYPE     90     72     50     19     37     58     44
D51V12, multiclass
        clus
vv       NASP MUTATED NASP WILD-TYPE
  CLUS_1            0             90
  CLUS_2            1             72
  CLUS_3            0             50
  CLUS_4            0             19
  CLUS_5            0             37
  CLUS_6            0             58
  CLUS_7            2             44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = SLC23A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC23A1 MUTATED        2      0      0      0
  SLC23A1 WILD-TYPE     15     16     10     15
D52V1, multiclass
[1] "Remove cluster labels:" "SLC23A1 MUTATED"       
clus
  SLC23A1 MUTATED SLC23A1 WILD-TYPE 
                2                56 
       TCGA-A3-3311        TCGA-A3-3313        TCGA-A3-3317        TCGA-A3-3323 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A3-3326        TCGA-A3-3331        TCGA-A3-3347        TCGA-A3-3349 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A3-3362        TCGA-A3-3374        TCGA-AK-3427        TCGA-AK-3440 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3455        TCGA-AK-3456 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467        TCGA-AL-3468 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AS-3777        TCGA-B2-3923 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4098        TCGA-B2-4099        TCGA-B3-3925 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B3-3926        TCGA-B3-4103        TCGA-B3-4104        TCGA-B8-4143 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B8-4148        TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4619 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B8-4620        TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4115 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B9-4116        TCGA-B9-4117        TCGA-B9-4617        TCGA-BP-4161 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4162        TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4636        TCGA-CJ-4637        TCGA-CJ-4638        TCGA-CJ-4639 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4640        TCGA-CJ-4641        TCGA-CJ-4643        TCGA-CJ-4644 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC23A1 MUTATED        2      0      0      0      0
  SLC23A1 WILD-TYPE      5     16     16     10      9
D52V2, multiclass
[1] "Remove cluster labels:" "SLC23A1 MUTATED"       
clus
  SLC23A1 MUTATED SLC23A1 WILD-TYPE 
                2                56 
       TCGA-A3-3311        TCGA-A3-3313        TCGA-A3-3317        TCGA-A3-3323 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A3-3326        TCGA-A3-3331        TCGA-A3-3347        TCGA-A3-3349 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A3-3362        TCGA-A3-3374        TCGA-AK-3427        TCGA-AK-3440 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AK-3443        TCGA-AK-3453        TCGA-AK-3455        TCGA-AK-3456 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AK-3465        TCGA-AL-3466        TCGA-AL-3467        TCGA-AL-3468 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AS-3777        TCGA-B2-3923 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B2-3924        TCGA-B2-4098        TCGA-B2-4099        TCGA-B3-3925 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B3-3926        TCGA-B3-4103        TCGA-B3-4104        TCGA-B8-4143 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B8-4148        TCGA-B8-4151        TCGA-B8-4154        TCGA-B8-4619 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B8-4620        TCGA-B9-4113        TCGA-B9-4114        TCGA-B9-4115 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B9-4116        TCGA-B9-4117        TCGA-B9-4617        TCGA-BP-4161 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4162        TCGA-BP-4163        TCGA-BP-4164        TCGA-BP-4167 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4636        TCGA-CJ-4637        TCGA-CJ-4638        TCGA-CJ-4639 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4640        TCGA-CJ-4641        TCGA-CJ-4643        TCGA-CJ-4644 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC23A1 MUTATED        2      1      3
  SLC23A1 WILD-TYPE    311    167    295
D52V3, multiclass
        clus
vv       SLC23A1 MUTATED SLC23A1 WILD-TYPE
  CLUS_1               2               311
  CLUS_2               1               167
  CLUS_3               3               295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC23A1 MUTATED        0      0      1      1      2
  SLC23A1 WILD-TYPE     95    111    141     62    183
D52V4, multiclass
        clus
vv       SLC23A1 MUTATED SLC23A1 WILD-TYPE
  CLUS_1               0                95
  CLUS_2               0               111
  CLUS_3               1               141
  CLUS_4               1                62
  CLUS_5               2               183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC23A1 MUTATED        2      1      3      0
  SLC23A1 WILD-TYPE    161    160    167    175
D52V5, multiclass
        clus
vv       SLC23A1 MUTATED SLC23A1 WILD-TYPE
  CLUS_1               2               161
  CLUS_2               1               160
  CLUS_3               3               167
  CLUS_4               0               175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC23A1 MUTATED        1      0      0      2      1      0      2
  SLC23A1 WILD-TYPE    177     62    105    127     51     61     80
D52V6, multiclass
        clus
vv       SLC23A1 MUTATED SLC23A1 WILD-TYPE
  CLUS_1               1               177
  CLUS_2               0                62
  CLUS_3               0               105
  CLUS_4               2               127
  CLUS_5               1                51
  CLUS_6               0                61
  CLUS_7               2                80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC23A1 MUTATED        0      0      4      2
  SLC23A1 WILD-TYPE    107    179    229    260
D52V7, multiclass
        clus
vv       SLC23A1 MUTATED SLC23A1 WILD-TYPE
  CLUS_1               0               107
  CLUS_2               0               179
  CLUS_3               4               229
  CLUS_4               2               260
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC23A1 MUTATED        0      0      1      0      0      0      3      0
  SLC23A1 WILD-TYPE     84     50    121     77    107     32     87     52
                   vv
clus                CLUS_9
  SLC23A1 MUTATED        2
  SLC23A1 WILD-TYPE    165
D52V8, multiclass
        clus
vv       SLC23A1 MUTATED SLC23A1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                50
  CLUS_3               1               121
  CLUS_4               0                77
  CLUS_5               0               107
  CLUS_6               0                32
  CLUS_7               3                87
  CLUS_8               0                52
  CLUS_9               2               165
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC23A1 MUTATED        2      1      3
  SLC23A1 WILD-TYPE    327    163    279
D52V9, multiclass
        clus
vv       SLC23A1 MUTATED SLC23A1 WILD-TYPE
  CLUS_1               2               327
  CLUS_2               1               163
  CLUS_3               3               279
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC23A1 MUTATED        0      0      4      2
  SLC23A1 WILD-TYPE     73    300    194    202
D52V10, multiclass
        clus
vv       SLC23A1 MUTATED SLC23A1 WILD-TYPE
  CLUS_1               0                73
  CLUS_2               0               300
  CLUS_3               4               194
  CLUS_4               2               202
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC23A1 MUTATED        1      0      0      0
  SLC23A1 WILD-TYPE    154     66     56     96
D52V11, multiclass
[1] "Remove cluster labels:" "SLC23A1 MUTATED"       
clus
  SLC23A1 MUTATED SLC23A1 WILD-TYPE 
                1               372 
       TCGA-2K-A9WE        TCGA-2Z-A9J1        TCGA-2Z-A9J2        TCGA-2Z-A9J3 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-2Z-A9J5        TCGA-2Z-A9J6        TCGA-2Z-A9JD        TCGA-2Z-A9JG 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-2Z-A9JI        TCGA-2Z-A9JJ        TCGA-2Z-A9JK        TCGA-2Z-A9JL 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-2Z-A9JM        TCGA-2Z-A9JN        TCGA-2Z-A9JO        TCGA-2Z-A9JP 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-2Z-A9JQ        TCGA-2Z-A9JR        TCGA-2Z-A9JT        TCGA-4A-A93W 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-4A-A93X        TCGA-4A-A93Y        TCGA-5P-A9JV        TCGA-5P-A9JW 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-5P-A9JY        TCGA-5P-A9JZ        TCGA-5P-A9K0        TCGA-5P-A9K6 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-5P-A9K8        TCGA-5P-A9KA        TCGA-5P-A9KC        TCGA-5P-A9KE 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-A4-7286 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7585        TCGA-A4-7734 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8312        TCGA-A4-8515 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630        TCGA-A4-A57E 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-A4-A772 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AK-3440        TCGA-AK-3458        TCGA-AK-3465        TCGA-AL-3466 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AL-7173        TCGA-AT-A5NU 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-4700        TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-4810        TCGA-B0-4811        TCGA-B0-4836        TCGA-B0-4837 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-4852        TCGA-B0-5080        TCGA-B0-5085        TCGA-B0-5088 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-5399        TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-5694        TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5699 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-5702        TCGA-B0-5705        TCGA-B0-5709        TCGA-B1-5398 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B1-A47N        TCGA-B1-A47O        TCGA-B1-A654        TCGA-B1-A656 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B1-A657        TCGA-B2-3923        TCGA-B2-3924        TCGA-B2-5633 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B2-5635        TCGA-B3-3925        TCGA-B3-4104        TCGA-B3-8121 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B4-5377        TCGA-B4-5836        TCGA-B8-4621        TCGA-B8-5545 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B8-5550        TCGA-B8-5551        TCGA-B8-5552        TCGA-B8-5553 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B9-4115        TCGA-B9-4117        TCGA-B9-5155        TCGA-B9-5156 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B9-A44B        TCGA-B9-A5W9        TCGA-B9-A69E        TCGA-B9-A8YH 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B9-A8YI        TCGA-BP-4173        TCGA-BP-4340        TCGA-BP-4761 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4770        TCGA-BP-4787        TCGA-BP-4789        TCGA-BP-4790 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4804        TCGA-BP-4807        TCGA-BP-4961        TCGA-BP-4967 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4968        TCGA-BP-4970        TCGA-BP-4974        TCGA-BP-4976 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4981        TCGA-BP-4982        TCGA-BP-4985        TCGA-BP-4988 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4989        TCGA-BP-4992        TCGA-BP-4995        TCGA-BP-4998 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-5001        TCGA-BP-5008        TCGA-BP-5009        TCGA-BQ-5876 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5877        TCGA-BQ-5878        TCGA-BQ-5879        TCGA-BQ-5880 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5881        TCGA-BQ-5882        TCGA-BQ-5883        TCGA-BQ-5884 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5886        TCGA-BQ-5887        TCGA-BQ-5888        TCGA-BQ-5889 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5890        TCGA-BQ-5891        TCGA-BQ-5892        TCGA-BQ-5893 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5894        TCGA-BQ-7044        TCGA-BQ-7045        TCGA-BQ-7046 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-7048        TCGA-BQ-7049        TCGA-BQ-7050        TCGA-BQ-7051 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-7053        TCGA-BQ-7055        TCGA-BQ-7056        TCGA-BQ-7058 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-7059        TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4876        TCGA-CJ-4878 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4889        TCGA-CJ-4890 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4895        TCGA-CJ-4900        TCGA-CJ-5671        TCGA-CJ-5675 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5681        TCGA-CJ-5683        TCGA-CJ-5686 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CW-5585        TCGA-CW-5589 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CW-6087        TCGA-CZ-4854        TCGA-CZ-4857        TCGA-CZ-4858 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CZ-5453        TCGA-CZ-5454        TCGA-CZ-5455        TCGA-CZ-5457 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5462        TCGA-CZ-5463        TCGA-CZ-5466 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CZ-5467        TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5989 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DV-5565        TCGA-DV-5566        TCGA-DV-5569        TCGA-DW-5560 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DW-5561        TCGA-DW-7834        TCGA-DW-7836        TCGA-DW-7837 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DW-7838        TCGA-DW-7839        TCGA-DW-7840        TCGA-DW-7842 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DZ-6131        TCGA-DZ-6132        TCGA-DZ-6133        TCGA-DZ-6134 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DZ-6135        TCGA-EU-5904        TCGA-EV-5901        TCGA-EV-5902 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-EV-5903        TCGA-F9-A4JJ        TCGA-F9-A7Q0        TCGA-F9-A8NY 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-F9-A97G        TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-G7-6793        TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-7501 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-G7-7502        TCGA-G7-A4TM        TCGA-G7-A8LB        TCGA-G7-A8LC 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-G7-A8LD        TCGA-G7-A8LE        TCGA-GL-6846        TCGA-GL-7773 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-GL-7966        TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59T 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-GL-A9DC        TCGA-GL-A9DD        TCGA-GL-A9DE        TCGA-HE-7128 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-HE-7130        TCGA-HE-A5NJ        TCGA-HE-A5NL        TCGA-IA-A40U 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-IA-A40X        TCGA-IA-A40Y        TCGA-IA-A83S        TCGA-IA-A83T 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-IA-A83V        TCGA-IA-A83W        TCGA-IZ-8195        TCGA-IZ-8196 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-IZ-A6M9        TCGA-J7-6720        TCGA-J7-8537        TCGA-J7-A8I2 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8323        TCGA-KL-8324        TCGA-KL-8327        TCGA-KL-8328 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8331        TCGA-KL-8332        TCGA-KL-8333        TCGA-KL-8334 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8335        TCGA-KL-8336        TCGA-KL-8338        TCGA-KL-8339 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8340        TCGA-KL-8341        TCGA-KL-8342        TCGA-KL-8343 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8344        TCGA-KL-8345        TCGA-KM-8438        TCGA-KM-8439 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KM-8441        TCGA-KM-8442        TCGA-KM-8639        TCGA-KN-8418 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8419        TCGA-KN-8422        TCGA-KN-8423        TCGA-KN-8424 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8426        TCGA-KN-8427        TCGA-KN-8428        TCGA-KN-8429 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8430        TCGA-KN-8431        TCGA-KN-8432        TCGA-KN-8433 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8434        TCGA-KN-8436        TCGA-KN-8437        TCGA-KO-8404 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KO-8405        TCGA-KO-8408        TCGA-KO-8409        TCGA-KO-8410 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KO-8413        TCGA-KO-8415        TCGA-KO-8416        TCGA-KO-8417 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KV-A6GD        TCGA-KV-A6GE        TCGA-KV-A74V        TCGA-MH-A854 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-MH-A855        TCGA-MH-A856        TCGA-MH-A857        TCGA-O9-A75Z 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-P4-A5E6        TCGA-P4-A5E7        TCGA-P4-A5E8        TCGA-P4-A5EA 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-P4-AAVL        TCGA-P4-AAVM        TCGA-PJ-A5Z8        TCGA-PJ-A5Z9 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-Q2-A5QZ        TCGA-SX-A71R        TCGA-SX-A71S        TCGA-SX-A71U 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-SX-A71W        TCGA-SX-A7SL        TCGA-SX-A7SM        TCGA-SX-A7SN 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-SX-A7SO        TCGA-SX-A7SP        TCGA-SX-A7SR        TCGA-SX-A7SU 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-UZ-A9PJ        TCGA-UZ-A9PK        TCGA-UZ-A9PL        TCGA-UZ-A9PN 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-UZ-A9PO        TCGA-UZ-A9PP        TCGA-UZ-A9PR        TCGA-UZ-A9PU 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-UZ-A9PV        TCGA-UZ-A9PX        TCGA-UZ-A9PZ        TCGA-V9-A7HT 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-WN-A9G9        TCGA-WN-AB4C        TCGA-Y8-A897        TCGA-Y8-A898 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-Y8-A8RY        TCGA-Y8-A8RZ        TCGA-Y8-A8S0        TCGA-Y8-A8S1 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC23A1 MUTATED        1      0      0      0      0      0      0
  SLC23A1 WILD-TYPE     89     73     50     19     37     58     46
D52V12, multiclass
[1] "Remove cluster labels:" "SLC23A1 MUTATED"       
clus
  SLC23A1 MUTATED SLC23A1 WILD-TYPE 
                1               372 
       TCGA-2K-A9WE        TCGA-2Z-A9J1        TCGA-2Z-A9J2        TCGA-2Z-A9J3 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-2Z-A9J5        TCGA-2Z-A9J6        TCGA-2Z-A9JD        TCGA-2Z-A9JG 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-2Z-A9JI        TCGA-2Z-A9JJ        TCGA-2Z-A9JK        TCGA-2Z-A9JL 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-2Z-A9JM        TCGA-2Z-A9JN        TCGA-2Z-A9JO        TCGA-2Z-A9JP 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-2Z-A9JQ        TCGA-2Z-A9JR        TCGA-2Z-A9JT        TCGA-4A-A93W 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-4A-A93X        TCGA-4A-A93Y        TCGA-5P-A9JV        TCGA-5P-A9JW 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-5P-A9JY        TCGA-5P-A9JZ        TCGA-5P-A9K0        TCGA-5P-A9K6 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-5P-A9K8        TCGA-5P-A9KA        TCGA-5P-A9KC        TCGA-5P-A9KE 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A3-3317        TCGA-A3-3358        TCGA-A3-3387        TCGA-A4-7286 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-7287        TCGA-A4-7288        TCGA-A4-7585        TCGA-A4-7734 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-7828        TCGA-A4-7915        TCGA-A4-7996        TCGA-A4-7997 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-8098        TCGA-A4-8310        TCGA-A4-8312        TCGA-A4-8515 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-8517        TCGA-A4-8518        TCGA-A4-8630        TCGA-A4-A57E 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-A4-A5XZ        TCGA-A4-A5Y0        TCGA-A4-A5Y1        TCGA-A4-A772 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AK-3440        TCGA-AK-3458        TCGA-AK-3465        TCGA-AL-3466 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-AL-3472        TCGA-AL-3473        TCGA-AL-7173        TCGA-AT-A5NU 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-4700        TCGA-B0-4706        TCGA-B0-4710        TCGA-B0-4712 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-4810        TCGA-B0-4811        TCGA-B0-4836        TCGA-B0-4837 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-4852        TCGA-B0-5080        TCGA-B0-5085        TCGA-B0-5088 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-5399        TCGA-B0-5691        TCGA-B0-5692        TCGA-B0-5693 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-5694        TCGA-B0-5695        TCGA-B0-5696        TCGA-B0-5699 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B0-5702        TCGA-B0-5705        TCGA-B0-5709        TCGA-B1-5398 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B1-A47N        TCGA-B1-A47O        TCGA-B1-A654        TCGA-B1-A656 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B1-A657        TCGA-B2-3923        TCGA-B2-3924        TCGA-B2-5633 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B2-5635        TCGA-B3-3925        TCGA-B3-4104        TCGA-B3-8121 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B4-5377        TCGA-B4-5836        TCGA-B8-4621        TCGA-B8-5545 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B8-5550        TCGA-B8-5551        TCGA-B8-5552        TCGA-B8-5553 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B9-4115        TCGA-B9-4117        TCGA-B9-5155        TCGA-B9-5156 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B9-A44B        TCGA-B9-A5W9        TCGA-B9-A69E        TCGA-B9-A8YH 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-B9-A8YI        TCGA-BP-4173        TCGA-BP-4340        TCGA-BP-4761 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4770        TCGA-BP-4787        TCGA-BP-4789        TCGA-BP-4790 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4804        TCGA-BP-4807        TCGA-BP-4961        TCGA-BP-4967 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4968        TCGA-BP-4970        TCGA-BP-4974        TCGA-BP-4976 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4981        TCGA-BP-4982        TCGA-BP-4985        TCGA-BP-4988 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-4989        TCGA-BP-4992        TCGA-BP-4995        TCGA-BP-4998 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BP-5001        TCGA-BP-5008        TCGA-BP-5009        TCGA-BQ-5876 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5877        TCGA-BQ-5878        TCGA-BQ-5879        TCGA-BQ-5880 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5881        TCGA-BQ-5882        TCGA-BQ-5883        TCGA-BQ-5884 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5886        TCGA-BQ-5887        TCGA-BQ-5888        TCGA-BQ-5889 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5890        TCGA-BQ-5891        TCGA-BQ-5892        TCGA-BQ-5893 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-5894        TCGA-BQ-7044        TCGA-BQ-7045        TCGA-BQ-7046 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-7048        TCGA-BQ-7049        TCGA-BQ-7050        TCGA-BQ-7051 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-7053        TCGA-BQ-7055        TCGA-BQ-7056        TCGA-BQ-7058 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-BQ-7059        TCGA-BQ-7060        TCGA-BQ-7061        TCGA-BQ-7062 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4870        TCGA-CJ-4875        TCGA-CJ-4876        TCGA-CJ-4878 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4881        TCGA-CJ-4887        TCGA-CJ-4889        TCGA-CJ-4890 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-4895        TCGA-CJ-4900        TCGA-CJ-5671        TCGA-CJ-5675 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-5676        TCGA-CJ-5681        TCGA-CJ-5683        TCGA-CJ-5686 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CJ-6031        TCGA-CJ-6032        TCGA-CW-5585        TCGA-CW-5589 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CW-6087        TCGA-CZ-4854        TCGA-CZ-4857        TCGA-CZ-4858 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CZ-5453        TCGA-CZ-5454        TCGA-CZ-5455        TCGA-CZ-5457 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CZ-5459        TCGA-CZ-5462        TCGA-CZ-5463        TCGA-CZ-5466 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-CZ-5467        TCGA-CZ-5469        TCGA-CZ-5470        TCGA-CZ-5989 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DV-5565        TCGA-DV-5566        TCGA-DV-5569        TCGA-DW-5560 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DW-5561        TCGA-DW-7834        TCGA-DW-7836        TCGA-DW-7837 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DW-7838        TCGA-DW-7839        TCGA-DW-7840        TCGA-DW-7842 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DZ-6131        TCGA-DZ-6132        TCGA-DZ-6133        TCGA-DZ-6134 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-DZ-6135        TCGA-EU-5904        TCGA-EV-5901        TCGA-EV-5902 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-EV-5903        TCGA-F9-A4JJ        TCGA-F9-A7Q0        TCGA-F9-A8NY 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-F9-A97G        TCGA-G7-6789        TCGA-G7-6790        TCGA-G7-6792 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-G7-6793        TCGA-G7-6795        TCGA-G7-6796        TCGA-G7-7501 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-G7-7502        TCGA-G7-A4TM        TCGA-G7-A8LB        TCGA-G7-A8LC 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-G7-A8LD        TCGA-G7-A8LE        TCGA-GL-6846        TCGA-GL-7773 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-GL-7966        TCGA-GL-8500        TCGA-GL-A4EM        TCGA-GL-A59T 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-GL-A9DC        TCGA-GL-A9DD        TCGA-GL-A9DE        TCGA-HE-7128 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-HE-7130        TCGA-HE-A5NJ        TCGA-HE-A5NL        TCGA-IA-A40U 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-IA-A40X        TCGA-IA-A40Y        TCGA-IA-A83S        TCGA-IA-A83T 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-IA-A83V        TCGA-IA-A83W        TCGA-IZ-8195        TCGA-IZ-8196 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-IZ-A6M9        TCGA-J7-6720        TCGA-J7-8537        TCGA-J7-A8I2 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8323        TCGA-KL-8324        TCGA-KL-8327        TCGA-KL-8328 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8331        TCGA-KL-8332        TCGA-KL-8333        TCGA-KL-8334 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8335        TCGA-KL-8336        TCGA-KL-8338        TCGA-KL-8339 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8340        TCGA-KL-8341        TCGA-KL-8342        TCGA-KL-8343 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KL-8344        TCGA-KL-8345        TCGA-KM-8438        TCGA-KM-8439 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KM-8441        TCGA-KM-8442        TCGA-KM-8639        TCGA-KN-8418 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8419        TCGA-KN-8422        TCGA-KN-8423        TCGA-KN-8424 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8426        TCGA-KN-8427        TCGA-KN-8428        TCGA-KN-8429 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8430        TCGA-KN-8431        TCGA-KN-8432        TCGA-KN-8433 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KN-8434        TCGA-KN-8436        TCGA-KN-8437        TCGA-KO-8404 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KO-8405        TCGA-KO-8408        TCGA-KO-8409        TCGA-KO-8410 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KO-8413        TCGA-KO-8415        TCGA-KO-8416        TCGA-KO-8417 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-KV-A6GD        TCGA-KV-A6GE        TCGA-KV-A74V        TCGA-MH-A854 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-MH-A855        TCGA-MH-A856        TCGA-MH-A857        TCGA-O9-A75Z 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-P4-A5E6        TCGA-P4-A5E7        TCGA-P4-A5E8        TCGA-P4-A5EA 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-P4-AAVL        TCGA-P4-AAVM        TCGA-PJ-A5Z8        TCGA-PJ-A5Z9 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-Q2-A5QZ        TCGA-SX-A71R        TCGA-SX-A71S        TCGA-SX-A71U 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-SX-A71W        TCGA-SX-A7SL        TCGA-SX-A7SM        TCGA-SX-A7SN 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-SX-A7SO        TCGA-SX-A7SP        TCGA-SX-A7SR        TCGA-SX-A7SU 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-UZ-A9PJ        TCGA-UZ-A9PK        TCGA-UZ-A9PL        TCGA-UZ-A9PN 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-UZ-A9PO        TCGA-UZ-A9PP        TCGA-UZ-A9PR        TCGA-UZ-A9PU 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-UZ-A9PV        TCGA-UZ-A9PX        TCGA-UZ-A9PZ        TCGA-V9-A7HT 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-WN-A9G9        TCGA-WN-AB4C        TCGA-Y8-A897        TCGA-Y8-A898 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 
       TCGA-Y8-A8RY        TCGA-Y8-A8RZ        TCGA-Y8-A8S0        TCGA-Y8-A8S1 
"SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" "SLC23A1 WILD-TYPE" 

Clustering(53) Variable = RILPL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RILPL1 MUTATED        0      0      0      0
  RILPL1 WILD-TYPE     17     16     10     15
D53V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RILPL1 MUTATED        0      0      0      0      0
  RILPL1 WILD-TYPE      7     16     16     10      9
D53V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RILPL1 MUTATED        3      1      1
  RILPL1 WILD-TYPE    310    167    297
D53V3, multiclass
        clus
vv       RILPL1 MUTATED RILPL1 WILD-TYPE
  CLUS_1              3              310
  CLUS_2              1              167
  CLUS_3              1              297
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RILPL1 MUTATED        2      0      1      1      1
  RILPL1 WILD-TYPE     93    111    141     62    184
D53V4, multiclass
        clus
vv       RILPL1 MUTATED RILPL1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0              111
  CLUS_3              1              141
  CLUS_4              1               62
  CLUS_5              1              184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RILPL1 MUTATED        1      2      2      0
  RILPL1 WILD-TYPE    162    159    168    175
D53V5, multiclass
        clus
vv       RILPL1 MUTATED RILPL1 WILD-TYPE
  CLUS_1              1              162
  CLUS_2              2              159
  CLUS_3              2              168
  CLUS_4              0              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RILPL1 MUTATED        0      1      0      2      0      1      1
  RILPL1 WILD-TYPE    178     61    105    127     52     60     81
D53V6, multiclass
        clus
vv       RILPL1 MUTATED RILPL1 WILD-TYPE
  CLUS_1              0              178
  CLUS_2              1               61
  CLUS_3              0              105
  CLUS_4              2              127
  CLUS_5              0               52
  CLUS_6              1               60
  CLUS_7              1               81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RILPL1 MUTATED        2      0      1      2
  RILPL1 WILD-TYPE    105    179    232    260
D53V7, multiclass
        clus
vv       RILPL1 MUTATED RILPL1 WILD-TYPE
  CLUS_1              2              105
  CLUS_2              0              179
  CLUS_3              1              232
  CLUS_4              2              260
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RILPL1 MUTATED        2      0      0      1      0      0      0      1
  RILPL1 WILD-TYPE     82     50    122     76    107     32     90     51
                  vv
clus               CLUS_9
  RILPL1 MUTATED        1
  RILPL1 WILD-TYPE    166
D53V8, multiclass
        clus
vv       RILPL1 MUTATED RILPL1 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              0               50
  CLUS_3              0              122
  CLUS_4              1               76
  CLUS_5              0              107
  CLUS_6              0               32
  CLUS_7              0               90
  CLUS_8              1               51
  CLUS_9              1              166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RILPL1 MUTATED        3      1      1
  RILPL1 WILD-TYPE    326    163    281
D53V9, multiclass
        clus
vv       RILPL1 MUTATED RILPL1 WILD-TYPE
  CLUS_1              3              326
  CLUS_2              1              163
  CLUS_3              1              281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RILPL1 MUTATED        2      1      1      1
  RILPL1 WILD-TYPE     71    299    197    203
D53V10, multiclass
        clus
vv       RILPL1 MUTATED RILPL1 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              1              299
  CLUS_3              1              197
  CLUS_4              1              203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RILPL1 MUTATED        0      1      1      0
  RILPL1 WILD-TYPE    155     65     55     96
D53V11, multiclass
[1] "Remove cluster labels:" "RILPL1 MUTATED"        
clus
  RILPL1 MUTATED RILPL1 WILD-TYPE 
               2              371 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J2       TCGA-2Z-A9J3 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-2Z-A9J5       TCGA-2Z-A9J6       TCGA-2Z-A9JD       TCGA-2Z-A9JG 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JK       TCGA-2Z-A9JL 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-2Z-A9JM       TCGA-2Z-A9JN       TCGA-2Z-A9JO       TCGA-2Z-A9JP 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-2Z-A9JQ       TCGA-2Z-A9JR       TCGA-2Z-A9JT       TCGA-4A-A93W 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JV       TCGA-5P-A9JW 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9JZ       TCGA-5P-A9K0       TCGA-5P-A9K6 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-5P-A9K8       TCGA-5P-A9KA       TCGA-5P-A9KC       TCGA-5P-A9KE 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-A4-A772 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B0-4700       TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B0-4852       TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B0-5399       TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B1-A47N       TCGA-B1-A47O       TCGA-B1-A654       TCGA-B1-A656 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-5633 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104       TCGA-B3-8121 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621       TCGA-B8-5545 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5155       TCGA-B9-5156 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B9-A8YI       TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BP-4770       TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BP-4968       TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BP-4989       TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BP-5001       TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-7048       TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7836       TCGA-DW-7837 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-DZ-6135       TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-F9-A7Q0       TCGA-F9-A8NY 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-F9-A97G       TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-G7-7502       TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-G7-A8LD       TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-GL-A9DC       TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-HE-A5NL       TCGA-IA-A40U 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IA-A83S       TCGA-IA-A83T 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-IA-A83V       TCGA-IA-A83W       TCGA-IZ-8195       TCGA-IZ-8196 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537       TCGA-J7-A8I2 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KL-8323       TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KL-8331       TCGA-KL-8332       TCGA-KL-8334       TCGA-KL-8335 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-KV-A74V       TCGA-MH-A854       TCGA-MH-A855 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-MH-A856       TCGA-MH-A857       TCGA-O9-A75Z       TCGA-P4-A5E6 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA       TCGA-P4-AAVL 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-P4-AAVM       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-SX-A71R       TCGA-SX-A71S       TCGA-SX-A71U       TCGA-SX-A71W 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-SX-A7SL       TCGA-SX-A7SN       TCGA-SX-A7SO       TCGA-SX-A7SP 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-SX-A7SR       TCGA-SX-A7SS       TCGA-SX-A7SU       TCGA-UZ-A9PJ 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PN       TCGA-UZ-A9PO 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PU       TCGA-UZ-A9PV 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-UZ-A9PX       TCGA-UZ-A9PZ       TCGA-V9-A7HT       TCGA-WN-A9G9 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-WN-AB4C       TCGA-Y8-A897       TCGA-Y8-A898       TCGA-Y8-A8RY 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RILPL1 MUTATED        0      1      0      0      0      0      1
  RILPL1 WILD-TYPE     90     72     50     19     37     58     45
D53V12, multiclass
[1] "Remove cluster labels:" "RILPL1 MUTATED"        
clus
  RILPL1 MUTATED RILPL1 WILD-TYPE 
               2              371 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J2       TCGA-2Z-A9J3 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-2Z-A9J5       TCGA-2Z-A9J6       TCGA-2Z-A9JD       TCGA-2Z-A9JG 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JK       TCGA-2Z-A9JL 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-2Z-A9JM       TCGA-2Z-A9JN       TCGA-2Z-A9JO       TCGA-2Z-A9JP 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-2Z-A9JQ       TCGA-2Z-A9JR       TCGA-2Z-A9JT       TCGA-4A-A93W 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JV       TCGA-5P-A9JW 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9JZ       TCGA-5P-A9K0       TCGA-5P-A9K6 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-5P-A9K8       TCGA-5P-A9KA       TCGA-5P-A9KC       TCGA-5P-A9KE 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-A4-A772 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B0-4700       TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B0-4852       TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B0-5399       TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B1-A47N       TCGA-B1-A47O       TCGA-B1-A654       TCGA-B1-A656 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-5633 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104       TCGA-B3-8121 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621       TCGA-B8-5545 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5155       TCGA-B9-5156 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-B9-A8YI       TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BP-4770       TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BP-4968       TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BP-4989       TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BP-5001       TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-7048       TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7836       TCGA-DW-7837 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-DZ-6135       TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-F9-A7Q0       TCGA-F9-A8NY 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-F9-A97G       TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-G7-7502       TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-G7-A8LD       TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-GL-A9DC       TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-HE-A5NL       TCGA-IA-A40U 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IA-A83S       TCGA-IA-A83T 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-IA-A83V       TCGA-IA-A83W       TCGA-IZ-8195       TCGA-IZ-8196 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537       TCGA-J7-A8I2 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KL-8323       TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KL-8331       TCGA-KL-8332       TCGA-KL-8334       TCGA-KL-8335 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-KV-A74V       TCGA-MH-A854       TCGA-MH-A855 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-MH-A856       TCGA-MH-A857       TCGA-O9-A75Z       TCGA-P4-A5E6 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA       TCGA-P4-AAVL 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-P4-AAVM       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-SX-A71R       TCGA-SX-A71S       TCGA-SX-A71U       TCGA-SX-A71W 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-SX-A7SL       TCGA-SX-A7SN       TCGA-SX-A7SO       TCGA-SX-A7SP 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-SX-A7SR       TCGA-SX-A7SS       TCGA-SX-A7SU       TCGA-UZ-A9PJ 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PN       TCGA-UZ-A9PO 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PU       TCGA-UZ-A9PV 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-UZ-A9PX       TCGA-UZ-A9PZ       TCGA-V9-A7HT       TCGA-WN-A9G9 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-WN-AB4C       TCGA-Y8-A897       TCGA-Y8-A898       TCGA-Y8-A8RY 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 
      TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" "RILPL1 WILD-TYPE" 

Clustering(54) Variable = NIPBL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        0      1      0      0
  NIPBL WILD-TYPE     17     15     10     15
D54V1, multiclass
[1] "Remove cluster labels:" "NIPBL MUTATED"         
clus
  NIPBL MUTATED NIPBL WILD-TYPE 
              1              57 
     TCGA-A3-3311      TCGA-A3-3313      TCGA-A3-3317      TCGA-A3-3322 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3374      TCGA-AK-3427 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-AL-3468      TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-B3-3925      TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-B8-4143      TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-B8-4619      TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-B9-4115      TCGA-B9-4116      TCGA-B9-4117      TCGA-B9-4617 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-BP-4161      TCGA-BP-4162      TCGA-BP-4164      TCGA-BP-4167 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-CJ-4634      TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-CJ-4639      TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-CJ-4644 
"NIPBL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NIPBL MUTATED        0      1      0      0      0
  NIPBL WILD-TYPE      7     15     16     10      9
D54V2, multiclass
[1] "Remove cluster labels:" "NIPBL MUTATED"         
clus
  NIPBL MUTATED NIPBL WILD-TYPE 
              1              57 
     TCGA-A3-3311      TCGA-A3-3313      TCGA-A3-3317      TCGA-A3-3322 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-A3-3323      TCGA-A3-3326      TCGA-A3-3331      TCGA-A3-3347 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-A3-3349      TCGA-A3-3362      TCGA-A3-3374      TCGA-AK-3427 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3443      TCGA-AK-3453      TCGA-AK-3455 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-AK-3456      TCGA-AK-3465      TCGA-AL-3466      TCGA-AL-3467 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-AL-3468      TCGA-AL-3472      TCGA-AL-3473      TCGA-AS-3777 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-4098      TCGA-B2-4099 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-B3-3925      TCGA-B3-3926      TCGA-B3-4103      TCGA-B3-4104 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-B8-4143      TCGA-B8-4148      TCGA-B8-4151      TCGA-B8-4154 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-B8-4619      TCGA-B8-4620      TCGA-B9-4113      TCGA-B9-4114 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-B9-4115      TCGA-B9-4116      TCGA-B9-4117      TCGA-B9-4617 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-BP-4161      TCGA-BP-4162      TCGA-BP-4164      TCGA-BP-4167 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-CJ-4634      TCGA-CJ-4636      TCGA-CJ-4637      TCGA-CJ-4638 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-CJ-4639      TCGA-CJ-4640      TCGA-CJ-4641      TCGA-CJ-4643 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-CJ-4644 
"NIPBL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED       10      2      3
  NIPBL WILD-TYPE    303    166    295
D54V3, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1            10             303
  CLUS_2             2             166
  CLUS_3             3             295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NIPBL MUTATED        2      1      2      2      7
  NIPBL WILD-TYPE     93    110    140     61    178
D54V4, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1             110
  CLUS_3             2             140
  CLUS_4             2              61
  CLUS_5             7             178
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        3      3      1      4
  NIPBL WILD-TYPE    160    158    169    171
D54V5, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             3             160
  CLUS_2             3             158
  CLUS_3             1             169
  CLUS_4             4             171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NIPBL MUTATED        3      0      2      1      1      3      1
  NIPBL WILD-TYPE    175     62    103    128     51     58     81
D54V6, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             3             175
  CLUS_2             0              62
  CLUS_3             2             103
  CLUS_4             1             128
  CLUS_5             1              51
  CLUS_6             3              58
  CLUS_7             1              81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        2      4      2      7
  NIPBL WILD-TYPE    105    175    231    255
D54V7, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2             105
  CLUS_2             4             175
  CLUS_3             2             231
  CLUS_4             7             255
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NIPBL MUTATED        2      1      1      2      1      1      0      2
  NIPBL WILD-TYPE     82     49    121     75    106     31     90     50
                 vv
clus              CLUS_9
  NIPBL MUTATED        5
  NIPBL WILD-TYPE    162
D54V8, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2              82
  CLUS_2             1              49
  CLUS_3             1             121
  CLUS_4             2              75
  CLUS_5             1             106
  CLUS_6             1              31
  CLUS_7             0              90
  CLUS_8             2              50
  CLUS_9             5             162
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED       10      1      4
  NIPBL WILD-TYPE    319    163    278
D54V9, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1            10             319
  CLUS_2             1             163
  CLUS_3             4             278
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        2      5      2      6
  NIPBL WILD-TYPE     71    295    196    198
D54V10, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2              71
  CLUS_2             5             295
  CLUS_3             2             196
  CLUS_4             6             198
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        5      1      1      1
  NIPBL WILD-TYPE    150     65     55     95
D54V11, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             5             150
  CLUS_2             1              65
  CLUS_3             1              55
  CLUS_4             1              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NIPBL MUTATED        2      2      2      0      0      1      1
  NIPBL WILD-TYPE     88     71     48     19     37     57     45
D54V12, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2              88
  CLUS_2             2              71
  CLUS_3             2              48
  CLUS_4             0              19
  CLUS_5             0              37
  CLUS_6             1              57
  CLUS_7             1              45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = FAM47A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47A MUTATED        1      1      0      0
  FAM47A WILD-TYPE     16     15     10     15
D55V1, multiclass
[1] "Remove cluster labels:" "FAM47A MUTATED"        
clus
  FAM47A MUTATED FAM47A WILD-TYPE 
               2               56 
      TCGA-A3-3311       TCGA-A3-3313       TCGA-A3-3317       TCGA-A3-3322 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3374       TCGA-AK-3427 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AL-3468       TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B8-4619       TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-B9-4117       TCGA-B9-4617 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4161       TCGA-BP-4162       TCGA-BP-4163       TCGA-BP-4167 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4634       TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4639 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47A MUTATED        0      1      0      1      0
  FAM47A WILD-TYPE      7     15     16      9      9
D55V2, multiclass
[1] "Remove cluster labels:" "FAM47A MUTATED"        
clus
  FAM47A MUTATED FAM47A WILD-TYPE 
               2               56 
      TCGA-A3-3311       TCGA-A3-3313       TCGA-A3-3317       TCGA-A3-3322 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A3-3323       TCGA-A3-3326       TCGA-A3-3331       TCGA-A3-3347 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A3-3349       TCGA-A3-3362       TCGA-A3-3374       TCGA-AK-3427 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3443       TCGA-AK-3453       TCGA-AK-3455 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AK-3456       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3467 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AL-3468       TCGA-AL-3472       TCGA-AL-3473       TCGA-AS-3777 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-4098       TCGA-B2-4099 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B3-3925       TCGA-B3-3926       TCGA-B3-4103       TCGA-B3-4104 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4148       TCGA-B8-4151       TCGA-B8-4154 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B8-4619       TCGA-B8-4620       TCGA-B9-4113       TCGA-B9-4114 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4116       TCGA-B9-4117       TCGA-B9-4617 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4161       TCGA-BP-4162       TCGA-BP-4163       TCGA-BP-4167 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4634       TCGA-CJ-4636       TCGA-CJ-4637       TCGA-CJ-4639 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4640       TCGA-CJ-4641       TCGA-CJ-4643       TCGA-CJ-4644 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47A MUTATED        1      1      4
  FAM47A WILD-TYPE    312    167    294
D55V3, multiclass
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  CLUS_1              1              312
  CLUS_2              1              167
  CLUS_3              4              294
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47A MUTATED        1      1      0      1      1
  FAM47A WILD-TYPE     94    110    142     62    184
D55V4, multiclass
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  CLUS_1              1               94
  CLUS_2              1              110
  CLUS_3              0              142
  CLUS_4              1               62
  CLUS_5              1              184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47A MUTATED        0      3      2      1
  FAM47A WILD-TYPE    163    158    168    174
D55V5, multiclass
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  CLUS_1              0              163
  CLUS_2              3              158
  CLUS_3              2              168
  CLUS_4              1              174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM47A MUTATED        2      1      1      2      0      0      0
  FAM47A WILD-TYPE    176     61    104    127     52     61     82
D55V6, multiclass
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  CLUS_1              2              176
  CLUS_2              1               61
  CLUS_3              1              104
  CLUS_4              2              127
  CLUS_5              0               52
  CLUS_6              0               61
  CLUS_7              0               82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47A MUTATED        1      1      2      2
  FAM47A WILD-TYPE    106    178    231    260
D55V7, multiclass
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  CLUS_1              1              106
  CLUS_2              1              178
  CLUS_3              2              231
  CLUS_4              2              260
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM47A MUTATED        1      0      0      1      0      1      2      1
  FAM47A WILD-TYPE     83     50    122     76    107     31     88     51
                  vv
clus               CLUS_9
  FAM47A MUTATED        0
  FAM47A WILD-TYPE    167
D55V8, multiclass
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               50
  CLUS_3              0              122
  CLUS_4              1               76
  CLUS_5              0              107
  CLUS_6              1               31
  CLUS_7              2               88
  CLUS_8              1               51
  CLUS_9              0              167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47A MUTATED        2      0      4
  FAM47A WILD-TYPE    327    164    278
D55V9, multiclass
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  CLUS_1              2              327
  CLUS_2              0              164
  CLUS_3              4              278
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47A MUTATED        1      2      2      1
  FAM47A WILD-TYPE     72    298    196    203
D55V10, multiclass
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  CLUS_1              1               72
  CLUS_2              2              298
  CLUS_3              2              196
  CLUS_4              1              203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47A MUTATED        0      1      0      0
  FAM47A WILD-TYPE    155     65     56     96
D55V11, multiclass
[1] "Remove cluster labels:" "FAM47A MUTATED"        
clus
  FAM47A MUTATED FAM47A WILD-TYPE 
               1              372 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J2       TCGA-2Z-A9J3 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-2Z-A9J5       TCGA-2Z-A9J6       TCGA-2Z-A9JD       TCGA-2Z-A9JG 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JK       TCGA-2Z-A9JL 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-2Z-A9JM       TCGA-2Z-A9JN       TCGA-2Z-A9JO       TCGA-2Z-A9JP 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-2Z-A9JQ       TCGA-2Z-A9JR       TCGA-2Z-A9JT       TCGA-4A-A93W 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JV       TCGA-5P-A9JW 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9JZ       TCGA-5P-A9K0       TCGA-5P-A9K6 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-5P-A9K8       TCGA-5P-A9KA       TCGA-5P-A9KC       TCGA-5P-A9KE 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-A4-A772 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-4700       TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-4852       TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-5399       TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B1-A47N       TCGA-B1-A47O       TCGA-B1-A654       TCGA-B1-A656 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-5633 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104       TCGA-B3-8121 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621       TCGA-B8-5545 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5155       TCGA-B9-5156 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B9-A8YI       TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4770       TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4968       TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4989       TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-5001       TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-7048       TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7836       TCGA-DW-7837 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DZ-6135       TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-F9-A7Q0       TCGA-F9-A8NY 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-F9-A97G       TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-G7-7502       TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-G7-A8LD       TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-GL-A9DC       TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-HE-A5NL       TCGA-IA-A40U 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IA-A83S       TCGA-IA-A83T 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-IA-A83V       TCGA-IA-A83W       TCGA-IZ-8195       TCGA-IZ-8196 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537       TCGA-J7-A8I2 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8323       TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8331       TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8335       TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8340       TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8344       TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KM-8441       TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8419       TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8426       TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8430       TCGA-KN-8431       TCGA-KN-8433       TCGA-KN-8434 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-KV-A74V       TCGA-MH-A854       TCGA-MH-A855 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-MH-A856       TCGA-MH-A857       TCGA-O9-A75Z       TCGA-P4-A5E6 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA       TCGA-P4-AAVL 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-P4-AAVM       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-SX-A71R       TCGA-SX-A71S       TCGA-SX-A71U       TCGA-SX-A71W 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-SX-A7SL       TCGA-SX-A7SM       TCGA-SX-A7SN       TCGA-SX-A7SO 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-SX-A7SP       TCGA-SX-A7SR       TCGA-SX-A7SS       TCGA-SX-A7SU 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-UZ-A9PJ       TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PN 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-UZ-A9PO       TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PU 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-UZ-A9PV       TCGA-UZ-A9PX       TCGA-UZ-A9PZ       TCGA-V9-A7HT 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-WN-A9G9       TCGA-WN-AB4C       TCGA-Y8-A897       TCGA-Y8-A898 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-Y8-A8RY       TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM47A MUTATED        0      0      0      0      0      0      1
  FAM47A WILD-TYPE     90     73     50     19     37     58     45
D55V12, multiclass
[1] "Remove cluster labels:" "FAM47A MUTATED"        
clus
  FAM47A MUTATED FAM47A WILD-TYPE 
               1              372 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J2       TCGA-2Z-A9J3 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-2Z-A9J5       TCGA-2Z-A9J6       TCGA-2Z-A9JD       TCGA-2Z-A9JG 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JK       TCGA-2Z-A9JL 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-2Z-A9JM       TCGA-2Z-A9JN       TCGA-2Z-A9JO       TCGA-2Z-A9JP 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-2Z-A9JQ       TCGA-2Z-A9JR       TCGA-2Z-A9JT       TCGA-4A-A93W 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JV       TCGA-5P-A9JW 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9JZ       TCGA-5P-A9K0       TCGA-5P-A9K6 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-5P-A9K8       TCGA-5P-A9KA       TCGA-5P-A9KC       TCGA-5P-A9KE 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-A4-A772 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-4700       TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-4852       TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-5399       TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B1-A47N       TCGA-B1-A47O       TCGA-B1-A654       TCGA-B1-A656 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-5633 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104       TCGA-B3-8121 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621       TCGA-B8-5545 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5155       TCGA-B9-5156 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-B9-A8YI       TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4770       TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4968       TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-4989       TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BP-5001       TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-7048       TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7836       TCGA-DW-7837 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-DZ-6135       TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-F9-A7Q0       TCGA-F9-A8NY 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-F9-A97G       TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-G7-6793       TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-G7-7502       TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-G7-A8LD       TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-GL-7966       TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-GL-A9DC       TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NJ       TCGA-HE-A5NL       TCGA-IA-A40U 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IA-A83S       TCGA-IA-A83T 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-IA-A83V       TCGA-IA-A83W       TCGA-IZ-8195       TCGA-IZ-8196 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-IZ-A6M9       TCGA-J7-6720       TCGA-J7-8537       TCGA-J7-A8I2 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8323       TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8331       TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8335       TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8340       TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KL-8344       TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KM-8441       TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8419       TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8426       TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8430       TCGA-KN-8431       TCGA-KN-8433       TCGA-KN-8434 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-KV-A74V       TCGA-MH-A854       TCGA-MH-A855 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-MH-A856       TCGA-MH-A857       TCGA-O9-A75Z       TCGA-P4-A5E6 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA       TCGA-P4-AAVL 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-P4-AAVM       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-SX-A71R       TCGA-SX-A71S       TCGA-SX-A71U       TCGA-SX-A71W 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-SX-A7SL       TCGA-SX-A7SM       TCGA-SX-A7SN       TCGA-SX-A7SO 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-SX-A7SP       TCGA-SX-A7SR       TCGA-SX-A7SS       TCGA-SX-A7SU 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-UZ-A9PJ       TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PN 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-UZ-A9PO       TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PU 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-UZ-A9PV       TCGA-UZ-A9PX       TCGA-UZ-A9PZ       TCGA-V9-A7HT 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-WN-A9G9       TCGA-WN-AB4C       TCGA-Y8-A897       TCGA-Y8-A898 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-Y8-A8RY       TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 

Clustering(56) Variable = RHEB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHEB MUTATED        0      0      0      0
  RHEB WILD-TYPE     17     16     10     15
D56V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHEB MUTATED        0      0      0      0      0
  RHEB WILD-TYPE      7     16     16     10      9
D56V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHEB MUTATED        0      1      2
  RHEB WILD-TYPE    313    167    296
D56V3, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0            313
  CLUS_2            1            167
  CLUS_3            2            296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHEB MUTATED        0      1      0      0      1
  RHEB WILD-TYPE     95    110    142     63    184
D56V4, multiclass
[1] "Remove cluster labels:" "RHEB MUTATED"          
clus
  RHEB MUTATED RHEB WILD-TYPE 
             2            594 
    TCGA-2K-A9WE     TCGA-2Z-A9J1     TCGA-2Z-A9J2     TCGA-2Z-A9J3 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-2Z-A9J5     TCGA-2Z-A9J6     TCGA-2Z-A9J7     TCGA-2Z-A9J8 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-2Z-A9JD     TCGA-2Z-A9JE     TCGA-2Z-A9JG     TCGA-2Z-A9JI 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-2Z-A9JJ     TCGA-2Z-A9JK     TCGA-2Z-A9JL     TCGA-2Z-A9JM 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-2Z-A9JN     TCGA-2Z-A9JO     TCGA-2Z-A9JP     TCGA-2Z-A9JQ 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-2Z-A9JR     TCGA-2Z-A9JS     TCGA-2Z-A9JT     TCGA-4A-A93W 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-4A-A93X     TCGA-4A-A93Y     TCGA-5P-A9JU     TCGA-5P-A9JV 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-5P-A9JW     TCGA-5P-A9JY     TCGA-5P-A9JZ     TCGA-5P-A9K0 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-5P-A9K2     TCGA-5P-A9K3     TCGA-5P-A9K6     TCGA-5P-A9K8 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-5P-A9KA     TCGA-5P-A9KC     TCGA-5P-A9KE     TCGA-5P-A9KH 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-A3-3357     TCGA-A3-3358     TCGA-A3-3367     TCGA-A3-3370 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-A3-3373     TCGA-A3-3376     TCGA-A3-3385     TCGA-A3-3387 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-A4-7286     TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7583 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-A4-7584     TCGA-A4-7585     TCGA-A4-7732     TCGA-A4-7734 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-A4-7828     TCGA-A4-7915     TCGA-A4-7996     TCGA-A4-7997 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-A4-8098     TCGA-A4-8310     TCGA-A4-8311     TCGA-A4-8312 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-A4-8515     TCGA-A4-8517     TCGA-A4-8518     TCGA-A4-8630 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-A4-A48D     TCGA-A4-A4ZT     TCGA-A4-A57E     TCGA-A4-A5DU 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-A4-A5XZ     TCGA-A4-A5Y0     TCGA-A4-A5Y1     TCGA-A4-A6HP 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-A4-A772     TCGA-A4-A7UZ     TCGA-AK-3425     TCGA-AK-3428 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AK-3431     TCGA-AK-3434     TCGA-AK-3440     TCGA-AK-3445 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AK-3450     TCGA-AK-3453     TCGA-AK-3454     TCGA-AK-3458 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AK-3460     TCGA-AK-3461     TCGA-AL-7173     TCGA-AL-A5DJ 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AT-A5NU     TCGA-B0-4690     TCGA-B0-4691     TCGA-B0-4693 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-4694     TCGA-B0-4697     TCGA-B0-4700     TCGA-B0-4703 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-4706     TCGA-B0-4707     TCGA-B0-4710     TCGA-B0-4712 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-4713     TCGA-B0-4714     TCGA-B0-4718     TCGA-B0-4810 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-4811     TCGA-B0-4813     TCGA-B0-4814     TCGA-B0-4815 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-4816     TCGA-B0-4817     TCGA-B0-4818     TCGA-B0-4819 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-4822     TCGA-B0-4823     TCGA-B0-4824     TCGA-B0-4827 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-4828     TCGA-B0-4841     TCGA-B0-4842     TCGA-B0-4843 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-4844     TCGA-B0-4845     TCGA-B0-4846     TCGA-B0-4847 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-4848     TCGA-B0-4849     TCGA-B0-4852     TCGA-B0-4945 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-5080     TCGA-B0-5083     TCGA-B0-5092     TCGA-B0-5094 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-5095     TCGA-B0-5096     TCGA-B0-5097     TCGA-B0-5098 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-5099     TCGA-B0-5100     TCGA-B0-5102     TCGA-B0-5104 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-5106     TCGA-B0-5107     TCGA-B0-5108     TCGA-B0-5109 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-5110     TCGA-B0-5113     TCGA-B0-5115     TCGA-B0-5116 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-5117     TCGA-B0-5119     TCGA-B0-5120     TCGA-B0-5121 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-5399     TCGA-B0-5400     TCGA-B0-5402     TCGA-B0-5691 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-5692     TCGA-B0-5693     TCGA-B0-5694     TCGA-B0-5695 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-5696     TCGA-B0-5697     TCGA-B0-5698     TCGA-B0-5699 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-5701     TCGA-B0-5702     TCGA-B0-5703     TCGA-B0-5705 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-5706     TCGA-B0-5707     TCGA-B0-5709     TCGA-B0-5710 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B0-5711     TCGA-B0-5712     TCGA-B0-5713     TCGA-B0-5812 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B1-5398     TCGA-B1-7332     TCGA-B1-A47M     TCGA-B1-A47N 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B1-A47O     TCGA-B1-A654     TCGA-B1-A655     TCGA-B1-A656 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B1-A657     TCGA-B2-3924     TCGA-B2-4101     TCGA-B2-5633 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B2-5635     TCGA-B2-5641     TCGA-B3-8121     TCGA-B3-A6W5 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B4-5377     TCGA-B4-5832     TCGA-B4-5834     TCGA-B4-5835 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B4-5836     TCGA-B4-5838     TCGA-B4-5843     TCGA-B4-5844 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B8-4146     TCGA-B8-4153     TCGA-B8-4621     TCGA-B8-4622 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B8-5158     TCGA-B8-5159     TCGA-B8-5162     TCGA-B8-5163 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B8-5164     TCGA-B8-5165     TCGA-B8-5545     TCGA-B8-5546 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B8-5549     TCGA-B8-5550     TCGA-B8-5551     TCGA-B8-5552 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B8-5553     TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-7268 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B9-A44B     TCGA-B9-A5W7     TCGA-B9-A5W8     TCGA-B9-A5W9 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-B9-A69E     TCGA-B9-A8YH     TCGA-B9-A8YI     TCGA-BP-4177 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BP-4760     TCGA-BP-4770     TCGA-BP-4782     TCGA-BP-4795 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BP-4801     TCGA-BP-4993     TCGA-BP-5010     TCGA-BP-5168 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BP-5169     TCGA-BP-5170     TCGA-BP-5173     TCGA-BP-5174 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BP-5175     TCGA-BP-5176     TCGA-BP-5177     TCGA-BP-5178 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BP-5180     TCGA-BP-5181     TCGA-BP-5182     TCGA-BP-5183 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BP-5184     TCGA-BP-5185     TCGA-BP-5186     TCGA-BP-5187 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BP-5189     TCGA-BP-5190     TCGA-BP-5191     TCGA-BP-5192 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BP-5194     TCGA-BP-5195     TCGA-BP-5196     TCGA-BP-5198 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BP-5199     TCGA-BP-5200     TCGA-BP-5201     TCGA-BP-5202 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BQ-5875     TCGA-BQ-5876     TCGA-BQ-5877     TCGA-BQ-5878 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881     TCGA-BQ-5882 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5885     TCGA-BQ-5886 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-CJ-4869 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CJ-4882     TCGA-CJ-4897     TCGA-CJ-4901     TCGA-CJ-4902 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CJ-4903     TCGA-CJ-4904     TCGA-CJ-4905     TCGA-CJ-4907 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CJ-4908     TCGA-CJ-4912     TCGA-CJ-4913     TCGA-CJ-4916 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CJ-4918     TCGA-CJ-4920     TCGA-CJ-4923     TCGA-CJ-5671 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CJ-5672     TCGA-CJ-5675     TCGA-CJ-5676     TCGA-CJ-5677 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CJ-5678     TCGA-CJ-5679     TCGA-CJ-5680     TCGA-CJ-5681 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CJ-5682     TCGA-CJ-5683     TCGA-CJ-5684     TCGA-CJ-6027 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CJ-6028     TCGA-CJ-6030     TCGA-CJ-6031     TCGA-CJ-6032 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CJ-6033     TCGA-CW-5580     TCGA-CW-5581     TCGA-CW-5583 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CW-5585     TCGA-CW-5588     TCGA-CW-5589     TCGA-CW-5591 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CW-6087     TCGA-CW-6090     TCGA-CW-6093     TCGA-CW-6097 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CZ-4853     TCGA-CZ-4856     TCGA-CZ-4859     TCGA-CZ-4863 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CZ-4865     TCGA-CZ-4866     TCGA-CZ-5451     TCGA-CZ-5452 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CZ-5453     TCGA-CZ-5454     TCGA-CZ-5455     TCGA-CZ-5456 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CZ-5457     TCGA-CZ-5458     TCGA-CZ-5459     TCGA-CZ-5460 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CZ-5461     TCGA-CZ-5462     TCGA-CZ-5463     TCGA-CZ-5465 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CZ-5466     TCGA-CZ-5467     TCGA-CZ-5468     TCGA-CZ-5469 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CZ-5470     TCGA-CZ-5982     TCGA-CZ-5984     TCGA-CZ-5985 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CZ-5986     TCGA-CZ-5987     TCGA-CZ-5988     TCGA-CZ-5989 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DV-5565     TCGA-DV-5566     TCGA-DV-5568     TCGA-DV-5569 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DV-5574     TCGA-DV-5575     TCGA-DV-5576     TCGA-DW-5560 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7836     TCGA-DW-7837 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DW-7838     TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DW-7842     TCGA-DW-7963     TCGA-DZ-6131     TCGA-DZ-6132 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DZ-6133     TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EU-5904 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-EU-5905     TCGA-EU-5906     TCGA-EU-5907     TCGA-EV-5901 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-EV-5902     TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-F9-A7Q0 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-F9-A7VF     TCGA-F9-A8NY     TCGA-F9-A97G     TCGA-G7-6789 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-G7-6790     TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-G7-6796     TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-G7-A4TM     TCGA-G7-A8LB     TCGA-G7-A8LC     TCGA-G7-A8LD 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-G7-A8LE     TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-GL-8500     TCGA-GL-A4EM     TCGA-GL-A59R     TCGA-GL-A59T 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-GL-A9DC     TCGA-GL-A9DD     TCGA-GL-A9DE     TCGA-HE-7128 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-HE-7129     TCGA-HE-7130     TCGA-HE-A5NF     TCGA-HE-A5NH 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-HE-A5NI     TCGA-HE-A5NJ     TCGA-HE-A5NK     TCGA-HE-A5NL 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-IA-A40U     TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IA-A83S 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-IA-A83T     TCGA-IA-A83V     TCGA-IA-A83W     TCGA-IZ-8195 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-IZ-8196     TCGA-IZ-A6M8     TCGA-IZ-A6M9     TCGA-J7-6720 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-J7-8537     TCGA-J7-A8I2     TCGA-KL-8323     TCGA-KL-8324 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KL-8325     TCGA-KL-8326     TCGA-KL-8327     TCGA-KL-8328 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KL-8329     TCGA-KL-8330     TCGA-KL-8331     TCGA-KL-8332 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KL-8333     TCGA-KL-8334     TCGA-KL-8335     TCGA-KL-8336 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KL-8337     TCGA-KL-8338     TCGA-KL-8339     TCGA-KL-8340 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KL-8341     TCGA-KL-8342     TCGA-KL-8343     TCGA-KL-8344 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KL-8345     TCGA-KL-8346     TCGA-KM-8438     TCGA-KM-8439 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KM-8440     TCGA-KM-8441     TCGA-KM-8442     TCGA-KM-8443 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KM-8476     TCGA-KM-8477     TCGA-KM-8639     TCGA-KN-8418 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KN-8419     TCGA-KN-8421     TCGA-KN-8422     TCGA-KN-8423 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KN-8424     TCGA-KN-8425     TCGA-KN-8426     TCGA-KN-8427 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KN-8428     TCGA-KN-8429     TCGA-KN-8430     TCGA-KN-8431 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KN-8432     TCGA-KN-8433     TCGA-KN-8434     TCGA-KN-8435 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KN-8436     TCGA-KN-8437     TCGA-KO-8403     TCGA-KO-8404 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KO-8405     TCGA-KO-8406     TCGA-KO-8407     TCGA-KO-8408 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KO-8409     TCGA-KO-8410     TCGA-KO-8411     TCGA-KO-8413 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KO-8414     TCGA-KO-8415     TCGA-KO-8416     TCGA-KO-8417 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-KV-A6GD     TCGA-KV-A6GE     TCGA-KV-A74V     TCGA-MH-A55W 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-MH-A55Z     TCGA-MH-A560     TCGA-MH-A561     TCGA-MH-A562 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-MH-A854     TCGA-MH-A855     TCGA-MH-A856     TCGA-MH-A857 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-O9-A75Z     TCGA-P4-A5E6     TCGA-P4-A5E7     TCGA-P4-A5E8 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-P4-A5EA     TCGA-P4-A5EB     TCGA-P4-A5ED     TCGA-P4-AAVL 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-P4-AAVM     TCGA-PJ-A5Z8     TCGA-PJ-A5Z9     TCGA-PJ-A8JU 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-SX-A71R     TCGA-SX-A71S     TCGA-SX-A71U     TCGA-SX-A71V 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-SX-A71W     TCGA-SX-A7SL     TCGA-SX-A7SM     TCGA-SX-A7SN 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-SX-A7SO     TCGA-SX-A7SP     TCGA-SX-A7SQ     TCGA-SX-A7SR 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-SX-A7SS     TCGA-SX-A7SU     TCGA-UN-AAZ9     TCGA-UZ-A9PJ 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-UZ-A9PK     TCGA-UZ-A9PL     TCGA-UZ-A9PM     TCGA-UZ-A9PN 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-UZ-A9PO     TCGA-UZ-A9PP     TCGA-UZ-A9PR     TCGA-UZ-A9PS 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-UZ-A9PU     TCGA-UZ-A9PV     TCGA-UZ-A9PX     TCGA-UZ-A9PZ 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-UZ-A9Q0     TCGA-UZ-A9Q1     TCGA-V9-A7HT     TCGA-WN-A9G9 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-WN-AB4C     TCGA-Y8-A894     TCGA-Y8-A895     TCGA-Y8-A896 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-Y8-A897     TCGA-Y8-A898     TCGA-Y8-A8RY     TCGA-Y8-A8RZ 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-Y8-A8S0     TCGA-Y8-A8S1 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHEB MUTATED        2      0      1      0
  RHEB WILD-TYPE    161    161    169    175
D56V5, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            2            161
  CLUS_2            0            161
  CLUS_3            1            169
  CLUS_4            0            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RHEB MUTATED        0      0      1      0      1      0      1
  RHEB WILD-TYPE    178     62    104    129     51     61     81
D56V6, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0            178
  CLUS_2            0             62
  CLUS_3            1            104
  CLUS_4            0            129
  CLUS_5            1             51
  CLUS_6            0             61
  CLUS_7            1             81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHEB MUTATED        0      1      1      1
  RHEB WILD-TYPE    107    178    232    261
D56V7, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0            107
  CLUS_2            1            178
  CLUS_3            1            232
  CLUS_4            1            261
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RHEB MUTATED        0      0      0      1      1      0      1      0      0
  RHEB WILD-TYPE     84     50    122     76    106     32     89     52    167
D56V8, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             50
  CLUS_3            0            122
  CLUS_4            1             76
  CLUS_5            1            106
  CLUS_6            0             32
  CLUS_7            1             89
  CLUS_8            0             52
  CLUS_9            0            167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHEB MUTATED        0      2      1
  RHEB WILD-TYPE    329    162    281
D56V9, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0            329
  CLUS_2            2            162
  CLUS_3            1            281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHEB MUTATED        0      2      1      0
  RHEB WILD-TYPE     73    298    197    204
D56V10, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0             73
  CLUS_2            2            298
  CLUS_3            1            197
  CLUS_4            0            204
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHEB MUTATED        0      0      1      2
  RHEB WILD-TYPE    155     66     55     94
D56V11, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0            155
  CLUS_2            0             66
  CLUS_3            1             55
  CLUS_4            2             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RHEB MUTATED        0      1      0      0      1      1      0
  RHEB WILD-TYPE     90     72     50     19     36     57     46
D56V12, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0             90
  CLUS_2            1             72
  CLUS_3            0             50
  CLUS_4            0             19
  CLUS_5            1             36
  CLUS_6            1             57
  CLUS_7            0             46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = BRAF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED        0      1      0      1
  BRAF WILD-TYPE     17     15     10     14
D57V1, multiclass
[1] "Remove cluster labels:" "BRAF MUTATED"          
clus
  BRAF MUTATED BRAF WILD-TYPE 
             2             56 
    TCGA-A3-3311     TCGA-A3-3313     TCGA-A3-3317     TCGA-A3-3322 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3374     TCGA-AK-3427 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AK-3456     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3468 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777     TCGA-B2-3923 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104     TCGA-B8-4148 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619     TCGA-B8-4620 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115     TCGA-B9-4116 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-B9-4117     TCGA-B9-4617     TCGA-BP-4161     TCGA-BP-4162 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRAF MUTATED        0      1      1      0      0
  BRAF WILD-TYPE      7     15     15     10      9
D57V2, multiclass
[1] "Remove cluster labels:" "BRAF MUTATED"          
clus
  BRAF MUTATED BRAF WILD-TYPE 
             2             56 
    TCGA-A3-3311     TCGA-A3-3313     TCGA-A3-3317     TCGA-A3-3322 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3374     TCGA-AK-3427 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AK-3456     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3468 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777     TCGA-B2-3923 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099     TCGA-B3-3925 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104     TCGA-B8-4148 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-B8-4151     TCGA-B8-4154     TCGA-B8-4619     TCGA-B8-4620 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115     TCGA-B9-4116 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-B9-4117     TCGA-B9-4617     TCGA-BP-4161     TCGA-BP-4162 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167     TCGA-CJ-4634 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638     TCGA-CJ-4639 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643     TCGA-CJ-4644 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        2      1      2
  BRAF WILD-TYPE    311    167    296
D57V3, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2            311
  CLUS_2            1            167
  CLUS_3            2            296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRAF MUTATED        0      2      0      0      1
  BRAF WILD-TYPE     95    109    142     63    184
D57V4, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            0             95
  CLUS_2            2            109
  CLUS_3            0            142
  CLUS_4            0             63
  CLUS_5            1            184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED        1      1      1      1
  BRAF WILD-TYPE    162    160    169    174
D57V5, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1            162
  CLUS_2            1            160
  CLUS_3            1            169
  CLUS_4            1            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRAF MUTATED        1      1      0      1      0      0      1
  BRAF WILD-TYPE    177     61    105    128     52     61     81
D57V6, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1            177
  CLUS_2            1             61
  CLUS_3            0            105
  CLUS_4            1            128
  CLUS_5            0             52
  CLUS_6            0             61
  CLUS_7            1             81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED        0      1      0      4
  BRAF WILD-TYPE    107    178    233    258
D57V7, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            0            107
  CLUS_2            1            178
  CLUS_3            0            233
  CLUS_4            4            258
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BRAF MUTATED        0      0      0      1      1      1      0      0      2
  BRAF WILD-TYPE     84     50    122     76    106     31     90     52    165
D57V8, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             50
  CLUS_3            0            122
  CLUS_4            1             76
  CLUS_5            1            106
  CLUS_6            1             31
  CLUS_7            0             90
  CLUS_8            0             52
  CLUS_9            2            165
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        3      1      1
  BRAF WILD-TYPE    326    163    281
D57V9, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            3            326
  CLUS_2            1            163
  CLUS_3            1            281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED        0      2      0      3
  BRAF WILD-TYPE     73    298    198    201
D57V10, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            0             73
  CLUS_2            2            298
  CLUS_3            0            198
  CLUS_4            3            201
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED        3      0      0      0
  BRAF WILD-TYPE    152     66     56     96
D57V11, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            3            152
  CLUS_2            0             66
  CLUS_3            0             56
  CLUS_4            0             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRAF MUTATED        2      1      0      0      0      0      0
  BRAF WILD-TYPE     88     72     50     19     37     58     46
D57V12, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2             88
  CLUS_2            1             72
  CLUS_3            0             50
  CLUS_4            0             19
  CLUS_5            0             37
  CLUS_6            0             58
  CLUS_7            0             46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = MLL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED        1      0      1      1
  MLL3 WILD-TYPE     16     16      9     14
D58V1, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            0             16
  CLUS_3            1              9
  CLUS_4            1             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL3 MUTATED        0      0      1      1      1
  MLL3 WILD-TYPE      7     16     15      9      8
D58V2, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            0             16
  CLUS_3            1             15
  CLUS_4            1              9
  CLUS_5            1              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED       23      7     12
  MLL3 WILD-TYPE    290    161    286
D58V3, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           23            290
  CLUS_2            7            161
  CLUS_3           12            286
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL3 MUTATED       10      5      7      3     11
  MLL3 WILD-TYPE     85    106    135     60    174
D58V4, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           10             85
  CLUS_2            5            106
  CLUS_3            7            135
  CLUS_4            3             60
  CLUS_5           11            174
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED       10     14      8      7
  MLL3 WILD-TYPE    153    147    162    168
D58V5, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           10            153
  CLUS_2           14            147
  CLUS_3            8            162
  CLUS_4            7            168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLL3 MUTATED       11      3      7      7      1      4      6
  MLL3 WILD-TYPE    167     59     98    122     51     57     76
D58V6, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            3             59
  CLUS_3            7             98
  CLUS_4            7            122
  CLUS_5            1             51
  CLUS_6            4             57
  CLUS_7            6             76
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED       11      4      9     18
  MLL3 WILD-TYPE     96    175    224    244
D58V7, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           11             96
  CLUS_2            4            175
  CLUS_3            9            224
  CLUS_4           18            244
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MLL3 MUTATED        9      4      5      6      3      0      4      1     10
  MLL3 WILD-TYPE     75     46    117     71    104     32     86     51    157
D58V8, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            9             75
  CLUS_2            4             46
  CLUS_3            5            117
  CLUS_4            6             71
  CLUS_5            3            104
  CLUS_6            0             32
  CLUS_7            4             86
  CLUS_8            1             51
  CLUS_9           10            157
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED       26      6     10
  MLL3 WILD-TYPE    303    158    272
D58V9, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           26            303
  CLUS_2            6            158
  CLUS_3           10            272
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED        9      9     11     13
  MLL3 WILD-TYPE     64    291    187    191
D58V10, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            9             64
  CLUS_2            9            291
  CLUS_3           11            187
  CLUS_4           13            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED       10      7      2      5
  MLL3 WILD-TYPE    145     59     54     91
D58V11, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           10            145
  CLUS_2            7             59
  CLUS_3            2             54
  CLUS_4            5             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLL3 MUTATED        6      5      3      0      0      4      6
  MLL3 WILD-TYPE     84     68     47     19     37     54     40
D58V12, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            6             84
  CLUS_2            5             68
  CLUS_3            3             47
  CLUS_4            0             19
  CLUS_5            0             37
  CLUS_6            4             54
  CLUS_7            6             40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = ANK3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANK3 MUTATED        0      1      0      2
  ANK3 WILD-TYPE     17     15     10     13
D59V1, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1             15
  CLUS_3            0             10
  CLUS_4            2             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANK3 MUTATED        0      1      2      0      0
  ANK3 WILD-TYPE      7     15     14     10      9
D59V2, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1             15
  CLUS_3            2             14
  CLUS_4            0             10
  CLUS_5            0              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ANK3 MUTATED       11      6      5
  ANK3 WILD-TYPE    302    162    293
D59V3, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1           11            302
  CLUS_2            6            162
  CLUS_3            5            293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANK3 MUTATED        4      3      5      0      5
  ANK3 WILD-TYPE     91    108    137     63    180
D59V4, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            3            108
  CLUS_3            5            137
  CLUS_4            0             63
  CLUS_5            5            180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANK3 MUTATED        4      4      7      4
  ANK3 WILD-TYPE    159    157    163    171
D59V5, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            4            159
  CLUS_2            4            157
  CLUS_3            7            163
  CLUS_4            4            171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANK3 MUTATED        2      2      2      5      2      2      4
  ANK3 WILD-TYPE    176     60    103    124     50     59     78
D59V6, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            2            176
  CLUS_2            2             60
  CLUS_3            2            103
  CLUS_4            5            124
  CLUS_5            2             50
  CLUS_6            2             59
  CLUS_7            4             78
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANK3 MUTATED        3      2      7     10
  ANK3 WILD-TYPE    104    177    226    252
D59V7, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            3            104
  CLUS_2            2            177
  CLUS_3            7            226
  CLUS_4           10            252
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ANK3 MUTATED        2      3      5      2      1      1      2      0      6
  ANK3 WILD-TYPE     82     47    117     75    106     31     88     52    161
D59V8, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            3             47
  CLUS_3            5            117
  CLUS_4            2             75
  CLUS_5            1            106
  CLUS_6            1             31
  CLUS_7            2             88
  CLUS_8            0             52
  CLUS_9            6            161
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ANK3 MUTATED       11      4      7
  ANK3 WILD-TYPE    318    160    275
D59V9, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1           11            318
  CLUS_2            4            160
  CLUS_3            7            275
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANK3 MUTATED        1      8      7      6
  ANK3 WILD-TYPE     72    292    191    198
D59V10, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            1             72
  CLUS_2            8            292
  CLUS_3            7            191
  CLUS_4            6            198
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANK3 MUTATED        4      1      2      1
  ANK3 WILD-TYPE    151     65     54     95
D59V11, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            4            151
  CLUS_2            1             65
  CLUS_3            2             54
  CLUS_4            1             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANK3 MUTATED        1      3      2      1      1      0      0
  ANK3 WILD-TYPE     89     70     48     18     36     58     46
D59V12, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            3             70
  CLUS_3            2             48
  CLUS_4            1             18
  CLUS_5            1             36
  CLUS_6            0             58
  CLUS_7            0             46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = EMG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        0      0      3      0
  EMG1 WILD-TYPE     17     16      7     15
D60V1, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            0             16
  CLUS_3            3              7
  CLUS_4            0             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        0      0      0      0      3
  EMG1 WILD-TYPE      7     16     16     10      6
D60V2, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            0             16
  CLUS_3            0             16
  CLUS_4            0             10
  CLUS_5            3              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        3      1      0
  EMG1 WILD-TYPE    310    167    298
D60V3, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            3            310
  CLUS_2            1            167
  CLUS_3            0            298
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        1      0      1      0      0
  EMG1 WILD-TYPE     94    111    141     63    185
D60V4, multiclass
[1] "Remove cluster labels:" "EMG1 MUTATED"          
clus
  EMG1 MUTATED EMG1 WILD-TYPE 
             2            594 
    TCGA-2K-A9WE     TCGA-2Z-A9J1     TCGA-2Z-A9J2     TCGA-2Z-A9J3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9J5     TCGA-2Z-A9J6     TCGA-2Z-A9J7     TCGA-2Z-A9J8 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9JD     TCGA-2Z-A9JE     TCGA-2Z-A9JG     TCGA-2Z-A9JI 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9JJ     TCGA-2Z-A9JK     TCGA-2Z-A9JL     TCGA-2Z-A9JM 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9JN     TCGA-2Z-A9JO     TCGA-2Z-A9JP     TCGA-2Z-A9JQ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9JR     TCGA-2Z-A9JS     TCGA-2Z-A9JT     TCGA-4A-A93W 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-4A-A93X     TCGA-4A-A93Y     TCGA-5P-A9JU     TCGA-5P-A9JV 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-5P-A9JW     TCGA-5P-A9JY     TCGA-5P-A9JZ     TCGA-5P-A9K0 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-5P-A9K2     TCGA-5P-A9K3     TCGA-5P-A9K6     TCGA-5P-A9K8 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-5P-A9KA     TCGA-5P-A9KC     TCGA-5P-A9KE     TCGA-5P-A9KH 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A3-3357     TCGA-A3-3358     TCGA-A3-3367     TCGA-A3-3370 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A3-3373     TCGA-A3-3376     TCGA-A3-3385     TCGA-A3-3387 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-7286     TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7583 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-7584     TCGA-A4-7585     TCGA-A4-7732     TCGA-A4-7734 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-7828     TCGA-A4-7915     TCGA-A4-7996     TCGA-A4-7997 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-8098     TCGA-A4-8310     TCGA-A4-8311     TCGA-A4-8312 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-8515     TCGA-A4-8517     TCGA-A4-8518     TCGA-A4-8630 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-A48D     TCGA-A4-A4ZT     TCGA-A4-A57E     TCGA-A4-A5DU 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-A5XZ     TCGA-A4-A5Y0     TCGA-A4-A5Y1     TCGA-A4-A6HP 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-A772     TCGA-A4-A7UZ     TCGA-AK-3425     TCGA-AK-3428 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-AK-3431     TCGA-AK-3434     TCGA-AK-3445     TCGA-AK-3450 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-AK-3453     TCGA-AK-3454     TCGA-AK-3458     TCGA-AK-3460 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-AK-3461     TCGA-AL-7173     TCGA-AL-A5DJ     TCGA-AT-A5NU 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4690     TCGA-B0-4691     TCGA-B0-4693     TCGA-B0-4694 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4697     TCGA-B0-4700     TCGA-B0-4703     TCGA-B0-4706 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4707     TCGA-B0-4710     TCGA-B0-4712     TCGA-B0-4713 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4714     TCGA-B0-4718     TCGA-B0-4810     TCGA-B0-4811 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4813     TCGA-B0-4814     TCGA-B0-4815     TCGA-B0-4816 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4817     TCGA-B0-4818     TCGA-B0-4819     TCGA-B0-4822 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4823     TCGA-B0-4824     TCGA-B0-4827     TCGA-B0-4828 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4841     TCGA-B0-4842     TCGA-B0-4843     TCGA-B0-4844 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4845     TCGA-B0-4846     TCGA-B0-4847     TCGA-B0-4848 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4849     TCGA-B0-4852     TCGA-B0-4945     TCGA-B0-5080 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5083     TCGA-B0-5092     TCGA-B0-5094     TCGA-B0-5095 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5096     TCGA-B0-5097     TCGA-B0-5098     TCGA-B0-5099 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5100     TCGA-B0-5102     TCGA-B0-5104     TCGA-B0-5106 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5107     TCGA-B0-5108     TCGA-B0-5109     TCGA-B0-5110 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5113     TCGA-B0-5115     TCGA-B0-5116     TCGA-B0-5117 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5119     TCGA-B0-5120     TCGA-B0-5121     TCGA-B0-5399 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5400     TCGA-B0-5402     TCGA-B0-5691     TCGA-B0-5692 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5693     TCGA-B0-5694     TCGA-B0-5695     TCGA-B0-5696 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5697     TCGA-B0-5698     TCGA-B0-5699     TCGA-B0-5701 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5702     TCGA-B0-5703     TCGA-B0-5705     TCGA-B0-5706 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5707     TCGA-B0-5709     TCGA-B0-5710     TCGA-B0-5711 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5712     TCGA-B0-5713     TCGA-B0-5812     TCGA-B1-5398 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B1-7332     TCGA-B1-A47M     TCGA-B1-A47N     TCGA-B1-A47O 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B1-A654     TCGA-B1-A655     TCGA-B1-A656     TCGA-B1-A657 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B2-3924     TCGA-B2-4101     TCGA-B2-5633     TCGA-B2-5635 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B2-5641     TCGA-B3-8121     TCGA-B3-A6W5     TCGA-B4-5377 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B4-5832     TCGA-B4-5834     TCGA-B4-5835     TCGA-B4-5836 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B4-5838     TCGA-B4-5843     TCGA-B4-5844     TCGA-B8-4146 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-4153     TCGA-B8-4621     TCGA-B8-4622     TCGA-B8-5158 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-5159     TCGA-B8-5162     TCGA-B8-5163     TCGA-B8-5164 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-5165     TCGA-B8-5545     TCGA-B8-5546     TCGA-B8-5549 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-5550     TCGA-B8-5551     TCGA-B8-5552     TCGA-B8-5553 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-7268     TCGA-B9-A44B 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B9-A5W7     TCGA-B9-A5W8     TCGA-B9-A5W9     TCGA-B9-A69E 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B9-A8YH     TCGA-B9-A8YI     TCGA-BP-4177     TCGA-BP-4760 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4770     TCGA-BP-4782     TCGA-BP-4795     TCGA-BP-4801 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4993     TCGA-BP-5010     TCGA-BP-5168     TCGA-BP-5169 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5170     TCGA-BP-5173     TCGA-BP-5174     TCGA-BP-5175 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5176     TCGA-BP-5177     TCGA-BP-5178     TCGA-BP-5180 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5181     TCGA-BP-5182     TCGA-BP-5183     TCGA-BP-5184 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5185     TCGA-BP-5187     TCGA-BP-5189     TCGA-BP-5190 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5191     TCGA-BP-5192     TCGA-BP-5194     TCGA-BP-5195 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5196     TCGA-BP-5198     TCGA-BP-5199     TCGA-BP-5200 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5201     TCGA-BP-5202     TCGA-BQ-5875     TCGA-BQ-5876 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5877     TCGA-BQ-5878     TCGA-BQ-5879     TCGA-BQ-5880 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5881     TCGA-BQ-5882     TCGA-BQ-5883     TCGA-BQ-5884 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5885     TCGA-BQ-5886     TCGA-BQ-5887     TCGA-BQ-5888 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5889     TCGA-BQ-5890     TCGA-BQ-5891     TCGA-BQ-5892 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5893     TCGA-BQ-5894     TCGA-BQ-7044     TCGA-BQ-7045 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7046     TCGA-BQ-7048     TCGA-BQ-7049     TCGA-BQ-7050 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7051     TCGA-BQ-7053     TCGA-BQ-7055     TCGA-BQ-7056 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7058     TCGA-BQ-7059     TCGA-BQ-7060     TCGA-BQ-7061 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7062     TCGA-CJ-4869     TCGA-CJ-4882     TCGA-CJ-4897 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4901     TCGA-CJ-4902     TCGA-CJ-4903     TCGA-CJ-4904 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4905     TCGA-CJ-4907     TCGA-CJ-4908     TCGA-CJ-4912 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4913     TCGA-CJ-4916     TCGA-CJ-4918     TCGA-CJ-4920 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4923     TCGA-CJ-5671     TCGA-CJ-5672     TCGA-CJ-5675 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-5676     TCGA-CJ-5677     TCGA-CJ-5678     TCGA-CJ-5679 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-5680     TCGA-CJ-5681     TCGA-CJ-5682     TCGA-CJ-5683 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-5684     TCGA-CJ-5686     TCGA-CJ-6027     TCGA-CJ-6028 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-6030     TCGA-CJ-6031     TCGA-CJ-6032     TCGA-CJ-6033 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CW-5580     TCGA-CW-5581     TCGA-CW-5583     TCGA-CW-5585 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CW-5588     TCGA-CW-5589     TCGA-CW-5591     TCGA-CW-6087 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CW-6090     TCGA-CW-6093     TCGA-CW-6097     TCGA-CZ-4853 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-4856     TCGA-CZ-4859     TCGA-CZ-4863     TCGA-CZ-4865 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-4866     TCGA-CZ-5451     TCGA-CZ-5452     TCGA-CZ-5453 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5454     TCGA-CZ-5455     TCGA-CZ-5456     TCGA-CZ-5457 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5458     TCGA-CZ-5459     TCGA-CZ-5460     TCGA-CZ-5461 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5462     TCGA-CZ-5463     TCGA-CZ-5465     TCGA-CZ-5466 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5467     TCGA-CZ-5468     TCGA-CZ-5469     TCGA-CZ-5470 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5982     TCGA-CZ-5984     TCGA-CZ-5985     TCGA-CZ-5986 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5987     TCGA-CZ-5988     TCGA-CZ-5989     TCGA-DV-5565 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DV-5566     TCGA-DV-5568     TCGA-DV-5569     TCGA-DV-5574 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DV-5575     TCGA-DV-5576     TCGA-DW-5560     TCGA-DW-5561 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DW-7834     TCGA-DW-7836     TCGA-DW-7837     TCGA-DW-7838 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841     TCGA-DW-7842 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DW-7963     TCGA-DZ-6131     TCGA-DZ-6132     TCGA-DZ-6133 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EU-5904     TCGA-EU-5905 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EU-5906     TCGA-EU-5907     TCGA-EV-5901     TCGA-EV-5902 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-F9-A7Q0     TCGA-F9-A7VF 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-F9-A8NY     TCGA-F9-A97G     TCGA-G7-6789     TCGA-G7-6790 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795     TCGA-G7-6796 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-A8LB     TCGA-G7-A8LC     TCGA-G7-A8LD     TCGA-G7-A8LE 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-GL-A4EM     TCGA-GL-A59R     TCGA-GL-A59T     TCGA-GL-A9DC 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-GL-A9DD     TCGA-GL-A9DE     TCGA-HE-7128     TCGA-HE-7129 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HE-7130     TCGA-HE-A5NF     TCGA-HE-A5NH     TCGA-HE-A5NI 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HE-A5NJ     TCGA-HE-A5NK     TCGA-HE-A5NL     TCGA-IA-A40U 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IA-A83S     TCGA-IA-A83T 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IA-A83V     TCGA-IA-A83W     TCGA-IZ-8195     TCGA-IZ-8196 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IZ-A6M8     TCGA-IZ-A6M9     TCGA-J7-6720     TCGA-J7-8537 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J7-A8I2     TCGA-KL-8323     TCGA-KL-8324     TCGA-KL-8325 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8326     TCGA-KL-8327     TCGA-KL-8328     TCGA-KL-8329 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8330     TCGA-KL-8331     TCGA-KL-8332     TCGA-KL-8333 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8334     TCGA-KL-8335     TCGA-KL-8336     TCGA-KL-8337 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8338     TCGA-KL-8339     TCGA-KL-8340     TCGA-KL-8341 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8342     TCGA-KL-8343     TCGA-KL-8344     TCGA-KL-8345 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8346     TCGA-KM-8438     TCGA-KM-8439     TCGA-KM-8440 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KM-8441     TCGA-KM-8442     TCGA-KM-8443     TCGA-KM-8476 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KM-8477     TCGA-KM-8639     TCGA-KN-8418     TCGA-KN-8419 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8421     TCGA-KN-8422     TCGA-KN-8423     TCGA-KN-8424 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8425     TCGA-KN-8426     TCGA-KN-8427     TCGA-KN-8428 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8429     TCGA-KN-8430     TCGA-KN-8431     TCGA-KN-8432 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8433     TCGA-KN-8434     TCGA-KN-8435     TCGA-KN-8436 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8437     TCGA-KO-8403     TCGA-KO-8404     TCGA-KO-8405 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8406     TCGA-KO-8407     TCGA-KO-8408     TCGA-KO-8409 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8410     TCGA-KO-8411     TCGA-KO-8413     TCGA-KO-8414 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8415     TCGA-KO-8416     TCGA-KO-8417     TCGA-KV-A6GD 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-KV-A74V     TCGA-MH-A55W     TCGA-MH-A55Z 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-MH-A560     TCGA-MH-A561     TCGA-MH-A562     TCGA-MH-A854 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-MH-A855     TCGA-MH-A856     TCGA-MH-A857     TCGA-O9-A75Z 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P4-A5E6     TCGA-P4-A5E7     TCGA-P4-A5E8     TCGA-P4-A5EA 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P4-A5EB     TCGA-P4-A5ED     TCGA-P4-AAVL     TCGA-P4-AAVM 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-PJ-A5Z8     TCGA-PJ-A5Z9     TCGA-PJ-A8JU     TCGA-Q2-A5QZ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A71R     TCGA-SX-A71S     TCGA-SX-A71U     TCGA-SX-A71V 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A71W     TCGA-SX-A7SL     TCGA-SX-A7SM     TCGA-SX-A7SN 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A7SO     TCGA-SX-A7SP     TCGA-SX-A7SQ     TCGA-SX-A7SR 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A7SS     TCGA-SX-A7SU     TCGA-UN-AAZ9     TCGA-UZ-A9PJ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PK     TCGA-UZ-A9PL     TCGA-UZ-A9PM     TCGA-UZ-A9PN 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PO     TCGA-UZ-A9PP     TCGA-UZ-A9PR     TCGA-UZ-A9PS 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PU     TCGA-UZ-A9PV     TCGA-UZ-A9PX     TCGA-UZ-A9PZ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9Q0     TCGA-UZ-A9Q1     TCGA-V9-A7HT     TCGA-WN-A9G9 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-WN-AB4C     TCGA-Y8-A894     TCGA-Y8-A895     TCGA-Y8-A896 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-Y8-A897     TCGA-Y8-A898     TCGA-Y8-A8RY     TCGA-Y8-A8RZ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-Y8-A8S0     TCGA-Y8-A8S1 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        0      0      2      0
  EMG1 WILD-TYPE    163    161    168    175
D60V5, multiclass
[1] "Remove cluster labels:" "EMG1 MUTATED"          
clus
  EMG1 MUTATED EMG1 WILD-TYPE 
             2            667 
    TCGA-2K-A9WE     TCGA-2Z-A9J1     TCGA-2Z-A9J3     TCGA-2Z-A9J5 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9J6     TCGA-2Z-A9J7     TCGA-2Z-A9J8     TCGA-2Z-A9JD 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9JE     TCGA-2Z-A9JI     TCGA-2Z-A9JJ     TCGA-2Z-A9JL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9JO     TCGA-2Z-A9JP     TCGA-2Z-A9JQ     TCGA-2Z-A9JT 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-4A-A93W     TCGA-4A-A93X     TCGA-4A-A93Y     TCGA-5P-A9JU 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-5P-A9JY     TCGA-5P-A9KE     TCGA-A3-3311     TCGA-A3-3313 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A3-3317     TCGA-A3-3322     TCGA-A3-3323     TCGA-A3-3326 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A3-3331     TCGA-A3-3347     TCGA-A3-3349     TCGA-A3-3357 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A3-3362     TCGA-A3-3367     TCGA-A3-3370     TCGA-A3-3373 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A3-3374     TCGA-A3-3376     TCGA-A3-3385     TCGA-A3-3387 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-7288     TCGA-A4-7583     TCGA-A4-7584     TCGA-A4-7585 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-7734     TCGA-A4-7915     TCGA-A4-7996     TCGA-A4-7997 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-8098     TCGA-A4-8311     TCGA-A4-8517     TCGA-A4-8630 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-A57E     TCGA-AK-3428     TCGA-AK-3434     TCGA-AK-3436 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-AK-3451     TCGA-AK-3456     TCGA-AL-3472     TCGA-AL-3473 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-AL-7173     TCGA-AL-A5DJ     TCGA-B0-4690     TCGA-B0-4691 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4693     TCGA-B0-4694     TCGA-B0-4697     TCGA-B0-4700 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4703     TCGA-B0-4706     TCGA-B0-4707     TCGA-B0-4710 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4712     TCGA-B0-4713     TCGA-B0-4714     TCGA-B0-4718 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4810     TCGA-B0-4811     TCGA-B0-4813     TCGA-B0-4814 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4815     TCGA-B0-4816     TCGA-B0-4817     TCGA-B0-4818 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4819     TCGA-B0-4822     TCGA-B0-4823     TCGA-B0-4824 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4827     TCGA-B0-4828     TCGA-B0-4833     TCGA-B0-4836 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4837     TCGA-B0-4838     TCGA-B0-4839     TCGA-B0-4841 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4842     TCGA-B0-4843     TCGA-B0-4844     TCGA-B0-4845 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4846     TCGA-B0-4847     TCGA-B0-4848     TCGA-B0-4849 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4852     TCGA-B0-4945     TCGA-B0-5075     TCGA-B0-5077 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5080     TCGA-B0-5081     TCGA-B0-5084     TCGA-B0-5085 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5088     TCGA-B0-5092     TCGA-B0-5094     TCGA-B0-5095 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5096     TCGA-B0-5097     TCGA-B0-5098     TCGA-B0-5099 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5100     TCGA-B0-5102     TCGA-B0-5104     TCGA-B0-5106 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5107     TCGA-B0-5108     TCGA-B0-5109     TCGA-B0-5110 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5113     TCGA-B0-5115     TCGA-B0-5116     TCGA-B0-5117 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5119     TCGA-B0-5120     TCGA-B0-5121     TCGA-B0-5399 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5400     TCGA-B0-5402     TCGA-B0-5691     TCGA-B0-5692 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5693     TCGA-B0-5694     TCGA-B0-5695     TCGA-B0-5696 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5697     TCGA-B0-5698     TCGA-B0-5699     TCGA-B0-5701 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5702     TCGA-B0-5703     TCGA-B0-5705     TCGA-B0-5706 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5707     TCGA-B0-5709     TCGA-B0-5710     TCGA-B0-5711 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5712     TCGA-B0-5713     TCGA-B0-5812     TCGA-B1-5398 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B1-7332     TCGA-B1-A47M     TCGA-B1-A47N     TCGA-B1-A47O 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B1-A654     TCGA-B1-A657     TCGA-B2-3923     TCGA-B2-3924 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B2-4098     TCGA-B2-4099     TCGA-B2-4101     TCGA-B2-5633 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B2-5635     TCGA-B2-5641     TCGA-B3-8121     TCGA-B3-A6W5 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B4-5377     TCGA-B4-5832     TCGA-B4-5834     TCGA-B4-5835 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B4-5836     TCGA-B4-5838     TCGA-B4-5843     TCGA-B4-5844 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-4143     TCGA-B8-4146     TCGA-B8-4153     TCGA-B8-4620 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-4621     TCGA-B8-4622     TCGA-B8-5158     TCGA-B8-5159 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-5162     TCGA-B8-5163     TCGA-B8-5164     TCGA-B8-5165 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-5545     TCGA-B8-5546     TCGA-B8-5549     TCGA-B8-5550 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-5551     TCGA-B8-5552     TCGA-B8-5553     TCGA-B9-5155 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B9-5156     TCGA-B9-7268     TCGA-B9-A44B     TCGA-B9-A5W7 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B9-A5W8     TCGA-B9-A5W9     TCGA-B9-A69E     TCGA-B9-A8YH 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B9-A8YI     TCGA-BP-4158     TCGA-BP-4161     TCGA-BP-4164 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4165     TCGA-BP-4169     TCGA-BP-4170     TCGA-BP-4173 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4174     TCGA-BP-4326     TCGA-BP-4329     TCGA-BP-4330 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4331     TCGA-BP-4337     TCGA-BP-4338     TCGA-BP-4341 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4342     TCGA-BP-4343     TCGA-BP-4345     TCGA-BP-4346 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4347     TCGA-BP-4349     TCGA-BP-4351     TCGA-BP-4352 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4354     TCGA-BP-4355     TCGA-BP-4756     TCGA-BP-4758 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4759     TCGA-BP-4760     TCGA-BP-4761     TCGA-BP-4762 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4763     TCGA-BP-4765     TCGA-BP-4766     TCGA-BP-4768 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4770     TCGA-BP-4771     TCGA-BP-4774     TCGA-BP-4775 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4777     TCGA-BP-4781     TCGA-BP-4787     TCGA-BP-4789 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4790     TCGA-BP-4797     TCGA-BP-4798     TCGA-BP-4799 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4801     TCGA-BP-4803     TCGA-BP-4804     TCGA-BP-4807 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4960     TCGA-BP-4961     TCGA-BP-4962     TCGA-BP-4963 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4964     TCGA-BP-4965     TCGA-BP-4967     TCGA-BP-4968 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4970     TCGA-BP-4971     TCGA-BP-4972     TCGA-BP-4973 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4974     TCGA-BP-4975     TCGA-BP-4976     TCGA-BP-4977 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4981     TCGA-BP-4982     TCGA-BP-4983     TCGA-BP-4985 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4986     TCGA-BP-4987     TCGA-BP-4988     TCGA-BP-4989 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4991     TCGA-BP-4992     TCGA-BP-4993     TCGA-BP-4994 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4995     TCGA-BP-4998     TCGA-BP-4999     TCGA-BP-5000 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5001     TCGA-BP-5004     TCGA-BP-5006     TCGA-BP-5007 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5008     TCGA-BP-5009     TCGA-BP-5010     TCGA-BP-5168 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5169     TCGA-BP-5170     TCGA-BP-5173     TCGA-BP-5174 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5175     TCGA-BP-5176     TCGA-BP-5177     TCGA-BP-5178 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5180     TCGA-BP-5181     TCGA-BP-5182     TCGA-BP-5183 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5184     TCGA-BP-5185     TCGA-BP-5187     TCGA-BP-5189 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5190     TCGA-BP-5191     TCGA-BP-5192     TCGA-BP-5194 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5195     TCGA-BP-5196     TCGA-BP-5198     TCGA-BP-5199 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5200     TCGA-BP-5201     TCGA-BP-5202     TCGA-BQ-5875 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5877     TCGA-BQ-5878     TCGA-BQ-5879     TCGA-BQ-5880 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5881     TCGA-BQ-5882     TCGA-BQ-5883     TCGA-BQ-5885 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7046     TCGA-BQ-7048     TCGA-BQ-7049 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053     TCGA-BQ-7055 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059     TCGA-BQ-7060 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7061     TCGA-BQ-7062     TCGA-CJ-4634     TCGA-CJ-4635 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4638     TCGA-CJ-4640     TCGA-CJ-4868     TCGA-CJ-4869 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4870     TCGA-CJ-4871     TCGA-CJ-4872     TCGA-CJ-4873 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4874     TCGA-CJ-4875     TCGA-CJ-4876     TCGA-CJ-4878 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4881     TCGA-CJ-4882     TCGA-CJ-4884     TCGA-CJ-4885 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4886     TCGA-CJ-4887     TCGA-CJ-4888     TCGA-CJ-4889 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4890     TCGA-CJ-4891     TCGA-CJ-4892     TCGA-CJ-4893 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4894     TCGA-CJ-4895     TCGA-CJ-4897     TCGA-CJ-4899 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4900     TCGA-CJ-4901     TCGA-CJ-4902     TCGA-CJ-4903 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4904     TCGA-CJ-4905     TCGA-CJ-4907     TCGA-CJ-4908 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4912     TCGA-CJ-4913     TCGA-CJ-4916     TCGA-CJ-4918 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4920     TCGA-CJ-4923     TCGA-CJ-5671     TCGA-CJ-5672 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-5675     TCGA-CJ-5676     TCGA-CJ-5677     TCGA-CJ-5678 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-5679     TCGA-CJ-5680     TCGA-CJ-5681     TCGA-CJ-5682 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-5683     TCGA-CJ-5684     TCGA-CJ-5686     TCGA-CJ-6027 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-6028     TCGA-CJ-6030     TCGA-CJ-6031     TCGA-CJ-6032 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-6033     TCGA-CW-5580     TCGA-CW-5581     TCGA-CW-5583 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CW-5585     TCGA-CW-5588     TCGA-CW-5589     TCGA-CW-5591 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CW-6087     TCGA-CW-6090     TCGA-CW-6093     TCGA-CW-6097 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-4853     TCGA-CZ-4854     TCGA-CZ-4856     TCGA-CZ-4857 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-4858     TCGA-CZ-4859     TCGA-CZ-4861     TCGA-CZ-4862 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-4863     TCGA-CZ-4865     TCGA-CZ-4866     TCGA-CZ-5451 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5452     TCGA-CZ-5453     TCGA-CZ-5454     TCGA-CZ-5455 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5456     TCGA-CZ-5457     TCGA-CZ-5458     TCGA-CZ-5459 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5460     TCGA-CZ-5461     TCGA-CZ-5462     TCGA-CZ-5463 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5465     TCGA-CZ-5466     TCGA-CZ-5467     TCGA-CZ-5468 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5469     TCGA-CZ-5470     TCGA-CZ-5982     TCGA-CZ-5984 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5985     TCGA-CZ-5986     TCGA-CZ-5987     TCGA-CZ-5988 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5989     TCGA-DV-5565     TCGA-DV-5566     TCGA-DV-5568 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DV-5569     TCGA-DV-5574     TCGA-DV-5575     TCGA-DV-5576 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DW-5560     TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DW-7838     TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DW-7842     TCGA-DW-7963     TCGA-DZ-6131     TCGA-DZ-6132 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DZ-6133     TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EU-5904 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EU-5905     TCGA-EU-5906     TCGA-EU-5907     TCGA-EV-5901 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EV-5902     TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-F9-A7Q0 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-F9-A7VF     TCGA-F9-A8NY     TCGA-F9-A97G     TCGA-G7-6789 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-6790     TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-6796     TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-A4TM     TCGA-G7-A8LB     TCGA-G7-A8LC     TCGA-G7-A8LD 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-A8LE     TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-GL-8500     TCGA-GL-A4EM     TCGA-GL-A59R     TCGA-GL-A9DC 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-GL-A9DD     TCGA-GL-A9DE     TCGA-HE-7128     TCGA-HE-7129 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HE-7130     TCGA-HE-A5NF     TCGA-HE-A5NH     TCGA-HE-A5NI 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HE-A5NJ     TCGA-HE-A5NK     TCGA-HE-A5NL     TCGA-IA-A40U 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IA-A83V     TCGA-IA-A83W 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IZ-8195     TCGA-IZ-8196     TCGA-IZ-A6M8     TCGA-J7-6720 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J7-8537     TCGA-J7-A8I2     TCGA-KL-8324     TCGA-KL-8325 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8326     TCGA-KL-8327     TCGA-KL-8328     TCGA-KL-8329 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8330     TCGA-KL-8331     TCGA-KL-8332     TCGA-KL-8333 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8334     TCGA-KL-8335     TCGA-KL-8336     TCGA-KL-8337 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8338     TCGA-KL-8339     TCGA-KL-8340     TCGA-KL-8341 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8342     TCGA-KL-8343     TCGA-KL-8344     TCGA-KL-8345 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8346     TCGA-KM-8438     TCGA-KM-8439     TCGA-KM-8440 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KM-8441     TCGA-KM-8442     TCGA-KM-8443     TCGA-KM-8476 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KM-8639     TCGA-KN-8418     TCGA-KN-8419     TCGA-KN-8421 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8423     TCGA-KN-8424     TCGA-KN-8425     TCGA-KN-8426 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8427     TCGA-KN-8428     TCGA-KN-8429     TCGA-KN-8430 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8431     TCGA-KN-8432     TCGA-KN-8433     TCGA-KN-8434 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8435     TCGA-KN-8436     TCGA-KN-8437     TCGA-KO-8403 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8404     TCGA-KO-8405     TCGA-KO-8406     TCGA-KO-8407 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8408     TCGA-KO-8409     TCGA-KO-8410     TCGA-KO-8411 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8413     TCGA-KO-8414     TCGA-KO-8415     TCGA-KO-8416 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8417     TCGA-KV-A6GD     TCGA-KV-A6GE     TCGA-KV-A74V 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-MH-A55Z     TCGA-MH-A560     TCGA-MH-A562     TCGA-MH-A855 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P4-A5E6     TCGA-P4-A5E7     TCGA-P4-A5E8     TCGA-P4-A5EA 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P4-A5EB     TCGA-P4-A5ED     TCGA-P4-AAVL     TCGA-P4-AAVM 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-PJ-A5Z8     TCGA-PJ-A5Z9     TCGA-PJ-A8JU     TCGA-Q2-A5QZ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A71R     TCGA-SX-A71U     TCGA-SX-A7SM     TCGA-SX-A7SN 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A7SO     TCGA-SX-A7SP     TCGA-SX-A7SQ     TCGA-SX-A7SR 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A7SS     TCGA-UN-AAZ9     TCGA-UZ-A9PJ     TCGA-UZ-A9PK 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PL     TCGA-UZ-A9PM     TCGA-UZ-A9PN     TCGA-UZ-A9PO 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PP     TCGA-UZ-A9PR     TCGA-UZ-A9PS     TCGA-UZ-A9PU 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PV     TCGA-UZ-A9PX     TCGA-UZ-A9PZ     TCGA-UZ-A9Q0 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9Q1     TCGA-V9-A7HT     TCGA-WN-A9G9     TCGA-Y8-A894 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-Y8-A895     TCGA-Y8-A896     TCGA-Y8-A897     TCGA-Y8-A8RY 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-Y8-A8RZ     TCGA-Y8-A8S0     TCGA-Y8-A8S1 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EMG1 MUTATED        0      0      1      1      0      0      0
  EMG1 WILD-TYPE    178     62    104    128     52     61     82
D60V6, multiclass
[1] "Remove cluster labels:" "EMG1 MUTATED"          
clus
  EMG1 MUTATED EMG1 WILD-TYPE 
             2            667 
    TCGA-2K-A9WE     TCGA-2Z-A9J1     TCGA-2Z-A9J3     TCGA-2Z-A9J5 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9J6     TCGA-2Z-A9J7     TCGA-2Z-A9J8     TCGA-2Z-A9JD 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9JE     TCGA-2Z-A9JI     TCGA-2Z-A9JJ     TCGA-2Z-A9JL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9JO     TCGA-2Z-A9JP     TCGA-2Z-A9JQ     TCGA-2Z-A9JT 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-4A-A93W     TCGA-4A-A93X     TCGA-4A-A93Y     TCGA-5P-A9JU 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-5P-A9JY     TCGA-5P-A9KE     TCGA-A3-3311     TCGA-A3-3313 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A3-3317     TCGA-A3-3322     TCGA-A3-3323     TCGA-A3-3326 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A3-3331     TCGA-A3-3347     TCGA-A3-3349     TCGA-A3-3357 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A3-3362     TCGA-A3-3367     TCGA-A3-3370     TCGA-A3-3373 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A3-3374     TCGA-A3-3376     TCGA-A3-3385     TCGA-A3-3387 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-7288     TCGA-A4-7583     TCGA-A4-7584     TCGA-A4-7585 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-7734     TCGA-A4-7915     TCGA-A4-7996     TCGA-A4-7997 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-8098     TCGA-A4-8311     TCGA-A4-8517     TCGA-A4-8630 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-A57E     TCGA-AK-3428     TCGA-AK-3434     TCGA-AK-3436 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-AK-3451     TCGA-AK-3456     TCGA-AL-3472     TCGA-AL-3473 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-AL-7173     TCGA-AL-A5DJ     TCGA-B0-4690     TCGA-B0-4691 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4693     TCGA-B0-4694     TCGA-B0-4697     TCGA-B0-4700 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4703     TCGA-B0-4706     TCGA-B0-4707     TCGA-B0-4710 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4712     TCGA-B0-4713     TCGA-B0-4714     TCGA-B0-4718 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4810     TCGA-B0-4811     TCGA-B0-4813     TCGA-B0-4814 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4815     TCGA-B0-4816     TCGA-B0-4817     TCGA-B0-4818 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4819     TCGA-B0-4822     TCGA-B0-4823     TCGA-B0-4824 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4827     TCGA-B0-4828     TCGA-B0-4833     TCGA-B0-4836 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4837     TCGA-B0-4838     TCGA-B0-4839     TCGA-B0-4841 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4842     TCGA-B0-4843     TCGA-B0-4844     TCGA-B0-4845 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4846     TCGA-B0-4847     TCGA-B0-4848     TCGA-B0-4849 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4852     TCGA-B0-4945     TCGA-B0-5075     TCGA-B0-5077 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5080     TCGA-B0-5081     TCGA-B0-5084     TCGA-B0-5085 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5088     TCGA-B0-5092     TCGA-B0-5094     TCGA-B0-5095 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5096     TCGA-B0-5097     TCGA-B0-5098     TCGA-B0-5099 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5100     TCGA-B0-5102     TCGA-B0-5104     TCGA-B0-5106 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5107     TCGA-B0-5108     TCGA-B0-5109     TCGA-B0-5110 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5113     TCGA-B0-5115     TCGA-B0-5116     TCGA-B0-5117 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5119     TCGA-B0-5120     TCGA-B0-5121     TCGA-B0-5399 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5400     TCGA-B0-5402     TCGA-B0-5691     TCGA-B0-5692 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5693     TCGA-B0-5694     TCGA-B0-5695     TCGA-B0-5696 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5697     TCGA-B0-5698     TCGA-B0-5699     TCGA-B0-5701 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5702     TCGA-B0-5703     TCGA-B0-5705     TCGA-B0-5706 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5707     TCGA-B0-5709     TCGA-B0-5710     TCGA-B0-5711 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5712     TCGA-B0-5713     TCGA-B0-5812     TCGA-B1-5398 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B1-7332     TCGA-B1-A47M     TCGA-B1-A47N     TCGA-B1-A47O 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B1-A654     TCGA-B1-A657     TCGA-B2-3923     TCGA-B2-3924 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B2-4098     TCGA-B2-4099     TCGA-B2-4101     TCGA-B2-5633 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B2-5635     TCGA-B2-5641     TCGA-B3-8121     TCGA-B3-A6W5 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B4-5377     TCGA-B4-5832     TCGA-B4-5834     TCGA-B4-5835 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B4-5836     TCGA-B4-5838     TCGA-B4-5843     TCGA-B4-5844 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-4143     TCGA-B8-4146     TCGA-B8-4153     TCGA-B8-4620 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-4621     TCGA-B8-4622     TCGA-B8-5158     TCGA-B8-5159 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-5162     TCGA-B8-5163     TCGA-B8-5164     TCGA-B8-5165 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-5545     TCGA-B8-5546     TCGA-B8-5549     TCGA-B8-5550 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-5551     TCGA-B8-5552     TCGA-B8-5553     TCGA-B9-5155 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B9-5156     TCGA-B9-7268     TCGA-B9-A44B     TCGA-B9-A5W7 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B9-A5W8     TCGA-B9-A5W9     TCGA-B9-A69E     TCGA-B9-A8YH 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B9-A8YI     TCGA-BP-4158     TCGA-BP-4161     TCGA-BP-4164 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4165     TCGA-BP-4169     TCGA-BP-4170     TCGA-BP-4173 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4174     TCGA-BP-4326     TCGA-BP-4329     TCGA-BP-4330 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4331     TCGA-BP-4337     TCGA-BP-4338     TCGA-BP-4341 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4342     TCGA-BP-4343     TCGA-BP-4345     TCGA-BP-4346 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4347     TCGA-BP-4349     TCGA-BP-4351     TCGA-BP-4352 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4354     TCGA-BP-4355     TCGA-BP-4756     TCGA-BP-4758 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4759     TCGA-BP-4760     TCGA-BP-4761     TCGA-BP-4762 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4763     TCGA-BP-4765     TCGA-BP-4766     TCGA-BP-4768 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4770     TCGA-BP-4771     TCGA-BP-4774     TCGA-BP-4775 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4777     TCGA-BP-4781     TCGA-BP-4787     TCGA-BP-4789 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4790     TCGA-BP-4797     TCGA-BP-4798     TCGA-BP-4799 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4801     TCGA-BP-4803     TCGA-BP-4804     TCGA-BP-4807 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4960     TCGA-BP-4961     TCGA-BP-4962     TCGA-BP-4963 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4964     TCGA-BP-4965     TCGA-BP-4967     TCGA-BP-4968 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4970     TCGA-BP-4971     TCGA-BP-4972     TCGA-BP-4973 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4974     TCGA-BP-4975     TCGA-BP-4976     TCGA-BP-4977 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4981     TCGA-BP-4982     TCGA-BP-4983     TCGA-BP-4985 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4986     TCGA-BP-4987     TCGA-BP-4988     TCGA-BP-4989 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4991     TCGA-BP-4992     TCGA-BP-4993     TCGA-BP-4994 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4995     TCGA-BP-4998     TCGA-BP-4999     TCGA-BP-5000 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5001     TCGA-BP-5004     TCGA-BP-5006     TCGA-BP-5007 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5008     TCGA-BP-5009     TCGA-BP-5010     TCGA-BP-5168 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5169     TCGA-BP-5170     TCGA-BP-5173     TCGA-BP-5174 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5175     TCGA-BP-5176     TCGA-BP-5177     TCGA-BP-5178 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5180     TCGA-BP-5181     TCGA-BP-5182     TCGA-BP-5183 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5184     TCGA-BP-5185     TCGA-BP-5187     TCGA-BP-5189 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5190     TCGA-BP-5191     TCGA-BP-5192     TCGA-BP-5194 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5195     TCGA-BP-5196     TCGA-BP-5198     TCGA-BP-5199 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5200     TCGA-BP-5201     TCGA-BP-5202     TCGA-BQ-5875 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5877     TCGA-BQ-5878     TCGA-BQ-5879     TCGA-BQ-5880 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5881     TCGA-BQ-5882     TCGA-BQ-5883     TCGA-BQ-5885 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7046     TCGA-BQ-7048     TCGA-BQ-7049 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053     TCGA-BQ-7055 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059     TCGA-BQ-7060 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7061     TCGA-BQ-7062     TCGA-CJ-4634     TCGA-CJ-4635 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4638     TCGA-CJ-4640     TCGA-CJ-4868     TCGA-CJ-4869 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4870     TCGA-CJ-4871     TCGA-CJ-4872     TCGA-CJ-4873 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4874     TCGA-CJ-4875     TCGA-CJ-4876     TCGA-CJ-4878 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4881     TCGA-CJ-4882     TCGA-CJ-4884     TCGA-CJ-4885 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4886     TCGA-CJ-4887     TCGA-CJ-4888     TCGA-CJ-4889 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4890     TCGA-CJ-4891     TCGA-CJ-4892     TCGA-CJ-4893 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4894     TCGA-CJ-4895     TCGA-CJ-4897     TCGA-CJ-4899 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4900     TCGA-CJ-4901     TCGA-CJ-4902     TCGA-CJ-4903 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4904     TCGA-CJ-4905     TCGA-CJ-4907     TCGA-CJ-4908 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4912     TCGA-CJ-4913     TCGA-CJ-4916     TCGA-CJ-4918 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4920     TCGA-CJ-4923     TCGA-CJ-5671     TCGA-CJ-5672 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-5675     TCGA-CJ-5676     TCGA-CJ-5677     TCGA-CJ-5678 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-5679     TCGA-CJ-5680     TCGA-CJ-5681     TCGA-CJ-5682 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-5683     TCGA-CJ-5684     TCGA-CJ-5686     TCGA-CJ-6027 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-6028     TCGA-CJ-6030     TCGA-CJ-6031     TCGA-CJ-6032 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-6033     TCGA-CW-5580     TCGA-CW-5581     TCGA-CW-5583 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CW-5585     TCGA-CW-5588     TCGA-CW-5589     TCGA-CW-5591 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CW-6087     TCGA-CW-6090     TCGA-CW-6093     TCGA-CW-6097 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-4853     TCGA-CZ-4854     TCGA-CZ-4856     TCGA-CZ-4857 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-4858     TCGA-CZ-4859     TCGA-CZ-4861     TCGA-CZ-4862 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-4863     TCGA-CZ-4865     TCGA-CZ-4866     TCGA-CZ-5451 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5452     TCGA-CZ-5453     TCGA-CZ-5454     TCGA-CZ-5455 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5456     TCGA-CZ-5457     TCGA-CZ-5458     TCGA-CZ-5459 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5460     TCGA-CZ-5461     TCGA-CZ-5462     TCGA-CZ-5463 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5465     TCGA-CZ-5466     TCGA-CZ-5467     TCGA-CZ-5468 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5469     TCGA-CZ-5470     TCGA-CZ-5982     TCGA-CZ-5984 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5985     TCGA-CZ-5986     TCGA-CZ-5987     TCGA-CZ-5988 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5989     TCGA-DV-5565     TCGA-DV-5566     TCGA-DV-5568 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DV-5569     TCGA-DV-5574     TCGA-DV-5575     TCGA-DV-5576 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DW-5560     TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DW-7838     TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7841 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DW-7842     TCGA-DW-7963     TCGA-DZ-6131     TCGA-DZ-6132 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DZ-6133     TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EU-5904 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EU-5905     TCGA-EU-5906     TCGA-EU-5907     TCGA-EV-5901 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EV-5902     TCGA-EV-5903     TCGA-F9-A4JJ     TCGA-F9-A7Q0 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-F9-A7VF     TCGA-F9-A8NY     TCGA-F9-A97G     TCGA-G7-6789 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-6790     TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-6796     TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-A4TM     TCGA-G7-A8LB     TCGA-G7-A8LC     TCGA-G7-A8LD 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-A8LE     TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-GL-8500     TCGA-GL-A4EM     TCGA-GL-A59R     TCGA-GL-A9DC 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-GL-A9DD     TCGA-GL-A9DE     TCGA-HE-7128     TCGA-HE-7129 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HE-7130     TCGA-HE-A5NF     TCGA-HE-A5NH     TCGA-HE-A5NI 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HE-A5NJ     TCGA-HE-A5NK     TCGA-HE-A5NL     TCGA-IA-A40U 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IA-A40X     TCGA-IA-A40Y     TCGA-IA-A83V     TCGA-IA-A83W 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IZ-8195     TCGA-IZ-8196     TCGA-IZ-A6M8     TCGA-J7-6720 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J7-8537     TCGA-J7-A8I2     TCGA-KL-8324     TCGA-KL-8325 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8326     TCGA-KL-8327     TCGA-KL-8328     TCGA-KL-8329 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8330     TCGA-KL-8331     TCGA-KL-8332     TCGA-KL-8333 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8334     TCGA-KL-8335     TCGA-KL-8336     TCGA-KL-8337 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8338     TCGA-KL-8339     TCGA-KL-8340     TCGA-KL-8341 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8342     TCGA-KL-8343     TCGA-KL-8344     TCGA-KL-8345 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8346     TCGA-KM-8438     TCGA-KM-8439     TCGA-KM-8440 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KM-8441     TCGA-KM-8442     TCGA-KM-8443     TCGA-KM-8476 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KM-8639     TCGA-KN-8418     TCGA-KN-8419     TCGA-KN-8421 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8423     TCGA-KN-8424     TCGA-KN-8425     TCGA-KN-8426 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8427     TCGA-KN-8428     TCGA-KN-8429     TCGA-KN-8430 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8431     TCGA-KN-8432     TCGA-KN-8433     TCGA-KN-8434 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8435     TCGA-KN-8436     TCGA-KN-8437     TCGA-KO-8403 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8404     TCGA-KO-8405     TCGA-KO-8406     TCGA-KO-8407 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8408     TCGA-KO-8409     TCGA-KO-8410     TCGA-KO-8411 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8413     TCGA-KO-8414     TCGA-KO-8415     TCGA-KO-8416 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8417     TCGA-KV-A6GD     TCGA-KV-A6GE     TCGA-KV-A74V 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-MH-A55Z     TCGA-MH-A560     TCGA-MH-A562     TCGA-MH-A855 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P4-A5E6     TCGA-P4-A5E7     TCGA-P4-A5E8     TCGA-P4-A5EA 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P4-A5EB     TCGA-P4-A5ED     TCGA-P4-AAVL     TCGA-P4-AAVM 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-PJ-A5Z8     TCGA-PJ-A5Z9     TCGA-PJ-A8JU     TCGA-Q2-A5QZ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A71R     TCGA-SX-A71U     TCGA-SX-A7SM     TCGA-SX-A7SN 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A7SO     TCGA-SX-A7SP     TCGA-SX-A7SQ     TCGA-SX-A7SR 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A7SS     TCGA-UN-AAZ9     TCGA-UZ-A9PJ     TCGA-UZ-A9PK 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PL     TCGA-UZ-A9PM     TCGA-UZ-A9PN     TCGA-UZ-A9PO 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PP     TCGA-UZ-A9PR     TCGA-UZ-A9PS     TCGA-UZ-A9PU 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PV     TCGA-UZ-A9PX     TCGA-UZ-A9PZ     TCGA-UZ-A9Q0 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9Q1     TCGA-V9-A7HT     TCGA-WN-A9G9     TCGA-Y8-A894 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-Y8-A895     TCGA-Y8-A896     TCGA-Y8-A897     TCGA-Y8-A8RY 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-Y8-A8RZ     TCGA-Y8-A8S0     TCGA-Y8-A8S1 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        3      0      1      0
  EMG1 WILD-TYPE    104    179    232    262
D60V7, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            3            104
  CLUS_2            0            179
  CLUS_3            1            232
  CLUS_4            0            262
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  EMG1 MUTATED        3      0      0      0      0      0      1      0      0
  EMG1 WILD-TYPE     81     50    122     77    107     32     89     52    167
D60V8, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            3             81
  CLUS_2            0             50
  CLUS_3            0            122
  CLUS_4            0             77
  CLUS_5            0            107
  CLUS_6            0             32
  CLUS_7            1             89
  CLUS_8            0             52
  CLUS_9            0            167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        2      1      1
  EMG1 WILD-TYPE    327    163    281
D60V9, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2            327
  CLUS_2            1            163
  CLUS_3            1            281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        3      0      1      0
  EMG1 WILD-TYPE     70    300    197    204
D60V10, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            3             70
  CLUS_2            0            300
  CLUS_3            1            197
  CLUS_4            0            204
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        0      1      0      0
  EMG1 WILD-TYPE    155     65     56     96
D60V11, multiclass
[1] "Remove cluster labels:" "EMG1 MUTATED"          
clus
  EMG1 MUTATED EMG1 WILD-TYPE 
             1            372 
    TCGA-2K-A9WE     TCGA-2Z-A9J1     TCGA-2Z-A9J2     TCGA-2Z-A9J3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9J5     TCGA-2Z-A9J6     TCGA-2Z-A9JD     TCGA-2Z-A9JG 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9JI     TCGA-2Z-A9JJ     TCGA-2Z-A9JK     TCGA-2Z-A9JL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9JM     TCGA-2Z-A9JN     TCGA-2Z-A9JO     TCGA-2Z-A9JP 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9JQ     TCGA-2Z-A9JR     TCGA-2Z-A9JT     TCGA-4A-A93W 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-4A-A93X     TCGA-4A-A93Y     TCGA-5P-A9JV     TCGA-5P-A9JW 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-5P-A9JY     TCGA-5P-A9JZ     TCGA-5P-A9K0     TCGA-5P-A9K6 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-5P-A9K8     TCGA-5P-A9KA     TCGA-5P-A9KC     TCGA-5P-A9KE 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A3-3317     TCGA-A3-3358     TCGA-A3-3387     TCGA-A4-7286 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7585     TCGA-A4-7734 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-7828     TCGA-A4-7915     TCGA-A4-7996     TCGA-A4-7997 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-8098     TCGA-A4-8310     TCGA-A4-8312     TCGA-A4-8515 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-8517     TCGA-A4-8518     TCGA-A4-8630     TCGA-A4-A57E 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-A5XZ     TCGA-A4-A5Y0     TCGA-A4-A5Y1     TCGA-A4-A772 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-AK-3458     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3472 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-AL-3473     TCGA-AL-7173     TCGA-AT-A5NU     TCGA-B0-4700 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4706     TCGA-B0-4710     TCGA-B0-4712     TCGA-B0-4810 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4811     TCGA-B0-4836     TCGA-B0-4837     TCGA-B0-4852 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5080     TCGA-B0-5085     TCGA-B0-5088     TCGA-B0-5399 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5691     TCGA-B0-5692     TCGA-B0-5693     TCGA-B0-5694 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5695     TCGA-B0-5696     TCGA-B0-5699     TCGA-B0-5702 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5705     TCGA-B0-5709     TCGA-B1-5398     TCGA-B1-A47N 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B1-A47O     TCGA-B1-A654     TCGA-B1-A656     TCGA-B1-A657 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B2-3923     TCGA-B2-3924     TCGA-B2-5633     TCGA-B2-5635 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B3-3925     TCGA-B3-4104     TCGA-B3-8121     TCGA-B4-5377 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B4-5836     TCGA-B8-4621     TCGA-B8-5545     TCGA-B8-5550 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-5551     TCGA-B8-5552     TCGA-B8-5553     TCGA-B9-4115 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B9-4117     TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-A44B 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B9-A5W9     TCGA-B9-A69E     TCGA-B9-A8YH     TCGA-B9-A8YI 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4173     TCGA-BP-4340     TCGA-BP-4761     TCGA-BP-4770 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4787     TCGA-BP-4789     TCGA-BP-4790     TCGA-BP-4804 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4807     TCGA-BP-4961     TCGA-BP-4967     TCGA-BP-4968 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4970     TCGA-BP-4974     TCGA-BP-4976     TCGA-BP-4981 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4982     TCGA-BP-4985     TCGA-BP-4988     TCGA-BP-4989 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4992     TCGA-BP-4995     TCGA-BP-4998     TCGA-BP-5001 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5008     TCGA-BP-5009     TCGA-BQ-5876     TCGA-BQ-5877 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5878     TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5882     TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5886 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-CJ-4870 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4875     TCGA-CJ-4876     TCGA-CJ-4878     TCGA-CJ-4881 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4887     TCGA-CJ-4889     TCGA-CJ-4890     TCGA-CJ-4895 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4900     TCGA-CJ-5671     TCGA-CJ-5675     TCGA-CJ-5676 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-5681     TCGA-CJ-5683     TCGA-CJ-5686     TCGA-CJ-6031 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-6032     TCGA-CW-5585     TCGA-CW-5589     TCGA-CW-6087 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-4854     TCGA-CZ-4857     TCGA-CZ-4858     TCGA-CZ-5453 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5454     TCGA-CZ-5455     TCGA-CZ-5457     TCGA-CZ-5459 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5462     TCGA-CZ-5463     TCGA-CZ-5466     TCGA-CZ-5467 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5469     TCGA-CZ-5470     TCGA-CZ-5989     TCGA-DV-5565 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DV-5566     TCGA-DV-5569     TCGA-DW-5560     TCGA-DW-5561 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DW-7834     TCGA-DW-7836     TCGA-DW-7837     TCGA-DW-7838 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7842     TCGA-DZ-6131 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DZ-6132     TCGA-DZ-6133     TCGA-DZ-6134     TCGA-DZ-6135 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EU-5904     TCGA-EV-5901     TCGA-EV-5902     TCGA-EV-5903 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-F9-A4JJ     TCGA-F9-A7Q0     TCGA-F9-A8NY     TCGA-F9-A97G 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-6789     TCGA-G7-6790     TCGA-G7-6792     TCGA-G7-6793 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-6795     TCGA-G7-6796     TCGA-G7-7501     TCGA-G7-7502 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-A4TM     TCGA-G7-A8LB     TCGA-G7-A8LC     TCGA-G7-A8LD 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-A8LE     TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-GL-8500     TCGA-GL-A4EM     TCGA-GL-A59T     TCGA-GL-A9DC 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-GL-A9DD     TCGA-GL-A9DE     TCGA-HE-7128     TCGA-HE-7130 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HE-A5NJ     TCGA-HE-A5NL     TCGA-IA-A40U     TCGA-IA-A40X 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IA-A40Y     TCGA-IA-A83S     TCGA-IA-A83T     TCGA-IA-A83V 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IA-A83W     TCGA-IZ-8195     TCGA-IZ-8196     TCGA-IZ-A6M9 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J7-6720     TCGA-J7-8537     TCGA-J7-A8I2     TCGA-KL-8323 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8324     TCGA-KL-8327     TCGA-KL-8328     TCGA-KL-8331 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8332     TCGA-KL-8333     TCGA-KL-8334     TCGA-KL-8335 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8336     TCGA-KL-8338     TCGA-KL-8339     TCGA-KL-8340 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8341     TCGA-KL-8342     TCGA-KL-8343     TCGA-KL-8344 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8345     TCGA-KM-8438     TCGA-KM-8439     TCGA-KM-8441 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KM-8442     TCGA-KM-8639     TCGA-KN-8418     TCGA-KN-8419 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8422     TCGA-KN-8423     TCGA-KN-8424     TCGA-KN-8426 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8427     TCGA-KN-8428     TCGA-KN-8429     TCGA-KN-8430 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8431     TCGA-KN-8432     TCGA-KN-8433     TCGA-KN-8434 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8436     TCGA-KN-8437     TCGA-KO-8404     TCGA-KO-8405 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8408     TCGA-KO-8409     TCGA-KO-8410     TCGA-KO-8413 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8415     TCGA-KO-8416     TCGA-KO-8417     TCGA-KV-A6GD 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-KV-A74V     TCGA-MH-A854     TCGA-MH-A855 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-MH-A856     TCGA-MH-A857     TCGA-O9-A75Z     TCGA-P4-A5E6 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P4-A5E7     TCGA-P4-A5E8     TCGA-P4-A5EA     TCGA-P4-AAVL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P4-AAVM     TCGA-PJ-A5Z8     TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A71R     TCGA-SX-A71S     TCGA-SX-A71U     TCGA-SX-A71W 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A7SL     TCGA-SX-A7SM     TCGA-SX-A7SN     TCGA-SX-A7SO 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A7SP     TCGA-SX-A7SR     TCGA-SX-A7SS     TCGA-SX-A7SU 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PJ     TCGA-UZ-A9PK     TCGA-UZ-A9PL     TCGA-UZ-A9PN 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PO     TCGA-UZ-A9PP     TCGA-UZ-A9PR     TCGA-UZ-A9PU 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PV     TCGA-UZ-A9PX     TCGA-UZ-A9PZ     TCGA-V9-A7HT 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-WN-A9G9     TCGA-WN-AB4C     TCGA-Y8-A897     TCGA-Y8-A898 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-Y8-A8RY     TCGA-Y8-A8RZ     TCGA-Y8-A8S0     TCGA-Y8-A8S1 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EMG1 MUTATED        0      0      0      0      0      0      1
  EMG1 WILD-TYPE     90     73     50     19     37     58     45
D60V12, multiclass
[1] "Remove cluster labels:" "EMG1 MUTATED"          
clus
  EMG1 MUTATED EMG1 WILD-TYPE 
             1            372 
    TCGA-2K-A9WE     TCGA-2Z-A9J1     TCGA-2Z-A9J2     TCGA-2Z-A9J3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9J5     TCGA-2Z-A9J6     TCGA-2Z-A9JD     TCGA-2Z-A9JG 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9JI     TCGA-2Z-A9JJ     TCGA-2Z-A9JK     TCGA-2Z-A9JL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9JM     TCGA-2Z-A9JN     TCGA-2Z-A9JO     TCGA-2Z-A9JP 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2Z-A9JQ     TCGA-2Z-A9JR     TCGA-2Z-A9JT     TCGA-4A-A93W 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-4A-A93X     TCGA-4A-A93Y     TCGA-5P-A9JV     TCGA-5P-A9JW 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-5P-A9JY     TCGA-5P-A9JZ     TCGA-5P-A9K0     TCGA-5P-A9K6 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-5P-A9K8     TCGA-5P-A9KA     TCGA-5P-A9KC     TCGA-5P-A9KE 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A3-3317     TCGA-A3-3358     TCGA-A3-3387     TCGA-A4-7286 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7585     TCGA-A4-7734 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-7828     TCGA-A4-7915     TCGA-A4-7996     TCGA-A4-7997 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-8098     TCGA-A4-8310     TCGA-A4-8312     TCGA-A4-8515 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-8517     TCGA-A4-8518     TCGA-A4-8630     TCGA-A4-A57E 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-A4-A5XZ     TCGA-A4-A5Y0     TCGA-A4-A5Y1     TCGA-A4-A772 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-AK-3458     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3472 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-AL-3473     TCGA-AL-7173     TCGA-AT-A5NU     TCGA-B0-4700 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4706     TCGA-B0-4710     TCGA-B0-4712     TCGA-B0-4810 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-4811     TCGA-B0-4836     TCGA-B0-4837     TCGA-B0-4852 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5080     TCGA-B0-5085     TCGA-B0-5088     TCGA-B0-5399 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5691     TCGA-B0-5692     TCGA-B0-5693     TCGA-B0-5694 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5695     TCGA-B0-5696     TCGA-B0-5699     TCGA-B0-5702 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B0-5705     TCGA-B0-5709     TCGA-B1-5398     TCGA-B1-A47N 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B1-A47O     TCGA-B1-A654     TCGA-B1-A656     TCGA-B1-A657 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B2-3923     TCGA-B2-3924     TCGA-B2-5633     TCGA-B2-5635 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B3-3925     TCGA-B3-4104     TCGA-B3-8121     TCGA-B4-5377 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B4-5836     TCGA-B8-4621     TCGA-B8-5545     TCGA-B8-5550 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B8-5551     TCGA-B8-5552     TCGA-B8-5553     TCGA-B9-4115 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B9-4117     TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-A44B 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-B9-A5W9     TCGA-B9-A69E     TCGA-B9-A8YH     TCGA-B9-A8YI 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4173     TCGA-BP-4340     TCGA-BP-4761     TCGA-BP-4770 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4787     TCGA-BP-4789     TCGA-BP-4790     TCGA-BP-4804 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4807     TCGA-BP-4961     TCGA-BP-4967     TCGA-BP-4968 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4970     TCGA-BP-4974     TCGA-BP-4976     TCGA-BP-4981 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4982     TCGA-BP-4985     TCGA-BP-4988     TCGA-BP-4989 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-4992     TCGA-BP-4995     TCGA-BP-4998     TCGA-BP-5001 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BP-5008     TCGA-BP-5009     TCGA-BQ-5876     TCGA-BQ-5877 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5878     TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5882     TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5886 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-CJ-4870 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4875     TCGA-CJ-4876     TCGA-CJ-4878     TCGA-CJ-4881 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4887     TCGA-CJ-4889     TCGA-CJ-4890     TCGA-CJ-4895 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-4900     TCGA-CJ-5671     TCGA-CJ-5675     TCGA-CJ-5676 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-5681     TCGA-CJ-5683     TCGA-CJ-5686     TCGA-CJ-6031 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CJ-6032     TCGA-CW-5585     TCGA-CW-5589     TCGA-CW-6087 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-4854     TCGA-CZ-4857     TCGA-CZ-4858     TCGA-CZ-5453 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5454     TCGA-CZ-5455     TCGA-CZ-5457     TCGA-CZ-5459 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5462     TCGA-CZ-5463     TCGA-CZ-5466     TCGA-CZ-5467 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CZ-5469     TCGA-CZ-5470     TCGA-CZ-5989     TCGA-DV-5565 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DV-5566     TCGA-DV-5569     TCGA-DW-5560     TCGA-DW-5561 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DW-7834     TCGA-DW-7836     TCGA-DW-7837     TCGA-DW-7838 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DW-7839     TCGA-DW-7840     TCGA-DW-7842     TCGA-DZ-6131 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-DZ-6132     TCGA-DZ-6133     TCGA-DZ-6134     TCGA-DZ-6135 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EU-5904     TCGA-EV-5901     TCGA-EV-5902     TCGA-EV-5903 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-F9-A4JJ     TCGA-F9-A7Q0     TCGA-F9-A8NY     TCGA-F9-A97G 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-6789     TCGA-G7-6790     TCGA-G7-6792     TCGA-G7-6793 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-6795     TCGA-G7-6796     TCGA-G7-7501     TCGA-G7-7502 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-A4TM     TCGA-G7-A8LB     TCGA-G7-A8LC     TCGA-G7-A8LD 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G7-A8LE     TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-GL-8500     TCGA-GL-A4EM     TCGA-GL-A59T     TCGA-GL-A9DC 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-GL-A9DD     TCGA-GL-A9DE     TCGA-HE-7128     TCGA-HE-7130 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HE-A5NJ     TCGA-HE-A5NL     TCGA-IA-A40U     TCGA-IA-A40X 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IA-A40Y     TCGA-IA-A83S     TCGA-IA-A83T     TCGA-IA-A83V 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-IA-A83W     TCGA-IZ-8195     TCGA-IZ-8196     TCGA-IZ-A6M9 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J7-6720     TCGA-J7-8537     TCGA-J7-A8I2     TCGA-KL-8323 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8324     TCGA-KL-8327     TCGA-KL-8328     TCGA-KL-8331 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8332     TCGA-KL-8333     TCGA-KL-8334     TCGA-KL-8335 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8336     TCGA-KL-8338     TCGA-KL-8339     TCGA-KL-8340 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8341     TCGA-KL-8342     TCGA-KL-8343     TCGA-KL-8344 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KL-8345     TCGA-KM-8438     TCGA-KM-8439     TCGA-KM-8441 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KM-8442     TCGA-KM-8639     TCGA-KN-8418     TCGA-KN-8419 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8422     TCGA-KN-8423     TCGA-KN-8424     TCGA-KN-8426 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8427     TCGA-KN-8428     TCGA-KN-8429     TCGA-KN-8430 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8431     TCGA-KN-8432     TCGA-KN-8433     TCGA-KN-8434 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KN-8436     TCGA-KN-8437     TCGA-KO-8404     TCGA-KO-8405 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8408     TCGA-KO-8409     TCGA-KO-8410     TCGA-KO-8413 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KO-8415     TCGA-KO-8416     TCGA-KO-8417     TCGA-KV-A6GD 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KV-A6GE     TCGA-KV-A74V     TCGA-MH-A854     TCGA-MH-A855 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-MH-A856     TCGA-MH-A857     TCGA-O9-A75Z     TCGA-P4-A5E6 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P4-A5E7     TCGA-P4-A5E8     TCGA-P4-A5EA     TCGA-P4-AAVL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-P4-AAVM     TCGA-PJ-A5Z8     TCGA-PJ-A5Z9     TCGA-Q2-A5QZ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A71R     TCGA-SX-A71S     TCGA-SX-A71U     TCGA-SX-A71W 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A7SL     TCGA-SX-A7SM     TCGA-SX-A7SN     TCGA-SX-A7SO 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-SX-A7SP     TCGA-SX-A7SR     TCGA-SX-A7SS     TCGA-SX-A7SU 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PJ     TCGA-UZ-A9PK     TCGA-UZ-A9PL     TCGA-UZ-A9PN 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PO     TCGA-UZ-A9PP     TCGA-UZ-A9PR     TCGA-UZ-A9PU 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-UZ-A9PV     TCGA-UZ-A9PX     TCGA-UZ-A9PZ     TCGA-V9-A7HT 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-WN-A9G9     TCGA-WN-AB4C     TCGA-Y8-A897     TCGA-Y8-A898 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-Y8-A8RY     TCGA-Y8-A8RZ     TCGA-Y8-A8S0     TCGA-Y8-A8S1 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 

Clustering(61) Variable = LHX1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHX1 MUTATED        1      0      0      0
  LHX1 WILD-TYPE     16     16     10     15
D61V1, multiclass
[1] "Remove cluster labels:" "LHX1 MUTATED"          
clus
  LHX1 MUTATED LHX1 WILD-TYPE 
             1             57 
    TCGA-A3-3311     TCGA-A3-3313     TCGA-A3-3317     TCGA-A3-3322 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3374     TCGA-AK-3427 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-AK-3456     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-AL-3468     TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B2-3923     TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B8-4143     TCGA-B8-4148     TCGA-B8-4154     TCGA-B8-4619 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617     TCGA-BP-4161 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-4162     TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CJ-4634     TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CJ-4639     TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CJ-4644 
"LHX1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LHX1 MUTATED        0      0      0      1      0
  LHX1 WILD-TYPE      7     16     16      9      9
D61V2, multiclass
[1] "Remove cluster labels:" "LHX1 MUTATED"          
clus
  LHX1 MUTATED LHX1 WILD-TYPE 
             1             57 
    TCGA-A3-3311     TCGA-A3-3313     TCGA-A3-3317     TCGA-A3-3322 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A3-3323     TCGA-A3-3326     TCGA-A3-3331     TCGA-A3-3347 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A3-3349     TCGA-A3-3362     TCGA-A3-3374     TCGA-AK-3427 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-AK-3440     TCGA-AK-3443     TCGA-AK-3453     TCGA-AK-3455 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-AK-3456     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3467 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-AL-3468     TCGA-AL-3472     TCGA-AL-3473     TCGA-AS-3777 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B2-3923     TCGA-B2-3924     TCGA-B2-4098     TCGA-B2-4099 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B3-3925     TCGA-B3-3926     TCGA-B3-4103     TCGA-B3-4104 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B8-4143     TCGA-B8-4148     TCGA-B8-4154     TCGA-B8-4619 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B8-4620     TCGA-B9-4113     TCGA-B9-4114     TCGA-B9-4115 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B9-4116     TCGA-B9-4117     TCGA-B9-4617     TCGA-BP-4161 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-4162     TCGA-BP-4163     TCGA-BP-4164     TCGA-BP-4167 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CJ-4634     TCGA-CJ-4636     TCGA-CJ-4637     TCGA-CJ-4638 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CJ-4639     TCGA-CJ-4640     TCGA-CJ-4641     TCGA-CJ-4643 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CJ-4644 
"LHX1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LHX1 MUTATED        2      1      1
  LHX1 WILD-TYPE    311    167    297
D61V3, multiclass
        clus
vv       LHX1 MUTATED LHX1 WILD-TYPE
  CLUS_1            2            311
  CLUS_2            1            167
  CLUS_3            1            297
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LHX1 MUTATED        1      0      0      1      1
  LHX1 WILD-TYPE     94    111    142     62    184
D61V4, multiclass
        clus
vv       LHX1 MUTATED LHX1 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            0            111
  CLUS_3            0            142
  CLUS_4            1             62
  CLUS_5            1            184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHX1 MUTATED        0      1      1      1
  LHX1 WILD-TYPE    163    160    169    174
D61V5, multiclass
        clus
vv       LHX1 MUTATED LHX1 WILD-TYPE
  CLUS_1            0            163
  CLUS_2            1            160
  CLUS_3            1            169
  CLUS_4            1            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LHX1 MUTATED        2      1      0      0      0      0      0
  LHX1 WILD-TYPE    176     61    105    129     52     61     82
D61V6, multiclass
        clus
vv       LHX1 MUTATED LHX1 WILD-TYPE
  CLUS_1            2            176
  CLUS_2            1             61
  CLUS_3            0            105
  CLUS_4            0            129
  CLUS_5            0             52
  CLUS_6            0             61
  CLUS_7            0             82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHX1 MUTATED        1      0      2      1
  LHX1 WILD-TYPE    106    179    231    261
D61V7, multiclass
        clus
vv       LHX1 MUTATED LHX1 WILD-TYPE
  CLUS_1            1            106
  CLUS_2            0            179
  CLUS_3            2            231
  CLUS_4            1            261
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LHX1 MUTATED        1      0      1      1      0      0      1      0      0
  LHX1 WILD-TYPE     83     50    121     76    107     32     89     52    167
D61V8, multiclass
        clus
vv       LHX1 MUTATED LHX1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             50
  CLUS_3            1            121
  CLUS_4            1             76
  CLUS_5            0            107
  CLUS_6            0             32
  CLUS_7            1             89
  CLUS_8            0             52
  CLUS_9            0            167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LHX1 MUTATED        2      0      2
  LHX1 WILD-TYPE    327    164    280
D61V9, multiclass
        clus
vv       LHX1 MUTATED LHX1 WILD-TYPE
  CLUS_1            2            327
  CLUS_2            0            164
  CLUS_3            2            280
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHX1 MUTATED        1      0      2      1
  LHX1 WILD-TYPE     72    300    196    203
D61V10, multiclass
        clus
vv       LHX1 MUTATED LHX1 WILD-TYPE
  CLUS_1            1             72
  CLUS_2            0            300
  CLUS_3            2            196
  CLUS_4            1            203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHX1 MUTATED        1      0      0      1
  LHX1 WILD-TYPE    154     66     56     95
D61V11, multiclass
[1] "Remove cluster labels:" "LHX1 MUTATED"          
clus
  LHX1 MUTATED LHX1 WILD-TYPE 
             2            371 
    TCGA-2K-A9WE     TCGA-2Z-A9J1     TCGA-2Z-A9J2     TCGA-2Z-A9J3 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-2Z-A9J5     TCGA-2Z-A9J6     TCGA-2Z-A9JD     TCGA-2Z-A9JG 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-2Z-A9JI     TCGA-2Z-A9JJ     TCGA-2Z-A9JK     TCGA-2Z-A9JL 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-2Z-A9JM     TCGA-2Z-A9JN     TCGA-2Z-A9JO     TCGA-2Z-A9JP 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-2Z-A9JQ     TCGA-2Z-A9JR     TCGA-2Z-A9JT     TCGA-4A-A93W 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-4A-A93X     TCGA-4A-A93Y     TCGA-5P-A9JV     TCGA-5P-A9JW 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-5P-A9JY     TCGA-5P-A9JZ     TCGA-5P-A9K0     TCGA-5P-A9K6 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-5P-A9K8     TCGA-5P-A9KA     TCGA-5P-A9KC     TCGA-5P-A9KE 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A3-3317     TCGA-A3-3358     TCGA-A3-3387     TCGA-A4-7286 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A4-7287     TCGA-A4-7585     TCGA-A4-7734     TCGA-A4-7828 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A4-7915     TCGA-A4-7996     TCGA-A4-7997     TCGA-A4-8098 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A4-8310     TCGA-A4-8312     TCGA-A4-8515     TCGA-A4-8517 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A4-8518     TCGA-A4-8630     TCGA-A4-A57E     TCGA-A4-A5XZ 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A4-A5Y0     TCGA-A4-A5Y1     TCGA-A4-A772     TCGA-AK-3440 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-AK-3458     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3472 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-AL-3473     TCGA-AL-7173     TCGA-AT-A5NU     TCGA-B0-4700 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B0-4706     TCGA-B0-4710     TCGA-B0-4712     TCGA-B0-4810 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B0-4811     TCGA-B0-4836     TCGA-B0-4837     TCGA-B0-4852 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B0-5080     TCGA-B0-5085     TCGA-B0-5088     TCGA-B0-5399 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B0-5691     TCGA-B0-5692     TCGA-B0-5693     TCGA-B0-5694 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B0-5695     TCGA-B0-5696     TCGA-B0-5699     TCGA-B0-5702 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B0-5705     TCGA-B0-5709     TCGA-B1-5398     TCGA-B1-A47N 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B1-A47O     TCGA-B1-A654     TCGA-B1-A656     TCGA-B1-A657 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B2-3923     TCGA-B2-3924     TCGA-B2-5633     TCGA-B2-5635 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B3-3925     TCGA-B3-4104     TCGA-B3-8121     TCGA-B4-5377 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B4-5836     TCGA-B8-4621     TCGA-B8-5545     TCGA-B8-5550 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B8-5551     TCGA-B8-5552     TCGA-B8-5553     TCGA-B9-4115 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B9-4117     TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-A44B 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B9-A5W9     TCGA-B9-A69E     TCGA-B9-A8YH     TCGA-B9-A8YI 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-4173     TCGA-BP-4340     TCGA-BP-4761     TCGA-BP-4770 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-4787     TCGA-BP-4789     TCGA-BP-4790     TCGA-BP-4804 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-4807     TCGA-BP-4961     TCGA-BP-4967     TCGA-BP-4968 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-4970     TCGA-BP-4974     TCGA-BP-4976     TCGA-BP-4981 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-4982     TCGA-BP-4985     TCGA-BP-4988     TCGA-BP-4989 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-4992     TCGA-BP-4995     TCGA-BP-4998     TCGA-BP-5001 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-5008     TCGA-BP-5009     TCGA-BQ-5876     TCGA-BQ-5877 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-5878     TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-5882     TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5886 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-CJ-4870 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CJ-4875     TCGA-CJ-4876     TCGA-CJ-4878     TCGA-CJ-4881 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CJ-4887     TCGA-CJ-4889     TCGA-CJ-4890     TCGA-CJ-4895 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CJ-4900     TCGA-CJ-5671     TCGA-CJ-5676     TCGA-CJ-5681 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CJ-5683     TCGA-CJ-5686     TCGA-CJ-6031     TCGA-CJ-6032 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CW-5585     TCGA-CW-5589     TCGA-CW-6087     TCGA-CZ-4854 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CZ-4857     TCGA-CZ-4858     TCGA-CZ-5453     TCGA-CZ-5454 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CZ-5455     TCGA-CZ-5457     TCGA-CZ-5459     TCGA-CZ-5462 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CZ-5463     TCGA-CZ-5466     TCGA-CZ-5467     TCGA-CZ-5469 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CZ-5470     TCGA-CZ-5989     TCGA-DV-5565     TCGA-DV-5566 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-DV-5569     TCGA-DW-5560     TCGA-DW-5561     TCGA-DW-7834 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-DW-7836     TCGA-DW-7837     TCGA-DW-7838     TCGA-DW-7839 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-DW-7840     TCGA-DW-7842     TCGA-DZ-6131     TCGA-DZ-6132 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-DZ-6133     TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EU-5904 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-EV-5901     TCGA-EV-5902     TCGA-EV-5903     TCGA-F9-A4JJ 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-F9-A7Q0     TCGA-F9-A8NY     TCGA-F9-A97G     TCGA-G7-6789 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-G7-6790     TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-G7-6796     TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-G7-A8LB     TCGA-G7-A8LC     TCGA-G7-A8LD     TCGA-G7-A8LE 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-GL-A4EM     TCGA-GL-A59T     TCGA-GL-A9DC     TCGA-GL-A9DD 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-GL-A9DE     TCGA-HE-7128     TCGA-HE-7130     TCGA-HE-A5NJ 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-HE-A5NL     TCGA-IA-A40U     TCGA-IA-A40X     TCGA-IA-A40Y 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-IA-A83S     TCGA-IA-A83T     TCGA-IA-A83V     TCGA-IA-A83W 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-IZ-8195     TCGA-IZ-8196     TCGA-IZ-A6M9     TCGA-J7-6720 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-J7-8537     TCGA-J7-A8I2     TCGA-KL-8323     TCGA-KL-8324 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KL-8327     TCGA-KL-8328     TCGA-KL-8331     TCGA-KL-8332 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KL-8333     TCGA-KL-8334     TCGA-KL-8335     TCGA-KL-8336 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KL-8338     TCGA-KL-8339     TCGA-KL-8340     TCGA-KL-8341 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KL-8342     TCGA-KL-8343     TCGA-KL-8344     TCGA-KL-8345 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KM-8438     TCGA-KM-8439     TCGA-KM-8441     TCGA-KM-8442 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KM-8639     TCGA-KN-8418     TCGA-KN-8419     TCGA-KN-8422 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KN-8423     TCGA-KN-8424     TCGA-KN-8426     TCGA-KN-8427 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KN-8428     TCGA-KN-8429     TCGA-KN-8430     TCGA-KN-8431 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KN-8432     TCGA-KN-8433     TCGA-KN-8434     TCGA-KN-8436 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KN-8437     TCGA-KO-8404     TCGA-KO-8405     TCGA-KO-8408 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KO-8409     TCGA-KO-8410     TCGA-KO-8413     TCGA-KO-8415 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KO-8416     TCGA-KO-8417     TCGA-KV-A6GD     TCGA-KV-A6GE 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KV-A74V     TCGA-MH-A854     TCGA-MH-A855     TCGA-MH-A856 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-MH-A857     TCGA-O9-A75Z     TCGA-P4-A5E6     TCGA-P4-A5E7 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-P4-A5E8     TCGA-P4-A5EA     TCGA-P4-AAVL     TCGA-P4-AAVM 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-PJ-A5Z8     TCGA-PJ-A5Z9     TCGA-Q2-A5QZ     TCGA-SX-A71R 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-SX-A71S     TCGA-SX-A71U     TCGA-SX-A71W     TCGA-SX-A7SL 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-SX-A7SM     TCGA-SX-A7SN     TCGA-SX-A7SO     TCGA-SX-A7SP 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-SX-A7SR     TCGA-SX-A7SS     TCGA-SX-A7SU     TCGA-UZ-A9PJ 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-UZ-A9PK     TCGA-UZ-A9PL     TCGA-UZ-A9PN     TCGA-UZ-A9PO 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-UZ-A9PP     TCGA-UZ-A9PR     TCGA-UZ-A9PU     TCGA-UZ-A9PV 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-UZ-A9PX     TCGA-UZ-A9PZ     TCGA-V9-A7HT     TCGA-WN-A9G9 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-WN-AB4C     TCGA-Y8-A897     TCGA-Y8-A898     TCGA-Y8-A8RY 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-Y8-A8RZ     TCGA-Y8-A8S0     TCGA-Y8-A8S1 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LHX1 MUTATED        1      0      0      0      0      1      0
  LHX1 WILD-TYPE     89     73     50     19     37     57     46
D61V12, multiclass
[1] "Remove cluster labels:" "LHX1 MUTATED"          
clus
  LHX1 MUTATED LHX1 WILD-TYPE 
             2            371 
    TCGA-2K-A9WE     TCGA-2Z-A9J1     TCGA-2Z-A9J2     TCGA-2Z-A9J3 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-2Z-A9J5     TCGA-2Z-A9J6     TCGA-2Z-A9JD     TCGA-2Z-A9JG 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-2Z-A9JI     TCGA-2Z-A9JJ     TCGA-2Z-A9JK     TCGA-2Z-A9JL 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-2Z-A9JM     TCGA-2Z-A9JN     TCGA-2Z-A9JO     TCGA-2Z-A9JP 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-2Z-A9JQ     TCGA-2Z-A9JR     TCGA-2Z-A9JT     TCGA-4A-A93W 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-4A-A93X     TCGA-4A-A93Y     TCGA-5P-A9JV     TCGA-5P-A9JW 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-5P-A9JY     TCGA-5P-A9JZ     TCGA-5P-A9K0     TCGA-5P-A9K6 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-5P-A9K8     TCGA-5P-A9KA     TCGA-5P-A9KC     TCGA-5P-A9KE 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A3-3317     TCGA-A3-3358     TCGA-A3-3387     TCGA-A4-7286 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A4-7287     TCGA-A4-7585     TCGA-A4-7734     TCGA-A4-7828 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A4-7915     TCGA-A4-7996     TCGA-A4-7997     TCGA-A4-8098 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A4-8310     TCGA-A4-8312     TCGA-A4-8515     TCGA-A4-8517 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A4-8518     TCGA-A4-8630     TCGA-A4-A57E     TCGA-A4-A5XZ 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-A4-A5Y0     TCGA-A4-A5Y1     TCGA-A4-A772     TCGA-AK-3440 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-AK-3458     TCGA-AK-3465     TCGA-AL-3466     TCGA-AL-3472 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-AL-3473     TCGA-AL-7173     TCGA-AT-A5NU     TCGA-B0-4700 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B0-4706     TCGA-B0-4710     TCGA-B0-4712     TCGA-B0-4810 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B0-4811     TCGA-B0-4836     TCGA-B0-4837     TCGA-B0-4852 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B0-5080     TCGA-B0-5085     TCGA-B0-5088     TCGA-B0-5399 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B0-5691     TCGA-B0-5692     TCGA-B0-5693     TCGA-B0-5694 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B0-5695     TCGA-B0-5696     TCGA-B0-5699     TCGA-B0-5702 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B0-5705     TCGA-B0-5709     TCGA-B1-5398     TCGA-B1-A47N 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B1-A47O     TCGA-B1-A654     TCGA-B1-A656     TCGA-B1-A657 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B2-3923     TCGA-B2-3924     TCGA-B2-5633     TCGA-B2-5635 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B3-3925     TCGA-B3-4104     TCGA-B3-8121     TCGA-B4-5377 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B4-5836     TCGA-B8-4621     TCGA-B8-5545     TCGA-B8-5550 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B8-5551     TCGA-B8-5552     TCGA-B8-5553     TCGA-B9-4115 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B9-4117     TCGA-B9-5155     TCGA-B9-5156     TCGA-B9-A44B 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-B9-A5W9     TCGA-B9-A69E     TCGA-B9-A8YH     TCGA-B9-A8YI 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-4173     TCGA-BP-4340     TCGA-BP-4761     TCGA-BP-4770 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-4787     TCGA-BP-4789     TCGA-BP-4790     TCGA-BP-4804 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-4807     TCGA-BP-4961     TCGA-BP-4967     TCGA-BP-4968 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-4970     TCGA-BP-4974     TCGA-BP-4976     TCGA-BP-4981 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-4982     TCGA-BP-4985     TCGA-BP-4988     TCGA-BP-4989 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-4992     TCGA-BP-4995     TCGA-BP-4998     TCGA-BP-5001 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BP-5008     TCGA-BP-5009     TCGA-BQ-5876     TCGA-BQ-5877 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-5878     TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-5882     TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5886 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889     TCGA-BQ-5890 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5893     TCGA-BQ-5894 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-CJ-4870 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CJ-4875     TCGA-CJ-4876     TCGA-CJ-4878     TCGA-CJ-4881 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CJ-4887     TCGA-CJ-4889     TCGA-CJ-4890     TCGA-CJ-4895 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CJ-4900     TCGA-CJ-5671     TCGA-CJ-5676     TCGA-CJ-5681 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CJ-5683     TCGA-CJ-5686     TCGA-CJ-6031     TCGA-CJ-6032 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CW-5585     TCGA-CW-5589     TCGA-CW-6087     TCGA-CZ-4854 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CZ-4857     TCGA-CZ-4858     TCGA-CZ-5453     TCGA-CZ-5454 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CZ-5455     TCGA-CZ-5457     TCGA-CZ-5459     TCGA-CZ-5462 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CZ-5463     TCGA-CZ-5466     TCGA-CZ-5467     TCGA-CZ-5469 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-CZ-5470     TCGA-CZ-5989     TCGA-DV-5565     TCGA-DV-5566 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-DV-5569     TCGA-DW-5560     TCGA-DW-5561     TCGA-DW-7834 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-DW-7836     TCGA-DW-7837     TCGA-DW-7838     TCGA-DW-7839 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-DW-7840     TCGA-DW-7842     TCGA-DZ-6131     TCGA-DZ-6132 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-DZ-6133     TCGA-DZ-6134     TCGA-DZ-6135     TCGA-EU-5904 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-EV-5901     TCGA-EV-5902     TCGA-EV-5903     TCGA-F9-A4JJ 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-F9-A7Q0     TCGA-F9-A8NY     TCGA-F9-A97G     TCGA-G7-6789 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-G7-6790     TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-G7-6796     TCGA-G7-7501     TCGA-G7-7502     TCGA-G7-A4TM 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-G7-A8LB     TCGA-G7-A8LC     TCGA-G7-A8LD     TCGA-G7-A8LE 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966     TCGA-GL-8500 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-GL-A4EM     TCGA-GL-A59T     TCGA-GL-A9DC     TCGA-GL-A9DD 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-GL-A9DE     TCGA-HE-7128     TCGA-HE-7130     TCGA-HE-A5NJ 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-HE-A5NL     TCGA-IA-A40U     TCGA-IA-A40X     TCGA-IA-A40Y 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-IA-A83S     TCGA-IA-A83T     TCGA-IA-A83V     TCGA-IA-A83W 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-IZ-8195     TCGA-IZ-8196     TCGA-IZ-A6M9     TCGA-J7-6720 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-J7-8537     TCGA-J7-A8I2     TCGA-KL-8323     TCGA-KL-8324 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KL-8327     TCGA-KL-8328     TCGA-KL-8331     TCGA-KL-8332 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KL-8333     TCGA-KL-8334     TCGA-KL-8335     TCGA-KL-8336 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KL-8338     TCGA-KL-8339     TCGA-KL-8340     TCGA-KL-8341 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KL-8342     TCGA-KL-8343     TCGA-KL-8344     TCGA-KL-8345 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KM-8438     TCGA-KM-8439     TCGA-KM-8441     TCGA-KM-8442 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KM-8639     TCGA-KN-8418     TCGA-KN-8419     TCGA-KN-8422 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KN-8423     TCGA-KN-8424     TCGA-KN-8426     TCGA-KN-8427 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KN-8428     TCGA-KN-8429     TCGA-KN-8430     TCGA-KN-8431 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KN-8432     TCGA-KN-8433     TCGA-KN-8434     TCGA-KN-8436 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KN-8437     TCGA-KO-8404     TCGA-KO-8405     TCGA-KO-8408 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KO-8409     TCGA-KO-8410     TCGA-KO-8413     TCGA-KO-8415 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KO-8416     TCGA-KO-8417     TCGA-KV-A6GD     TCGA-KV-A6GE 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-KV-A74V     TCGA-MH-A854     TCGA-MH-A855     TCGA-MH-A856 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-MH-A857     TCGA-O9-A75Z     TCGA-P4-A5E6     TCGA-P4-A5E7 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-P4-A5E8     TCGA-P4-A5EA     TCGA-P4-AAVL     TCGA-P4-AAVM 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-PJ-A5Z8     TCGA-PJ-A5Z9     TCGA-Q2-A5QZ     TCGA-SX-A71R 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-SX-A71S     TCGA-SX-A71U     TCGA-SX-A71W     TCGA-SX-A7SL 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-SX-A7SM     TCGA-SX-A7SN     TCGA-SX-A7SO     TCGA-SX-A7SP 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-SX-A7SR     TCGA-SX-A7SS     TCGA-SX-A7SU     TCGA-UZ-A9PJ 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-UZ-A9PK     TCGA-UZ-A9PL     TCGA-UZ-A9PN     TCGA-UZ-A9PO 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-UZ-A9PP     TCGA-UZ-A9PR     TCGA-UZ-A9PU     TCGA-UZ-A9PV 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-UZ-A9PX     TCGA-UZ-A9PZ     TCGA-V9-A7HT     TCGA-WN-A9G9 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-WN-AB4C     TCGA-Y8-A897     TCGA-Y8-A898     TCGA-Y8-A8RY 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 
    TCGA-Y8-A8RZ     TCGA-Y8-A8S0     TCGA-Y8-A8S1 
"LHX1 WILD-TYPE" "LHX1 WILD-TYPE" "LHX1 WILD-TYPE" 

Clustering(62) Variable = SCARB2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARB2 MUTATED        0      0      0      0
  SCARB2 WILD-TYPE     17     16     10     15
D62V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCARB2 MUTATED        0      0      0      0      0
  SCARB2 WILD-TYPE      7     16     16     10      9
D62V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCARB2 MUTATED        0      1      3
  SCARB2 WILD-TYPE    313    167    295
D62V3, multiclass
        clus
vv       SCARB2 MUTATED SCARB2 WILD-TYPE
  CLUS_1              0              313
  CLUS_2              1              167
  CLUS_3              3              295
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCARB2 MUTATED        0      0      2      1      0
  SCARB2 WILD-TYPE     95    111    140     62    185
D62V4, multiclass
        clus
vv       SCARB2 MUTATED SCARB2 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              0              111
  CLUS_3              2              140
  CLUS_4              1               62
  CLUS_5              0              185
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARB2 MUTATED        0      0      0      4
  SCARB2 WILD-TYPE    163    161    170    171
D62V5, multiclass
        clus
vv       SCARB2 MUTATED SCARB2 WILD-TYPE
  CLUS_1              0              163
  CLUS_2              0              161
  CLUS_3              0              170
  CLUS_4              4              171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCARB2 MUTATED        1      0      1      1      1      0      0
  SCARB2 WILD-TYPE    177     62    104    128     51     61     82
D62V6, multiclass
        clus
vv       SCARB2 MUTATED SCARB2 WILD-TYPE
  CLUS_1              1              177
  CLUS_2              0               62
  CLUS_3              1              104
  CLUS_4              1              128
  CLUS_5              1               51
  CLUS_6              0               61
  CLUS_7              0               82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARB2 MUTATED        0      2      2      0
  SCARB2 WILD-TYPE    107    177    231    262
D62V7, multiclass
        clus
vv       SCARB2 MUTATED SCARB2 WILD-TYPE
  CLUS_1              0              107
  CLUS_2              2              177
  CLUS_3              2              231
  CLUS_4              0              262
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SCARB2 MUTATED        0      0      2      0      1      0      1      0
  SCARB2 WILD-TYPE     84     50    120     77    106     32     89     52
                  vv
clus               CLUS_9
  SCARB2 MUTATED        0
  SCARB2 WILD-TYPE    167
D62V8, multiclass
        clus
vv       SCARB2 MUTATED SCARB2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               50
  CLUS_3              2              120
  CLUS_4              0               77
  CLUS_5              1              106
  CLUS_6              0               32
  CLUS_7              1               89
  CLUS_8              0               52
  CLUS_9              0              167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCARB2 MUTATED        0      0      4
  SCARB2 WILD-TYPE    329    164    278
D62V9, multiclass
        clus
vv       SCARB2 MUTATED SCARB2 WILD-TYPE
  CLUS_1              0              329
  CLUS_2              0              164
  CLUS_3              4              278
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARB2 MUTATED        0      2      2      0
  SCARB2 WILD-TYPE     73    298    196    204
D62V10, multiclass
        clus
vv       SCARB2 MUTATED SCARB2 WILD-TYPE
  CLUS_1              0               73
  CLUS_2              2              298
  CLUS_3              2              196
  CLUS_4              0              204
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARB2 MUTATED        0      0      0      0
  SCARB2 WILD-TYPE    155     66     56     96
D62V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCARB2 MUTATED        0      0      0      0      0      0      0
  SCARB2 WILD-TYPE     90     73     50     19     37     58     46
D62V12, multiclass

Clustering(63) Variable = C1ORF25 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF25 MUTATED        0      0      0      0
  C1ORF25 WILD-TYPE     17     16     10     15
D63V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF25 MUTATED        0      0      0      0      0
  C1ORF25 WILD-TYPE      7     16     16     10      9
D63V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF25 MUTATED        3      2      1
  C1ORF25 WILD-TYPE    310    166    297
D63V3, multiclass
        clus
vv       C1ORF25 MUTATED C1ORF25 WILD-TYPE
  CLUS_1               3               310
  CLUS_2               2               166
  CLUS_3               1               297
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF25 MUTATED        0      1      3      1      1
  C1ORF25 WILD-TYPE     95    110    139     62    184
D63V4, multiclass
        clus
vv       C1ORF25 MUTATED C1ORF25 WILD-TYPE
  CLUS_1               0                95
  CLUS_2               1               110
  CLUS_3               3               139
  CLUS_4               1                62
  CLUS_5               1               184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF25 MUTATED        2      1      0      3
  C1ORF25 WILD-TYPE    161    160    170    172
D63V5, multiclass
        clus
vv       C1ORF25 MUTATED C1ORF25 WILD-TYPE
  CLUS_1               2               161
  CLUS_2               1               160
  CLUS_3               0               170
  CLUS_4               3               172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C1ORF25 MUTATED        2      0      1      2      0      1      0
  C1ORF25 WILD-TYPE    176     62    104    127     52     60     82
D63V6, multiclass
        clus
vv       C1ORF25 MUTATED C1ORF25 WILD-TYPE
  CLUS_1               2               176
  CLUS_2               0                62
  CLUS_3               1               104
  CLUS_4               2               127
  CLUS_5               0                52
  CLUS_6               1                60
  CLUS_7               0                82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF25 MUTATED        0      1      3      2
  C1ORF25 WILD-TYPE    107    178    230    260
D63V7, multiclass
        clus
vv       C1ORF25 MUTATED C1ORF25 WILD-TYPE
  CLUS_1               0               107
  CLUS_2               1               178
  CLUS_3               3               230
  CLUS_4               2               260
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C1ORF25 MUTATED        0      1      1      2      0      0      2      0
  C1ORF25 WILD-TYPE     84     49    121     75    107     32     88     52
                   vv
clus                CLUS_9
  C1ORF25 MUTATED        0
  C1ORF25 WILD-TYPE    167
D63V8, multiclass
        clus
vv       C1ORF25 MUTATED C1ORF25 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                49
  CLUS_3               1               121
  CLUS_4               2                75
  CLUS_5               0               107
  CLUS_6               0                32
  CLUS_7               2                88
  CLUS_8               0                52
  CLUS_9               0               167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF25 MUTATED        2      1      3
  C1ORF25 WILD-TYPE    327    163    279
D63V9, multiclass
        clus
vv       C1ORF25 MUTATED C1ORF25 WILD-TYPE
  CLUS_1               2               327
  CLUS_2               1               163
  CLUS_3               3               279
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF25 MUTATED        0      2      3      1
  C1ORF25 WILD-TYPE     73    298    195    203
D63V10, multiclass
        clus
vv       C1ORF25 MUTATED C1ORF25 WILD-TYPE
  CLUS_1               0                73
  CLUS_2               2               298
  CLUS_3               3               195
  CLUS_4               1               203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF25 MUTATED        1      0      1      2
  C1ORF25 WILD-TYPE    154     66     55     94
D63V11, multiclass
        clus
vv       C1ORF25 MUTATED C1ORF25 WILD-TYPE
  CLUS_1               1               154
  CLUS_2               0                66
  CLUS_3               1                55
  CLUS_4               2                94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C1ORF25 MUTATED        0      1      0      0      1      2      0
  C1ORF25 WILD-TYPE     90     72     50     19     36     56     46
D63V12, multiclass
        clus
vv       C1ORF25 MUTATED C1ORF25 WILD-TYPE
  CLUS_1               0                90
  CLUS_2               1                72
  CLUS_3               0                50
  CLUS_4               0                19
  CLUS_5               1                36
  CLUS_6               2                56
  CLUS_7               0                46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = KDELR3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDELR3 MUTATED        0      0      0      0
  KDELR3 WILD-TYPE     17     16     10     15
D64V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDELR3 MUTATED        0      0      0      0      0
  KDELR3 WILD-TYPE      7     16     16     10      9
D64V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KDELR3 MUTATED        5      0      2
  KDELR3 WILD-TYPE    308    168    296
D64V3, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              5              308
  CLUS_2              0              168
  CLUS_3              2              296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDELR3 MUTATED        2      3      0      0      2
  KDELR3 WILD-TYPE     93    108    142     63    183
D64V4, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              3              108
  CLUS_3              0              142
  CLUS_4              0               63
  CLUS_5              2              183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDELR3 MUTATED        2      1      0      4
  KDELR3 WILD-TYPE    161    160    170    171
D64V5, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              2              161
  CLUS_2              1              160
  CLUS_3              0              170
  CLUS_4              4              171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDELR3 MUTATED        3      0      2      0      0      0      2
  KDELR3 WILD-TYPE    175     62    103    129     52     61     80
D64V6, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              0               62
  CLUS_3              2              103
  CLUS_4              0              129
  CLUS_5              0               52
  CLUS_6              0               61
  CLUS_7              2               80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDELR3 MUTATED        2      3      0      2
  KDELR3 WILD-TYPE    105    176    233    260
D64V7, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              2              105
  CLUS_2              3              176
  CLUS_3              0              233
  CLUS_4              2              260
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KDELR3 MUTATED        1      2      0      0      2      0      0      0
  KDELR3 WILD-TYPE     83     48    122     77    105     32     90     52
                  vv
clus               CLUS_9
  KDELR3 MUTATED        2
  KDELR3 WILD-TYPE    165
D64V8, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               48
  CLUS_3              0              122
  CLUS_4              0               77
  CLUS_5              2              105
  CLUS_6              0               32
  CLUS_7              0               90
  CLUS_8              0               52
  CLUS_9              2              165
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KDELR3 MUTATED        3      3      1
  KDELR3 WILD-TYPE    326    161    281
D64V9, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              3              326
  CLUS_2              3              161
  CLUS_3              1              281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDELR3 MUTATED        1      4      0      2
  KDELR3 WILD-TYPE     72    296    198    202
D64V10, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              4              296
  CLUS_3              0              198
  CLUS_4              2              202
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDELR3 MUTATED        2      1      2      0
  KDELR3 WILD-TYPE    153     65     54     96
D64V11, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              2              153
  CLUS_2              1               65
  CLUS_3              2               54
  CLUS_4              0               96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDELR3 MUTATED        2      1      0      0      1      0      1
  KDELR3 WILD-TYPE     88     72     50     19     36     58     45
D64V12, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              2               88
  CLUS_2              1               72
  CLUS_3              0               50
  CLUS_4              0               19
  CLUS_5              1               36
  CLUS_6              0               58
  CLUS_7              1               45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = TTLL6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTLL6 MUTATED        0      0      0      0
  TTLL6 WILD-TYPE     17     16     10     15
D65V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTLL6 MUTATED        0      0      0      0      0
  TTLL6 WILD-TYPE      7     16     16     10      9
D65V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTLL6 MUTATED        2      2      0
  TTLL6 WILD-TYPE    311    166    298
D65V3, multiclass
        clus
vv       TTLL6 MUTATED TTLL6 WILD-TYPE
  CLUS_1             2             311
  CLUS_2             2             166
  CLUS_3             0             298
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTLL6 MUTATED        2      0      2      0      0
  TTLL6 WILD-TYPE     93    111    140     63    185
D65V4, multiclass
        clus
vv       TTLL6 MUTATED TTLL6 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0             111
  CLUS_3             2             140
  CLUS_4             0              63
  CLUS_5             0             185
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTLL6 MUTATED        0      2      1      1
  TTLL6 WILD-TYPE    163    159    169    174
D65V5, multiclass
        clus
vv       TTLL6 MUTATED TTLL6 WILD-TYPE
  CLUS_1             0             163
  CLUS_2             2             159
  CLUS_3             1             169
  CLUS_4             1             174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TTLL6 MUTATED        3      0      0      0      0      1      0
  TTLL6 WILD-TYPE    175     62    105    129     52     60     82
D65V6, multiclass
        clus
vv       TTLL6 MUTATED TTLL6 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             0              62
  CLUS_3             0             105
  CLUS_4             0             129
  CLUS_5             0              52
  CLUS_6             1              60
  CLUS_7             0              82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTLL6 MUTATED        2      0      2      0
  TTLL6 WILD-TYPE    105    179    231    262
D65V7, multiclass
        clus
vv       TTLL6 MUTATED TTLL6 WILD-TYPE
  CLUS_1             2             105
  CLUS_2             0             179
  CLUS_3             2             231
  CLUS_4             0             262
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TTLL6 MUTATED        2      0      1      0      0      0      1      0
  TTLL6 WILD-TYPE     82     50    121     77    107     32     89     52
                 vv
clus              CLUS_9
  TTLL6 MUTATED        0
  TTLL6 WILD-TYPE    167
D65V8, multiclass
        clus
vv       TTLL6 MUTATED TTLL6 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             0              50
  CLUS_3             1             121
  CLUS_4             0              77
  CLUS_5             0             107
  CLUS_6             0              32
  CLUS_7             1              89
  CLUS_8             0              52
  CLUS_9             0             167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTLL6 MUTATED        2      0      2
  TTLL6 WILD-TYPE    327    164    280
D65V9, multiclass
        clus
vv       TTLL6 MUTATED TTLL6 WILD-TYPE
  CLUS_1             2             327
  CLUS_2             0             164
  CLUS_3             2             280
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTLL6 MUTATED        2      1      1      0
  TTLL6 WILD-TYPE     71    299    197    204
D65V10, multiclass
        clus
vv       TTLL6 MUTATED TTLL6 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             1             299
  CLUS_3             1             197
  CLUS_4             0             204
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTLL6 MUTATED        0      1      0      1
  TTLL6 WILD-TYPE    155     65     56     95
D65V11, multiclass
[1] "Remove cluster labels:" "TTLL6 MUTATED"         
clus
  TTLL6 MUTATED TTLL6 WILD-TYPE 
              2             371 
     TCGA-2K-A9WE      TCGA-2Z-A9J1      TCGA-2Z-A9J2      TCGA-2Z-A9J3 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-2Z-A9J5      TCGA-2Z-A9J6      TCGA-2Z-A9JD      TCGA-2Z-A9JG 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-2Z-A9JI      TCGA-2Z-A9JJ      TCGA-2Z-A9JK      TCGA-2Z-A9JL 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-2Z-A9JM      TCGA-2Z-A9JN      TCGA-2Z-A9JO      TCGA-2Z-A9JP 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-2Z-A9JQ      TCGA-2Z-A9JR      TCGA-2Z-A9JT      TCGA-4A-A93W 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-4A-A93X      TCGA-4A-A93Y      TCGA-5P-A9JV      TCGA-5P-A9JW 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-5P-A9JY      TCGA-5P-A9JZ      TCGA-5P-A9K0      TCGA-5P-A9K6 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-5P-A9K8      TCGA-5P-A9KA      TCGA-5P-A9KC      TCGA-5P-A9KE 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-A4-A772 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B0-4700      TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B0-4852      TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B0-5399      TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B0-5694      TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B0-5702      TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B1-A47N      TCGA-B1-A47O      TCGA-B1-A654      TCGA-B1-A656 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-5633 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104      TCGA-B3-8121 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621      TCGA-B8-5545 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552      TCGA-B8-5553 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5155      TCGA-B9-5156 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-B9-A8YH 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B9-A8YI      TCGA-BP-4173      TCGA-BP-4340      TCGA-BP-4761 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BP-4770      TCGA-BP-4787      TCGA-BP-4789      TCGA-BP-4790 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BP-4804      TCGA-BP-4807      TCGA-BP-4961      TCGA-BP-4967 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BP-4968      TCGA-BP-4970      TCGA-BP-4974      TCGA-BP-4976 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BP-4981      TCGA-BP-4982      TCGA-BP-4985      TCGA-BP-4988 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BP-4989      TCGA-BP-4992      TCGA-BP-4995      TCGA-BP-4998 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BP-5001      TCGA-BP-5008      TCGA-BP-5009      TCGA-BQ-5876 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-5877      TCGA-BQ-5878      TCGA-BQ-5879      TCGA-BQ-5880 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-5881      TCGA-BQ-5882      TCGA-BQ-5883      TCGA-BQ-5884 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-5886      TCGA-BQ-5887      TCGA-BQ-5888      TCGA-BQ-5889 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-5890      TCGA-BQ-5891      TCGA-BQ-5892      TCGA-BQ-5893 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-5894      TCGA-BQ-7044      TCGA-BQ-7045      TCGA-BQ-7046 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-7048      TCGA-BQ-7049      TCGA-BQ-7050      TCGA-BQ-7051 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7056      TCGA-BQ-7058 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DW-5560      TCGA-DW-5561 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-DW-7834      TCGA-DW-7836      TCGA-DW-7837      TCGA-DW-7838 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-F9-A4JJ      TCGA-F9-A7Q0      TCGA-F9-A8NY      TCGA-F9-A97G 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792      TCGA-G7-6793 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501      TCGA-G7-7502 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-G7-A4TM      TCGA-G7-A8LB      TCGA-G7-A8LC      TCGA-G7-A8LD 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-G7-A8LE      TCGA-GL-6846      TCGA-GL-7773      TCGA-GL-7966 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T      TCGA-GL-A9DC 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-GL-A9DD      TCGA-GL-A9DE      TCGA-HE-7128      TCGA-HE-7130 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-HE-A5NJ      TCGA-HE-A5NL      TCGA-IA-A40U      TCGA-IA-A40X 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-IA-A40Y      TCGA-IA-A83S      TCGA-IA-A83T      TCGA-IA-A83V 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-IA-A83W      TCGA-IZ-8195      TCGA-IZ-8196      TCGA-IZ-A6M9 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-J7-6720      TCGA-J7-8537      TCGA-J7-A8I2      TCGA-KL-8323 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KN-8436      TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KO-8408      TCGA-KO-8410      TCGA-KO-8413      TCGA-KO-8415 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD      TCGA-KV-A6GE 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KV-A74V      TCGA-MH-A854      TCGA-MH-A855      TCGA-MH-A856 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-MH-A857      TCGA-O9-A75Z      TCGA-P4-A5E6      TCGA-P4-A5E7 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-P4-A5E8      TCGA-P4-A5EA      TCGA-P4-AAVL      TCGA-P4-AAVM 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ      TCGA-SX-A71R 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-SX-A71S      TCGA-SX-A71U      TCGA-SX-A71W      TCGA-SX-A7SL 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-SX-A7SM      TCGA-SX-A7SN      TCGA-SX-A7SO      TCGA-SX-A7SP 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-SX-A7SR      TCGA-SX-A7SS      TCGA-SX-A7SU      TCGA-UZ-A9PJ 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-UZ-A9PK      TCGA-UZ-A9PL      TCGA-UZ-A9PN      TCGA-UZ-A9PO 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-UZ-A9PP      TCGA-UZ-A9PR      TCGA-UZ-A9PU      TCGA-UZ-A9PV 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-UZ-A9PX      TCGA-UZ-A9PZ      TCGA-V9-A7HT      TCGA-WN-A9G9 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-WN-AB4C      TCGA-Y8-A897      TCGA-Y8-A898      TCGA-Y8-A8RY 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-Y8-A8RZ      TCGA-Y8-A8S0      TCGA-Y8-A8S1 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TTLL6 MUTATED        0      0      0      0      0      1      1
  TTLL6 WILD-TYPE     90     73     50     19     37     57     45
D65V12, multiclass
[1] "Remove cluster labels:" "TTLL6 MUTATED"         
clus
  TTLL6 MUTATED TTLL6 WILD-TYPE 
              2             371 
     TCGA-2K-A9WE      TCGA-2Z-A9J1      TCGA-2Z-A9J2      TCGA-2Z-A9J3 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-2Z-A9J5      TCGA-2Z-A9J6      TCGA-2Z-A9JD      TCGA-2Z-A9JG 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-2Z-A9JI      TCGA-2Z-A9JJ      TCGA-2Z-A9JK      TCGA-2Z-A9JL 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-2Z-A9JM      TCGA-2Z-A9JN      TCGA-2Z-A9JO      TCGA-2Z-A9JP 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-2Z-A9JQ      TCGA-2Z-A9JR      TCGA-2Z-A9JT      TCGA-4A-A93W 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-4A-A93X      TCGA-4A-A93Y      TCGA-5P-A9JV      TCGA-5P-A9JW 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-5P-A9JY      TCGA-5P-A9JZ      TCGA-5P-A9K0      TCGA-5P-A9K6 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-5P-A9K8      TCGA-5P-A9KA      TCGA-5P-A9KC      TCGA-5P-A9KE 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-A4-A772 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B0-4700      TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B0-4852      TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B0-5399      TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B0-5694      TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B0-5702      TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B1-A47N      TCGA-B1-A47O      TCGA-B1-A654      TCGA-B1-A656 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-5633 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104      TCGA-B3-8121 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621      TCGA-B8-5545 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552      TCGA-B8-5553 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5155      TCGA-B9-5156 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-B9-A8YH 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-B9-A8YI      TCGA-BP-4173      TCGA-BP-4340      TCGA-BP-4761 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BP-4770      TCGA-BP-4787      TCGA-BP-4789      TCGA-BP-4790 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BP-4804      TCGA-BP-4807      TCGA-BP-4961      TCGA-BP-4967 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BP-4968      TCGA-BP-4970      TCGA-BP-4974      TCGA-BP-4976 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BP-4981      TCGA-BP-4982      TCGA-BP-4985      TCGA-BP-4988 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BP-4989      TCGA-BP-4992      TCGA-BP-4995      TCGA-BP-4998 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BP-5001      TCGA-BP-5008      TCGA-BP-5009      TCGA-BQ-5876 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-5877      TCGA-BQ-5878      TCGA-BQ-5879      TCGA-BQ-5880 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-5881      TCGA-BQ-5882      TCGA-BQ-5883      TCGA-BQ-5884 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-5886      TCGA-BQ-5887      TCGA-BQ-5888      TCGA-BQ-5889 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-5890      TCGA-BQ-5891      TCGA-BQ-5892      TCGA-BQ-5893 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-5894      TCGA-BQ-7044      TCGA-BQ-7045      TCGA-BQ-7046 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-7048      TCGA-BQ-7049      TCGA-BQ-7050      TCGA-BQ-7051 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7056      TCGA-BQ-7058 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DW-5560      TCGA-DW-5561 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-DW-7834      TCGA-DW-7836      TCGA-DW-7837      TCGA-DW-7838 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842      TCGA-DZ-6131 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-F9-A4JJ      TCGA-F9-A7Q0      TCGA-F9-A8NY      TCGA-F9-A97G 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792      TCGA-G7-6793 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501      TCGA-G7-7502 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-G7-A4TM      TCGA-G7-A8LB      TCGA-G7-A8LC      TCGA-G7-A8LD 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-G7-A8LE      TCGA-GL-6846      TCGA-GL-7773      TCGA-GL-7966 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T      TCGA-GL-A9DC 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-GL-A9DD      TCGA-GL-A9DE      TCGA-HE-7128      TCGA-HE-7130 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-HE-A5NJ      TCGA-HE-A5NL      TCGA-IA-A40U      TCGA-IA-A40X 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-IA-A40Y      TCGA-IA-A83S      TCGA-IA-A83T      TCGA-IA-A83V 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-IA-A83W      TCGA-IZ-8195      TCGA-IZ-8196      TCGA-IZ-A6M9 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-J7-6720      TCGA-J7-8537      TCGA-J7-A8I2      TCGA-KL-8323 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328      TCGA-KL-8331 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439      TCGA-KM-8441 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8426 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429      TCGA-KN-8430 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433      TCGA-KN-8434 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KN-8436      TCGA-KN-8437      TCGA-KO-8404      TCGA-KO-8405 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KO-8408      TCGA-KO-8410      TCGA-KO-8413      TCGA-KO-8415 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD      TCGA-KV-A6GE 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-KV-A74V      TCGA-MH-A854      TCGA-MH-A855      TCGA-MH-A856 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-MH-A857      TCGA-O9-A75Z      TCGA-P4-A5E6      TCGA-P4-A5E7 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-P4-A5E8      TCGA-P4-A5EA      TCGA-P4-AAVL      TCGA-P4-AAVM 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ      TCGA-SX-A71R 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-SX-A71S      TCGA-SX-A71U      TCGA-SX-A71W      TCGA-SX-A7SL 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-SX-A7SM      TCGA-SX-A7SN      TCGA-SX-A7SO      TCGA-SX-A7SP 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-SX-A7SR      TCGA-SX-A7SS      TCGA-SX-A7SU      TCGA-UZ-A9PJ 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-UZ-A9PK      TCGA-UZ-A9PL      TCGA-UZ-A9PN      TCGA-UZ-A9PO 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-UZ-A9PP      TCGA-UZ-A9PR      TCGA-UZ-A9PU      TCGA-UZ-A9PV 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-UZ-A9PX      TCGA-UZ-A9PZ      TCGA-V9-A7HT      TCGA-WN-A9G9 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-WN-AB4C      TCGA-Y8-A897      TCGA-Y8-A898      TCGA-Y8-A8RY 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 
     TCGA-Y8-A8RZ      TCGA-Y8-A8S0      TCGA-Y8-A8S1 
"TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" "TTLL6 WILD-TYPE" 

Clustering(66) Variable = STXBP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STXBP3 MUTATED        0      0      0      0
  STXBP3 WILD-TYPE     17     16     10     15
D66V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STXBP3 MUTATED        0      0      0      0      0
  STXBP3 WILD-TYPE      7     16     16     10      9
D66V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STXBP3 MUTATED        3      0      2
  STXBP3 WILD-TYPE    310    168    296
D66V3, multiclass
        clus
vv       STXBP3 MUTATED STXBP3 WILD-TYPE
  CLUS_1              3              310
  CLUS_2              0              168
  CLUS_3              2              296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STXBP3 MUTATED        0      0      2      0      3
  STXBP3 WILD-TYPE     95    111    140     63    182
D66V4, multiclass
        clus
vv       STXBP3 MUTATED STXBP3 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              0              111
  CLUS_3              2              140
  CLUS_4              0               63
  CLUS_5              3              182
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STXBP3 MUTATED        0      1      0      1
  STXBP3 WILD-TYPE    163    160    170    174
D66V5, multiclass
[1] "Remove cluster labels:" "STXBP3 MUTATED"        
clus
  STXBP3 MUTATED STXBP3 WILD-TYPE 
               2              667 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J3       TCGA-2Z-A9J5 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-2Z-A9J6       TCGA-2Z-A9J7       TCGA-2Z-A9J8       TCGA-2Z-A9JD 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-2Z-A9JE       TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JL 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-2Z-A9JO       TCGA-2Z-A9JP       TCGA-2Z-A9JQ       TCGA-2Z-A9JT 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-4A-A93W       TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JU 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9KE       TCGA-A3-3311       TCGA-A3-3313 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A3-3317       TCGA-A3-3322       TCGA-A3-3323       TCGA-A3-3326 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A3-3331       TCGA-A3-3347       TCGA-A3-3349       TCGA-A3-3357 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A3-3362       TCGA-A3-3367       TCGA-A3-3370       TCGA-A3-3373 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3376       TCGA-A3-3385       TCGA-A3-3387 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-7288       TCGA-A4-7583       TCGA-A4-7584       TCGA-A4-7585 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-7734       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8311       TCGA-A4-8517       TCGA-A4-8630 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-A57E       TCGA-AK-3427       TCGA-AK-3428       TCGA-AK-3434 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-AK-3436       TCGA-AK-3451       TCGA-AK-3456       TCGA-AL-3472 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AL-A5DJ       TCGA-B0-4690 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4691       TCGA-B0-4693       TCGA-B0-4694       TCGA-B0-4697 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4700       TCGA-B0-4703       TCGA-B0-4706       TCGA-B0-4707 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4713       TCGA-B0-4714 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4718       TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4813 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4814       TCGA-B0-4815       TCGA-B0-4816       TCGA-B0-4817 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4818       TCGA-B0-4819       TCGA-B0-4822       TCGA-B0-4823 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4824       TCGA-B0-4827       TCGA-B0-4828       TCGA-B0-4833 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4838       TCGA-B0-4839 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4842       TCGA-B0-4843       TCGA-B0-4844       TCGA-B0-4845 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4846       TCGA-B0-4847       TCGA-B0-4848       TCGA-B0-4849 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4852       TCGA-B0-4945       TCGA-B0-5075       TCGA-B0-5077 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5081       TCGA-B0-5084       TCGA-B0-5085 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5088       TCGA-B0-5092       TCGA-B0-5094       TCGA-B0-5095 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5096       TCGA-B0-5097       TCGA-B0-5098       TCGA-B0-5099 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5100       TCGA-B0-5102       TCGA-B0-5104       TCGA-B0-5106 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5107       TCGA-B0-5108       TCGA-B0-5109       TCGA-B0-5110 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5113       TCGA-B0-5115       TCGA-B0-5116       TCGA-B0-5117 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5119       TCGA-B0-5120       TCGA-B0-5121       TCGA-B0-5399 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5400       TCGA-B0-5402       TCGA-B0-5691       TCGA-B0-5692 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5693       TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5697       TCGA-B0-5698       TCGA-B0-5699       TCGA-B0-5701 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5703       TCGA-B0-5705       TCGA-B0-5706 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5707       TCGA-B0-5709       TCGA-B0-5710       TCGA-B0-5711 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5712       TCGA-B0-5713       TCGA-B0-5812       TCGA-B1-5398 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B1-7332       TCGA-B1-A47M       TCGA-B1-A47N       TCGA-B1-A47O 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B2-4098       TCGA-B2-4099       TCGA-B2-4101       TCGA-B2-5633 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B2-5635       TCGA-B2-5641       TCGA-B3-8121       TCGA-B3-A6W5 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5832       TCGA-B4-5834       TCGA-B4-5835 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B4-5836       TCGA-B4-5838       TCGA-B4-5843       TCGA-B4-5844 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4146       TCGA-B8-4153       TCGA-B8-4620 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-4622       TCGA-B8-5158       TCGA-B8-5159 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B8-5162       TCGA-B8-5163       TCGA-B8-5164       TCGA-B8-5165 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B8-5545       TCGA-B8-5546       TCGA-B8-5549       TCGA-B8-5550 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-5155 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-A44B       TCGA-B9-A5W7       TCGA-B9-A5W8 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH       TCGA-B9-A8YI 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4158       TCGA-BP-4161       TCGA-BP-4164       TCGA-BP-4165 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4169       TCGA-BP-4170       TCGA-BP-4173       TCGA-BP-4174 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4326       TCGA-BP-4329       TCGA-BP-4330       TCGA-BP-4331 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4337       TCGA-BP-4338       TCGA-BP-4341       TCGA-BP-4342 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4343       TCGA-BP-4345       TCGA-BP-4346       TCGA-BP-4347 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4349       TCGA-BP-4351       TCGA-BP-4352       TCGA-BP-4354 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4355       TCGA-BP-4756       TCGA-BP-4758       TCGA-BP-4759 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4760       TCGA-BP-4761       TCGA-BP-4762       TCGA-BP-4763 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4765       TCGA-BP-4766       TCGA-BP-4768       TCGA-BP-4770 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4771       TCGA-BP-4774       TCGA-BP-4775       TCGA-BP-4777 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4781       TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4797       TCGA-BP-4798       TCGA-BP-4799       TCGA-BP-4801 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4803       TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4960 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4961       TCGA-BP-4962       TCGA-BP-4963       TCGA-BP-4964 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4965       TCGA-BP-4967       TCGA-BP-4968       TCGA-BP-4970 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4971       TCGA-BP-4972       TCGA-BP-4973       TCGA-BP-4974 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4975       TCGA-BP-4976       TCGA-BP-4977       TCGA-BP-4981 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4983       TCGA-BP-4985       TCGA-BP-4986 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4987       TCGA-BP-4988       TCGA-BP-4989       TCGA-BP-4991 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4993       TCGA-BP-4994       TCGA-BP-4995 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4998       TCGA-BP-4999       TCGA-BP-5000       TCGA-BP-5001 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5004       TCGA-BP-5006       TCGA-BP-5007       TCGA-BP-5008 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5009       TCGA-BP-5010       TCGA-BP-5168       TCGA-BP-5169 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5170       TCGA-BP-5173       TCGA-BP-5174       TCGA-BP-5175 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5176       TCGA-BP-5177       TCGA-BP-5178       TCGA-BP-5180 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5181       TCGA-BP-5182       TCGA-BP-5183       TCGA-BP-5184 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5185       TCGA-BP-5186       TCGA-BP-5187       TCGA-BP-5189 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5190       TCGA-BP-5191       TCGA-BP-5192       TCGA-BP-5194 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5195       TCGA-BP-5196       TCGA-BP-5198       TCGA-BP-5199 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5200       TCGA-BP-5201       TCGA-BP-5202       TCGA-BQ-5875 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5885 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7049 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7056       TCGA-BQ-7058       TCGA-BQ-7059       TCGA-BQ-7060 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7061       TCGA-BQ-7062       TCGA-CJ-4634       TCGA-CJ-4635 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4638       TCGA-CJ-4640       TCGA-CJ-4868       TCGA-CJ-4869 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4871       TCGA-CJ-4872       TCGA-CJ-4873 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4874       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4882       TCGA-CJ-4884       TCGA-CJ-4885 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4886       TCGA-CJ-4887       TCGA-CJ-4888       TCGA-CJ-4889 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4890       TCGA-CJ-4891       TCGA-CJ-4892       TCGA-CJ-4893 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4894       TCGA-CJ-4895       TCGA-CJ-4897       TCGA-CJ-4899 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4900       TCGA-CJ-4901       TCGA-CJ-4902       TCGA-CJ-4903 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4904       TCGA-CJ-4905       TCGA-CJ-4907       TCGA-CJ-4908 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4912       TCGA-CJ-4913       TCGA-CJ-4916       TCGA-CJ-4918 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4920       TCGA-CJ-4923       TCGA-CJ-5671       TCGA-CJ-5672 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5677       TCGA-CJ-5678 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-5679       TCGA-CJ-5680       TCGA-CJ-5681       TCGA-CJ-5682 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-5683       TCGA-CJ-5684       TCGA-CJ-5686       TCGA-CJ-6027 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-6028       TCGA-CJ-6030       TCGA-CJ-6031       TCGA-CJ-6032 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-6033       TCGA-CW-5580       TCGA-CW-5581       TCGA-CW-5583 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CW-5585       TCGA-CW-5588       TCGA-CW-5589       TCGA-CW-5591 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CW-6087       TCGA-CW-6090       TCGA-CW-6093       TCGA-CW-6097 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-4853       TCGA-CZ-4854       TCGA-CZ-4856       TCGA-CZ-4857 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-4858       TCGA-CZ-4859       TCGA-CZ-4861       TCGA-CZ-4862 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-4863       TCGA-CZ-4865       TCGA-CZ-4866       TCGA-CZ-5451 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5452       TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5456       TCGA-CZ-5457       TCGA-CZ-5458       TCGA-CZ-5459 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5460       TCGA-CZ-5461       TCGA-CZ-5462       TCGA-CZ-5463 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5465       TCGA-CZ-5466       TCGA-CZ-5467       TCGA-CZ-5468 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5982       TCGA-CZ-5984 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5985       TCGA-CZ-5986       TCGA-CZ-5987       TCGA-CZ-5988 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5989       TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5568 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DV-5569       TCGA-DV-5574       TCGA-DV-5575       TCGA-DV-5576 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DW-5560       TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7841 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DW-7842       TCGA-DW-7963       TCGA-DZ-6131       TCGA-DZ-6132 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EU-5904 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-EU-5905       TCGA-EU-5906       TCGA-EU-5907       TCGA-EV-5901 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-F9-A7Q0 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-F9-A7VF       TCGA-F9-A8NY       TCGA-F9-A97G       TCGA-G7-6789 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793       TCGA-G7-6795 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-6796       TCGA-G7-6797       TCGA-G7-7501       TCGA-G7-7502 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC       TCGA-G7-A8LD 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59R       TCGA-GL-A9DC 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128       TCGA-HE-7129 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NF       TCGA-HE-A5NH       TCGA-HE-A5NI 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-HE-A5NJ       TCGA-HE-A5NK       TCGA-HE-A5NL       TCGA-IA-A40U 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IA-A83V       TCGA-IA-A83W 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M8       TCGA-J7-6720 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-J7-8537       TCGA-J7-A8I2       TCGA-KL-8324       TCGA-KL-8325 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8326       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8329 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8330       TCGA-KL-8331       TCGA-KL-8332       TCGA-KL-8333 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336       TCGA-KL-8337 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8346       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8440 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KM-8441       TCGA-KM-8442       TCGA-KM-8443       TCGA-KM-8476 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8421 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8425       TCGA-KN-8426 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8435       TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8403 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8406       TCGA-KO-8407 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8411 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KO-8413       TCGA-KO-8414       TCGA-KO-8415       TCGA-KO-8416 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE       TCGA-KV-A74V 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-MH-A55Z       TCGA-MH-A560       TCGA-MH-A562       TCGA-MH-A855 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-P4-A5EB       TCGA-P4-A5ED       TCGA-P4-AAVL       TCGA-P4-AAVM 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-PJ-A8JU       TCGA-Q2-A5QZ 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-SX-A71R       TCGA-SX-A71U       TCGA-SX-A7SM       TCGA-SX-A7SN 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-SX-A7SO       TCGA-SX-A7SP       TCGA-SX-A7SQ       TCGA-SX-A7SR 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-SX-A7SS       TCGA-UN-AAZ9       TCGA-UZ-A9PJ       TCGA-UZ-A9PK 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-UZ-A9PL       TCGA-UZ-A9PM       TCGA-UZ-A9PN       TCGA-UZ-A9PO 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PS       TCGA-UZ-A9PU 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-UZ-A9PV       TCGA-UZ-A9PX       TCGA-UZ-A9PZ       TCGA-UZ-A9Q0 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-UZ-A9Q1       TCGA-V9-A7HT       TCGA-WN-A9G9       TCGA-Y8-A894 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-Y8-A895       TCGA-Y8-A896       TCGA-Y8-A897       TCGA-Y8-A8RY 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STXBP3 MUTATED        2      0      0      0      0      0      0
  STXBP3 WILD-TYPE    176     62    105    129     52     61     82
D66V6, multiclass
[1] "Remove cluster labels:" "STXBP3 MUTATED"        
clus
  STXBP3 MUTATED STXBP3 WILD-TYPE 
               2              667 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J3       TCGA-2Z-A9J5 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-2Z-A9J6       TCGA-2Z-A9J7       TCGA-2Z-A9J8       TCGA-2Z-A9JD 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-2Z-A9JE       TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JL 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-2Z-A9JO       TCGA-2Z-A9JP       TCGA-2Z-A9JQ       TCGA-2Z-A9JT 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-4A-A93W       TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JU 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9KE       TCGA-A3-3311       TCGA-A3-3313 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A3-3317       TCGA-A3-3322       TCGA-A3-3323       TCGA-A3-3326 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A3-3331       TCGA-A3-3347       TCGA-A3-3349       TCGA-A3-3357 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A3-3362       TCGA-A3-3367       TCGA-A3-3370       TCGA-A3-3373 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A3-3374       TCGA-A3-3376       TCGA-A3-3385       TCGA-A3-3387 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-7288       TCGA-A4-7583       TCGA-A4-7584       TCGA-A4-7585 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-7734       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8311       TCGA-A4-8517       TCGA-A4-8630 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-A57E       TCGA-AK-3427       TCGA-AK-3428       TCGA-AK-3434 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-AK-3436       TCGA-AK-3451       TCGA-AK-3456       TCGA-AL-3472 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AL-A5DJ       TCGA-B0-4690 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4691       TCGA-B0-4693       TCGA-B0-4694       TCGA-B0-4697 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4700       TCGA-B0-4703       TCGA-B0-4706       TCGA-B0-4707 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4713       TCGA-B0-4714 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4718       TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4813 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4814       TCGA-B0-4815       TCGA-B0-4816       TCGA-B0-4817 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4818       TCGA-B0-4819       TCGA-B0-4822       TCGA-B0-4823 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4824       TCGA-B0-4827       TCGA-B0-4828       TCGA-B0-4833 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4838       TCGA-B0-4839 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4842       TCGA-B0-4843       TCGA-B0-4844       TCGA-B0-4845 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4846       TCGA-B0-4847       TCGA-B0-4848       TCGA-B0-4849 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4852       TCGA-B0-4945       TCGA-B0-5075       TCGA-B0-5077 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5081       TCGA-B0-5084       TCGA-B0-5085 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5088       TCGA-B0-5092       TCGA-B0-5094       TCGA-B0-5095 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5096       TCGA-B0-5097       TCGA-B0-5098       TCGA-B0-5099 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5100       TCGA-B0-5102       TCGA-B0-5104       TCGA-B0-5106 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5107       TCGA-B0-5108       TCGA-B0-5109       TCGA-B0-5110 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5113       TCGA-B0-5115       TCGA-B0-5116       TCGA-B0-5117 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5119       TCGA-B0-5120       TCGA-B0-5121       TCGA-B0-5399 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5400       TCGA-B0-5402       TCGA-B0-5691       TCGA-B0-5692 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5693       TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5697       TCGA-B0-5698       TCGA-B0-5699       TCGA-B0-5701 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5703       TCGA-B0-5705       TCGA-B0-5706 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5707       TCGA-B0-5709       TCGA-B0-5710       TCGA-B0-5711 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5712       TCGA-B0-5713       TCGA-B0-5812       TCGA-B1-5398 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B1-7332       TCGA-B1-A47M       TCGA-B1-A47N       TCGA-B1-A47O 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B1-A654       TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B2-4098       TCGA-B2-4099       TCGA-B2-4101       TCGA-B2-5633 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B2-5635       TCGA-B2-5641       TCGA-B3-8121       TCGA-B3-A6W5 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5832       TCGA-B4-5834       TCGA-B4-5835 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B4-5836       TCGA-B4-5838       TCGA-B4-5843       TCGA-B4-5844 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B8-4143       TCGA-B8-4146       TCGA-B8-4153       TCGA-B8-4620 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B8-4621       TCGA-B8-4622       TCGA-B8-5158       TCGA-B8-5159 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B8-5162       TCGA-B8-5163       TCGA-B8-5164       TCGA-B8-5165 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B8-5545       TCGA-B8-5546       TCGA-B8-5549       TCGA-B8-5550 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-5155 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B9-5156       TCGA-B9-A44B       TCGA-B9-A5W7       TCGA-B9-A5W8 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH       TCGA-B9-A8YI 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4158       TCGA-BP-4161       TCGA-BP-4164       TCGA-BP-4165 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4169       TCGA-BP-4170       TCGA-BP-4173       TCGA-BP-4174 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4326       TCGA-BP-4329       TCGA-BP-4330       TCGA-BP-4331 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4337       TCGA-BP-4338       TCGA-BP-4341       TCGA-BP-4342 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4343       TCGA-BP-4345       TCGA-BP-4346       TCGA-BP-4347 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4349       TCGA-BP-4351       TCGA-BP-4352       TCGA-BP-4354 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4355       TCGA-BP-4756       TCGA-BP-4758       TCGA-BP-4759 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4760       TCGA-BP-4761       TCGA-BP-4762       TCGA-BP-4763 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4765       TCGA-BP-4766       TCGA-BP-4768       TCGA-BP-4770 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4771       TCGA-BP-4774       TCGA-BP-4775       TCGA-BP-4777 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4781       TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4797       TCGA-BP-4798       TCGA-BP-4799       TCGA-BP-4801 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4803       TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4960 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4961       TCGA-BP-4962       TCGA-BP-4963       TCGA-BP-4964 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4965       TCGA-BP-4967       TCGA-BP-4968       TCGA-BP-4970 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4971       TCGA-BP-4972       TCGA-BP-4973       TCGA-BP-4974 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4975       TCGA-BP-4976       TCGA-BP-4977       TCGA-BP-4981 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4983       TCGA-BP-4985       TCGA-BP-4986 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4987       TCGA-BP-4988       TCGA-BP-4989       TCGA-BP-4991 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4993       TCGA-BP-4994       TCGA-BP-4995 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4998       TCGA-BP-4999       TCGA-BP-5000       TCGA-BP-5001 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5004       TCGA-BP-5006       TCGA-BP-5007       TCGA-BP-5008 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5009       TCGA-BP-5010       TCGA-BP-5168       TCGA-BP-5169 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5170       TCGA-BP-5173       TCGA-BP-5174       TCGA-BP-5175 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5176       TCGA-BP-5177       TCGA-BP-5178       TCGA-BP-5180 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5181       TCGA-BP-5182       TCGA-BP-5183       TCGA-BP-5184 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5185       TCGA-BP-5186       TCGA-BP-5187       TCGA-BP-5189 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5190       TCGA-BP-5191       TCGA-BP-5192       TCGA-BP-5194 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5195       TCGA-BP-5196       TCGA-BP-5198       TCGA-BP-5199 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5200       TCGA-BP-5201       TCGA-BP-5202       TCGA-BQ-5875 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5885 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7046       TCGA-BQ-7048       TCGA-BQ-7049 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053       TCGA-BQ-7055 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7056       TCGA-BQ-7058       TCGA-BQ-7059       TCGA-BQ-7060 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7061       TCGA-BQ-7062       TCGA-CJ-4634       TCGA-CJ-4635 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4638       TCGA-CJ-4640       TCGA-CJ-4868       TCGA-CJ-4869 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4871       TCGA-CJ-4872       TCGA-CJ-4873 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4874       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4882       TCGA-CJ-4884       TCGA-CJ-4885 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4886       TCGA-CJ-4887       TCGA-CJ-4888       TCGA-CJ-4889 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4890       TCGA-CJ-4891       TCGA-CJ-4892       TCGA-CJ-4893 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4894       TCGA-CJ-4895       TCGA-CJ-4897       TCGA-CJ-4899 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4900       TCGA-CJ-4901       TCGA-CJ-4902       TCGA-CJ-4903 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4904       TCGA-CJ-4905       TCGA-CJ-4907       TCGA-CJ-4908 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4912       TCGA-CJ-4913       TCGA-CJ-4916       TCGA-CJ-4918 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4920       TCGA-CJ-4923       TCGA-CJ-5671       TCGA-CJ-5672 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-5675       TCGA-CJ-5676       TCGA-CJ-5677       TCGA-CJ-5678 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-5679       TCGA-CJ-5680       TCGA-CJ-5681       TCGA-CJ-5682 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-5683       TCGA-CJ-5684       TCGA-CJ-5686       TCGA-CJ-6027 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-6028       TCGA-CJ-6030       TCGA-CJ-6031       TCGA-CJ-6032 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-6033       TCGA-CW-5580       TCGA-CW-5581       TCGA-CW-5583 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CW-5585       TCGA-CW-5588       TCGA-CW-5589       TCGA-CW-5591 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CW-6087       TCGA-CW-6090       TCGA-CW-6093       TCGA-CW-6097 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-4853       TCGA-CZ-4854       TCGA-CZ-4856       TCGA-CZ-4857 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-4858       TCGA-CZ-4859       TCGA-CZ-4861       TCGA-CZ-4862 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-4863       TCGA-CZ-4865       TCGA-CZ-4866       TCGA-CZ-5451 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5452       TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5456       TCGA-CZ-5457       TCGA-CZ-5458       TCGA-CZ-5459 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5460       TCGA-CZ-5461       TCGA-CZ-5462       TCGA-CZ-5463 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5465       TCGA-CZ-5466       TCGA-CZ-5467       TCGA-CZ-5468 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5982       TCGA-CZ-5984 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5985       TCGA-CZ-5986       TCGA-CZ-5987       TCGA-CZ-5988 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5989       TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5568 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DV-5569       TCGA-DV-5574       TCGA-DV-5575       TCGA-DV-5576 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DW-5560       TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7837 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7841 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DW-7842       TCGA-DW-7963       TCGA-DZ-6131       TCGA-DZ-6132 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135       TCGA-EU-5904 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-EU-5905       TCGA-EU-5906       TCGA-EU-5907       TCGA-EV-5901 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-EV-5902       TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-F9-A7Q0 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-F9-A7VF       TCGA-F9-A8NY       TCGA-F9-A97G       TCGA-G7-6789 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793       TCGA-G7-6795 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-6796       TCGA-G7-6797       TCGA-G7-7501       TCGA-G7-7502 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC       TCGA-G7-A8LD 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59R       TCGA-GL-A9DC 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128       TCGA-HE-7129 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-HE-7130       TCGA-HE-A5NF       TCGA-HE-A5NH       TCGA-HE-A5NI 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-HE-A5NJ       TCGA-HE-A5NK       TCGA-HE-A5NL       TCGA-IA-A40U 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-IA-A40X       TCGA-IA-A40Y       TCGA-IA-A83V       TCGA-IA-A83W 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M8       TCGA-J7-6720 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-J7-8537       TCGA-J7-A8I2       TCGA-KL-8324       TCGA-KL-8325 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8326       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8329 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8330       TCGA-KL-8331       TCGA-KL-8332       TCGA-KL-8333 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8334       TCGA-KL-8335       TCGA-KL-8336       TCGA-KL-8337 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340       TCGA-KL-8341 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344       TCGA-KL-8345 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8346       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8440 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KM-8441       TCGA-KM-8442       TCGA-KM-8443       TCGA-KM-8476 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419       TCGA-KN-8421 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8425       TCGA-KN-8426 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8435       TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8403 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KO-8404       TCGA-KO-8405       TCGA-KO-8406       TCGA-KO-8407 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8411 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KO-8413       TCGA-KO-8414       TCGA-KO-8415       TCGA-KO-8416 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KO-8417       TCGA-KV-A6GD       TCGA-KV-A6GE       TCGA-KV-A74V 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-MH-A55Z       TCGA-MH-A560       TCGA-MH-A562       TCGA-MH-A855 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-P4-A5E6       TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-P4-A5EB       TCGA-P4-A5ED       TCGA-P4-AAVL       TCGA-P4-AAVM 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-PJ-A8JU       TCGA-Q2-A5QZ 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-SX-A71R       TCGA-SX-A71U       TCGA-SX-A7SM       TCGA-SX-A7SN 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-SX-A7SO       TCGA-SX-A7SP       TCGA-SX-A7SQ       TCGA-SX-A7SR 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-SX-A7SS       TCGA-UN-AAZ9       TCGA-UZ-A9PJ       TCGA-UZ-A9PK 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-UZ-A9PL       TCGA-UZ-A9PM       TCGA-UZ-A9PN       TCGA-UZ-A9PO 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PS       TCGA-UZ-A9PU 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-UZ-A9PV       TCGA-UZ-A9PX       TCGA-UZ-A9PZ       TCGA-UZ-A9Q0 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-UZ-A9Q1       TCGA-V9-A7HT       TCGA-WN-A9G9       TCGA-Y8-A894 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-Y8-A895       TCGA-Y8-A896       TCGA-Y8-A897       TCGA-Y8-A8RY 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STXBP3 MUTATED        1      0      1      3
  STXBP3 WILD-TYPE    106    179    232    259
D66V7, multiclass
        clus
vv       STXBP3 MUTATED STXBP3 WILD-TYPE
  CLUS_1              1              106
  CLUS_2              0              179
  CLUS_3              1              232
  CLUS_4              3              259
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STXBP3 MUTATED        0      0      2      0      0      0      0      0
  STXBP3 WILD-TYPE     84     50    120     77    107     32     90     52
                  vv
clus               CLUS_9
  STXBP3 MUTATED        3
  STXBP3 WILD-TYPE    164
D66V8, multiclass
        clus
vv       STXBP3 MUTATED STXBP3 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               50
  CLUS_3              2              120
  CLUS_4              0               77
  CLUS_5              0              107
  CLUS_6              0               32
  CLUS_7              0               90
  CLUS_8              0               52
  CLUS_9              3              164
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STXBP3 MUTATED        3      1      1
  STXBP3 WILD-TYPE    326    163    281
D66V9, multiclass
        clus
vv       STXBP3 MUTATED STXBP3 WILD-TYPE
  CLUS_1              3              326
  CLUS_2              1              163
  CLUS_3              1              281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STXBP3 MUTATED        0      1      1      3
  STXBP3 WILD-TYPE     73    299    197    201
D66V10, multiclass
        clus
vv       STXBP3 MUTATED STXBP3 WILD-TYPE
  CLUS_1              0               73
  CLUS_2              1              299
  CLUS_3              1              197
  CLUS_4              3              201
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STXBP3 MUTATED        1      0      0      0
  STXBP3 WILD-TYPE    154     66     56     96
D66V11, multiclass
[1] "Remove cluster labels:" "STXBP3 MUTATED"        
clus
  STXBP3 MUTATED STXBP3 WILD-TYPE 
               1              372 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J2       TCGA-2Z-A9J3 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-2Z-A9J5       TCGA-2Z-A9J6       TCGA-2Z-A9JD       TCGA-2Z-A9JG 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JK       TCGA-2Z-A9JL 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-2Z-A9JM       TCGA-2Z-A9JN       TCGA-2Z-A9JO       TCGA-2Z-A9JP 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-2Z-A9JQ       TCGA-2Z-A9JR       TCGA-2Z-A9JT       TCGA-4A-A93W 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JV       TCGA-5P-A9JW 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9JZ       TCGA-5P-A9K0       TCGA-5P-A9K6 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-5P-A9K8       TCGA-5P-A9KA       TCGA-5P-A9KC       TCGA-5P-A9KE 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B1-A47O       TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B3-3925       TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B4-5836       TCGA-B8-4621       TCGA-B8-5545       TCGA-B8-5550 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-4115 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B9-4117       TCGA-B9-5155       TCGA-B9-5156       TCGA-B9-A44B 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH       TCGA-B9-A8YI 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058       TCGA-BQ-7059 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-CJ-4870 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878       TCGA-CJ-4881 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890       TCGA-CJ-4895 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675       TCGA-CJ-5676 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686       TCGA-CJ-6031 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589       TCGA-CW-6087 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858       TCGA-CZ-5453 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457       TCGA-CZ-5459 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466       TCGA-CZ-5467 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989       TCGA-DV-5565 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560       TCGA-DW-5561 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DW-7834       TCGA-DW-7836       TCGA-DW-7837       TCGA-DW-7838 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-F9-A4JJ       TCGA-F9-A7Q0       TCGA-F9-A8NY       TCGA-F9-A97G 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC       TCGA-G7-A8LD 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-GL-A9DC 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128       TCGA-HE-7130 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-HE-A5NJ       TCGA-HE-A5NL       TCGA-IA-A40U       TCGA-IA-A40X 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IA-A83S       TCGA-IA-A83T       TCGA-IA-A83V 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-IA-A83W       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-J7-A8I2       TCGA-KL-8323 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-KV-A74V       TCGA-MH-A854       TCGA-MH-A855 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-MH-A856       TCGA-MH-A857       TCGA-O9-A75Z       TCGA-P4-A5E6 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA       TCGA-P4-AAVL 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-P4-AAVM       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-SX-A71R       TCGA-SX-A71S       TCGA-SX-A71U       TCGA-SX-A71W 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-SX-A7SL       TCGA-SX-A7SM       TCGA-SX-A7SN       TCGA-SX-A7SO 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-SX-A7SP       TCGA-SX-A7SR       TCGA-SX-A7SS       TCGA-SX-A7SU 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-UZ-A9PJ       TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PN 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-UZ-A9PO       TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PU 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-UZ-A9PV       TCGA-UZ-A9PX       TCGA-UZ-A9PZ       TCGA-V9-A7HT 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-WN-A9G9       TCGA-WN-AB4C       TCGA-Y8-A897       TCGA-Y8-A898 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-Y8-A8RY       TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STXBP3 MUTATED        0      0      1      0      0      0      0
  STXBP3 WILD-TYPE     90     73     49     19     37     58     46
D66V12, multiclass
[1] "Remove cluster labels:" "STXBP3 MUTATED"        
clus
  STXBP3 MUTATED STXBP3 WILD-TYPE 
               1              372 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J2       TCGA-2Z-A9J3 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-2Z-A9J5       TCGA-2Z-A9J6       TCGA-2Z-A9JD       TCGA-2Z-A9JG 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JK       TCGA-2Z-A9JL 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-2Z-A9JM       TCGA-2Z-A9JN       TCGA-2Z-A9JO       TCGA-2Z-A9JP 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-2Z-A9JQ       TCGA-2Z-A9JR       TCGA-2Z-A9JT       TCGA-4A-A93W 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JV       TCGA-5P-A9JW 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9JZ       TCGA-5P-A9K0       TCGA-5P-A9K6 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-5P-A9K8       TCGA-5P-A9KA       TCGA-5P-A9KC       TCGA-5P-A9KE 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-AK-3440 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466       TCGA-AL-3472 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU       TCGA-B0-4700 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712       TCGA-B0-4810 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837       TCGA-B0-4852 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088       TCGA-B0-5399 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693       TCGA-B0-5694 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699       TCGA-B0-5702 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398       TCGA-B1-A47N 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B1-A47O       TCGA-B1-A654       TCGA-B1-A656       TCGA-B1-A657 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-5633       TCGA-B2-5635 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B3-3925       TCGA-B3-4104       TCGA-B3-8121       TCGA-B4-5377 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B4-5836       TCGA-B8-4621       TCGA-B8-5545       TCGA-B8-5550 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553       TCGA-B9-4115 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B9-4117       TCGA-B9-5155       TCGA-B9-5156       TCGA-B9-A44B 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH       TCGA-B9-A8YI 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761       TCGA-BP-4770 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790       TCGA-BP-4804 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967       TCGA-BP-4968 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976       TCGA-BP-4981 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988       TCGA-BP-4989 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998       TCGA-BP-5001 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876       TCGA-BQ-5877 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880       TCGA-BQ-5881 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884       TCGA-BQ-5886 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889       TCGA-BQ-5890 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893       TCGA-BQ-5894 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046       TCGA-BQ-7048 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051       TCGA-BQ-7053 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058       TCGA-BQ-7059 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062       TCGA-CJ-4870 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878       TCGA-CJ-4881 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890       TCGA-CJ-4895 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675       TCGA-CJ-5676 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686       TCGA-CJ-6031 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589       TCGA-CW-6087 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858       TCGA-CZ-5453 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457       TCGA-CZ-5459 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466       TCGA-CZ-5467 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989       TCGA-DV-5565 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560       TCGA-DW-5561 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DW-7834       TCGA-DW-7836       TCGA-DW-7837       TCGA-DW-7838 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842       TCGA-DZ-6131 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134       TCGA-DZ-6135 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902       TCGA-EV-5903 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-F9-A4JJ       TCGA-F9-A7Q0       TCGA-F9-A8NY       TCGA-F9-A97G 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6792       TCGA-G7-6793 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC       TCGA-G7-A8LD 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-GL-A9DC 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128       TCGA-HE-7130 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-HE-A5NJ       TCGA-HE-A5NL       TCGA-IA-A40U       TCGA-IA-A40X 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IA-A83S       TCGA-IA-A83T       TCGA-IA-A83V 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-IA-A83W       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-J7-A8I2       TCGA-KL-8323 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-KV-A74V       TCGA-MH-A854       TCGA-MH-A855 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-MH-A856       TCGA-MH-A857       TCGA-O9-A75Z       TCGA-P4-A5E6 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA       TCGA-P4-AAVL 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-P4-AAVM       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-SX-A71R       TCGA-SX-A71S       TCGA-SX-A71U       TCGA-SX-A71W 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-SX-A7SL       TCGA-SX-A7SM       TCGA-SX-A7SN       TCGA-SX-A7SO 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-SX-A7SP       TCGA-SX-A7SR       TCGA-SX-A7SS       TCGA-SX-A7SU 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-UZ-A9PJ       TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PN 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-UZ-A9PO       TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PU 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-UZ-A9PV       TCGA-UZ-A9PX       TCGA-UZ-A9PZ       TCGA-V9-A7HT 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-WN-A9G9       TCGA-WN-AB4C       TCGA-Y8-A897       TCGA-Y8-A898 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 
      TCGA-Y8-A8RY       TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" "STXBP3 WILD-TYPE" 

Clustering(67) Variable = FAM20C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM20C MUTATED        0      0      0      0
  FAM20C WILD-TYPE     17     16     10     15
D67V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM20C MUTATED        0      0      0      0      0
  FAM20C WILD-TYPE      7     16     16     10      9
D67V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM20C MUTATED        5      0      0
  FAM20C WILD-TYPE    308    168    298
D67V3, multiclass
        clus
vv       FAM20C MUTATED FAM20C WILD-TYPE
  CLUS_1              5              308
  CLUS_2              0              168
  CLUS_3              0              298
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM20C MUTATED        1      0      0      0      4
  FAM20C WILD-TYPE     94    111    142     63    181
D67V4, multiclass
        clus
vv       FAM20C MUTATED FAM20C WILD-TYPE
  CLUS_1              1               94
  CLUS_2              0              111
  CLUS_3              0              142
  CLUS_4              0               63
  CLUS_5              4              181
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM20C MUTATED        2      1      1      1
  FAM20C WILD-TYPE    161    160    169    174
D67V5, multiclass
        clus
vv       FAM20C MUTATED FAM20C WILD-TYPE
  CLUS_1              2              161
  CLUS_2              1              160
  CLUS_3              1              169
  CLUS_4              1              174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM20C MUTATED        2      0      1      0      0      1      1
  FAM20C WILD-TYPE    176     62    104    129     52     60     81
D67V6, multiclass
        clus
vv       FAM20C MUTATED FAM20C WILD-TYPE
  CLUS_1              2              176
  CLUS_2              0               62
  CLUS_3              1              104
  CLUS_4              0              129
  CLUS_5              0               52
  CLUS_6              1               60
  CLUS_7              1               81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM20C MUTATED        1      0      0      4
  FAM20C WILD-TYPE    106    179    233    258
D67V7, multiclass
        clus
vv       FAM20C MUTATED FAM20C WILD-TYPE
  CLUS_1              1              106
  CLUS_2              0              179
  CLUS_3              0              233
  CLUS_4              4              258
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM20C MUTATED        1      0      0      0      0      0      0      0
  FAM20C WILD-TYPE     83     50    122     77    107     32     90     52
                  vv
clus               CLUS_9
  FAM20C MUTATED        4
  FAM20C WILD-TYPE    163
D67V8, multiclass
        clus
vv       FAM20C MUTATED FAM20C WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               50
  CLUS_3              0              122
  CLUS_4              0               77
  CLUS_5              0              107
  CLUS_6              0               32
  CLUS_7              0               90
  CLUS_8              0               52
  CLUS_9              4              163
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM20C MUTATED        5      0      0
  FAM20C WILD-TYPE    324    164    282
D67V9, multiclass
        clus
vv       FAM20C MUTATED FAM20C WILD-TYPE
  CLUS_1              5              324
  CLUS_2              0              164
  CLUS_3              0              282
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM20C MUTATED        1      0      0      4
  FAM20C WILD-TYPE     72    300    198    200
D67V10, multiclass
        clus
vv       FAM20C MUTATED FAM20C WILD-TYPE
  CLUS_1              1               72
  CLUS_2              0              300
  CLUS_3              0              198
  CLUS_4              4              200
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM20C MUTATED        3      0      0      0
  FAM20C WILD-TYPE    152     66     56     96
D67V11, multiclass
        clus
vv       FAM20C MUTATED FAM20C WILD-TYPE
  CLUS_1              3              152
  CLUS_2              0               66
  CLUS_3              0               56
  CLUS_4              0               96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM20C MUTATED        1      0      2      0      0      0      0
  FAM20C WILD-TYPE     89     73     48     19     37     58     46
D67V12, multiclass
        clus
vv       FAM20C MUTATED FAM20C WILD-TYPE
  CLUS_1              1               89
  CLUS_2              0               73
  CLUS_3              2               48
  CLUS_4              0               19
  CLUS_5              0               37
  CLUS_6              0               58
  CLUS_7              0               46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = CCBL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCBL2 MUTATED        0      0      0      0
  CCBL2 WILD-TYPE     17     16     10     15
D68V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCBL2 MUTATED        0      0      0      0      0
  CCBL2 WILD-TYPE      7     16     16     10      9
D68V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCBL2 MUTATED        2      1      0
  CCBL2 WILD-TYPE    311    167    298
D68V3, multiclass
        clus
vv       CCBL2 MUTATED CCBL2 WILD-TYPE
  CLUS_1             2             311
  CLUS_2             1             167
  CLUS_3             0             298
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCBL2 MUTATED        0      0      1      0      2
  CCBL2 WILD-TYPE     95    111    141     63    183
D68V4, multiclass
        clus
vv       CCBL2 MUTATED CCBL2 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             0             111
  CLUS_3             1             141
  CLUS_4             0              63
  CLUS_5             2             183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCBL2 MUTATED        0      0      0      1
  CCBL2 WILD-TYPE    163    161    170    174
D68V5, multiclass
[1] "Remove cluster labels:" "CCBL2 MUTATED"         
clus
  CCBL2 MUTATED CCBL2 WILD-TYPE 
              1             668 
     TCGA-2K-A9WE      TCGA-2Z-A9J1      TCGA-2Z-A9J3      TCGA-2Z-A9J5 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-2Z-A9J6      TCGA-2Z-A9J7      TCGA-2Z-A9J8      TCGA-2Z-A9JD 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-2Z-A9JE      TCGA-2Z-A9JI      TCGA-2Z-A9JJ      TCGA-2Z-A9JL 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-2Z-A9JO      TCGA-2Z-A9JP      TCGA-2Z-A9JQ      TCGA-2Z-A9JT 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-4A-A93W      TCGA-4A-A93X      TCGA-4A-A93Y      TCGA-5P-A9JU 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-5P-A9JY      TCGA-5P-A9KE      TCGA-A3-3311      TCGA-A3-3313 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A3-3317      TCGA-A3-3322      TCGA-A3-3323      TCGA-A3-3326 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A3-3331      TCGA-A3-3347      TCGA-A3-3349      TCGA-A3-3357 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A3-3362      TCGA-A3-3367      TCGA-A3-3370      TCGA-A3-3373 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A3-3374      TCGA-A3-3376      TCGA-A3-3385      TCGA-A3-3387 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-7288      TCGA-A4-7583      TCGA-A4-7584      TCGA-A4-7585 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-7734      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8311      TCGA-A4-8517      TCGA-A4-8630 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-A57E      TCGA-AK-3427      TCGA-AK-3428      TCGA-AK-3434 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-AK-3436      TCGA-AK-3451      TCGA-AK-3456      TCGA-AL-3472 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AL-A5DJ      TCGA-B0-4690 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4691      TCGA-B0-4693      TCGA-B0-4694      TCGA-B0-4697 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4700      TCGA-B0-4703      TCGA-B0-4706      TCGA-B0-4707 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4713      TCGA-B0-4714 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4718      TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4813 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4814      TCGA-B0-4815      TCGA-B0-4816      TCGA-B0-4817 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4819      TCGA-B0-4822      TCGA-B0-4823      TCGA-B0-4824 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4827      TCGA-B0-4828      TCGA-B0-4833      TCGA-B0-4836 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4837      TCGA-B0-4838      TCGA-B0-4839      TCGA-B0-4841 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4842      TCGA-B0-4843      TCGA-B0-4844      TCGA-B0-4845 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4846      TCGA-B0-4847      TCGA-B0-4848      TCGA-B0-4849 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4852      TCGA-B0-4945      TCGA-B0-5075      TCGA-B0-5077 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5081      TCGA-B0-5084      TCGA-B0-5085 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5088      TCGA-B0-5092      TCGA-B0-5094      TCGA-B0-5095 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5096      TCGA-B0-5097      TCGA-B0-5098      TCGA-B0-5099 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5100      TCGA-B0-5102      TCGA-B0-5104      TCGA-B0-5106 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5107      TCGA-B0-5108      TCGA-B0-5109      TCGA-B0-5110 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5113      TCGA-B0-5115      TCGA-B0-5116      TCGA-B0-5117 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5119      TCGA-B0-5120      TCGA-B0-5121      TCGA-B0-5399 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5400      TCGA-B0-5402      TCGA-B0-5691      TCGA-B0-5692 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5693      TCGA-B0-5694      TCGA-B0-5695      TCGA-B0-5696 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5697      TCGA-B0-5698      TCGA-B0-5699      TCGA-B0-5701 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5702      TCGA-B0-5703      TCGA-B0-5705      TCGA-B0-5706 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5707      TCGA-B0-5709      TCGA-B0-5710      TCGA-B0-5711 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5712      TCGA-B0-5713      TCGA-B0-5812      TCGA-B1-5398 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B1-7332      TCGA-B1-A47M      TCGA-B1-A47N      TCGA-B1-A47O 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B2-4098      TCGA-B2-4099      TCGA-B2-4101      TCGA-B2-5633 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B2-5635      TCGA-B2-5641      TCGA-B3-8121      TCGA-B3-A6W5 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B4-5377      TCGA-B4-5832      TCGA-B4-5834      TCGA-B4-5835 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B4-5836      TCGA-B4-5838      TCGA-B4-5843      TCGA-B4-5844 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B8-4143      TCGA-B8-4146      TCGA-B8-4153      TCGA-B8-4620 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B8-4621      TCGA-B8-4622      TCGA-B8-5158      TCGA-B8-5159 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B8-5162      TCGA-B8-5163      TCGA-B8-5164      TCGA-B8-5165 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B8-5545      TCGA-B8-5546      TCGA-B8-5549      TCGA-B8-5550 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B8-5551      TCGA-B8-5552      TCGA-B8-5553      TCGA-B9-5155 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B9-5156      TCGA-B9-7268      TCGA-B9-A44B      TCGA-B9-A5W7 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B9-A5W8      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-B9-A8YH 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B9-A8YI      TCGA-BP-4158      TCGA-BP-4161      TCGA-BP-4164 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4165      TCGA-BP-4169      TCGA-BP-4170      TCGA-BP-4173 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4174      TCGA-BP-4326      TCGA-BP-4329      TCGA-BP-4330 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4331      TCGA-BP-4337      TCGA-BP-4338      TCGA-BP-4341 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4342      TCGA-BP-4343      TCGA-BP-4345      TCGA-BP-4346 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4347      TCGA-BP-4349      TCGA-BP-4351      TCGA-BP-4352 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4354      TCGA-BP-4355      TCGA-BP-4756      TCGA-BP-4758 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4759      TCGA-BP-4760      TCGA-BP-4761      TCGA-BP-4762 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4763      TCGA-BP-4765      TCGA-BP-4766      TCGA-BP-4768 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4770      TCGA-BP-4771      TCGA-BP-4774      TCGA-BP-4775 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4777      TCGA-BP-4781      TCGA-BP-4787      TCGA-BP-4789 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4790      TCGA-BP-4797      TCGA-BP-4798      TCGA-BP-4799 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4801      TCGA-BP-4803      TCGA-BP-4804      TCGA-BP-4807 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4960      TCGA-BP-4961      TCGA-BP-4962      TCGA-BP-4963 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4964      TCGA-BP-4965      TCGA-BP-4967      TCGA-BP-4968 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4970      TCGA-BP-4971      TCGA-BP-4972      TCGA-BP-4973 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4975      TCGA-BP-4976      TCGA-BP-4977 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4981      TCGA-BP-4982      TCGA-BP-4983      TCGA-BP-4985 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4986      TCGA-BP-4987      TCGA-BP-4988      TCGA-BP-4989 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4991      TCGA-BP-4992      TCGA-BP-4993      TCGA-BP-4994 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-4999      TCGA-BP-5000 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5001      TCGA-BP-5004      TCGA-BP-5006      TCGA-BP-5007 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5008      TCGA-BP-5009      TCGA-BP-5010      TCGA-BP-5168 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5169      TCGA-BP-5170      TCGA-BP-5173      TCGA-BP-5174 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5175      TCGA-BP-5176      TCGA-BP-5177      TCGA-BP-5178 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5180      TCGA-BP-5181      TCGA-BP-5182      TCGA-BP-5183 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5184      TCGA-BP-5185      TCGA-BP-5186      TCGA-BP-5187 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5189      TCGA-BP-5190      TCGA-BP-5191      TCGA-BP-5192 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5194      TCGA-BP-5195      TCGA-BP-5196      TCGA-BP-5198 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5199      TCGA-BP-5200      TCGA-BP-5201      TCGA-BP-5202 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5875      TCGA-BQ-5877      TCGA-BQ-5878      TCGA-BQ-5879 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882      TCGA-BQ-5883 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5885      TCGA-BQ-5887      TCGA-BQ-5888      TCGA-BQ-5889 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5890      TCGA-BQ-5891      TCGA-BQ-5892      TCGA-BQ-5893 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5894      TCGA-BQ-7044      TCGA-BQ-7046      TCGA-BQ-7048 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-7049      TCGA-BQ-7050      TCGA-BQ-7051      TCGA-BQ-7053 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-7055      TCGA-BQ-7056      TCGA-BQ-7058      TCGA-BQ-7059 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062      TCGA-CJ-4634 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4635      TCGA-CJ-4638      TCGA-CJ-4640      TCGA-CJ-4868 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4869      TCGA-CJ-4870      TCGA-CJ-4871      TCGA-CJ-4872 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4873      TCGA-CJ-4874      TCGA-CJ-4875      TCGA-CJ-4876 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4878      TCGA-CJ-4881      TCGA-CJ-4882      TCGA-CJ-4884 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4885      TCGA-CJ-4886      TCGA-CJ-4887      TCGA-CJ-4888 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4889      TCGA-CJ-4890      TCGA-CJ-4891      TCGA-CJ-4892 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4893      TCGA-CJ-4894      TCGA-CJ-4895      TCGA-CJ-4897 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4899      TCGA-CJ-4900      TCGA-CJ-4901      TCGA-CJ-4902 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4903      TCGA-CJ-4904      TCGA-CJ-4905      TCGA-CJ-4907 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4908      TCGA-CJ-4912      TCGA-CJ-4913      TCGA-CJ-4916 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4918      TCGA-CJ-4920      TCGA-CJ-4923      TCGA-CJ-5671 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-5672      TCGA-CJ-5675      TCGA-CJ-5676      TCGA-CJ-5677 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-5678      TCGA-CJ-5679      TCGA-CJ-5680      TCGA-CJ-5681 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-5682      TCGA-CJ-5683      TCGA-CJ-5684      TCGA-CJ-5686 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-6027      TCGA-CJ-6028      TCGA-CJ-6030      TCGA-CJ-6031 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-6032      TCGA-CJ-6033      TCGA-CW-5580      TCGA-CW-5581 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CW-5583      TCGA-CW-5585      TCGA-CW-5588      TCGA-CW-5589 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CW-5591      TCGA-CW-6087      TCGA-CW-6090      TCGA-CW-6093 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CW-6097      TCGA-CZ-4853      TCGA-CZ-4854      TCGA-CZ-4856 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-4857      TCGA-CZ-4858      TCGA-CZ-4859      TCGA-CZ-4861 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-4862      TCGA-CZ-4863      TCGA-CZ-4865      TCGA-CZ-4866 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5451      TCGA-CZ-5452      TCGA-CZ-5453      TCGA-CZ-5454 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5455      TCGA-CZ-5456      TCGA-CZ-5457      TCGA-CZ-5458 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5460      TCGA-CZ-5461      TCGA-CZ-5462 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5463      TCGA-CZ-5465      TCGA-CZ-5466      TCGA-CZ-5467 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5468      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5982 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5984      TCGA-CZ-5985      TCGA-CZ-5986      TCGA-CZ-5987 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5988      TCGA-CZ-5989      TCGA-DV-5565      TCGA-DV-5566 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DV-5568      TCGA-DV-5569      TCGA-DV-5574      TCGA-DV-5575 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DV-5576      TCGA-DW-5560      TCGA-DW-5561      TCGA-DW-7834 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DW-7837      TCGA-DW-7838      TCGA-DW-7839      TCGA-DW-7840 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DW-7841      TCGA-DW-7842      TCGA-DW-7963      TCGA-DZ-6131 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-EU-5904      TCGA-EU-5905      TCGA-EU-5906      TCGA-EU-5907 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903      TCGA-F9-A4JJ 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-F9-A7Q0      TCGA-F9-A7VF      TCGA-F9-A8NY      TCGA-F9-A97G 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792      TCGA-G7-6793 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-6797      TCGA-G7-7501 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-G7-A8LB      TCGA-G7-A8LC 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-G7-A8LD      TCGA-G7-A8LE      TCGA-GL-6846      TCGA-GL-7773 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59R 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-GL-A9DC      TCGA-GL-A9DD      TCGA-GL-A9DE      TCGA-HE-7128 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-HE-7129      TCGA-HE-7130      TCGA-HE-A5NF      TCGA-HE-A5NH 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-HE-A5NI      TCGA-HE-A5NJ      TCGA-HE-A5NK      TCGA-HE-A5NL 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-IA-A40U      TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IA-A83V 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-IA-A83W      TCGA-IZ-8195      TCGA-IZ-8196      TCGA-IZ-A6M8 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-J7-6720      TCGA-J7-8537      TCGA-J7-A8I2      TCGA-KL-8324 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8325      TCGA-KL-8326      TCGA-KL-8327      TCGA-KL-8328 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8329      TCGA-KL-8330      TCGA-KL-8331      TCGA-KL-8332 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335      TCGA-KL-8336 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8337      TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8345      TCGA-KL-8346      TCGA-KM-8438      TCGA-KM-8439 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KM-8440      TCGA-KM-8441      TCGA-KM-8442      TCGA-KM-8443 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KM-8476      TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8421      TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8425 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8426      TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8430      TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8434      TCGA-KN-8435      TCGA-KN-8436      TCGA-KN-8437 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KO-8403      TCGA-KO-8404      TCGA-KO-8405      TCGA-KO-8406 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KO-8407      TCGA-KO-8408      TCGA-KO-8409      TCGA-KO-8410 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KO-8411      TCGA-KO-8413      TCGA-KO-8414      TCGA-KO-8415 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD      TCGA-KV-A6GE 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KV-A74V      TCGA-MH-A55Z      TCGA-MH-A560      TCGA-MH-A562 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-MH-A855      TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-P4-A5EA      TCGA-P4-A5EB      TCGA-P4-A5ED      TCGA-P4-AAVL 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-P4-AAVM      TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-PJ-A8JU 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-Q2-A5QZ      TCGA-SX-A71R      TCGA-SX-A71U      TCGA-SX-A7SM 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-SX-A7SN      TCGA-SX-A7SO      TCGA-SX-A7SP      TCGA-SX-A7SQ 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-SX-A7SR      TCGA-SX-A7SS      TCGA-UN-AAZ9      TCGA-UZ-A9PJ 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-UZ-A9PK      TCGA-UZ-A9PL      TCGA-UZ-A9PM      TCGA-UZ-A9PN 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-UZ-A9PO      TCGA-UZ-A9PP      TCGA-UZ-A9PR      TCGA-UZ-A9PS 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-UZ-A9PU      TCGA-UZ-A9PV      TCGA-UZ-A9PX      TCGA-UZ-A9PZ 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-UZ-A9Q0      TCGA-UZ-A9Q1      TCGA-V9-A7HT      TCGA-WN-A9G9 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-Y8-A894      TCGA-Y8-A895      TCGA-Y8-A896      TCGA-Y8-A897 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-Y8-A8RY      TCGA-Y8-A8RZ      TCGA-Y8-A8S0      TCGA-Y8-A8S1 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCBL2 MUTATED        0      0      0      1      0      0      0
  CCBL2 WILD-TYPE    178     62    105    128     52     61     82
D68V6, multiclass
[1] "Remove cluster labels:" "CCBL2 MUTATED"         
clus
  CCBL2 MUTATED CCBL2 WILD-TYPE 
              1             668 
     TCGA-2K-A9WE      TCGA-2Z-A9J1      TCGA-2Z-A9J3      TCGA-2Z-A9J5 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-2Z-A9J6      TCGA-2Z-A9J7      TCGA-2Z-A9J8      TCGA-2Z-A9JD 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-2Z-A9JE      TCGA-2Z-A9JI      TCGA-2Z-A9JJ      TCGA-2Z-A9JL 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-2Z-A9JO      TCGA-2Z-A9JP      TCGA-2Z-A9JQ      TCGA-2Z-A9JT 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-4A-A93W      TCGA-4A-A93X      TCGA-4A-A93Y      TCGA-5P-A9JU 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-5P-A9JY      TCGA-5P-A9KE      TCGA-A3-3311      TCGA-A3-3313 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A3-3317      TCGA-A3-3322      TCGA-A3-3323      TCGA-A3-3326 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A3-3331      TCGA-A3-3347      TCGA-A3-3349      TCGA-A3-3357 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A3-3362      TCGA-A3-3367      TCGA-A3-3370      TCGA-A3-3373 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A3-3374      TCGA-A3-3376      TCGA-A3-3385      TCGA-A3-3387 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-7288      TCGA-A4-7583      TCGA-A4-7584      TCGA-A4-7585 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-7734      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8311      TCGA-A4-8517      TCGA-A4-8630 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-A57E      TCGA-AK-3427      TCGA-AK-3428      TCGA-AK-3434 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-AK-3436      TCGA-AK-3451      TCGA-AK-3456      TCGA-AL-3472 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-AL-3473      TCGA-AL-7173      TCGA-AL-A5DJ      TCGA-B0-4690 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4691      TCGA-B0-4693      TCGA-B0-4694      TCGA-B0-4697 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4700      TCGA-B0-4703      TCGA-B0-4706      TCGA-B0-4707 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4710      TCGA-B0-4712      TCGA-B0-4713      TCGA-B0-4714 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4718      TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4813 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4814      TCGA-B0-4815      TCGA-B0-4816      TCGA-B0-4817 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4819      TCGA-B0-4822      TCGA-B0-4823      TCGA-B0-4824 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4827      TCGA-B0-4828      TCGA-B0-4833      TCGA-B0-4836 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4837      TCGA-B0-4838      TCGA-B0-4839      TCGA-B0-4841 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4842      TCGA-B0-4843      TCGA-B0-4844      TCGA-B0-4845 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4846      TCGA-B0-4847      TCGA-B0-4848      TCGA-B0-4849 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4852      TCGA-B0-4945      TCGA-B0-5075      TCGA-B0-5077 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5080      TCGA-B0-5081      TCGA-B0-5084      TCGA-B0-5085 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5088      TCGA-B0-5092      TCGA-B0-5094      TCGA-B0-5095 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5096      TCGA-B0-5097      TCGA-B0-5098      TCGA-B0-5099 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5100      TCGA-B0-5102      TCGA-B0-5104      TCGA-B0-5106 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5107      TCGA-B0-5108      TCGA-B0-5109      TCGA-B0-5110 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5113      TCGA-B0-5115      TCGA-B0-5116      TCGA-B0-5117 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5119      TCGA-B0-5120      TCGA-B0-5121      TCGA-B0-5399 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5400      TCGA-B0-5402      TCGA-B0-5691      TCGA-B0-5692 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5693      TCGA-B0-5694      TCGA-B0-5695      TCGA-B0-5696 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5697      TCGA-B0-5698      TCGA-B0-5699      TCGA-B0-5701 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5702      TCGA-B0-5703      TCGA-B0-5705      TCGA-B0-5706 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5707      TCGA-B0-5709      TCGA-B0-5710      TCGA-B0-5711 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5712      TCGA-B0-5713      TCGA-B0-5812      TCGA-B1-5398 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B1-7332      TCGA-B1-A47M      TCGA-B1-A47N      TCGA-B1-A47O 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B1-A654      TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B2-4098      TCGA-B2-4099      TCGA-B2-4101      TCGA-B2-5633 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B2-5635      TCGA-B2-5641      TCGA-B3-8121      TCGA-B3-A6W5 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B4-5377      TCGA-B4-5832      TCGA-B4-5834      TCGA-B4-5835 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B4-5836      TCGA-B4-5838      TCGA-B4-5843      TCGA-B4-5844 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B8-4143      TCGA-B8-4146      TCGA-B8-4153      TCGA-B8-4620 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B8-4621      TCGA-B8-4622      TCGA-B8-5158      TCGA-B8-5159 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B8-5162      TCGA-B8-5163      TCGA-B8-5164      TCGA-B8-5165 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B8-5545      TCGA-B8-5546      TCGA-B8-5549      TCGA-B8-5550 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B8-5551      TCGA-B8-5552      TCGA-B8-5553      TCGA-B9-5155 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B9-5156      TCGA-B9-7268      TCGA-B9-A44B      TCGA-B9-A5W7 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B9-A5W8      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-B9-A8YH 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B9-A8YI      TCGA-BP-4158      TCGA-BP-4161      TCGA-BP-4164 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4165      TCGA-BP-4169      TCGA-BP-4170      TCGA-BP-4173 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4174      TCGA-BP-4326      TCGA-BP-4329      TCGA-BP-4330 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4331      TCGA-BP-4337      TCGA-BP-4338      TCGA-BP-4341 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4342      TCGA-BP-4343      TCGA-BP-4345      TCGA-BP-4346 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4347      TCGA-BP-4349      TCGA-BP-4351      TCGA-BP-4352 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4354      TCGA-BP-4355      TCGA-BP-4756      TCGA-BP-4758 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4759      TCGA-BP-4760      TCGA-BP-4761      TCGA-BP-4762 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4763      TCGA-BP-4765      TCGA-BP-4766      TCGA-BP-4768 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4770      TCGA-BP-4771      TCGA-BP-4774      TCGA-BP-4775 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4777      TCGA-BP-4781      TCGA-BP-4787      TCGA-BP-4789 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4790      TCGA-BP-4797      TCGA-BP-4798      TCGA-BP-4799 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4801      TCGA-BP-4803      TCGA-BP-4804      TCGA-BP-4807 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4960      TCGA-BP-4961      TCGA-BP-4962      TCGA-BP-4963 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4964      TCGA-BP-4965      TCGA-BP-4967      TCGA-BP-4968 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4970      TCGA-BP-4971      TCGA-BP-4972      TCGA-BP-4973 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4974      TCGA-BP-4975      TCGA-BP-4976      TCGA-BP-4977 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4981      TCGA-BP-4982      TCGA-BP-4983      TCGA-BP-4985 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4986      TCGA-BP-4987      TCGA-BP-4988      TCGA-BP-4989 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4991      TCGA-BP-4992      TCGA-BP-4993      TCGA-BP-4994 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4995      TCGA-BP-4998      TCGA-BP-4999      TCGA-BP-5000 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5001      TCGA-BP-5004      TCGA-BP-5006      TCGA-BP-5007 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5008      TCGA-BP-5009      TCGA-BP-5010      TCGA-BP-5168 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5169      TCGA-BP-5170      TCGA-BP-5173      TCGA-BP-5174 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5175      TCGA-BP-5176      TCGA-BP-5177      TCGA-BP-5178 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5180      TCGA-BP-5181      TCGA-BP-5182      TCGA-BP-5183 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5184      TCGA-BP-5185      TCGA-BP-5186      TCGA-BP-5187 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5189      TCGA-BP-5190      TCGA-BP-5191      TCGA-BP-5192 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5194      TCGA-BP-5195      TCGA-BP-5196      TCGA-BP-5198 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5199      TCGA-BP-5200      TCGA-BP-5201      TCGA-BP-5202 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5875      TCGA-BQ-5877      TCGA-BQ-5878      TCGA-BQ-5879 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5880      TCGA-BQ-5881      TCGA-BQ-5882      TCGA-BQ-5883 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5885      TCGA-BQ-5887      TCGA-BQ-5888      TCGA-BQ-5889 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5890      TCGA-BQ-5891      TCGA-BQ-5892      TCGA-BQ-5893 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5894      TCGA-BQ-7044      TCGA-BQ-7046      TCGA-BQ-7048 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-7049      TCGA-BQ-7050      TCGA-BQ-7051      TCGA-BQ-7053 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-7055      TCGA-BQ-7056      TCGA-BQ-7058      TCGA-BQ-7059 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062      TCGA-CJ-4634 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4635      TCGA-CJ-4638      TCGA-CJ-4640      TCGA-CJ-4868 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4869      TCGA-CJ-4870      TCGA-CJ-4871      TCGA-CJ-4872 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4873      TCGA-CJ-4874      TCGA-CJ-4875      TCGA-CJ-4876 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4878      TCGA-CJ-4881      TCGA-CJ-4882      TCGA-CJ-4884 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4885      TCGA-CJ-4886      TCGA-CJ-4887      TCGA-CJ-4888 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4889      TCGA-CJ-4890      TCGA-CJ-4891      TCGA-CJ-4892 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4893      TCGA-CJ-4894      TCGA-CJ-4895      TCGA-CJ-4897 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4899      TCGA-CJ-4900      TCGA-CJ-4901      TCGA-CJ-4902 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4903      TCGA-CJ-4904      TCGA-CJ-4905      TCGA-CJ-4907 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4908      TCGA-CJ-4912      TCGA-CJ-4913      TCGA-CJ-4916 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4918      TCGA-CJ-4920      TCGA-CJ-4923      TCGA-CJ-5671 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-5672      TCGA-CJ-5675      TCGA-CJ-5676      TCGA-CJ-5677 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-5678      TCGA-CJ-5679      TCGA-CJ-5680      TCGA-CJ-5681 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-5682      TCGA-CJ-5683      TCGA-CJ-5684      TCGA-CJ-5686 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-6027      TCGA-CJ-6028      TCGA-CJ-6030      TCGA-CJ-6031 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-6032      TCGA-CJ-6033      TCGA-CW-5580      TCGA-CW-5581 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CW-5583      TCGA-CW-5585      TCGA-CW-5588      TCGA-CW-5589 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CW-5591      TCGA-CW-6087      TCGA-CW-6090      TCGA-CW-6093 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CW-6097      TCGA-CZ-4853      TCGA-CZ-4854      TCGA-CZ-4856 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-4857      TCGA-CZ-4858      TCGA-CZ-4859      TCGA-CZ-4861 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-4862      TCGA-CZ-4863      TCGA-CZ-4865      TCGA-CZ-4866 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5451      TCGA-CZ-5452      TCGA-CZ-5453      TCGA-CZ-5454 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5455      TCGA-CZ-5456      TCGA-CZ-5457      TCGA-CZ-5458 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5460      TCGA-CZ-5461      TCGA-CZ-5462 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5463      TCGA-CZ-5465      TCGA-CZ-5466      TCGA-CZ-5467 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5468      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5982 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5984      TCGA-CZ-5985      TCGA-CZ-5986      TCGA-CZ-5987 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5988      TCGA-CZ-5989      TCGA-DV-5565      TCGA-DV-5566 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DV-5568      TCGA-DV-5569      TCGA-DV-5574      TCGA-DV-5575 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DV-5576      TCGA-DW-5560      TCGA-DW-5561      TCGA-DW-7834 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DW-7837      TCGA-DW-7838      TCGA-DW-7839      TCGA-DW-7840 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DW-7841      TCGA-DW-7842      TCGA-DW-7963      TCGA-DZ-6131 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134      TCGA-DZ-6135 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-EU-5904      TCGA-EU-5905      TCGA-EU-5906      TCGA-EU-5907 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-EV-5901      TCGA-EV-5902      TCGA-EV-5903      TCGA-F9-A4JJ 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-F9-A7Q0      TCGA-F9-A7VF      TCGA-F9-A8NY      TCGA-F9-A97G 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792      TCGA-G7-6793 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-6797      TCGA-G7-7501 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-G7-A8LB      TCGA-G7-A8LC 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-G7-A8LD      TCGA-G7-A8LE      TCGA-GL-6846      TCGA-GL-7773 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59R 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-GL-A9DC      TCGA-GL-A9DD      TCGA-GL-A9DE      TCGA-HE-7128 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-HE-7129      TCGA-HE-7130      TCGA-HE-A5NF      TCGA-HE-A5NH 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-HE-A5NI      TCGA-HE-A5NJ      TCGA-HE-A5NK      TCGA-HE-A5NL 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-IA-A40U      TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IA-A83V 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-IA-A83W      TCGA-IZ-8195      TCGA-IZ-8196      TCGA-IZ-A6M8 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-J7-6720      TCGA-J7-8537      TCGA-J7-A8I2      TCGA-KL-8324 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8325      TCGA-KL-8326      TCGA-KL-8327      TCGA-KL-8328 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8329      TCGA-KL-8330      TCGA-KL-8331      TCGA-KL-8332 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8333      TCGA-KL-8334      TCGA-KL-8335      TCGA-KL-8336 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8337      TCGA-KL-8338      TCGA-KL-8339      TCGA-KL-8340 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343      TCGA-KL-8344 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8345      TCGA-KL-8346      TCGA-KM-8438      TCGA-KM-8439 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KM-8440      TCGA-KM-8441      TCGA-KM-8442      TCGA-KM-8443 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KM-8476      TCGA-KM-8639      TCGA-KN-8418      TCGA-KN-8419 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8421      TCGA-KN-8423      TCGA-KN-8424      TCGA-KN-8425 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8426      TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8430      TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8434      TCGA-KN-8435      TCGA-KN-8436      TCGA-KN-8437 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KO-8403      TCGA-KO-8404      TCGA-KO-8405      TCGA-KO-8406 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KO-8407      TCGA-KO-8408      TCGA-KO-8409      TCGA-KO-8410 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KO-8411      TCGA-KO-8413      TCGA-KO-8414      TCGA-KO-8415 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KO-8416      TCGA-KO-8417      TCGA-KV-A6GD      TCGA-KV-A6GE 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KV-A74V      TCGA-MH-A55Z      TCGA-MH-A560      TCGA-MH-A562 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-MH-A855      TCGA-P4-A5E6      TCGA-P4-A5E7      TCGA-P4-A5E8 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-P4-A5EA      TCGA-P4-A5EB      TCGA-P4-A5ED      TCGA-P4-AAVL 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-P4-AAVM      TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-PJ-A8JU 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-Q2-A5QZ      TCGA-SX-A71R      TCGA-SX-A71U      TCGA-SX-A7SM 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-SX-A7SN      TCGA-SX-A7SO      TCGA-SX-A7SP      TCGA-SX-A7SQ 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-SX-A7SR      TCGA-SX-A7SS      TCGA-UN-AAZ9      TCGA-UZ-A9PJ 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-UZ-A9PK      TCGA-UZ-A9PL      TCGA-UZ-A9PM      TCGA-UZ-A9PN 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-UZ-A9PO      TCGA-UZ-A9PP      TCGA-UZ-A9PR      TCGA-UZ-A9PS 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-UZ-A9PU      TCGA-UZ-A9PV      TCGA-UZ-A9PX      TCGA-UZ-A9PZ 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-UZ-A9Q0      TCGA-UZ-A9Q1      TCGA-V9-A7HT      TCGA-WN-A9G9 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-Y8-A894      TCGA-Y8-A895      TCGA-Y8-A896      TCGA-Y8-A897 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-Y8-A8RY      TCGA-Y8-A8RZ      TCGA-Y8-A8S0      TCGA-Y8-A8S1 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCBL2 MUTATED        0      0      1      2
  CCBL2 WILD-TYPE    107    179    232    260
D68V7, multiclass
        clus
vv       CCBL2 MUTATED CCBL2 WILD-TYPE
  CLUS_1             0             107
  CLUS_2             0             179
  CLUS_3             1             232
  CLUS_4             2             260
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCBL2 MUTATED        0      0      0      0      0      0      1      0
  CCBL2 WILD-TYPE     84     50    122     77    107     32     89     52
                 vv
clus              CLUS_9
  CCBL2 MUTATED        2
  CCBL2 WILD-TYPE    165
D68V8, multiclass
        clus
vv       CCBL2 MUTATED CCBL2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              50
  CLUS_3             0             122
  CLUS_4             0              77
  CLUS_5             0             107
  CLUS_6             0              32
  CLUS_7             1              89
  CLUS_8             0              52
  CLUS_9             2             165
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCBL2 MUTATED        2      0      1
  CCBL2 WILD-TYPE    327    164    281
D68V9, multiclass
        clus
vv       CCBL2 MUTATED CCBL2 WILD-TYPE
  CLUS_1             2             327
  CLUS_2             0             164
  CLUS_3             1             281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCBL2 MUTATED        0      0      1      2
  CCBL2 WILD-TYPE     73    300    197    202
D68V10, multiclass
        clus
vv       CCBL2 MUTATED CCBL2 WILD-TYPE
  CLUS_1             0              73
  CLUS_2             0             300
  CLUS_3             1             197
  CLUS_4             2             202
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCBL2 MUTATED        2      0      0      0
  CCBL2 WILD-TYPE    153     66     56     96
D68V11, multiclass
[1] "Remove cluster labels:" "CCBL2 MUTATED"         
clus
  CCBL2 MUTATED CCBL2 WILD-TYPE 
              2             371 
     TCGA-2K-A9WE      TCGA-2Z-A9J1      TCGA-2Z-A9J2      TCGA-2Z-A9J3 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-2Z-A9J5      TCGA-2Z-A9J6      TCGA-2Z-A9JD      TCGA-2Z-A9JG 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-2Z-A9JI      TCGA-2Z-A9JJ      TCGA-2Z-A9JK      TCGA-2Z-A9JL 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-2Z-A9JM      TCGA-2Z-A9JN      TCGA-2Z-A9JO      TCGA-2Z-A9JP 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-2Z-A9JQ      TCGA-2Z-A9JR      TCGA-2Z-A9JT      TCGA-4A-A93W 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-4A-A93X      TCGA-4A-A93Y      TCGA-5P-A9JV      TCGA-5P-A9JW 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-5P-A9JY      TCGA-5P-A9JZ      TCGA-5P-A9K0      TCGA-5P-A9K6 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-5P-A9K8      TCGA-5P-A9KA      TCGA-5P-A9KC      TCGA-5P-A9KE 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-A4-A772 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4700      TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4852      TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5399      TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5694      TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5702      TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B1-A47N      TCGA-B1-A47O      TCGA-B1-A654      TCGA-B1-A656 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-5633 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104      TCGA-B3-8121 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621      TCGA-B8-5545 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552      TCGA-B8-5553 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5155      TCGA-B9-5156 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-B9-A8YH 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B9-A8YI      TCGA-BP-4173      TCGA-BP-4340      TCGA-BP-4761 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4770      TCGA-BP-4787      TCGA-BP-4789      TCGA-BP-4790 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4804      TCGA-BP-4807      TCGA-BP-4961      TCGA-BP-4967 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4968      TCGA-BP-4970      TCGA-BP-4974      TCGA-BP-4976 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4981      TCGA-BP-4982      TCGA-BP-4985      TCGA-BP-4988 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4989      TCGA-BP-4992      TCGA-BP-4995      TCGA-BP-4998 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5001      TCGA-BP-5008      TCGA-BP-5009      TCGA-BQ-5876 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5877      TCGA-BQ-5878      TCGA-BQ-5879      TCGA-BQ-5880 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5881      TCGA-BQ-5882      TCGA-BQ-5883      TCGA-BQ-5884 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5886      TCGA-BQ-5887      TCGA-BQ-5888      TCGA-BQ-5889 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5890      TCGA-BQ-5891      TCGA-BQ-5892      TCGA-BQ-5893 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5894      TCGA-BQ-7044      TCGA-BQ-7045      TCGA-BQ-7046 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-7048      TCGA-BQ-7049      TCGA-BQ-7050      TCGA-BQ-7051 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7056      TCGA-BQ-7058 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7836      TCGA-DW-7837 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DW-7838      TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DZ-6131      TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DZ-6135      TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-EV-5903      TCGA-F9-A4JJ      TCGA-F9-A7Q0      TCGA-F9-A8NY 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-F9-A97G      TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-G7-A8LB      TCGA-G7-A8LC 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-G7-A8LD      TCGA-G7-A8LE      TCGA-GL-6846      TCGA-GL-7773 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-GL-A9DC      TCGA-GL-A9DD      TCGA-GL-A9DE      TCGA-HE-7128 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-HE-A5NL      TCGA-IA-A40U 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IA-A83S      TCGA-IA-A83T 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-IA-A83V      TCGA-IA-A83W      TCGA-IZ-8195      TCGA-IZ-8196 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537      TCGA-J7-A8I2 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8323      TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8331      TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8335      TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8340      TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8344      TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KM-8441      TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8419      TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8426      TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8430      TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8434      TCGA-KN-8436      TCGA-KN-8437      TCGA-KO-8404 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KO-8405      TCGA-KO-8408      TCGA-KO-8409      TCGA-KO-8410 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KO-8413      TCGA-KO-8415      TCGA-KO-8416      TCGA-KO-8417 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KV-A6GD      TCGA-KV-A6GE      TCGA-KV-A74V      TCGA-MH-A855 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-MH-A856      TCGA-MH-A857      TCGA-O9-A75Z      TCGA-P4-A5E6 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA      TCGA-P4-AAVL 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-P4-AAVM      TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-SX-A71R      TCGA-SX-A71S      TCGA-SX-A71U      TCGA-SX-A71W 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-SX-A7SL      TCGA-SX-A7SM      TCGA-SX-A7SN      TCGA-SX-A7SO 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-SX-A7SP      TCGA-SX-A7SR      TCGA-SX-A7SS      TCGA-SX-A7SU 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-UZ-A9PJ      TCGA-UZ-A9PK      TCGA-UZ-A9PL      TCGA-UZ-A9PN 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-UZ-A9PO      TCGA-UZ-A9PP      TCGA-UZ-A9PR      TCGA-UZ-A9PU 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-UZ-A9PV      TCGA-UZ-A9PX      TCGA-UZ-A9PZ      TCGA-V9-A7HT 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-WN-A9G9      TCGA-WN-AB4C      TCGA-Y8-A897      TCGA-Y8-A8RY 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-Y8-A8RZ      TCGA-Y8-A8S0      TCGA-Y8-A8S1 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCBL2 MUTATED        0      0      2      0      0      0      0
  CCBL2 WILD-TYPE     90     73     48     19     37     58     46
D68V12, multiclass
[1] "Remove cluster labels:" "CCBL2 MUTATED"         
clus
  CCBL2 MUTATED CCBL2 WILD-TYPE 
              2             371 
     TCGA-2K-A9WE      TCGA-2Z-A9J1      TCGA-2Z-A9J2      TCGA-2Z-A9J3 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-2Z-A9J5      TCGA-2Z-A9J6      TCGA-2Z-A9JD      TCGA-2Z-A9JG 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-2Z-A9JI      TCGA-2Z-A9JJ      TCGA-2Z-A9JK      TCGA-2Z-A9JL 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-2Z-A9JM      TCGA-2Z-A9JN      TCGA-2Z-A9JO      TCGA-2Z-A9JP 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-2Z-A9JQ      TCGA-2Z-A9JR      TCGA-2Z-A9JT      TCGA-4A-A93W 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-4A-A93X      TCGA-4A-A93Y      TCGA-5P-A9JV      TCGA-5P-A9JW 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-5P-A9JY      TCGA-5P-A9JZ      TCGA-5P-A9K0      TCGA-5P-A9K6 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-5P-A9K8      TCGA-5P-A9KA      TCGA-5P-A9KC      TCGA-5P-A9KE 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A3-3317      TCGA-A3-3358      TCGA-A3-3387      TCGA-A4-7286 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-7287      TCGA-A4-7288      TCGA-A4-7585      TCGA-A4-7734 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-7828      TCGA-A4-7915      TCGA-A4-7996      TCGA-A4-7997 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-8098      TCGA-A4-8310      TCGA-A4-8312      TCGA-A4-8515 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-8517      TCGA-A4-8518      TCGA-A4-8630      TCGA-A4-A57E 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-A4-A5XZ      TCGA-A4-A5Y0      TCGA-A4-A5Y1      TCGA-A4-A772 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-AK-3440      TCGA-AK-3458      TCGA-AK-3465      TCGA-AL-3466 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-AL-3472      TCGA-AL-3473      TCGA-AL-7173      TCGA-AT-A5NU 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4700      TCGA-B0-4706      TCGA-B0-4710      TCGA-B0-4712 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4810      TCGA-B0-4811      TCGA-B0-4836      TCGA-B0-4837 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-4852      TCGA-B0-5080      TCGA-B0-5085      TCGA-B0-5088 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5399      TCGA-B0-5691      TCGA-B0-5692      TCGA-B0-5693 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5694      TCGA-B0-5695      TCGA-B0-5696      TCGA-B0-5699 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B0-5702      TCGA-B0-5705      TCGA-B0-5709      TCGA-B1-5398 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B1-A47N      TCGA-B1-A47O      TCGA-B1-A654      TCGA-B1-A656 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B1-A657      TCGA-B2-3923      TCGA-B2-3924      TCGA-B2-5633 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B2-5635      TCGA-B3-3925      TCGA-B3-4104      TCGA-B3-8121 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B4-5377      TCGA-B4-5836      TCGA-B8-4621      TCGA-B8-5545 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B8-5550      TCGA-B8-5551      TCGA-B8-5552      TCGA-B8-5553 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B9-4115      TCGA-B9-4117      TCGA-B9-5155      TCGA-B9-5156 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B9-A44B      TCGA-B9-A5W9      TCGA-B9-A69E      TCGA-B9-A8YH 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-B9-A8YI      TCGA-BP-4173      TCGA-BP-4340      TCGA-BP-4761 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4770      TCGA-BP-4787      TCGA-BP-4789      TCGA-BP-4790 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4804      TCGA-BP-4807      TCGA-BP-4961      TCGA-BP-4967 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4968      TCGA-BP-4970      TCGA-BP-4974      TCGA-BP-4976 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4981      TCGA-BP-4982      TCGA-BP-4985      TCGA-BP-4988 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-4989      TCGA-BP-4992      TCGA-BP-4995      TCGA-BP-4998 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BP-5001      TCGA-BP-5008      TCGA-BP-5009      TCGA-BQ-5876 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5877      TCGA-BQ-5878      TCGA-BQ-5879      TCGA-BQ-5880 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5881      TCGA-BQ-5882      TCGA-BQ-5883      TCGA-BQ-5884 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5886      TCGA-BQ-5887      TCGA-BQ-5888      TCGA-BQ-5889 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5890      TCGA-BQ-5891      TCGA-BQ-5892      TCGA-BQ-5893 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-5894      TCGA-BQ-7044      TCGA-BQ-7045      TCGA-BQ-7046 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-7048      TCGA-BQ-7049      TCGA-BQ-7050      TCGA-BQ-7051 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-7053      TCGA-BQ-7055      TCGA-BQ-7056      TCGA-BQ-7058 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-BQ-7059      TCGA-BQ-7060      TCGA-BQ-7061      TCGA-BQ-7062 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4870      TCGA-CJ-4875      TCGA-CJ-4876      TCGA-CJ-4878 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4881      TCGA-CJ-4887      TCGA-CJ-4889      TCGA-CJ-4890 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-4895      TCGA-CJ-4900      TCGA-CJ-5671      TCGA-CJ-5675 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-5676      TCGA-CJ-5681      TCGA-CJ-5683      TCGA-CJ-5686 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CJ-6031      TCGA-CJ-6032      TCGA-CW-5585      TCGA-CW-5589 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CW-6087      TCGA-CZ-4854      TCGA-CZ-4857      TCGA-CZ-4858 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5453      TCGA-CZ-5454      TCGA-CZ-5455      TCGA-CZ-5457 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5459      TCGA-CZ-5462      TCGA-CZ-5463      TCGA-CZ-5466 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-CZ-5467      TCGA-CZ-5469      TCGA-CZ-5470      TCGA-CZ-5989 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DV-5565      TCGA-DV-5566      TCGA-DV-5569      TCGA-DW-5560 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DW-5561      TCGA-DW-7834      TCGA-DW-7836      TCGA-DW-7837 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DW-7838      TCGA-DW-7839      TCGA-DW-7840      TCGA-DW-7842 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DZ-6131      TCGA-DZ-6132      TCGA-DZ-6133      TCGA-DZ-6134 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-DZ-6135      TCGA-EU-5904      TCGA-EV-5901      TCGA-EV-5902 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-EV-5903      TCGA-F9-A4JJ      TCGA-F9-A7Q0      TCGA-F9-A8NY 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-F9-A97G      TCGA-G7-6789      TCGA-G7-6790      TCGA-G7-6792 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-G7-6793      TCGA-G7-6795      TCGA-G7-6796      TCGA-G7-7501 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-G7-7502      TCGA-G7-A4TM      TCGA-G7-A8LB      TCGA-G7-A8LC 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-G7-A8LD      TCGA-G7-A8LE      TCGA-GL-6846      TCGA-GL-7773 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-GL-7966      TCGA-GL-8500      TCGA-GL-A4EM      TCGA-GL-A59T 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-GL-A9DC      TCGA-GL-A9DD      TCGA-GL-A9DE      TCGA-HE-7128 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-HE-7130      TCGA-HE-A5NJ      TCGA-HE-A5NL      TCGA-IA-A40U 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-IA-A40X      TCGA-IA-A40Y      TCGA-IA-A83S      TCGA-IA-A83T 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-IA-A83V      TCGA-IA-A83W      TCGA-IZ-8195      TCGA-IZ-8196 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-IZ-A6M9      TCGA-J7-6720      TCGA-J7-8537      TCGA-J7-A8I2 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8323      TCGA-KL-8324      TCGA-KL-8327      TCGA-KL-8328 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8331      TCGA-KL-8332      TCGA-KL-8333      TCGA-KL-8334 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8335      TCGA-KL-8336      TCGA-KL-8338      TCGA-KL-8339 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8340      TCGA-KL-8341      TCGA-KL-8342      TCGA-KL-8343 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KL-8344      TCGA-KL-8345      TCGA-KM-8438      TCGA-KM-8439 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KM-8441      TCGA-KM-8442      TCGA-KM-8639      TCGA-KN-8418 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8419      TCGA-KN-8422      TCGA-KN-8423      TCGA-KN-8424 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8426      TCGA-KN-8427      TCGA-KN-8428      TCGA-KN-8429 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8430      TCGA-KN-8431      TCGA-KN-8432      TCGA-KN-8433 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KN-8434      TCGA-KN-8436      TCGA-KN-8437      TCGA-KO-8404 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KO-8405      TCGA-KO-8408      TCGA-KO-8409      TCGA-KO-8410 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KO-8413      TCGA-KO-8415      TCGA-KO-8416      TCGA-KO-8417 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-KV-A6GD      TCGA-KV-A6GE      TCGA-KV-A74V      TCGA-MH-A855 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-MH-A856      TCGA-MH-A857      TCGA-O9-A75Z      TCGA-P4-A5E6 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-P4-A5E7      TCGA-P4-A5E8      TCGA-P4-A5EA      TCGA-P4-AAVL 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-P4-AAVM      TCGA-PJ-A5Z8      TCGA-PJ-A5Z9      TCGA-Q2-A5QZ 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-SX-A71R      TCGA-SX-A71S      TCGA-SX-A71U      TCGA-SX-A71W 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-SX-A7SL      TCGA-SX-A7SM      TCGA-SX-A7SN      TCGA-SX-A7SO 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-SX-A7SP      TCGA-SX-A7SR      TCGA-SX-A7SS      TCGA-SX-A7SU 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-UZ-A9PJ      TCGA-UZ-A9PK      TCGA-UZ-A9PL      TCGA-UZ-A9PN 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-UZ-A9PO      TCGA-UZ-A9PP      TCGA-UZ-A9PR      TCGA-UZ-A9PU 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-UZ-A9PV      TCGA-UZ-A9PX      TCGA-UZ-A9PZ      TCGA-V9-A7HT 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-WN-A9G9      TCGA-WN-AB4C      TCGA-Y8-A897      TCGA-Y8-A8RY 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 
     TCGA-Y8-A8RZ      TCGA-Y8-A8S0      TCGA-Y8-A8S1 
"CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" "CCBL2 WILD-TYPE" 

Clustering(69) Variable = B3GNT6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GNT6 MUTATED        0      0      0      0
  B3GNT6 WILD-TYPE     17     16     10     15
D69V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B3GNT6 MUTATED        0      0      0      0      0
  B3GNT6 WILD-TYPE      7     16     16     10      9
D69V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  B3GNT6 MUTATED        1      2      0
  B3GNT6 WILD-TYPE    312    166    298
D69V3, multiclass
        clus
vv       B3GNT6 MUTATED B3GNT6 WILD-TYPE
  CLUS_1              1              312
  CLUS_2              2              166
  CLUS_3              0              298
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B3GNT6 MUTATED        1      0      1      0      1
  B3GNT6 WILD-TYPE     94    111    141     63    184
D69V4, multiclass
        clus
vv       B3GNT6 MUTATED B3GNT6 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              0              111
  CLUS_3              1              141
  CLUS_4              0               63
  CLUS_5              1              184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GNT6 MUTATED        1      1      1      0
  B3GNT6 WILD-TYPE    162    160    169    175
D69V5, multiclass
        clus
vv       B3GNT6 MUTATED B3GNT6 WILD-TYPE
  CLUS_1              1              162
  CLUS_2              1              160
  CLUS_3              1              169
  CLUS_4              0              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  B3GNT6 MUTATED        1      0      1      1      0      0      0
  B3GNT6 WILD-TYPE    177     62    104    128     52     61     82
D69V6, multiclass
        clus
vv       B3GNT6 MUTATED B3GNT6 WILD-TYPE
  CLUS_1              1              177
  CLUS_2              0               62
  CLUS_3              1              104
  CLUS_4              1              128
  CLUS_5              0               52
  CLUS_6              0               61
  CLUS_7              0               82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GNT6 MUTATED        0      0      1      2
  B3GNT6 WILD-TYPE    107    179    232    260
D69V7, multiclass
        clus
vv       B3GNT6 MUTATED B3GNT6 WILD-TYPE
  CLUS_1              0              107
  CLUS_2              0              179
  CLUS_3              1              232
  CLUS_4              2              260
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  B3GNT6 MUTATED        0      1      1      0      0      0      0      0
  B3GNT6 WILD-TYPE     84     49    121     77    107     32     90     52
                  vv
clus               CLUS_9
  B3GNT6 MUTATED        1
  B3GNT6 WILD-TYPE    166
D69V8, multiclass
        clus
vv       B3GNT6 MUTATED B3GNT6 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               49
  CLUS_3              1              121
  CLUS_4              0               77
  CLUS_5              0              107
  CLUS_6              0               32
  CLUS_7              0               90
  CLUS_8              0               52
  CLUS_9              1              166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  B3GNT6 MUTATED        2      0      1
  B3GNT6 WILD-TYPE    327    164    281
D69V9, multiclass
        clus
vv       B3GNT6 MUTATED B3GNT6 WILD-TYPE
  CLUS_1              2              327
  CLUS_2              0              164
  CLUS_3              1              281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GNT6 MUTATED        0      1      1      1
  B3GNT6 WILD-TYPE     73    299    197    203
D69V10, multiclass
        clus
vv       B3GNT6 MUTATED B3GNT6 WILD-TYPE
  CLUS_1              0               73
  CLUS_2              1              299
  CLUS_3              1              197
  CLUS_4              1              203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GNT6 MUTATED        1      0      0      0
  B3GNT6 WILD-TYPE    154     66     56     96
D69V11, multiclass
[1] "Remove cluster labels:" "B3GNT6 MUTATED"        
clus
  B3GNT6 MUTATED B3GNT6 WILD-TYPE 
               1              372 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J2       TCGA-2Z-A9J3 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-2Z-A9J5       TCGA-2Z-A9J6       TCGA-2Z-A9JD       TCGA-2Z-A9JG 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JK       TCGA-2Z-A9JL 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-2Z-A9JM       TCGA-2Z-A9JN       TCGA-2Z-A9JO       TCGA-2Z-A9JP 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-2Z-A9JQ       TCGA-2Z-A9JR       TCGA-2Z-A9JT       TCGA-4A-A93W 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JV       TCGA-5P-A9JW 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9JZ       TCGA-5P-A9K0       TCGA-5P-A9K6 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-5P-A9K8       TCGA-5P-A9KA       TCGA-5P-A9KC       TCGA-5P-A9KE 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-A4-A772 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B0-4700       TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B0-4852       TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B0-5399       TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B1-A47N       TCGA-B1-A47O       TCGA-B1-A654       TCGA-B1-A656 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-5633 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104       TCGA-B3-8121 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621       TCGA-B8-5545 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5155       TCGA-B9-5156 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B9-A8YI       TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BP-4770       TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BP-4968       TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BP-4989       TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BP-5001       TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-7048       TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7836       TCGA-DW-7837 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-DZ-6135       TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-F9-A7Q0       TCGA-F9-A8NY 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-F9-A97G       TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6793 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC       TCGA-G7-A8LD 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-GL-A9DC 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128       TCGA-HE-7130 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-HE-A5NJ       TCGA-HE-A5NL       TCGA-IA-A40U       TCGA-IA-A40X 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IA-A83S       TCGA-IA-A83T       TCGA-IA-A83V 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-IA-A83W       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-J7-A8I2       TCGA-KL-8323 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-KV-A74V       TCGA-MH-A854       TCGA-MH-A855 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-MH-A856       TCGA-MH-A857       TCGA-O9-A75Z       TCGA-P4-A5E6 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA       TCGA-P4-AAVL 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-P4-AAVM       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-SX-A71R       TCGA-SX-A71S       TCGA-SX-A71U       TCGA-SX-A71W 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-SX-A7SL       TCGA-SX-A7SM       TCGA-SX-A7SN       TCGA-SX-A7SO 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-SX-A7SP       TCGA-SX-A7SR       TCGA-SX-A7SS       TCGA-SX-A7SU 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-UZ-A9PJ       TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PN 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-UZ-A9PO       TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PU 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-UZ-A9PV       TCGA-UZ-A9PX       TCGA-UZ-A9PZ       TCGA-V9-A7HT 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-WN-A9G9       TCGA-WN-AB4C       TCGA-Y8-A897       TCGA-Y8-A898 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-Y8-A8RY       TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  B3GNT6 MUTATED        1      0      0      0      0      0      0
  B3GNT6 WILD-TYPE     89     73     50     19     37     58     46
D69V12, multiclass
[1] "Remove cluster labels:" "B3GNT6 MUTATED"        
clus
  B3GNT6 MUTATED B3GNT6 WILD-TYPE 
               1              372 
      TCGA-2K-A9WE       TCGA-2Z-A9J1       TCGA-2Z-A9J2       TCGA-2Z-A9J3 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-2Z-A9J5       TCGA-2Z-A9J6       TCGA-2Z-A9JD       TCGA-2Z-A9JG 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-2Z-A9JI       TCGA-2Z-A9JJ       TCGA-2Z-A9JK       TCGA-2Z-A9JL 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-2Z-A9JM       TCGA-2Z-A9JN       TCGA-2Z-A9JO       TCGA-2Z-A9JP 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-2Z-A9JQ       TCGA-2Z-A9JR       TCGA-2Z-A9JT       TCGA-4A-A93W 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-4A-A93X       TCGA-4A-A93Y       TCGA-5P-A9JV       TCGA-5P-A9JW 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-5P-A9JY       TCGA-5P-A9JZ       TCGA-5P-A9K0       TCGA-5P-A9K6 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-5P-A9K8       TCGA-5P-A9KA       TCGA-5P-A9KC       TCGA-5P-A9KE 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-A3-3317       TCGA-A3-3358       TCGA-A3-3387       TCGA-A4-7286 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-A4-7287       TCGA-A4-7288       TCGA-A4-7585       TCGA-A4-7734 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-A4-7828       TCGA-A4-7915       TCGA-A4-7996       TCGA-A4-7997 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-A4-8098       TCGA-A4-8310       TCGA-A4-8312       TCGA-A4-8515 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-A4-8517       TCGA-A4-8518       TCGA-A4-8630       TCGA-A4-A57E 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-A4-A5XZ       TCGA-A4-A5Y0       TCGA-A4-A5Y1       TCGA-A4-A772 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-AK-3440       TCGA-AK-3458       TCGA-AK-3465       TCGA-AL-3466 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-AL-3472       TCGA-AL-3473       TCGA-AL-7173       TCGA-AT-A5NU 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B0-4700       TCGA-B0-4706       TCGA-B0-4710       TCGA-B0-4712 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B0-4810       TCGA-B0-4811       TCGA-B0-4836       TCGA-B0-4837 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B0-4852       TCGA-B0-5080       TCGA-B0-5085       TCGA-B0-5088 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B0-5399       TCGA-B0-5691       TCGA-B0-5692       TCGA-B0-5693 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B0-5694       TCGA-B0-5695       TCGA-B0-5696       TCGA-B0-5699 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B0-5702       TCGA-B0-5705       TCGA-B0-5709       TCGA-B1-5398 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B1-A47N       TCGA-B1-A47O       TCGA-B1-A654       TCGA-B1-A656 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B1-A657       TCGA-B2-3923       TCGA-B2-3924       TCGA-B2-5633 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B2-5635       TCGA-B3-3925       TCGA-B3-4104       TCGA-B3-8121 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B4-5377       TCGA-B4-5836       TCGA-B8-4621       TCGA-B8-5545 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B8-5550       TCGA-B8-5551       TCGA-B8-5552       TCGA-B8-5553 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B9-4115       TCGA-B9-4117       TCGA-B9-5155       TCGA-B9-5156 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B9-A44B       TCGA-B9-A5W9       TCGA-B9-A69E       TCGA-B9-A8YH 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-B9-A8YI       TCGA-BP-4173       TCGA-BP-4340       TCGA-BP-4761 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BP-4770       TCGA-BP-4787       TCGA-BP-4789       TCGA-BP-4790 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BP-4804       TCGA-BP-4807       TCGA-BP-4961       TCGA-BP-4967 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BP-4968       TCGA-BP-4970       TCGA-BP-4974       TCGA-BP-4976 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BP-4981       TCGA-BP-4982       TCGA-BP-4985       TCGA-BP-4988 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BP-4989       TCGA-BP-4992       TCGA-BP-4995       TCGA-BP-4998 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BP-5001       TCGA-BP-5008       TCGA-BP-5009       TCGA-BQ-5876 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-5877       TCGA-BQ-5878       TCGA-BQ-5879       TCGA-BQ-5880 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-5881       TCGA-BQ-5882       TCGA-BQ-5883       TCGA-BQ-5884 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-5886       TCGA-BQ-5887       TCGA-BQ-5888       TCGA-BQ-5889 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-5890       TCGA-BQ-5891       TCGA-BQ-5892       TCGA-BQ-5893 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-5894       TCGA-BQ-7044       TCGA-BQ-7045       TCGA-BQ-7046 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-7048       TCGA-BQ-7049       TCGA-BQ-7050       TCGA-BQ-7051 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-7053       TCGA-BQ-7055       TCGA-BQ-7056       TCGA-BQ-7058 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-BQ-7059       TCGA-BQ-7060       TCGA-BQ-7061       TCGA-BQ-7062 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CJ-4870       TCGA-CJ-4875       TCGA-CJ-4876       TCGA-CJ-4878 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CJ-4881       TCGA-CJ-4887       TCGA-CJ-4889       TCGA-CJ-4890 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CJ-4895       TCGA-CJ-4900       TCGA-CJ-5671       TCGA-CJ-5675 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CJ-5676       TCGA-CJ-5681       TCGA-CJ-5683       TCGA-CJ-5686 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CJ-6031       TCGA-CJ-6032       TCGA-CW-5585       TCGA-CW-5589 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CW-6087       TCGA-CZ-4854       TCGA-CZ-4857       TCGA-CZ-4858 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CZ-5453       TCGA-CZ-5454       TCGA-CZ-5455       TCGA-CZ-5457 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CZ-5459       TCGA-CZ-5462       TCGA-CZ-5463       TCGA-CZ-5466 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-CZ-5467       TCGA-CZ-5469       TCGA-CZ-5470       TCGA-CZ-5989 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-DV-5565       TCGA-DV-5566       TCGA-DV-5569       TCGA-DW-5560 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-DW-5561       TCGA-DW-7834       TCGA-DW-7836       TCGA-DW-7837 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-DW-7838       TCGA-DW-7839       TCGA-DW-7840       TCGA-DW-7842 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-DZ-6131       TCGA-DZ-6132       TCGA-DZ-6133       TCGA-DZ-6134 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-DZ-6135       TCGA-EU-5904       TCGA-EV-5901       TCGA-EV-5902 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-EV-5903       TCGA-F9-A4JJ       TCGA-F9-A7Q0       TCGA-F9-A8NY 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-F9-A97G       TCGA-G7-6789       TCGA-G7-6790       TCGA-G7-6793 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-G7-6795       TCGA-G7-6796       TCGA-G7-7501       TCGA-G7-7502 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-G7-A4TM       TCGA-G7-A8LB       TCGA-G7-A8LC       TCGA-G7-A8LD 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-G7-A8LE       TCGA-GL-6846       TCGA-GL-7773       TCGA-GL-7966 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-GL-8500       TCGA-GL-A4EM       TCGA-GL-A59T       TCGA-GL-A9DC 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-GL-A9DD       TCGA-GL-A9DE       TCGA-HE-7128       TCGA-HE-7130 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-HE-A5NJ       TCGA-HE-A5NL       TCGA-IA-A40U       TCGA-IA-A40X 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-IA-A40Y       TCGA-IA-A83S       TCGA-IA-A83T       TCGA-IA-A83V 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-IA-A83W       TCGA-IZ-8195       TCGA-IZ-8196       TCGA-IZ-A6M9 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-J7-6720       TCGA-J7-8537       TCGA-J7-A8I2       TCGA-KL-8323 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KL-8324       TCGA-KL-8327       TCGA-KL-8328       TCGA-KL-8331 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KL-8332       TCGA-KL-8333       TCGA-KL-8334       TCGA-KL-8335 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KL-8336       TCGA-KL-8338       TCGA-KL-8339       TCGA-KL-8340 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KL-8341       TCGA-KL-8342       TCGA-KL-8343       TCGA-KL-8344 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KL-8345       TCGA-KM-8438       TCGA-KM-8439       TCGA-KM-8441 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KM-8442       TCGA-KM-8639       TCGA-KN-8418       TCGA-KN-8419 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KN-8422       TCGA-KN-8423       TCGA-KN-8424       TCGA-KN-8426 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KN-8427       TCGA-KN-8428       TCGA-KN-8429       TCGA-KN-8430 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KN-8431       TCGA-KN-8432       TCGA-KN-8433       TCGA-KN-8434 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KN-8436       TCGA-KN-8437       TCGA-KO-8404       TCGA-KO-8405 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KO-8408       TCGA-KO-8409       TCGA-KO-8410       TCGA-KO-8413 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KO-8415       TCGA-KO-8416       TCGA-KO-8417       TCGA-KV-A6GD 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-KV-A6GE       TCGA-KV-A74V       TCGA-MH-A854       TCGA-MH-A855 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-MH-A856       TCGA-MH-A857       TCGA-O9-A75Z       TCGA-P4-A5E6 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-P4-A5E7       TCGA-P4-A5E8       TCGA-P4-A5EA       TCGA-P4-AAVL 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-P4-AAVM       TCGA-PJ-A5Z8       TCGA-PJ-A5Z9       TCGA-Q2-A5QZ 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-SX-A71R       TCGA-SX-A71S       TCGA-SX-A71U       TCGA-SX-A71W 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-SX-A7SL       TCGA-SX-A7SM       TCGA-SX-A7SN       TCGA-SX-A7SO 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-SX-A7SP       TCGA-SX-A7SR       TCGA-SX-A7SS       TCGA-SX-A7SU 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-UZ-A9PJ       TCGA-UZ-A9PK       TCGA-UZ-A9PL       TCGA-UZ-A9PN 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-UZ-A9PO       TCGA-UZ-A9PP       TCGA-UZ-A9PR       TCGA-UZ-A9PU 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-UZ-A9PV       TCGA-UZ-A9PX       TCGA-UZ-A9PZ       TCGA-V9-A7HT 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-WN-A9G9       TCGA-WN-AB4C       TCGA-Y8-A897       TCGA-Y8-A898 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 
      TCGA-Y8-A8RY       TCGA-Y8-A8RZ       TCGA-Y8-A8S0       TCGA-Y8-A8S1 
"B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" "B3GNT6 WILD-TYPE" 

Clustering(70) Variable = HNF1B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        0      0      0      0
  HNF1B WILD-TYPE     17     16     10     15
D70V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNF1B MUTATED        0      0      0      0      0
  HNF1B WILD-TYPE      7     16     16     10      9
D70V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        2      0      2
  HNF1B WILD-TYPE    311    168    296
D70V3, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             2             311
  CLUS_2             0             168
  CLUS_3             2             296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNF1B MUTATED        1      0      2      0      1
  HNF1B WILD-TYPE     94    111    140     63    184
D70V4, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0             111
  CLUS_3             2             140
  CLUS_4             0              63
  CLUS_5             1             184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        0      3      1      0
  HNF1B WILD-TYPE    163    158    169    175
D70V5, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             0             163
  CLUS_2             3             158
  CLUS_3             1             169
  CLUS_4             0             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HNF1B MUTATED        2      2      0      0      0      0      0
  HNF1B WILD-TYPE    176     60    105    129     52     61     82
D70V6, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             2             176
  CLUS_2             2              60
  CLUS_3             0             105
  CLUS_4             0             129
  CLUS_5             0              52
  CLUS_6             0              61
  CLUS_7             0              82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        1      0      2      1
  HNF1B WILD-TYPE    106    179    231    261
D70V7, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1             106
  CLUS_2             0             179
  CLUS_3             2             231
  CLUS_4             1             261
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HNF1B MUTATED        1      0      0      0      0      0      0      2
  HNF1B WILD-TYPE     83     50    122     77    107     32     90     50
                 vv
clus              CLUS_9
  HNF1B MUTATED        1
  HNF1B WILD-TYPE    166
D70V8, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              50
  CLUS_3             0             122
  CLUS_4             0              77
  CLUS_5             0             107
  CLUS_6             0              32
  CLUS_7             0              90
  CLUS_8             2              50
  CLUS_9             1             166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        2      0      2
  HNF1B WILD-TYPE    327    164    280
D70V9, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             2             327
  CLUS_2             0             164
  CLUS_3             2             280
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        1      1      1      1
  HNF1B WILD-TYPE     72    299    197    203
D70V10, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1              72
  CLUS_2             1             299
  CLUS_3             1             197
  CLUS_4             1             203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        1      1      0      1
  HNF1B WILD-TYPE    154     65     56     95
D70V11, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1             154
  CLUS_2             1              65
  CLUS_3             0              56
  CLUS_4             1              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HNF1B MUTATED        0      0      1      0      0      1      1
  HNF1B WILD-TYPE     90     73     49     19     37     57     45
D70V12, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             0              90
  CLUS_2             0              73
  CLUS_3             1              49
  CLUS_4             0              19
  CLUS_5             0              37
  CLUS_6             1              57
  CLUS_7             1              45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
